BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00021856
         (986 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74951.1| hypothetical protein VITISV_030567, partial [Vit...   156   1e-38
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]   105   4e-38
emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]   122   4e-37
emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]    99   3e-35
ref|XP_004513130.2| PREDICTED: uncharacterized protein LOC101488...   129   4e-35
gb|PKU76715.1| Retrovirus-related Pol polyprotein from transposo...   145   5e-35
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]   145   6e-35
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...   144   2e-34
gb|PRQ51221.1| putative RNA-directed DNA polymerase [Rosa chinen...   121   2e-34
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   144   2e-34
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   144   2e-34
dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subt...   142   6e-34
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   142   7e-34
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...   141   2e-33
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   140   3e-33
gb|PNX78574.1| retrovirus-related Pol polyprotein from transposo...   140   3e-33
gb|PRQ49208.1| putative RNA-directed DNA polymerase [Rosa chinen...   125   3e-33
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo...   132   6e-33
gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygro...   139   7e-33
gb|PKU76601.1| Retrovirus-related Pol polyprotein from transposo...   138   2e-32

>emb|CAN74951.1| hypothetical protein VITISV_030567, partial [Vitis vinifera]
          Length = 2203

 Score =  156 bits (394), Expect = 1e-38
 Identities = 88/207 (42%), Positives = 118/207 (57%), Gaps = 33/207 (15%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHL--SSRLPSFVPQC-------NFVSTSPS 616
           DK + +ILL+G LK GLYQLD+S  S+  Q +  S     F+P         N  S +PS
Sbjct: 360 DKKSREILLQGNLKEGLYQLDISKVSSNRQFVGFSEDTNVFLPHLATTPSTVNKQSVAPS 419

Query: 617 L-----------------------NVWHHRLGHPCNATFSNVMKQLHIPFSC-NKLSFCE 724
           +                       ++WH RLGHPCN   S V+ +L I     N+L+FC 
Sbjct: 420 VGYSLQVNKIESTRCVEDNNTGVGHLWHQRLGHPCNKIVSLVLDRLGIKSKLQNELNFCT 479

Query: 725 ACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWGPAATPSCDGYKYYIHFLDEYTRFTWIYP 904
           AC +GK      P+  +K+  PF+LV+SDVW PA T SCDGYKYYI F+D +T +TWIYP
Sbjct: 480 ACPLGKAKQFPLPTTINKTQVPFELVFSDVWEPAHTTSCDGYKYYIAFVDAFTNYTWIYP 539

Query: 905 LVAKSDAYSTVLNFISMIERQFCTKIK 985
              KS A S VL FI++++R+F TK+K
Sbjct: 540 RQQKSQATSIVLQFIALVDRKFPTKLK 566



 Score = 69.3 bits (168), Expect = 4e-09
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
 Frame = +2

Query: 623  VWHHRLGHPCNATFSNVMKQLHI----PFSCNKLSFCEACKVGKLHSMSFPSIQSKS-SA 787
            +WH RLGH      S + K   +      +  K   CEAC++GK    SF +    S S 
Sbjct: 1034 LWHRRLGHANMDLISQLNKDELVRGLPKINFQKDKICEACQMGKQIKNSFKNKNFISTSR 1093

Query: 788  PFDLVYSDVWGPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQ 967
            P +L++ D++GP+ TPS  G  Y    +D+++R+TW+  L  KS+A+     F + ++ +
Sbjct: 1094 PLELLHMDLFGPSRTPSLGGKSYAYVIVDDFSRYTWVLFLSQKSEAFYEFSKFCNKVQNE 1153



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
 Frame = +1

Query: 157 CQICGKTNHLASKCFKRFDV-----------SFVGLDAPSQFN---PQAHLSEVSQYSPS 294
           CQ+CGK  H A KCF RFDV            F  L  P Q     P  H  +     P 
Sbjct: 170 CQLCGKMGHTAMKCFHRFDVYFQSPPHAQNQQFSSLHQPQQPQLRPPPLHQPQYYSIGPL 229

Query: 295 LPQA----------MTASLPQAVNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHG 444
           +P             T + P A  V     ++ SW+VDSGA+ H+T++   L +   Y G
Sbjct: 230 VPSRPIQNSHQQLDSTNTSPHAYIVAPDLNSNTSWFVDSGATHHMTTDSNTLDVFDHYSG 289

Query: 445 SDKLTVG 465
           +  + VG
Sbjct: 290 TGNVVVG 296


>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score =  105 bits (262), Expect(2) = 4e-38
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPS-LNVWHHRL 640
           D+ T  +L +G L+ GLY+  +     P   +++   +     +F ST  +   +WH+RL
Sbjct: 254 DRHTKMVLAQGKLENGLYKFPVFSNKKPYSSVNN---ASAFHSHFSSTIENKAELWHNRL 310

Query: 641 GHPCNATFSNVMKQLHIPFSCNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           GH  +   S VM   ++     K + C  C++ K H +       ++S P +LVY+D+WG
Sbjct: 311 GHVASDIVSKVMNTCNVASGKYKSTVCSDCQLAKSHRLPTQLSNFRASKPLELVYTDIWG 370

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA+  S  G KY+I F+D+Y+R+TW Y L            F   +E QF  KIK
Sbjct: 371 PASVKSTSGAKYFILFVDDYSRYTWFYSLQTNDQTLPIFKRFKLQMENQFDMKIK 425



 Score = 82.4 bits (202), Expect(2) = 4e-38
 Identities = 43/105 (40%), Positives = 57/105 (54%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFVGLDAPSQFNPQAHLSEVSQYSPSLPQAMTASLPQA 330
           P CQ+CGK  H A  C+ RFD+SF G    +              SPSL      ++   
Sbjct: 137 PQCQLCGKFGHTAQICYHRFDISFQGGXTTT--------------SPSLNNGNQNNILAM 182

Query: 331 VNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGSDKLTVG 465
           V   S  + D SWY+DSGAS H+T  LGNL+  SPY G+D++T+G
Sbjct: 183 VASFSNSSADESWYLDSGASHHLTQNLGNLTSTSPYTGTDRVTIG 227


>emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]
          Length = 1270

 Score =  122 bits (307), Expect(2) = 4e-37
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 2/176 (1%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           D+ T Q LLKG LK GLY+   S  S  A   +S +P+  P            +WH RLG
Sbjct: 329 DQVTKQTLLKGWLKDGLYEFPSSS-STHAFVSTSSIPALTPGA----------IWHSRLG 377

Query: 644 HPCNATFSNVMKQLH--IPFSCNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVW 817
           HP     S  +   +  + F  NK++ C+ C + K HS+ +    S +S P  L+++D+W
Sbjct: 378 HPAAPILSKALAFCNPSVSFQINKIAPCKICPLAKSHSLPYSLSSSHASQPLALIHTDLW 437

Query: 818 GPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           GPA +PS    +Y++ F+D+Y+R+TWIY L  K  A ST + F  MIE Q  + IK
Sbjct: 438 GPAPSPSTSSARYFLLFIDDYSRYTWIYFLSTKDQALSTFITFRKMIENQLNSTIK 493



 Score = 62.0 bits (149), Expect(2) = 4e-37
 Identities = 36/108 (33%), Positives = 54/108 (50%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFVGLDAPSQFNPQAHLSEVSQYSPSLPQAMTASLPQA 330
           P CQ+CGK  H   KC+ RFD+++ G +  S           SQ S  L QAM       
Sbjct: 234 PQCQLCGKFGHTVVKCYHRFDITYQGTNGVSS----------SQDSSPL-QAM------- 275

Query: 331 VNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGSDKLTVGQNN 474
             +T  P   +SW+ D+GA+ H++     LS   PY G+D++T+   +
Sbjct: 276 --LTIAPDHQDSWFFDTGATHHLSHSAQTLSHVQPYSGADQVTIADGH 321


>emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]
          Length = 1087

 Score = 98.6 bits (244), Expect(2) = 3e-35
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPS-LNVWHHRL 640
           D+ T  +L +G L+ GLY+  +     P   +++   +     +F ST  +   +WH+RL
Sbjct: 245 DRHTKMVLAQGKLENGLYKFPMFSNKKPYSSINN---ASAFHSHFXSTVENKAELWHNRL 301

Query: 641 GHPCNATFSNVMKQLHIPFSCNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           GH  +   S VM   ++     K + C  C++ K H +        +    +LVY+D+WG
Sbjct: 302 GHAASDIVSKVMNTCNVASRKYKSTVCFDCQLAKSHRLPTQLSNFHAFKSLELVYTDIWG 361

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA+  S    KY+I F+D+Y+R+TW Y L  K         F   +E QF TKIK
Sbjct: 362 PASVKSTFEAKYFILFVDDYSRYTWFYSLQTKDQXLPIFKRFKLQMENQFDTKIK 416



 Score = 79.7 bits (195), Expect(2) = 3e-35
 Identities = 41/110 (37%), Positives = 57/110 (51%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFVGLDAPSQFNPQAHLSEVSQYSPSLPQAMTASLPQA 330
           P CQ+CGK  H A  C+  FD+SF G    +              SPSL      ++   
Sbjct: 137 PQCQLCGKFGHTAQICYHXFDISFQGGQTIT--------------SPSLNNGNQNNIXAM 182

Query: 331 VNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGSDKLTVGQNNQS 480
           V  +S    D SWY+D GAS H+T  LGN +  SPY G+D++T+G +N +
Sbjct: 183 VASSSNSPADESWYLDFGASHHLTQNLGNXTSTSPYTGTDRVTIGNDNNA 232


>ref|XP_004513130.2| PREDICTED: uncharacterized protein LOC101488260, partial [Cicer
           arietinum]
          Length = 704

 Score =  129 bits (324), Expect(2) = 4e-35
 Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 1/174 (0%)
 Frame = +2

Query: 467 KTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLGH 646
           ++    LLKG +K GLYQL  ++                  C ++S   +   WH +LGH
Sbjct: 334 ESNGNALLKGKVKDGLYQLSSANSQVNKD-----------SCIYMSVKEN---WHRKLGH 379

Query: 647 PCNATFSNVMKQLHIPFSCNK-LSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWGP 823
           P N     V+K  ++  S N     CEAC+ GKLH + F S  S +  P DL++S VWGP
Sbjct: 380 PNNKVLEKVLKNCNVKTSSNDHFLLCEACQFGKLHLLPFTSSYSHAKEPLDLIHSGVWGP 439

Query: 824 AATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           A   S   +KYY+HF+D+++RFTWI+PL  K +       F +M+E QF  KIK
Sbjct: 440 APILSPSNFKYYVHFIDDFSRFTWIFPLKQKPETVHAFTQFKNMVENQFSKKIK 493



 Score = 48.5 bits (114), Expect(2) = 4e-35
 Identities = 30/99 (30%), Positives = 42/99 (42%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFVGLDAPSQFNPQAHLSEVSQYSPSLPQAMTASLPQA 330
           P CQ+C K  H   +CF RFD S+   +  ++ N Q + S                   A
Sbjct: 259 PTCQVCNKIGHTTVQCFYRFDKSYTCSNHYAENNKQENHS-------------------A 299

Query: 331 VNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGS 447
              + Y   D  WY DSGA+ HVT +   L   S  +G+
Sbjct: 300 FIASPYHGQDYEWYFDSGANNHVTHQNEKLQDLSESNGN 338


>gb|PKU76715.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1385

 Score =  145 bits (367), Expect = 5e-35
 Identities = 74/176 (42%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DKT+N ILL G    GLY         P + + ++L     Q   +S     N+WH RLG
Sbjct: 426 DKTSNNILLTGPCINGLY---------PLRPIKNKLAD-TSQLALISVQTVSNLWHRRLG 475

Query: 644 HPCNATFSNVMKQLHIPFSCNK--LSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVW 817
           HP  AT + + KQ   P  CN    + C +C++GK H + F    + SS PF+LV+SDVW
Sbjct: 476 HPSAATLATIEKQF--PIICNNSFTASCNSCRMGKSHRLPFQKSINNSSFPFELVHSDVW 533

Query: 818 GPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           GP+  PS  G++YY+ F+D+++++TWIYPL+ KSD +   L F  MIERQF T I+
Sbjct: 534 GPSHIPSNSGFRYYVSFIDDFSKYTWIYPLLQKSDVFYKFLEFTKMIERQFQTHIR 589


>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
          Length = 1000

 Score =  145 bits (366), Expect = 6e-35
 Identities = 77/175 (44%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T Q LLKG LK GLYQL      +     S++ P     C ++S   S   WH +LG
Sbjct: 402 DKLTGQTLLKGRLKDGLYQL------SDVSPQSNKDP-----CVYMSVKES---WHRKLG 447

Query: 644 HPCNATFSNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N     V+K  ++  S  ++ SFCEAC+ GKLH + F S  S    P  L++SDVWG
Sbjct: 448 HPNNKVLEKVLKDCNVKISPSDQFSFCEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWG 507

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S  G+KYY+HF+D+++RFTWI+PL  KSD     + F ++ E QF  KIK
Sbjct: 508 PAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIK 562


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score =  144 bits (362), Expect = 2e-34
 Identities = 74/175 (42%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T + LLKG LK GLYQ+          ++SS+  S    C ++S   S   WH +LG
Sbjct: 127 DKLTGKALLKGKLKEGLYQVS---------NVSSQ--SNKDACTYMSVKES---WHRKLG 172

Query: 644 HPCNATFSNVMKQLHIPFSCN-KLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N     V+K  ++  S + +  FCEAC+ GKLH + F S  S +  P DL+++DVWG
Sbjct: 173 HPNNKVLDKVLKHCNVKTSSSDQFKFCEACQFGKLHLLPFKSSYSHAQEPLDLIHTDVWG 232

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S  G+KYY+HF+D+++RFTWIYPL  KS+       F +++E QF  +IK
Sbjct: 233 PAPIMSNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFKTLVENQFNKRIK 287


>gb|PRQ51221.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1330

 Score =  121 bits (303), Expect(2) = 2e-34
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
 Frame = +2

Query: 464 DKTTNQILLKGALKG-GLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRL 640
           DK +  +L +G   G GL+         P  H             FV  +   ++WH RL
Sbjct: 470 DKASKALLYRGKSNGEGLFLFKTPKSIPPFHH---------DHTAFVGAAVKCSLWHQRL 520

Query: 641 GHPCNATFSNVMKQLHIPFSCNKLSF-CEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVW 817
           GHP +   S ++    + F+ ++ S  C  C  GK+H + F    SKS  PF  V+SD+W
Sbjct: 521 GHPSSDIVSRMLSLSQVKFNNDQTSHTCSHCLSGKMHRLPFSESISKSVLPFQKVHSDLW 580

Query: 818 GPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQF 970
           GPA   S +G+KYY+ F+D+YT+F W+YPL+ KSD +ST + F + +  QF
Sbjct: 581 GPAPCLSIEGFKYYVTFIDDYTKFVWVYPLINKSDTFSTFVKFHNFVSTQF 631



 Score = 54.3 bits (129), Expect(2) = 2e-34
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFVGLDAPSQFNPQA--------------HLSEVSQYS 288
           P CQIC K  H A  CF R D+    LD PS+                   H S  +   
Sbjct: 342 PECQICSKKGHTAINCFYRGDIP---LDHPSRSVVVCQICGLKGRVALNCHHRSNYAYQG 398

Query: 289 PSLPQAMTASLPQA-VNVTSYPATDNS-----WYVDSGASAHVTSELGNLSLKSPYHGSD 450
              P ++TA   +   +  S  ++ NS     W  D+GA+ H+TS+L NLS+  P+  ++
Sbjct: 399 SDPPNSLTAMTARTNCSGASSSSSSNSNNTEVWIGDTGATHHMTSDLRNLSIAHPFDSNN 458

Query: 451 KLTVG 465
            +T+G
Sbjct: 459 TITIG 463


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 1242

 Score =  144 bits (362), Expect = 2e-34
 Identities = 72/175 (41%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T + LLKG LK GLYQL  +             P+    C ++S      +WH +LG
Sbjct: 402 DKLTGKALLKGRLKDGLYQLSAN----------KEPPTNKDPCAYISLK---EIWHRKLG 448

Query: 644 HPCNATFSNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N     V+K  ++  S  +K +FCEAC+ GKLH + F +  S +  P DL+++DVWG
Sbjct: 449 HPNNKVLEKVLKDNNVKISPSDKFTFCEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWG 508

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S   +KYY+HFLD+++RFTWI+PL  KS+       F +++E QF  KIK
Sbjct: 509 PAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNLVENQFNKKIK 563


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  144 bits (362), Expect = 2e-34
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQH----LSSRLPSFVPQCNFVSTSPSLNVWH 631
           D +T  +L+ G LKGGLY  D +    P  +     S+ LPS  P      TSP   +WH
Sbjct: 450 DPSTRTVLMHGQLKGGLYVFDNTQLKLPLHNSSCFASTALPSKEPTVPASPTSP-FTLWH 508

Query: 632 HRLGHPCNATFSNVMKQLHIPFSCNKLS--FCEACKVGKLHSMSFPSIQSKSSAPFDLVY 805
           +RLGHP +   S V+ + ++P   NK+    C  C +GK+H  SF    S  + P +L++
Sbjct: 509 NRLGHPSSHIVSLVLNKCNLPH-LNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIH 567

Query: 806 SDVWGPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           +D+WGPA+TPS  G++YYIHF+D Y+RFTWIY L  KS+A+   L+F S +E Q   KIK
Sbjct: 568 TDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIK 627



 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 38/105 (36%), Positives = 55/105 (52%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFVGLDAPSQFNPQAHLSEVSQYSPSLPQAMTASLPQA 330
           P CQ+CG+  H+  +C+ RFD SF G        PQ +++ + Q    L +      P  
Sbjct: 284 PQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRPQGNMAHLHQ---QLSEXFFPGTPSV 340

Query: 331 VNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGSDKLTVG 465
              T+    DN+WY DSGA+ H+T  L NL  KS +  SD++ VG
Sbjct: 341 KPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVG 385


>dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subterraneum]
          Length = 1387

 Score =  142 bits (359), Expect = 6e-34
 Identities = 76/175 (43%), Positives = 100/175 (57%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T Q LLKG LK GLYQL            S++ P     C ++S   S   WH +LG
Sbjct: 402 DKLTGQTLLKGRLKDGLYQL------------SNKEP-----CVYMSVKES---WHRKLG 441

Query: 644 HPCNATFSNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N     V+K  ++  S  ++ SFCEAC+ GKLH + F    S    P  L++SDVWG
Sbjct: 442 HPNNKVLDKVLKDCNVKISHSDQFSFCEACQFGKLHLLPFKPSSSHVQEPLALIHSDVWG 501

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S  G+KYY+HF+D+++RFTWI+PL  KSD     + F ++ E QF  KIK
Sbjct: 502 PAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIK 556


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score =  142 bits (358), Expect = 7e-34
 Identities = 76/175 (43%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T +ILL+G +K GLYQL       P    S+     V    F S   +   WH +LG
Sbjct: 327 DKLTGRILLEGKIKDGLYQL-------PGGSTSTNKRPHV----FFSIKET---WHRKLG 372

Query: 644 HPCNATFSNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP +   + VMK  +I  S C    FCEAC+ GK H++ F +  S +  P DLV+SDVWG
Sbjct: 373 HPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWG 432

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S  G+KYY+ FLD+++RFTWIYPL  KSD +   + F +++E QF  +IK
Sbjct: 433 PAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIK 487


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
           [Trifolium pratense]
          Length = 835

 Score =  141 bits (355), Expect = 2e-33
 Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T + +L+G LK GLYQL     SA                 +VS   S   WH +LG
Sbjct: 409 DKLTGKAILRGILKDGLYQLSEKDSSA-----------------YVSIKES---WHRKLG 448

Query: 644 HPCNATFSNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N     V+K  ++  S  ++ SFCEAC+ GK+H + F +  S +    +LV++DVWG
Sbjct: 449 HPNNKVLDIVLKSCNVKLSPSDQFSFCEACQYGKMHFLPFKTSFSHAKEILELVHTDVWG 508

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S  G+KYY+HF+D++TRFTWIYPL  KSD     + F +M+E QF  KIK
Sbjct: 509 PAPIISSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFSKKIK 563


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  140 bits (354), Expect = 3e-33
 Identities = 76/176 (43%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T +++LKG LK GLYQL  +           R PS      FVS   S   WH RLG
Sbjct: 400 DKLTGKVILKGLLKDGLYQLSGT----------KRNPSA-----FVSVKES---WHRRLG 441

Query: 644 HPCNATFSNVMK--QLHIPFSCNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVW 817
           HP N     V++  ++ +P S N  SFCEAC+ GK+H + F S  S +  P +LV++DVW
Sbjct: 442 HPNNKVLDKVLESCKVKVPPSDN-FSFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVW 500

Query: 818 GPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           GPA   +  G+KYY+HF+D+++RFTWIYPL  KS+     + F ++ E QF  +IK
Sbjct: 501 GPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTENQFNKRIK 556


>gb|PNX78574.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 677

 Score =  140 bits (352), Expect = 3e-33
 Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T ++LL+G LK GLYQL      +     +++ P     C ++S   S   WH +LG
Sbjct: 404 DKLTGKVLLRGILKDGLYQL------SNGSSQTNKDP-----CVYLSVKES---WHRKLG 449

Query: 644 HPCNATFSNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N     V+K  ++  S  +K  FCEAC++GK H + F S  S +    +L+++DVWG
Sbjct: 450 HPSNNVLDKVLKICNVKTSPSDKFKFCEACQLGKSHLLPFKSSSSHAQEVLELIHTDVWG 509

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           PA   S  G+KYY+HF+D+ +RFTWIYPL  KSD     + F +M+E QF  +IK
Sbjct: 510 PAPINSISGFKYYVHFIDDSSRFTWIYPLKQKSDTIHAFMQFKNMVENQFNKRIK 564


>gb|PRQ49208.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1531

 Score =  125 bits (315), Expect(2) = 3e-33
 Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DK T  IL  G    GLY +       P    S  LP+  P   F+    S ++WH RLG
Sbjct: 480 DKVTGNILYDGLCDQGLYPI-------PVYVASKLLPASKPSA-FLGNKVSHSIWHKRLG 531

Query: 644 HPCNATFSNVMKQLHIPFSCNKL-SFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWG 820
           HP N   S+++ + HI    +K  S CE+C  GK   + F     KSS PF++++SD+WG
Sbjct: 532 HPSNVVVSSMLSKAHISVEPDKCTSLCESCLSGKFTKLPFSLSSEKSSIPFEIIHSDLWG 591

Query: 821 PAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           P+ + S +G+KYY   +DE TR+TWI+PL  K +A+     F + I  Q+   +K
Sbjct: 592 PSPSMSFEGFKYYFTLIDECTRYTWIFPLRNKREAFPLFQVFCAFIANQYSASVK 646



 Score = 45.8 bits (107), Expect(2) = 3e-33
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +1

Query: 157 CQICGKTNHLASKCFKRF-----DVSFVGLDAPSQFNPQAHLSEVSQYSPSLPQAMTASL 321
           CQIC K  H A KC +R      D S   ++      P  H+++  +Y   +P       
Sbjct: 374 CQICDKPGHGAWKCHQRNPQTQNDGSSSTIECQICKKP-GHIAKTCKYR--IPNNSNNHT 430

Query: 322 PQAVNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGSDKLTV 462
             +  V    +    W VDSGA+ H+TS+L NL   S Y+ +D + +
Sbjct: 431 GSSAMVACAESNHEVWLVDSGATNHMTSDLQNLQNVSSYNSNDGVQI 477


>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 264

 Score =  132 bits (332), Expect = 6e-33
 Identities = 70/168 (41%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
 Frame = +2

Query: 485 LLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLGHPCNATF 664
           +L+G LK GLYQL               L +    C +VS   S   WH RLGHP N   
Sbjct: 3   ILRGTLKDGLYQL---------------LRTERDPCAYVSVKES---WHRRLGHPNNKFL 44

Query: 665 SNVMKQLHIPFS-CNKLSFCEACKVGKLHSMSFPSIQSKSSAPFDLVYSDVWGPAATPSC 841
             V+K  ++  S  +  +FCEAC+ GK+H + F +  S +   F+LV++DVWGPA   S 
Sbjct: 45  DRVLKSCNVKLSPSDHFNFCEACQYGKMHFLPFKTSSSHAKEIFELVHTDVWGPAPVTSP 104

Query: 842 DGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
            G+KYY+HFLD+++RFTWIYPL  KSD       F +M E  F  +IK
Sbjct: 105 SGFKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNMAENLFNKRIK 152


>gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygrometricum]
          Length = 706

 Score =  139 bits (349), Expect = 7e-33
 Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 7/181 (3%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSP------SLNV 625
           D  T+ +LL+G L  GLY+ +L    +   H  + L S V        SP      +L+ 
Sbjct: 368 DPATHVVLLRGTLHNGLYRFNLKSRISGPLHSPACLQSSVSPIKVPDQSPLCLPQNTLDK 427

Query: 626 WHHRLGHPCNATFSNVMKQLHIPFSCN-KLSFCEACKVGKLHSMSFPSIQSKSSAPFDLV 802
           WH RLGHP  AT   V+   +   S N  +SFC +C++GK H + FP   +  SAPF++V
Sbjct: 428 WHLRLGHPSIATVKQVLLDCNERISKNDNISFCSSCQLGKNHLLPFPQSTTNFSAPFEVV 487

Query: 803 YSDVWGPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKI 982
           YSD+WGPA  PS +G +YYI F+D YTR+TWIY L  KS+   T +NF    E  F  KI
Sbjct: 488 YSDLWGPAHIPSRNGSRYYISFVDAYTRYTWIYFLKLKSEVTQTFINFQKYTELHFNAKI 547

Query: 983 K 985
           K
Sbjct: 548 K 548



 Score = 77.4 bits (189), Expect = 7e-12
 Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
 Frame = +1

Query: 151 PACQICGKTNHLASKCFKRFDVSFV----GLDAPSQFNPQAHLSEVSQYSPSLPQAMTAS 318
           P CQICG   H+A  C+ RFD  FV    G+   SQ        + ++ SPS P +  AS
Sbjct: 209 PVCQICGIPGHVAEICYYRFDKEFVPKSSGVSRTSQ-------QQFNRSSPSYPPSAFAS 261

Query: 319 LPQAVNVTSYPATDNSWYVDSGASAHVTSELGNLSLKSPYHGSDKLTVGQN---NQSNFA 489
                   S  A++  WY DSGAS HVT++LGNLS+ S Y G  K+ VG     + SN  
Sbjct: 262 ------TKSESASEEWWYPDSGASHHVTNDLGNLSVSSEYTGGSKVQVGNGAGLSISNIG 315

Query: 490 EGCSQGGPLST*SQPFL 540
           E      P    S+PFL
Sbjct: 316 ESNLNMFPS---SRPFL 329


>gb|PKU76601.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1385

 Score =  138 bits (348), Expect = 2e-32
 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
 Frame = +2

Query: 464 DKTTNQILLKGALKGGLYQLDLSHFSAPAQHLSSRLPSFVPQCNFVSTSPSLNVWHHRLG 643
           DKT N ILL G    GLY         P + + ++L     Q   +S     N+WH RLG
Sbjct: 426 DKTNNNILLTGPCINGLY---------PLRPVKNKLAD-TSQLALISVQTVPNLWHRRLG 475

Query: 644 HPCNATFSNVMKQLHIPFSCNKLSF---CEACKVGKLHSMSFPSIQSKSSAPFDLVYSDV 814
           HP   T + + KQ   P  CNK SF   C +C++GK H + F    + SS PF+LV+SDV
Sbjct: 476 HPSAVTLATIEKQF--PNICNK-SFTANCNSCRMGKSHRLPFQKSINNSSFPFELVHSDV 532

Query: 815 WGPAATPSCDGYKYYIHFLDEYTRFTWIYPLVAKSDAYSTVLNFISMIERQFCTKIK 985
           WGP+   S  G++YY+ F+D+++++TWIYPL+ KSD +   L F  MIERQF T I+
Sbjct: 533 WGPSQITSNYGFRYYVSFIDDFSKYTWIYPLLQKSDVFYKFLEFQRMIERQFQTHIR 589