BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00018518
         (1598 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subt...   452   e-140
dbj|GAU44059.1| hypothetical protein TSUD_399580 [Trifolium subt...   429   e-134
dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subte...   422   e-129
gb|KYP46236.1| Putative ribonuclease H protein At1g65750 family ...   394   e-128
dbj|GAU34086.1| hypothetical protein TSUD_255820 [Trifolium subt...   416   e-128
dbj|GAU14634.1| hypothetical protein TSUD_96980 [Trifolium subte...   412   e-128
gb|PNX74000.1| ribonuclease H [Trifolium pratense]                    394   e-127
dbj|GAU50545.1| hypothetical protein TSUD_409890 [Trifolium subt...   390   e-125
gb|PNX79261.1| ribonuclease H [Trifolium pratense]                    390   e-125
gb|PNX71244.1| ribonuclease H, partial [Trifolium pratense]           396   e-124
gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]           399   e-124
dbj|GAU24016.1| hypothetical protein TSUD_328180 [Trifolium subt...   386   e-123
gb|PNX71669.1| ribonuclease H [Trifolium pratense]                    385   e-123
dbj|GAU27143.1| hypothetical protein TSUD_104520 [Trifolium subt...   382   e-122
gb|KYP35971.1| Putative ribonuclease H protein At1g65750 family ...   375   e-120
dbj|GAU35274.1| hypothetical protein TSUD_274760 [Trifolium subt...   382   e-119
gb|PNY09839.1| ribonuclease H [Trifolium pratense]                    390   e-119
gb|PNX94516.1| ribonuclease H [Trifolium pratense]                    386   e-117
gb|PNY14982.1| ribonuclease H [Trifolium pratense]                    380   e-115
gb|PNX94875.1| ribonuclease H, partial [Trifolium pratense]           377   e-114

>dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subterraneum]
          Length = 1688

 Score =  452 bits (1163), Expect = e-140
 Identities = 216/519 (41%), Positives = 306/519 (58%), Gaps = 24/519 (4%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            VLIKSVAQ++PTYCMSVFLLP +LGEE+QRM+NS+WWGS +  GR INW+ WDKL + K 
Sbjct: 1168 VLIKSVAQSIPTYCMSVFLLPTTLGEEIQRMLNSFWWGSNRNNGRGINWLSWDKLTMRKE 1227

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GG+GFR+ + FNLA+L K GWK+ +N DT+++RI+KA+Y+PRG+FL + LG NPSF WR
Sbjct: 1228 HGGMGFRHLYGFNLAMLGKQGWKLATNHDTIVARIFKARYYPRGNFLEANLGHNPSFIWR 1287

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SI +S+ ++K G RW +GDGKSI++W D WLR+ +N ++T+  + G E + VH+L   G 
Sbjct: 1288 SIHTSQVIVKGGIRWRLGDGKSIRVWRDAWLRNEANSYVTTPMILGREDMCVHDLIEEGG 1347

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIID- 878
             EW  ++I   F +RD   IL  P+F +V+ D   W  S+ G Y+VKS Y   + +++D 
Sbjct: 1348 REWRRSLIMGSFNERDARCILSTPLFGDVQEDVPSWKHSRNGEYSVKSAYYYTMENLVDN 1407

Query: 877  ANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
              L   G W +IW+L+IP K+K FLWR  R CLPTRY L +KGV+    CA+C +  EN+
Sbjct: 1408 TGLRVEGNWGKIWELKIPQKMKVFLWRAARGCLPTRYRLQQKGVNCPHTCAYCQNNFEND 1467

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+F  C  A   W  + +   +     + + F      +LE  S           W IW
Sbjct: 1468 WHVFFGCVKAQEIWEEAGLWSFIEGMFESTEGFVSLFFSLLELLSQHKIILFVAAFWCIW 1527

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESG------------------ 392
            K+RN KIW +     + +++ A   +  W+ A+  +   ++                   
Sbjct: 1528 KRRNQKIWEDIELHPSVSLQLASDIIYQWKTAQTSHQRQQTSAAILPHSAATRNASGEER 1587

Query: 391  -----TAAVCAYWHPPKFAELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGE 227
                 T+AV   W PP    LKCN+DAA F++Q  FG GM +RD  G  I  +T W  G 
Sbjct: 1588 SVSVTTSAVRVIWTPPVQGMLKCNVDAAIFKEQNCFGAGMCLRDDKGNFIRAQTTWNYGN 1647

Query: 226  VAVMEGECRGLLEGLTWMKNLGLSKVTFEIDAKSVTDAL 110
                E E  GL   ++W++NLG   V  E+D K V D +
Sbjct: 1648 PLPYEAEAWGLKAAISWLRNLGYVNVVIELDCKLVVDGI 1686


>dbj|GAU44059.1| hypothetical protein TSUD_399580 [Trifolium subterraneum]
          Length = 1229

 Score =  429 bits (1104), Expect = e-134
 Identities = 213/541 (39%), Positives = 308/541 (56%), Gaps = 10/541 (1%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            VLIK+VAQA+P+YCM  FLLP +LGEE++RM+NS++WG+KK GGR INW+ WDK+   K 
Sbjct: 665  VLIKAVAQAVPSYCMGAFLLPTTLGEEIERMMNSFYWGTKKHGGRGINWLRWDKMTTCKE 724

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGL FR+   FNLA+L K GWK+ +N  +L++R+ KAKYFPR  FL + +G NPS+TWR
Sbjct: 725  NGGLNFRDLEGFNLAMLGKQGWKLITNSSSLLTRVLKAKYFPRNGFLEANIGHNPSYTWR 784

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SI S+  L+ LG RW IGDG +I +W  PW+R   N   T+        L V +LF P T
Sbjct: 785  SIQSTIPLLTLGYRWKIGDGSNINVWSAPWIRSRPNMRPTTAAHANYANLCVSDLFDPIT 844

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
            N W+  +I   F  +D   I +IP+ S    D +IW  S  GNYTVKS YK+ +      
Sbjct: 845  NSWNHTLIASIFNGQDTADICRIPLHSRALHDSIIWKSSPNGNYTVKSAYKLCLQLTSHD 904

Query: 874  NLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNW 695
            +    G W +IW +QIPPK+K+F WR+ R CLPTR  L  +GV+    CA C +  E+  
Sbjct: 905  SFNVSGDWRKIWTMQIPPKLKHFCWRMLRYCLPTRLKLHIRGVNCQTTCAVCSNATEDEL 964

Query: 694  HIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWK 515
            H+F  C  A++CW+  N+   +   ++    F+     +L       +A+   ILW+IW+
Sbjct: 965  HLFFDCPHAISCWKELNLWQRLEQKMHQSGSFSSIIFAILADLDADTQARFVAILWSIWR 1024

Query: 514  QRNSKIWNNR-------CATATDTIKQ---AISFMDTWRAARLKYPAHESGTAAVCAYWH 365
             RN  +W ++       C  ATD +       + +DT +++    P H          W 
Sbjct: 1025 TRNDCLWEHKQPSTVTTCRLATDIVSDYTWCCNMLDTTQSSP---PVHR---------WK 1072

Query: 364  PPKFAELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEG 185
             P+   LKCN+D A F  + KFG G+  R+  G ++   TM+FP EV V E E   L   
Sbjct: 1073 KPEANWLKCNVDGAIFSTEGKFGIGICFRNDQGILVQAHTMYFPFEVTVNECEASALKYA 1132

Query: 184  LTWMKNLGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRR 5
            L    + G  +V FE D+++V +++ +      E G ++ AC ++LS   +Y V +V R+
Sbjct: 1133 LLIALSSGFERVIFESDSQTVVNSILNDYRYENELGSLLSACKSLLSVIASYNVAFVRRQ 1192

Query: 4    A 2
            A
Sbjct: 1193 A 1193


>dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subterraneum]
          Length = 1601

 Score =  422 bits (1086), Expect = e-129
 Identities = 207/532 (38%), Positives = 298/532 (56%), Gaps = 1/532 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            VLIKSVAQ++PTYCMS FLLP +LGEE+QRMINS+WWG+ +  GR INW+ WDKL + K 
Sbjct: 1064 VLIKSVAQSIPTYCMSTFLLPTTLGEEIQRMINSFWWGTNRRQGRGINWLSWDKLTMRKE 1123

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GG+GFR+ + FNLA+L K GWK+ +N DT+++RI+KA+YFP       E+ S       
Sbjct: 1124 FGGMGFRHLYGFNLAMLGKQGWKLLTNQDTIVARIFKARYFPNCGASVMEVES------- 1176

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
                                    +W +PWLRD +N H+TS  V G E   + +L   GT
Sbjct: 1177 -----------------------IVWSEPWLRDEANSHVTSAMVQGWEHTRIIDLIHQGT 1213

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSII-D 878
              W+  +I   F  RD E+I ++P+      D+ IW ++  G YTVKS Y+  ++++I +
Sbjct: 1214 KSWNWELIGRLFNARDKEEISRLPIVGMEGKDKRIWRYNNKGIYTVKSAYRFAMDTLINN 1273

Query: 877  ANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
                 PG W  IW+L IP +VK FLWR+   CLPTR  L  +GV  T +C  C++  EN+
Sbjct: 1274 EQYKIPGDWMLIWKLSIPQRVKIFLWRIAIGCLPTRDRLQSRGVQCTDLCPHCETTYEND 1333

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+F+SC  A   WR +N+   V   V T     D+    L   +   +++  ++LW +W
Sbjct: 1334 WHLFVSCNKAHEVWREANLWDEVCSVVETVSCIKDFIFAALAALAEPRRSEFVMMLWCLW 1393

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAELKC 338
            K RN KIW ++       ++ A   +  WR AR +        +     W PP   ++KC
Sbjct: 1394 KCRNDKIWEDKVQPVRVGMQLARDMLYQWRNARRREDTTGHHDSHNVIQWQPPPIGKVKC 1453

Query: 337  NIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGL 158
            NIDAA F +Q KFG GM +RD +G  +  RT WF G    +E E   L E +TWM  L L
Sbjct: 1454 NIDAALFNEQHKFGLGMCIRDDHGIFVKARTKWFHGSPPPVEAEAWALKEAITWMGELEL 1513

Query: 157  SKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
            S+V  E+D   V +A+       +EFG +I  C+ +L + P +++ +V R+A
Sbjct: 1514 SRVVIELDCLLVVNAIKSNSNNQSEFGHIISDCHRLLENYPNFEISFVKRQA 1565


>gb|KYP46236.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 507

 Score =  394 bits (1011), Expect = e-128
 Identities = 188/477 (39%), Positives = 279/477 (58%), Gaps = 7/477 (1%)
 Frame = -2

Query: 1591 LIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNE 1412
            L+KSV Q++P+Y MSVFL+P SLG+E+QRM+NS+WWGS +  G+ I+W+ W+KL + K  
Sbjct: 37   LLKSVGQSIPSYYMSVFLIPSSLGDEIQRMLNSFWWGSNRHSGKGIHWLSWEKLSMRKEH 96

Query: 1411 GGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRS 1232
            GG+GFRN + FNLA+L K GWK  +N D +++R++KAKYFPRGDFL + LG NPSFTWRS
Sbjct: 97   GGMGFRNLYGFNLAMLGKQGWKFLTNQDAIVTRVFKAKYFPRGDFLGANLGHNPSFTWRS 156

Query: 1231 IWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTN 1052
            I +S+ ++  G RW IG+G  I  W DPWLR     ++TS    G E + + +L      
Sbjct: 157  IHASQVVVMGGMRWCIGNGLRINPWIDPWLRQQGKPYVTSLPSAGYEEIRIADLIDFENG 216

Query: 1051 EWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDAN 872
             W  ++I   F  RDV+ I  IP+    E D L W+ ++ G+Y+VKS Y +++ S++  +
Sbjct: 217  TWKFDLINRIFNQRDVDAIKDIPLLQLDEADTLTWNLNRKGSYSVKSAYYLIMESLLCNS 276

Query: 871  LV-CPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNW 695
            +   PG W ++W L IP  +K FLWR+ RDCLP+R  L +KGV  T +C  C++  ENNW
Sbjct: 277  ISRLPGDWKKLWALPIPHNMKIFLWRLLRDCLPSRQRLQQKGVPCTSLCPHCEAAQENNW 336

Query: 694  HIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWK 515
            HIF  C+ A   W+++ +   +   ++  +   +    +L   S S   ++ + L  IW+
Sbjct: 337  HIFFGCQEAQTVWQATGIWQHIKSLIDVGEGIVEVIFSLLGSISQSHIVEVVVTLSCIWR 396

Query: 514  QRNSKIWNNRCATATDTIKQAISFMDTWRAARLKY------PAHESGTAAVCAYWHPPKF 353
            +RN+K+W+     +     QA  +   W+AA+ +       P H+         W  P  
Sbjct: 397  RRNAKVWDQGAPPSGVATSQAKQYFRDWQAAQARSSTQRTPPVHD-------LQWKKPHA 449

Query: 352  AELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGL 182
                CNIDAA FQD   FG  M +R+ +G  +  +T W  G   V E E   LL  +
Sbjct: 450  GTFTCNIDAALFQDSSYFGYSMCIRNDHGQFLTAKTGWAHGLPPVHEAEATALLTAI 506


>dbj|GAU34086.1| hypothetical protein TSUD_255820 [Trifolium subterraneum]
          Length = 1362

 Score =  416 bits (1069), Expect = e-128
 Identities = 197/537 (36%), Positives = 307/537 (57%), Gaps = 6/537 (1%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            ++IKSV QA+P Y MS++LLP SL ++++RMIN++WWG   +  + I W+ W ++   K 
Sbjct: 791  IMIKSVLQAIPAYVMSIYLLPDSLIDDIERMINAFWWGGG-DNNKGIRWLAWKRMACPKE 849

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            EGGLGFR+F  FN+A+LAK GW + +NP++L+++++KA+YFP    L+S+LG+NPSFTWR
Sbjct: 850  EGGLGFRDFQLFNMAMLAKQGWNLINNPNSLVAKVFKARYFPHSSLLDSKLGNNPSFTWR 909

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIW SR+++  G RW IGDG +IK+  +PWLR      + S Q   +  L++ +L +P +
Sbjct: 910  SIWKSRKVLLHGCRWSIGDGSNIKVMGEPWLRVEDGGWVESPQNQCVYNLSIQQLMLPNS 969

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
              WD++ I   F +R    IL +P+   VE DR++W+    G Y+V+SGY+ L+     +
Sbjct: 970  KHWDVDKIHSLFSERVANMILAVPLLHLVERDRVVWNEESDGIYSVRSGYRKLLKEKNSS 1029

Query: 874  NLVCPG-VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
            +    G  W  +W++  PPK K+ LWR+C++CLPTR  L  + V     C FC    E  
Sbjct: 1030 SRPRGGEAWGALWKVHAPPKAKHLLWRICKECLPTRTRLRNRHVQCPIECPFCLVVPEEE 1089

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+F  CE     W S+ +  ++    + F   +D    +       +  K   +LW IW
Sbjct: 1090 WHMFFDCEGHKDAWSSAGLHQIIQTRFDKFYNISDLLFDICRLEDKQVAGKTATLLWCIW 1149

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESG-----TAAVCAYWHPPKF 353
            + RNS +WNN   +A     QA+   + W  A+     + S      T  V   W  P+F
Sbjct: 1150 QNRNSNVWNNNKLSAQQVGIQAVHLWNEWAMAQGMLDEYHSQDQQLLTPRVAVQWQQPQF 1209

Query: 352  AELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWM 173
              +KCN+DA+F+      G G  VRDH G  I+  T      + ++EGE   + E +  M
Sbjct: 1210 GIVKCNVDASFYDIAGATGWGWCVRDHQGRYIIAGTNLLQARLNILEGEAMAIKEAMEEM 1269

Query: 172  KNLGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
               G S V FE D+K V DA+  ++E  ++F  +I +  ++L S P ++V++V R+A
Sbjct: 1270 LQRGFSHVIFESDSKIVVDAISSRQEGISDFSLLISSIQSLLMSNPNFEVKFVKRQA 1326


>dbj|GAU14634.1| hypothetical protein TSUD_96980 [Trifolium subterraneum]
          Length = 1194

 Score =  412 bits (1059), Expect = e-128
 Identities = 197/537 (36%), Positives = 306/537 (56%), Gaps = 6/537 (1%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            ++IKSV QA+P Y M+++LLP SL  +++RMIN++WWG   +  + I W+ W+KL  +K 
Sbjct: 623  IMIKSVLQAIPAYVMNIYLLPDSLINDIERMINAFWWGGG-DNNKGIRWLAWNKLTCTKE 681

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            EGGLGFR+F  FN+A++AK GWK  +NP++L++RI+KA+YFPR  FL+S LG+NPSF WR
Sbjct: 682  EGGLGFRDFQKFNMAMVAKQGWKFLNNPNSLVARIFKARYFPRSSFLDSCLGTNPSFIWR 741

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIW SRQ++  G RW IGDG +IK+  +PWLR      + + Q   +  L++ +L IP  
Sbjct: 742  SIWKSRQVLLQGCRWSIGDGSNIKVMGEPWLRVEDGRWVAAPQKQDVYNLSIQQLMIPNL 801

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
             +WD+  I   F + +  +I+ +P+   VE DR+IW     G Y+V+SGY+ L+      
Sbjct: 802  KQWDVEKINLLFPENEAHKIIAVPLLHMVEADRVIWSAESNGVYSVRSGYRKLMQESNST 861

Query: 874  NLVCPG-VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
                 G  W  + ++Q P K K+ LWR+C+DCLPTR  L  + V     C+ C  + E  
Sbjct: 862  FRQTEGEAWGDLCKVQAPLKAKHLLWRICKDCLPTRTRLRNRYVQCLIECSLCVLEPEEE 921

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+F  CE ++  W    + H++    + F+   D    +    +  +  K+  +LW +W
Sbjct: 922  WHMFFECEGSIDAWSVVGLNHIILPRSHKFNNIRDLLFDICRYENKQVAGKMATLLWCLW 981

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAVCA-----YWHPPKF 353
            + RN+K+W N   +A     QA    + W   +      +SG   + A      WH P+F
Sbjct: 982  QNRNNKVWKNNKLSAQQVGVQAAHMWNEWSVVQGISSEQQSGEQQLVANRPTIQWHNPRF 1041

Query: 352  AELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWM 173
              +KCN+DA+FF      G G  VRDH G  I+  +      + ++EGE   + E +  M
Sbjct: 1042 GYVKCNVDASFFNIAGATGWGWCVRDHQGRFIIAGSNIMQARLNILEGEAMAIKEAMIEM 1101

Query: 172  KNLGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
               G S V  E D+K+V DA+   +   +EF  +I +  ++L S P ++V++V R+A
Sbjct: 1102 TQKGFSHVIIESDSKTVIDAISSSQVGISEFSLLISSIKSLLVSNPNFEVKFVKRQA 1158


>gb|PNX74000.1| ribonuclease H [Trifolium pratense]
          Length = 652

 Score =  394 bits (1012), Expect = e-127
 Identities = 201/584 (34%), Positives = 302/584 (51%), Gaps = 53/584 (9%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            ++IKSV QA+P Y M+++LLP SL  +++RMIN++WWG      + I W+ WDK+   K 
Sbjct: 36   IMIKSVLQAIPAYVMNIYLLPDSLVNDIERMINAFWWGGGSNN-KGIRWLAWDKMAWPKE 94

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGLGFR+FH FN+A++AK GW   + P++L++RI+KA+YFP+    +S LG NPSFTWR
Sbjct: 95   MGGLGFRDFHMFNMAMVAKQGWNFINKPNSLVARIFKARYFPQSSLFDSSLGHNPSFTWR 154

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIW SRQ++  G RW IGDG  IK+  +PWLR      + S Q  GM  LT+  L +P  
Sbjct: 155  SIWKSRQVLTNGCRWRIGDGSKIKVMGEPWLRVEDGCWLASPQCEGMYNLTIKHLMLPDN 214

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
             +WD   ++  F ++D   IL +P+   VE D++IW+    G YTV+SGY+ L+      
Sbjct: 215  KQWDDEKVKLLFSEKDANMILAVPLVHLVEEDKIIWNEESDGLYTVRSGYRKLMKE--KM 272

Query: 874  NLVCP---GVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLE 704
             LV P     W  +W++Q PPK K+ LWR+C++CLPTR  L  + V  ++ C  C  + E
Sbjct: 273  VLVGPREENTWGSLWKIQAPPKAKHLLWRICKECLPTRTRLRSRFVMCSEECPICLREPE 332

Query: 703  NNWHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWN 524
              WH+  SCE     W    + H++   +N    F D    +    S  +  ++ ++L N
Sbjct: 333  EEWHLLFSCEGIKDAWNVMGLYHIMQTRLNHCHNFKDLIFDICRNESKQVAGRVAVLLRN 392

Query: 523  IWKQRNSKIWNNRCATATDTIKQAISFMDTW--------------------RAARLKYP- 407
            IW+ RN+ +WNN  ++A     QA    + W                    R  +   P 
Sbjct: 393  IWQNRNNYVWNNNKSSAQQIGMQAAHMWNEWAMVQGLFEEQQTQEQQQQMHRPQQYSTPQ 452

Query: 406  -----------------------------AHESGTAAVCAYWHPPKFAELKCNIDAAFFQ 314
                                         A    TA     W  P    +KCN+DA+F+ 
Sbjct: 453  QHIYQSQHEQRHQRHGQQQSLHIQQQCTRAQHQQTAPTVQQWRNPPPGVVKCNVDASFYD 512

Query: 313  DQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLGLSKVTFEID 134
              +  G G   RDH+G  I+  T     ++  +EGE   + E +  M   GLS V FE  
Sbjct: 513  TVKATGWGWCARDHHGRFIIAGTNIMYSKLNTIEGEAMAIKEAMEEMIQRGLSHVIFESX 572

Query: 133  AKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
             K V DA+  ++   +EF  +I    ++L   P+++V++V R+A
Sbjct: 573  XKIVVDAISSRQIGISEFSMLISCIKSLLLLNPSFEVKFVKRQA 616


>dbj|GAU50545.1| hypothetical protein TSUD_409890 [Trifolium subterraneum]
          Length = 607

 Score =  390 bits (1001), Expect = e-125
 Identities = 185/541 (34%), Positives = 291/541 (53%), Gaps = 10/541 (1%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV Q++ +Y MSV+L+P    ++++RMINS+WWG  +   R I W+ WD++   K 
Sbjct: 36   VMIKSVLQSILSYVMSVYLIPEMTIKKIERMINSFWWGGGRANNRGIKWLAWDRMTYPKE 95

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGLGFRN H FN+A++AK GW     P +L++++YKA+YFP      + LG+NPS+ WR
Sbjct: 96   YGGLGFRNLHLFNMAMVAKQGWNFIMKPHSLVAKVYKARYFPNSSLFEAHLGNNPSYAWR 155

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIW SR ++  G RW IGD   IK+  +PWLR      + S Q  G   + V++L +P  
Sbjct: 156  SIWKSRHVLMNGCRWRIGDVTKIKVMNEPWLRKEDGLWVQSPQQQGAFDMFVNQLMLPNE 215

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
              WD N I   F     + IL +P+F   E D+LIW +   GNY VKSGY +L+N II A
Sbjct: 216  KVWDSNKIHTLFPLHIAKSILDVPLFDQFEEDKLIWLYDTHGNYNVKSGYNLLLNPIICA 275

Query: 874  NLVCPGVWSR-IWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
               C     + +W++Q PPK K+ LWR+C++CLPTR  L  + V+    C  C ++ E++
Sbjct: 276  VTPCENEELKWLWKIQAPPKAKHLLWRICKECLPTRTRLRERFVNCPLECPMCGNETESD 335

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH    C  +   W+++ +  +++  V       +  +K+  G+      K+ +++W +W
Sbjct: 336  WHFLFDCMDSKRAWQTAGLEAIISSQVQQHMTVKEALLKLCRGTDVQNAGKLAMVVWALW 395

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRA---------ARLKYPAHESGTAAVCAYWH 365
              RN+ +WN+   +      +       WR           RL+   H +        W 
Sbjct: 396  NNRNNWVWNHTKESGQQLGVKTTCLWSEWRVVQDSNNISRTRLQVQQHIA--------WQ 447

Query: 364  PPKFAELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEG 185
             P     KCN+DA F   + K   G  VRD+ G  I+  T+W P + +++EGE   +LE 
Sbjct: 448  KPLHGHYKCNVDAGFHDAEGKTSAGWCVRDYMGRFIMAGTVWMPEKCSIIEGEAMAMLEA 507

Query: 184  LTWMKNLGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRR 5
            +  ++  G + V FE D+K+V DA+       ++F  ++     ILS    + V+ + R+
Sbjct: 508  MKELERQGFTNVIFETDSKNVADAIQSMHNGVSDFSVIVTKIRCILSLNSDFVVKSIKRQ 567

Query: 4    A 2
            A
Sbjct: 568  A 568


>gb|PNX79261.1| ribonuclease H [Trifolium pratense]
          Length = 620

 Score =  390 bits (1001), Expect = e-125
 Identities = 187/533 (35%), Positives = 293/533 (54%), Gaps = 2/533 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV QA+PTY MSV+LLP S  ++++RM+NS+WWG      + I W+ WD++   K 
Sbjct: 53   VMIKSVLQAIPTYVMSVYLLPDSTVKDIERMLNSFWWGGGANN-KGIRWLAWDRMTYPKT 111

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            +GGLGFR+ H FNLA++AK GW I + P TL+SR+YKA+YFP      S++G NPS+ WR
Sbjct: 112  QGGLGFRDIHMFNLAMIAKQGWNIMTKPHTLVSRLYKARYFPNSSLFESKIGHNPSYAWR 171

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
             IW +R+++  G RW IG G SIKI  +PWLR   +  + S Q+ G+   T ++L +P  
Sbjct: 172  GIWKAREILMNGCRWSIGSGTSIKIMSEPWLRGQGSVWLPSPQIQGVHNFTTNDLMLPNM 231

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
              WD   IE  F       IL+ P+   +E D+LIW     G Y+VKSGYK+L+      
Sbjct: 232  KVWDKEKIESIFPMHIANCILETPLLDIIENDKLIWADDMHGQYSVKSGYKLLLTGTGKV 291

Query: 874  NLVCPGV-WSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
            ++      WS +W +  PPK K+ LWR+ + CLPTR  L  + V  + +C  C+   E++
Sbjct: 292  DVGSQQKDWSSLWSILAPPKAKHLLWRIVKGCLPTRMRLQERRVPCSLLCPLCNQHNEDD 351

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+F  C  +    +++ +  ++   +  F   AD    +    +        +++W +W
Sbjct: 352  WHVFFGCATSHQARQAAGLEQIITPRLQQFCSVADMIFSICLTENKETAGTFAMLVWILW 411

Query: 517  KQRNSKIWNNRCATATDT-IKQAISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAELK 341
              RN+ +WN+     T   +K    + + +  A+++    +         W  P     K
Sbjct: 412  NNRNNCVWNDNNEPGTSLGVKTRHLWNEWFSVAQVQQNRSQIAQQQQDTRWQKPVQGWYK 471

Query: 340  CNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLG 161
            CN+DAAF +++ +   G  +RD  G  ++  T W  G  +++EGE   LLE L  ++  G
Sbjct: 472  CNVDAAFHKERNRSSFGWCLRDDEGRFVMAETTWLNGNCSIIEGESIALLEALKVLEQRG 531

Query: 160  LSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
            +S V FE D+KSV DA+ +     +EF  +I      L   P +KV+++ R+A
Sbjct: 532  ISHVIFETDSKSVVDAIHNLRSGSSEFSSIICLIKNTLLCNPNFKVKFIKRQA 584


>gb|PNX71244.1| ribonuclease H, partial [Trifolium pratense]
          Length = 917

 Score =  396 bits (1017), Expect = e-124
 Identities = 193/539 (35%), Positives = 294/539 (54%), Gaps = 8/539 (1%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV QA+P+Y MSV+LLP  + ++++RM+NS+WWG      + I W+ WD++ + K+
Sbjct: 350  VMIKSVLQAIPSYVMSVYLLPDGVIKDIERMMNSFWWGGGANN-KGIRWLAWDRMTIPKD 408

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            +GG+GFR+ H FNLA++AK GW I + P T+++++YKA+YFP      S+LG NPS+ WR
Sbjct: 409  QGGMGFRDLHSFNLAMIAKQGWNIMTKPHTILAKLYKARYFPNSSLFESKLGHNPSYAWR 468

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
             IW +RQ++  G RW +G+GK+IK+  +PWLR  +   + S Q  G+    V++L +   
Sbjct: 469  GIWKARQILMNGCRWRVGNGKNIKVMSEPWLRGENGAWLPSPQDQGVHNYNVNDLMMSNV 528

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLV---NSI 884
              WD + IE  F      +IL IP+F  VE D+L+W  S  GNY VKSGYK+++     +
Sbjct: 529  TMWDKDKIESLFSIHIANRILGIPLFDMVEEDKLLWIDSTNGNYNVKSGYKLMMKIAGKV 588

Query: 883  IDANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLE 704
             DA       W  +W +Q PPK K+ LWRV + CLPTR  L  + V    +C  C+ + E
Sbjct: 589  HDAPQ--QAAWRDLWSIQAPPKAKHLLWRVSKGCLPTRLRLQERQVSCPLLCPVCNQENE 646

Query: 703  NNWHIFLSCEFAVACWRSSNMLH----LVNHWVNTFDLFADWCVKMLEGSSNSIKAKICL 536
            ++WH+F  CE +   W+++ +L      + H  N   L    C                +
Sbjct: 647  DDWHVFFGCEISKQAWQAAGILQNLEARLQHNNNANQLIHTIC----STEDKETAGMFAM 702

Query: 535  ILWNIWKQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAV-CAYWHPP 359
            + W +W  RN+ +WN+          +A    + W + +     H           W  P
Sbjct: 703  LAWVLWNNRNNMVWNDTNEPGRSLGIKARVLWEEWNSVQQVQQGHSRHEQQQHTTRWQTP 762

Query: 358  KFAELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLT 179
                 KCN+DA F Q   K   G V+RD  G  ++  T W  G  ++MEGE   L++ L 
Sbjct: 763  DPGWYKCNVDAGFHQAINKTSTGWVLRDDRGRFVMAETTWMEGNCSIMEGESIALIKALE 822

Query: 178  WMKNLGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
             +   G+SKV FE D+KSV DA+       +EF  +I   N I+   P +KV+++ R+A
Sbjct: 823  TLSQRGISKVIFETDSKSVVDAVHRLHSGSSEFSLLISHINKIMLCNPNFKVKFIKRQA 881


>gb|PNX97216.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1094

 Score =  399 bits (1024), Expect = e-124
 Identities = 190/534 (35%), Positives = 292/534 (54%), Gaps = 3/534 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            ++IKSV QA+P+Y MSV+LLP +   E++RM+NS+WWG      + I W+ WD++   K 
Sbjct: 558  IMIKSVLQAIPSYVMSVYLLPETTINEIERMMNSFWWGGGANN-QGIRWLAWDRMAFPKA 616

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGLGF++ H FNLA++AK GW I + P TL++RIYKA+YFP     N+ LG NPS+ WR
Sbjct: 617  LGGLGFKDLHTFNLAMIAKQGWNIMTKPHTLVARIYKARYFPNSSLFNANLGHNPSYAWR 676

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIW +R ++  G RWIIG G +I +  DPWLR+     I S QV G   + V++L +P  
Sbjct: 677  SIWKARHILMNGCRWIIGKGTNINVMGDPWLREKEGAWIQSPQVQGAHKINVNDLLLPNE 736

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
             +WD   IE  F    V  IL IP+F  VE D+LIW+ S  G Y+VKSGY M++N+    
Sbjct: 737  KKWDKEKIESLFSSDVVSNILDIPLFDMVEEDKLIWNDSLHGQYSVKSGYNMMLNNTGRV 796

Query: 874  NLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNW 695
              +    W  +W++  PPK K+ LWR+C+ CLPTR  L  + V    +C  C+   E++W
Sbjct: 797  EEMTQENWQYLWKIHAPPKAKHLLWRICKGCLPTRTRLQERRVTCPLLCPLCEQSNEDDW 856

Query: 694  HIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWK 515
            HI  +C  ++   +++ +  ++   +  +    D    +             ++LW +W 
Sbjct: 857  HILFNCNDSLQARQAAGLEQVIAARMQQYHTTQDVIKSICHDMDRDTAGLFAVLLWVLWN 916

Query: 514  QRNSKIWNNRCATATDTIKQAISFMDTWRAARLKY---PAHESGTAAVCAYWHPPKFAEL 344
             RN K+WN           +A      W + + ++   P  E     V   W  P     
Sbjct: 917  NRNDKVWNGSTEAGRSLGLKARQLWCEWYSVQTQWQQRPGAEQQQQQVLT-WQKPPTGWY 975

Query: 343  KCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNL 164
            KCN DA F+ +  K   G  +RDH G  +   T+W  G+ +++EGE   LLE +  +K+ 
Sbjct: 976  KCNADAGFYNELNKSSAGWCLRDHTGSFVKAGTIWNEGKCSIIEGEALALLEAMKAVKDR 1035

Query: 163  GLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
            G++   FE D+K+V DA+ +     +EF  +I     ++   P + V+++ R+A
Sbjct: 1036 GITHAIFETDSKNVVDAIHNLRGGTSEFSSLICDIKNVMMFNPNFVVKFIKRQA 1089


>dbj|GAU24016.1| hypothetical protein TSUD_328180 [Trifolium subterraneum]
          Length = 659

 Score =  386 bits (991), Expect = e-123
 Identities = 187/532 (35%), Positives = 293/532 (55%), Gaps = 2/532 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            ++IKSV QA+P+Y MSV+LLP S  +E++RM+NS+WWG      + I W+ WDK+   K 
Sbjct: 92   IMIKSVLQAIPSYVMSVYLLPESTIKEIERMMNSFWWGGGANN-KGIQWLSWDKMTSPKA 150

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGLGFR+ H FNL ++AK GW I + PDTL++++YKA+YFP   F +S++G NPS+ WR
Sbjct: 151  LGGLGFRDLHSFNLEMIAKQGWNIMTKPDTLVAKLYKARYFPNSSFFDSQIGHNPSYAWR 210

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
             IW +R+++  G RW IG+G +IK+  +PWLRD     I S Q   +  +TV +L     
Sbjct: 211  GIWKARKILMNGCRWSIGNGANIKVMSEPWLRDKEEAWIPSPQAHSVYDITVKDLMNTHE 270

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
              W+   IE  F      +I+  P+   +  D+LIW  +  G+Y+VKSGY +++N     
Sbjct: 271  KTWNKEKIESLFPLHVAIRIINTPLCDMIVEDKLIWIDNVHGHYSVKSGYNLMLNVTGRV 330

Query: 874  NL-VCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
            ++ +  GVW R+WQ+  PPK K+ LWR+C+DCLPTR  L  K V     C  CD   EN+
Sbjct: 331  SVSIQQGVWKRLWQIHAPPKTKHLLWRICKDCLPTRTRLQEKHVPCQLSCPVCDQGYEND 390

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH    C  ++   R++ + H++   +  ++   D    +     N +  +  +++W IW
Sbjct: 391  WHALFDCYDSIQAARAAGLEHVIQPRIQQYNNAGDVIRHICATEDNQVAGQFAMLIWVIW 450

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAA-RLKYPAHESGTAAVCAYWHPPKFAELK 341
              RN+ +WN+          +A    + W +  +L+     +        W  P      
Sbjct: 451  NNRNNSLWNDSKEPGRSLGIKARLLWEEWNSVHQLQQQQQTTSQQQHIQSWQKPPVDWYT 510

Query: 340  CNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLG 161
            CN+DA F ++  K   G  V DH G  ++  T W  G  +++EGE   LLE L  M++ G
Sbjct: 511  CNVDAGFNRNSNKTSFGWCVHDHLGEFVVAGTGWREGNHSIVEGESLALLEALKEMESRG 570

Query: 160  LSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRR 5
            +S V FE D+ SV +A+      ++EF  +I     +L   P + V+++ R+
Sbjct: 571  ISHVNFETDSMSVVNAIRHLRGGYSEFSAIISNIKNVLLLHPNFAVKFIKRQ 622


>gb|PNX71669.1| ribonuclease H [Trifolium pratense]
          Length = 659

 Score =  385 bits (988), Expect = e-123
 Identities = 186/533 (34%), Positives = 295/533 (55%), Gaps = 2/533 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV QA+P+Y MSV+LLP S  ++++RM+NS+WWG      + I W+ WD++   K 
Sbjct: 92   VMIKSVLQAIPSYVMSVYLLPDSTIKDIERMMNSFWWGGGSNN-KGIRWLAWDRMIHPKT 150

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGLGFR+ + FNLA++AK GW + + P TL++++YKA+YFP      +++G NPS+ WR
Sbjct: 151  RGGLGFRDIYAFNLAMIAKQGWNLMTKPHTLVAKLYKARYFPNSTLFEAKIGHNPSYAWR 210

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
             IW SR+++  G RW +G G +IK+  +PWLR   N  + S Q  G+  LTV++L +P  
Sbjct: 211  GIWKSREILMNGCRWSVGSGTNIKVMSEPWLRGQGNAWLPSPQTQGVHNLTVNDLMVPNM 270

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
              WD   I+  F    V  IL+ P+   +E D+LIW     G+Y+VKSGYK+++N    A
Sbjct: 271  KMWDKAKIDSIFPLHIVNCILETPLHDMLENDKLIWADDMHGHYSVKSGYKLMMNVTGKA 330

Query: 874  NL-VCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
            ++      W  +W ++ PPK K+ LWR+ + CLPTR  L  K V    +C  C+   E++
Sbjct: 331  DMSFQQRDWGSLWAIRSPPKAKHLLWRIAKGCLPTRMRLQEKRVSCPLLCPLCNQHNEDD 390

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+   C  +    +S+ +  ++   +  F   +D    +    S        +++W +W
Sbjct: 391  WHVLFGCATSSQARQSACLEQVILPRLQRFSSASDVIFDICSNESQETAGSFAMLVWVLW 450

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTW-RAARLKYPAHESGTAAVCAYWHPPKFAELK 341
              RN+ +WN+   + +    +A      W   A+++  + +S        W  P     K
Sbjct: 451  NNRNNCVWNDMNESGSCLGIKARHLWAEWLSVAQVQQSSSQSDQNQQATRWQKPVQGWYK 510

Query: 340  CNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLG 161
            CN+DAAF ++Q +   G  +RD  G  +   T W  G  +++EGE   LLE L  ++  G
Sbjct: 511  CNVDAAFHKEQNRTSFGWCIRDDEGQFVKAETAWMMGNCSIVEGESLALLEALKALEQSG 570

Query: 160  LSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
             + V  E D+K+V DA+       +EF  +IR  N IL   P +KV++V R+A
Sbjct: 571  KTHVIIETDSKNVVDAIRHLRGGSSEFSSIIRLINNILLCNPNFKVEFVKRQA 623


>dbj|GAU27143.1| hypothetical protein TSUD_104520 [Trifolium subterraneum]
          Length = 699

 Score =  382 bits (982), Expect = e-122
 Identities = 182/511 (35%), Positives = 277/511 (54%), Gaps = 2/511 (0%)
 Frame = -2

Query: 1546 VFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKNEGGLGFRNFHYFNLAL 1367
            ++L+P +  +E++RM+NS+WWG     G  I W+ WD++   K  GGLGFRN H FN+A+
Sbjct: 120  MYLIPETNIKEIERMLNSFWWGGGSNNGG-IKWLAWDRIPYLKAYGGLGFRNLHLFNMAM 178

Query: 1366 LAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWRSIWSSRQLIKLGTRWI 1187
            +AK GWK  +NP++L++R+YKA+YFP   F  S LG+NPS+ WRSIW SRQ++  G RW 
Sbjct: 179  VAKQGWKFATNPNSLVARVYKARYFPNSTFFASHLGNNPSYAWRSIWKSRQVLMNGCRWR 238

Query: 1186 IGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGTNEWDMNIIEEYFCDRD 1007
            IGDG  I +  +PWLR      + S Q   +  L V++L +P    WD N I   F    
Sbjct: 239  IGDGTKINVTNEPWLRMEDGKWMQSPQDHEVSNLYVNQLMLPNEKVWDSNKIHTLFSSNV 298

Query: 1006 VEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDANLVCPGV-WSRIWQLQ 830
               IL +P+F N+  D L+W     GNY VKSGY +L+ S ++A+ +     W  +W++Q
Sbjct: 299  ANSILAVPLFDNIGEDYLVWDDDTHGNYNVKSGYNLLLQSTLEASAIQEEEDWKWLWKIQ 358

Query: 829  IPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENNWHIFLSCEFAVACWRS 650
             PPK K+ LWR+CR CLPTR  L  + V  T  C  C+ + EN+WH+   CE +   WRS
Sbjct: 359  APPKTKHLLWRICRGCLPTRSRLKERNVQCTTSCPICEEEEENDWHLLYDCETSKRAWRS 418

Query: 649  SNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIWKQRNSKIWNNRCATAT 470
            + ++H++   V       +  +K+   S      K  +++W +WK RN+ +WN+      
Sbjct: 419  AGIVHIIQPHVQQAITTKECIMKLCRNSDRKEAGKAAMLIWMLWKNRNNCVWNHEKEQGQ 478

Query: 469  DTIKQAISFMDTWRAARLKYPAHESGTAAVCAYWHPPKFAELKCNIDAAFFQDQRKFGCG 290
            +   +A+S+   W A +  Y +  +        W  P   + KCN+D       RK   G
Sbjct: 479  ELGIKALSYWHEWEAVQNTYSSGRNQVQKQLLSWKTPPQGKHKCNVDMGCNAAARKTSAG 538

Query: 289  MVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWM-KNLGLSKVTFEIDAKSVTDA 113
              VRD+ G  +   + W  G+ ++ EGE   LLE +  + +  G   V FE DA+++  A
Sbjct: 539  WCVRDYRGQFVFGGSSWIHGKCSINEGEALALLEAMKELQQQRGFKDVIFETDAQNIVYA 598

Query: 112  LGDKEERHTEFGRMIRACNAILSSEPTYKVQ 20
               +    +EF  +I     ILS    ++ Q
Sbjct: 599  FHHRNTGRSEFSSIIHKIKCILSLNSDFEWQ 629


>gb|KYP35971.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 606

 Score =  375 bits (964), Expect = e-120
 Identities = 192/533 (36%), Positives = 282/533 (52%), Gaps = 2/533 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            VLIKS  QA+P Y MS FL+P+SL EE+QRM+NS+WWGS    GR I W+ W+KL V   
Sbjct: 63   VLIKSFVQAIPAYYMSAFLIPISLEEEIQRMLNSFWWGSNSRSGRGIQWLNWEKLTVR-- 120

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
                                 W++ +NPD + +RI+KA+YFP+G FL + LG NPS+ WR
Sbjct: 121  ---------------------WRLLTNPDAIFTRIFKARYFPQGYFLGARLGHNPSYVWR 159

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SI  S+ +I+ G RW +G G SIK+W DPWLR  SN  I+S  ++G++ L V +L     
Sbjct: 160  SIHESQAIIQEGVRWCVGSGSSIKVWTDPWLRLSSNPFISSPTISGLDHLKVKDLIDHNM 219

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSII-D 878
              W+  I+      RD + I  IP+F   + D + W  ++ G YT+KS Y  L+  +  +
Sbjct: 220  GRWNTTILSALCNQRDNQVIQAIPLFHLQDSDMISWSHTRNGMYTIKSAYYQLMEHLTPN 279

Query: 877  ANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
             +L  PG WS +W ++ P   K FLWRV R CLPTR NL R+ V  T +C  C + +EN 
Sbjct: 280  VDLRIPGNWSMLWSMKAPNTKKIFLWRVLRGCLPTRLNLQRRHVPCTMLCPTCSAGIENE 339

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WHIF  C  A   W +S     ++  +   D       ++L+  S S    +  ++W IW
Sbjct: 340  WHIFFECVEAKDIWAASGFWPKISQIIADSDGIQQAIFQLLQCLSPSEALDLLCLMWGIW 399

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAAR-LKYPAHESGTAAVCAYWHPPKFAELK 341
            ++RN  +WNN+   +   I  A   +  W +AR  +     +    +C +  PP++  +K
Sbjct: 400  RKRNDILWNNKVTPSHTVIFLARQRISEWMSARETQQIPKVARNDPICWFKPPPEY--MK 457

Query: 340  CNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNLG 161
            CN+D   F D    G    +RD  G      T W+ G +   E E    LE +TW+ N  
Sbjct: 458  CNVDVTIFTDSNCCGFAFYIRDDLGRFKAATTGWYNGSLPPNEAEAMACLEAITWLANSH 517

Query: 160  LSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
              KV  E+D K V D L D     +E+GR+     ++L+     +V++V R+A
Sbjct: 518  YEKVLIELDCKKVVDDLYDSTSLFSEYGRLSYKGRSLLALHKNLEVRFVRRQA 570


>dbj|GAU35274.1| hypothetical protein TSUD_274760 [Trifolium subterraneum]
          Length = 885

 Score =  382 bits (980), Expect = e-119
 Identities = 191/514 (37%), Positives = 297/514 (57%), Gaps = 4/514 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            VLIKSV Q +P+Y MS+FL+P S+ +++++M+NS+WWG  +   + I W+ W++L V K 
Sbjct: 352  VLIKSVLQTIPSYIMSIFLIPSSVIDDIEKMLNSFWWGHNRAQSKGIRWMSWERLSVHKQ 411

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            +GG+GF++   FN A+L K  W + + PDTL+++++KAKYFP  DFL S +G NPS+ WR
Sbjct: 412  DGGMGFKSLGAFNHAMLGKQAWNLITKPDTLVAKLFKAKYFPHSDFLESSIGHNPSYVWR 471

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIWSS+ ++K G +W IG G +I +W+  WL D ++        + +  LTV +L     
Sbjct: 472  SIWSSKFVVKGGHKWSIGTGHNISLWDQNWLFDGTSIKKPDNIDSQLNNLTVADLLHHNA 531

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSI--I 881
             EW   +I     D   ++IL  P+  +V+ D++ W   K G YTVKS Y+  +++I   
Sbjct: 532  KEWVSGLIRGLVNDDIADKILHTPLLESVQNDKITWQHEKNGLYTVKSVYRFCISTIPGR 591

Query: 880  DANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLEN 701
            D + V  G    IWQ Q+PPK+K F+WR+CR+CLPTR  L  +GV     C  CD+  E+
Sbjct: 592  DQHRV-EGNSHLIWQTQMPPKIKKFMWRICRNCLPTRARLHDRGVTCPINCVLCDAGDED 650

Query: 700  NWHIFLSCEFAVACWRSSNM-LHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWN 524
            + H+F SC+ ++ CW+   +   ++ H   T  +  +    ML+ +  S     C ++W+
Sbjct: 651  SNHLFFSCQNSINCWQQMGLWSSIMQHRNLTISVKENVFNIMLQLNEESRVVFAC-VMWS 709

Query: 523  IWKQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAVCAY-WHPPKFAE 347
            IWKQRN  IW N     T   ++A S +  WR AR     + +   +   + W  P    
Sbjct: 710  IWKQRNDVIWRNERVHRTVVCERANSLLTGWRNAREVRDMYNNQQHSPQRFEWTKPDAGT 769

Query: 346  LKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKN 167
             KCN+DA+F + + K G G+ +RD+ G  +L +T W+   + V  GE  GLL  L W+K+
Sbjct: 770  WKCNVDASFSRSRNKVGIGVCIRDNQGQFVLAKTEWYSPILDVDTGEALGLLSALKWVKD 829

Query: 166  LGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIR 65
            L L+ V FE+D+K V D   +       FG +I+
Sbjct: 830  LHLNSVVFELDSKRVVDKFNNNMIDEYVFGDIIK 863


>gb|PNY09839.1| ribonuclease H [Trifolium pratense]
          Length = 1316

 Score =  390 bits (1003), Expect = e-119
 Identities = 192/534 (35%), Positives = 299/534 (55%), Gaps = 3/534 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV QA+P+Y MSV+LLP S  ++++RM+NS+WWG      + I W+ WD++   K 
Sbjct: 748  VMIKSVLQAIPSYVMSVYLLPDSTIKDIERMMNSFWWGGGAHN-KGIRWLAWDRMTYPKT 806

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            +GG+GFR+ H FNLA++AK GWKI +   +L++++YKA+YFP+  F  ++LG NPS+ WR
Sbjct: 807  QGGMGFRDLHSFNLAMIAKQGWKIMTQAHSLLAKLYKARYFPKTSFFEAKLGHNPSYAWR 866

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
             IW +R+++  G RW +G+G +IK+ ++PWLRD +   + S     +    V +L IP  
Sbjct: 867  GIWEARRILMNGCRWSVGNGATIKVMQEPWLRDAAGAWLPSPHDQSVHNFNVKDLMIPNR 926

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
              WD   IE  F      +IL IP+F  +E D+L W  +  G Y+VKSGYK+++N    A
Sbjct: 927  KMWDKEKIESIFPLHITNRILAIPLFDMLEEDKLTWIDNSNGLYSVKSGYKLMMNLTGKA 986

Query: 874  N-LVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
            N  V    W  +W +  P K K+ LWR+ ++CLP+R  L  K V    +C  C+   E++
Sbjct: 987  NGTVQQHDWQSLWSICAPSKAKHLLWRISKECLPSRVRLQEKHVPCPVLCPVCNHDREDD 1046

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
            WH+   CE +    +++ +   V   +       D  +K+ +   +S   +  +++W IW
Sbjct: 1047 WHVLFECETSFQACQTAGLAATVESRLQHSSNARDVILKICKNEDSSTAGRFAMLVWVIW 1106

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAA-RLKYP-AHESGTAAVCAYWHPPKFAEL 344
              RN+ +WN+          +A    + W +A +LK+   H +        W  P    L
Sbjct: 1107 NNRNNIVWNDTSEPGGRLGLKAKHLWEEWLSAQQLKHSRPHATQQQQQIPKWQKPSNGWL 1166

Query: 343  KCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNL 164
            KCNIDA F  D  K   G  +RD  G  ++  T W  G  +++EGE   LL+ L  ++  
Sbjct: 1167 KCNIDAGFHVDMHKTSAGWCLRDDLGRFVMAETTWMEGNCSIVEGESIALLKALQALEQR 1226

Query: 163  GLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
            GLS V FE D+KSV DA+       +EF  +I   N+IL   P +KV+++ R+A
Sbjct: 1227 GLSHVIFETDSKSVVDAISHLSGGSSEFSFIISHINSILLCNPNFKVKFIKRQA 1280


>gb|PNX94516.1| ribonuclease H [Trifolium pratense]
          Length = 1358

 Score =  386 bits (991), Expect = e-117
 Identities = 193/537 (35%), Positives = 298/537 (55%), Gaps = 6/537 (1%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKS+ QA+P+Y MS++LLP +L +EL+RMIN++WWG      R I W+ WD++  SK+
Sbjct: 791  VMIKSILQAIPSYVMSIYLLPDTLIKELERMINAFWWGGSNNS-RGIKWLSWDRMVSSKD 849

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
             GGLGFR+F  FNLA++AK GW   + P TL+SR +KA+YFP+    ++ LG+NPS+ WR
Sbjct: 850  RGGLGFRDFQVFNLAMVAKQGWNFITKPHTLVSRTFKARYFPKCSLFDAVLGNNPSYVWR 909

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            SIW SRQ++  G RW+IGDG  IK+ +DPWLR  +N  +++ Q   +  L V +L +P  
Sbjct: 910  SIWKSRQVLLHGCRWVIGDGSKIKVMQDPWLRSSNNSWVSAPQNYTVHNLKVQQLLLPNQ 969

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSIIDA 875
             +WD   I   F +  V+ IL IP+ +  E D +IW     G Y+V+SGYK ++    + 
Sbjct: 970  KQWDERKIMSLFPEHTVKDILAIPLLATTEEDMIIWKEESNGTYSVRSGYKKMMREKGEW 1029

Query: 874  NLVCPG-VWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
                P   W  IW+++ P K K+ LWR+C+DCLPTR  L    V+    C FC    E+ 
Sbjct: 1030 CSNRPSEPWGMIWKIKAPQKAKHLLWRICKDCLPTRVRLRNHFVNCPLDCPFCSHNDEDE 1089

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
             H+F  CE +   W    +  ++N  +  FD   D    +     N +  ++ ++LW +W
Sbjct: 1090 RHLFFECEGSKEAWIVMGLDSVINQRLQHFDNIRDIIFDVCAHEDNIVAGRMAILLWTLW 1149

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAARL-----KYPAHESGTAAVCAYWHPPKF 353
            K RN+ +W    A+A  +  +A    + W +        +   H+         W PP  
Sbjct: 1150 KNRNNWVWKELRASARQSGFEAQHLWEEWHSVTTLGTLEQQQEHDHSLIT----WQPPPQ 1205

Query: 352  AELKCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWM 173
              LKCN+DA+F  +    G G  +R  NG  I+  +     ++ +MEGE   + E +   
Sbjct: 1206 GMLKCNVDASFHSNIDACGWGWCLRGCNGQYIVAGSNVLYKKLNIMEGEAMAVKEAICET 1265

Query: 172  KNLGLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
               G ++V FE D+K V DA+  +    +EF  +I    ++L S P ++V++V R+A
Sbjct: 1266 IQRGFTQVIFESDSKIVVDAILSRNVGVSEFWCIISCIRSMLLSYPNFEVKFVKRQA 1322


>gb|PNY14982.1| ribonuclease H [Trifolium pratense]
          Length = 1316

 Score =  380 bits (977), Expect = e-115
 Identities = 186/535 (34%), Positives = 291/535 (54%), Gaps = 4/535 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV QA+P+Y MS++++P +   E++RM+NS+WWG      + I W+ W++L  +K 
Sbjct: 748  VMIKSVLQAIPSYVMSIYIIPDTTMNEIERMLNSFWWGGGSNN-KGIRWLSWERLACAKG 806

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            EGGLGFR+F  FN+A++AK GWKI + P+TL+++I+KA+YFP    + + LGSNPS+ W 
Sbjct: 807  EGGLGFRDFKAFNMAMVAKQGWKIMARPETLVAKIFKARYFPHSSLIEANLGSNPSYVWS 866

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
            S+W S  +++LG RW IGDG +IK+ +D WLR      +++ Q  G+  L V +L + G 
Sbjct: 867  SLWKSCNVLRLGCRWNIGDGSNIKVMDDSWLRGKERGRVSAPQPEGVYNLCVKDLMLDGV 926

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVNSI-ID 878
             +W+M  I   F       IL IP+   V+ D+L+W   + G YTVKSGY++L+  I  +
Sbjct: 927  KQWNMVRISNLFTHDAATDILSIPLLREVKEDKLVWQEEQNGEYTVKSGYRLLMQKIKEE 986

Query: 877  ANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLENN 698
                  G W  +WQ++ PPKVK+ LWR+CRDCLPTR  L    V    +C  C    E++
Sbjct: 987  KQRGMTGSWKALWQIRAPPKVKHLLWRICRDCLPTRTRLQHHHVQCPAICELCRGANEDS 1046

Query: 697  WHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNIW 518
             H+   CE +  CW  + +  ++   +N ++   +    +    S  +  ++ + +W IW
Sbjct: 1047 RHVLFDCEESKNCWNVAGLYDVITGRLNQYNDAKEVIFDICSKESKDVAGRVAMTIWLIW 1106

Query: 517  KQRNSKIWNNRCATATDTIKQAISFMDTWRAARLKYPAHESGTAAV--CAYWHPPKFAEL 344
              RN  IWN+    A     QA    + W   +  + +   G   V     W PP+   L
Sbjct: 1107 NNRNQWIWNHEKRNALQLGVQASHMWNEWYEIQ-NFSSSRGGEEQVQQQLQWVPPRQGWL 1165

Query: 343  KCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNL 164
            KCN+DA F  D R    G  +R+  G  I   + W  G  +++E E   LLE +     +
Sbjct: 1166 KCNVDAGFHNDGRITSGGWCLRNERGQFIRAGSYWKNGAHSILEAEALALLEAMKAACTM 1225

Query: 163  GLSKVTFEIDAKSVTDALGDKEERHTE-FGRMIRACNAILSSEPTYKVQYVNRRA 2
                +TFE D++ V  A+ D        F  +I     +L     ++V++V R+A
Sbjct: 1226 NRQHITFESDSQLVVGAIQDANYNGASIFSIIISNIKNLLLLNSNFEVKFVKRQA 1280


>gb|PNX94875.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1291

 Score =  377 bits (968), Expect = e-114
 Identities = 183/534 (34%), Positives = 290/534 (54%), Gaps = 3/534 (0%)
 Frame = -2

Query: 1594 VLIKSVAQALPTYCMSVFLLPVSLGEELQRMINSYWWGSKKEGGRRINWIGWDKLCVSKN 1415
            V+IKSV QA+P Y MS++LLP S+ ++++RM+N++WWG      + I W+ WD++   K 
Sbjct: 748  VMIKSVLQAIPAYVMSIYLLPDSIIKDIERMMNAFWWGGGTNH-KGIRWLAWDRMTHPKA 806

Query: 1414 EGGLGFRNFHYFNLALLAKLGWKIFSNPDTLISRIYKAKYFPRGDFLNSELGSNPSFTWR 1235
            +GG+GFR+ HYFNLA++AK GW I + P+TL++++YKA+YFP      S+LG NPS+ WR
Sbjct: 807  KGGMGFRDLHYFNLAMIAKQGWNIMTRPNTLLAKLYKARYFPNSSLFESKLGHNPSYAWR 866

Query: 1234 SIWSSRQLIKLGTRWIIGDGKSIKIWEDPWLRDVSNFHITSQQVTGMEGLTVHELFIPGT 1055
             IW +RQ++  G RW +G G +IKI  +PWLR      + S Q  G+    V++LF+P  
Sbjct: 867  GIWKARQILMNGCRWSVGTGTNIKIMSEPWLRGEHGAWLPSPQNQGVNNFFVNDLFLPNL 926

Query: 1054 NEWDMNIIEEYFCDRDVEQILKIPVFSNVECDRLIWHFSKTGNYTVKSGYKMLVN--SII 881
              WD   IE  F      +I ++P+F  +E D+LIW  S  GNY+VKSGYK+++N    I
Sbjct: 927  KLWDKEKIESIFPMYIANRIFEVPLFDMIEEDKLIWTDSTNGNYSVKSGYKLIMNITGKI 986

Query: 880  DANLVCPGVWSRIWQLQIPPKVKYFLWRVCRDCLPTRYNLARKGVHVTQVCAFCDSQLEN 701
            DA       W+ +W +  PPK K+ LWR+ + CLPTR  L  + V  +  C  C+   E+
Sbjct: 987  DA-ADAQKDWNSLWSIHAPPKAKHLLWRISKGCLPTRLRLQDRRVTCSTXCPICEQHDED 1045

Query: 700  NWHIFLSCEFAVACWRSSNMLHLVNHWVNTFDLFADWCVKMLEGSSNSIKAKICLILWNI 521
             WH+   C+ ++   ++ +    ++ ++           ++             +++W I
Sbjct: 1046 EWHVLFGCDDSIQARQAVDFGFNLDLYLQQNCTAEALIHEVCTREDKEQAGLFAMLIWVI 1105

Query: 520  WKQRNSKIWNNRCATATDTIKQAISFMDTWRAA-RLKYPAHESGTAAVCAYWHPPKFAEL 344
            W  RN+K+WN    +  +   +A    + W    + ++ + +         W  P F   
Sbjct: 1106 WNNRNNKVWNMANESGRNLGFKARHLWEDWFVVQQSRHGSQQEQQQQHIMRWQKPSFGWY 1165

Query: 343  KCNIDAAFFQDQRKFGCGMVVRDHNGCIILCRTMWFPGEVAVMEGECRGLLEGLTWMKNL 164
            KCN+DA F ++  K   G  +RDH G  ++  T W  G  + +EGE   +L  L  +   
Sbjct: 1166 KCNVDAGFHKELNKTSTGWCLRDHMGRFVMAETTWMEGNFSTLEGESIAVLNALEALGQR 1225

Query: 163  GLSKVTFEIDAKSVTDALGDKEERHTEFGRMIRACNAILSSEPTYKVQYVNRRA 2
            G S V  E D+KSV DA        +EF  +I   N +L   P + V+++ R+A
Sbjct: 1226 GFSHVIIESDSKSVVDATHHLRAGSSEFSLLINHINNVLICNPNFMVKFIKRQA 1279