BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00017542
         (996 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY14675.1| ribonuclease H [Trifolium pratense]                    214   4e-76
dbj|GAU14523.1| hypothetical protein TSUD_250650 [Trifolium subt...   205   2e-75
gb|PNX97001.1| hypothetical protein L195_g020219 [Trifolium prat...   207   4e-75
dbj|GAU24991.1| hypothetical protein TSUD_312260 [Trifolium subt...   208   5e-75
dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subt...   206   8e-75
gb|PNY16372.1| ribonuclease H, partial [Trifolium pratense]           213   1e-74
gb|PNX94875.1| ribonuclease H, partial [Trifolium pratense]           214   4e-74
dbj|GAU36460.1| hypothetical protein TSUD_166260 [Trifolium subt...   197   7e-74
gb|PNX88278.1| hypothetical protein L195_g044381, partial [Trifo...   200   9e-74
gb|PNX94206.1| hypothetical protein L195_g017377 [Trifolium prat...   208   6e-73
gb|PNX96237.1| ribonuclease H [Trifolium pratense]                    207   1e-72
gb|PNY16121.1| hypothetical protein L195_g012831, partial [Trifo...   204   3e-72
gb|PNY17656.1| ribonuclease H, partial [Trifolium pratense]           207   8e-72
gb|PNX96867.1| ribonuclease H, partial [Trifolium pratense]           208   8e-72
gb|PNY09839.1| ribonuclease H [Trifolium pratense]                    210   1e-71
gb|PNX93265.1| ribonuclease H [Trifolium pratense]                    203   3e-71
gb|PNX90114.1| endonuclease/exonuclease/phosphatase family prote...   203   4e-71
dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subte...   194   2e-70
gb|PNX94516.1| ribonuclease H [Trifolium pratense]                    203   2e-70
dbj|GAU43015.1| hypothetical protein TSUD_28340 [Trifolium subte...   191   3e-70

>gb|PNY14675.1| ribonuclease H [Trifolium pratense]
          Length = 1293

 Score =  214 bits (546), Expect(2) = 4e-76
 Identities = 99/199 (49%), Positives = 130/199 (65%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R  RR +W+LLR L++ S +PWC IGDFND+L  EDKKG   HPNWL  GFR  V DC 
Sbjct: 67  ERGRRRKAWDLLRELRDMSDLPWCIIGDFNDLLAQEDKKGNHPHPNWLCNGFRSAVCDCD 126

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+ L+GYP+TW++ +GS N +EER+DRAM  + WL  FPN+ L NL+ S SDHSPILL
Sbjct: 127 LTDIHLEGYPFTWTKSRGSPNVIEERLDRAMANSKWLMNFPNVKLVNLLTSHSDHSPILL 186

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           Q    T+  KS  F+FEN WL+ + +  VVE  W      +I  +   CAEKL  W K +
Sbjct: 187 QNSPMTRNGKSYSFRFENSWLKEEDIGVVVEEGWGRERGTDITIKTARCAEKLKWWGKRK 246

Query: 543 KINFRKDINHCNALLSYLR 599
           ++ F+KD+  C+  L  LR
Sbjct: 247 RMRFKKDVLECSEELERLR 265



 Score =  100 bits (248), Expect(2) = 4e-76
 Identities = 47/109 (43%), Positives = 66/109 (60%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK+HWLKEGD NT+FFH  A++RQR   + K+ +D+ I    Q E+CE+  
Sbjct: 289 QEEAYWRQRAKMHWLKEGDLNTKFFHMSATSRQRAKKIGKLMNDDNIAVTSQPELCEVAL 348

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y+   F  +    +PV+  +   IT E NE L +  S  E   A+ QM
Sbjct: 349 NYFNHLFKSNSTSHDPVLSLIAPKITQEDNESLVRPISKEELKDALFQM 397


>dbj|GAU14523.1| hypothetical protein TSUD_250650 [Trifolium subterraneum]
          Length = 1572

 Score =  205 bits (522), Expect(2) = 2e-75
 Identities = 93/210 (44%), Positives = 133/210 (63%), Gaps = 1/210 (0%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            +R  R+ +W+LLR L++ S +PWC +GDFND+L  EDKKG   HPNWL  GFR  V DC 
Sbjct: 403  ERGRRKQAWDLLRQLRDMSDLPWCIVGDFNDLLSQEDKKGTNPHPNWLCNGFRSAVSDCD 462

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L D+ L+GYPYTW +  G+ N +EER+DRAM  + WL  +P++ L NL+AS SDHSPILL
Sbjct: 463  LTDIHLEGYPYTWIKSAGTTNVIEERLDRAMANSKWLMNYPSVKLLNLLASHSDHSPILL 522

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
            Q     +  K+  F+FEN WL+   + EVVE  W    +  +  +   CAEKL  W + +
Sbjct: 523  QNSPMIRNGKTYAFRFENTWLKEYDIEEVVEDGWGRGSNIEVTNKTTRCAEKLKEWGRRK 582

Query: 543  KINFRKDINHCNALLSYLRDKMGK-RTQYY 629
            ++ F++++  C+  +  LR    + R+Q Y
Sbjct: 583  RMRFKQEVMECSEEMDRLRGSHERARSQRY 612



 Score =  107 bits (267), Expect(2) = 2e-75
 Identities = 50/109 (45%), Positives = 71/109 (65%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK+HWLKEGD NT+ FH  AS RQR   + K+ +++ I  + Q E+C++ K
Sbjct: 625 QEETYWRQRAKMHWLKEGDLNTKIFHMSASTRQRAKKIDKLVNEDNIEVKTQPEICQVAK 684

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y+EK FS S  V EP++  +   +T E NE+LT   +  E   A+ QM
Sbjct: 685 NYFEKLFSASVTVHEPILSLIAPKVTVEDNEMLTATITKEELKAALFQM 733


>gb|PNX97001.1| hypothetical protein L195_g020219 [Trifolium pratense]
          Length = 1036

 Score =  207 bits (527), Expect(2) = 4e-75
 Identities = 94/208 (45%), Positives = 129/208 (62%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            D   RRDSW+LLR+L   + +PWC +GDFND+L  E+K+ RV+HP W  RGFRE + DC 
Sbjct: 489  DGERRRDSWDLLRTLAQDNSLPWCIMGDFNDILSNEEKRSRVDHPPWRIRGFREAIQDCN 548

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L D+PLQGYP+TW R +G  + VEE++DRAM T  W+  FPN  L+NL+A  SDHSPILL
Sbjct: 549  LIDIPLQGYPFTWIRRRGKPDMVEEKLDRAMATQRWIDLFPNSKLSNLIADRSDHSPILL 608

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
                   +   + F+FEN WL+ + L  VV  +W    +  + ++L  C E L  W K  
Sbjct: 609  SLIDRDNRNVKRSFRFENAWLEENELQNVVTSSWRRDEELEVLEKLNQCREDLERWGKQM 668

Query: 543  KINFRKDINHCNALLSYLRDKMGKRTQY 626
            ++ F+KDI+ C   L  LR+      +Y
Sbjct: 669  RLRFKKDIDQCRVELEALREDEAFHEEY 696



 Score =  104 bits (259), Expect(2) = 4e-75
 Identities = 44/110 (40%), Positives = 73/110 (66%)
 Frame = +2

Query: 665  SQEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIV 844
            SQE+ +W+QRAK+HWL+ GD+NT+FFH  AS R++RN + K+Q ++G   E Q+++C + 
Sbjct: 708  SQEDAFWRQRAKVHWLQNGDSNTKFFHAMASTRKKRNMIMKLQSESGEMMEKQEDLCNVA 767

Query: 845  KDYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            K+Y++  FS +    E +++ V   I ++ N++L   F   EF  A+ QM
Sbjct: 768  KNYFDTLFSNNTSTSESILNYVPRTINEQDNDMLMAPFVKEEFKIALFQM 817


>dbj|GAU24991.1| hypothetical protein TSUD_312260 [Trifolium subterraneum]
          Length = 1036

 Score =  208 bits (530), Expect(2) = 5e-75
 Identities = 91/204 (44%), Positives = 136/204 (66%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R+ R  +W+LLR L N S +PWC IGDFND+L  EDK+G + HPNWL  GFR+ + DC 
Sbjct: 41  ERSRRSSAWDLLRELGNISSLPWCIIGDFNDLLAQEDKRGNLPHPNWLCSGFRQAISDCD 100

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+PL+GYP+TW + +G+ + +EER+DRAM + +WL  FPN+ L+NL+AS SDHSPILL
Sbjct: 101 LSDIPLEGYPFTWIKSRGTPHVIEERLDRAMASTSWLNLFPNVRLSNLLASHSDHSPILL 160

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
               +++ + +  F+FEN WL+   L EVV   W    +  +  R+  CA  L +W + +
Sbjct: 161 PCTPSSRSRFNGSFRFENSWLREPDLEEVVLEGWGAHENIEVVDRVARCANILQSWGRKK 220

Query: 543 KINFRKDINHCNALLSYLRDKMGK 614
           K+ F+++I+ C  ++  LR   G+
Sbjct: 221 KVKFKEEIDECVRVMEVLRGNQGE 244



 Score =  102 bits (255), Expect(2) = 5e-75
 Identities = 50/135 (37%), Positives = 77/135 (57%)
 Frame = +2

Query: 590 ILKR*DGEEDAIXXXXXXXXXXXXXSQEECYWKQRAKIHWLKEGDNNTRFFHKFASARQR 769
           +L+   GEE+                QEE YWKQRAK+HWLKEG  NT FFHK A+AR++
Sbjct: 237 VLRGNQGEEEGRRYQEIHDRHAVLLVQEEDYWKQRAKMHWLKEGGMNTSFFHKSATARRK 296

Query: 770 RNHLTKIQDDNGIWHEDQDEVCEIVKDYYEKFFSESDCVVEPVIDAVNSCITDEHNEILT 949
           + +++K+ D+ G+    Q+E+CE+ K Y++  F   +   EPV+  +   +T+E N  L 
Sbjct: 297 KKNISKLVDEGGMEVHTQEELCEVAKQYFDTLFKPKNGEQEPVLTLIQRRVTEEDNMYLA 356

Query: 950 KNFSLSEFTKAVKQM 994
              +  E  +A+ QM
Sbjct: 357 APITKVEIQQALFQM 371


>dbj|GAU37771.1| hypothetical protein TSUD_102880 [Trifolium subterraneum]
          Length = 1688

 Score =  206 bits (525), Expect(2) = 8e-75
 Identities = 93/208 (44%), Positives = 130/208 (62%)
 Frame = +3

Query: 15   RRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCGLQDL 194
            RRDSW+LLR+L   + +PWC +GDFND+L  E+K+ +V+HP W  RGFRE + DC L D+
Sbjct: 493  RRDSWDLLRTLAQDNSLPWCIMGDFNDILSNEEKRSKVDHPPWRIRGFREAIQDCNLIDI 552

Query: 195  PLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILLQTCV 374
            PLQGYP+TW R +G  + VEE++DRAM T  W+  FPN  L+NL+A  SDHSPILL    
Sbjct: 553  PLQGYPFTWIRRRGKPDMVEEKLDRAMATERWIDLFPNSKLSNLIADRSDHSPILLSLID 612

Query: 375  NTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQKINF 554
               +   + F+FEN WL+ + L +VV   W    +  + ++L  C E L  W K  ++ F
Sbjct: 613  RDNRNVKRSFRFENAWLKENELQDVVTSCWRRDEELEVLEKLNQCREDLERWGKQMRLRF 672

Query: 555  RKDINHCNALLSYLRDKMGKRTQYYLKR 638
            +KDI+ C   L  LR+      +Y + R
Sbjct: 673  KKDIDQCRVELEALREAEAFHEEYTITR 700



 Score =  103 bits (258), Expect(2) = 8e-75
 Identities = 46/110 (41%), Positives = 70/110 (63%)
 Frame = +2

Query: 665  SQEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIV 844
            SQE+ +W+QRAK+HWL+ GD+NT+FFH  AS R++RN + K+Q +NG   E Q+++C + 
Sbjct: 708  SQEDAFWRQRAKVHWLQGGDSNTKFFHAMASTRKKRNMIMKLQSENGEVMEKQEDLCNVA 767

Query: 845  KDYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            K Y++  FS      E +++ V   I +E N +L   F   EF  A+ QM
Sbjct: 768  KTYFDTLFSNDTGTSESILNYVPEAINEEDNNMLMAPFVKEEFRIALFQM 817


>gb|PNY16372.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1540

 Score =  213 bits (542), Expect(2) = 1e-74
 Identities = 92/199 (46%), Positives = 136/199 (68%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            +R+ RR +W+LLR L++ S +PWC +GDFND+L  EDKKG + HPNWL  GFR  V DC 
Sbjct: 407  ERSRRRQAWDLLRELRDMSDLPWCIVGDFNDLLSQEDKKGTLPHPNWLCNGFRSAVSDCD 466

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L D+ LQGYP+TW + +G+ + +EER+DRAMV + WL  +P+++L NL+ S SDHSPIL+
Sbjct: 467  LIDIQLQGYPFTWVKSRGTPHVIEERLDRAMVNSDWLALYPDVNLLNLLTSHSDHSPILI 526

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
            Q+   T+  K+  F+FEN WL+ D + EVV+  W +     I  R+  CA+KL  W + +
Sbjct: 527  QSSPMTRNGKNYSFRFENHWLKEDDVEEVVKEGWRVGGGGEITSRISLCADKLKGWGRRK 586

Query: 543  KINFRKDINHCNALLSYLR 599
            ++ F+++I  C+  +  LR
Sbjct: 587  RMRFKQEIIECSEEMERLR 605



 Score = 96.7 bits (239), Expect(2) = 1e-74
 Identities = 46/109 (42%), Positives = 65/109 (59%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK+HWL+EGD NT+FFH  AS R R   + K+ +   I      E+CE+  
Sbjct: 629 QEEAYWRQRAKMHWLREGDLNTKFFHMSASIRVRSKRIEKLVNGANIEVRTHPEICEVAL 688

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y+++ F  +    +PV+  V   IT E NE LT  F+  E  +A+ QM
Sbjct: 689 NYFDQLFKANPSFQDPVLSLVTPRITQEDNERLTAPFTREELKEALFQM 737


>gb|PNX94875.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1291

 Score =  214 bits (544), Expect(2) = 4e-74
 Identities = 96/211 (45%), Positives = 135/211 (63%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R  RR +WNLLR L++ S +PWC +GDFND+L  EDKKG   HPNWL  GFR+ V DC 
Sbjct: 67  ERDRRRQAWNLLRELRDMSDLPWCIVGDFNDLLAQEDKKGNHPHPNWLCNGFRDAVCDCD 126

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+ L+GYP+TW++ +GS N +EER+DRAM  + WL  +PN+ L NL+ S SDHSPILL
Sbjct: 127 LTDIYLEGYPFTWTKSRGSPNVIEERLDRAMANSKWLMIYPNVKLVNLLTSHSDHSPILL 186

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           Q        K+  F+FEN WL+ D + EVVE  W    D ++  +   CAEKL  W + +
Sbjct: 187 QNSPMENTVKTYSFRFENSWLKEDDIGEVVEDGWGGVEDVDVTLKTARCAEKLKGWGRRK 246

Query: 543 KINFRKDINHCNALLSYLRDKMGKRTQYYLK 635
           ++ F++++  C+  +  +RD     T +  K
Sbjct: 247 RMRFKQEVLECSEEMERMRDCHDPSTSWRYK 277



 Score = 94.4 bits (233), Expect(2) = 4e-74
 Identities = 43/109 (39%), Positives = 66/109 (60%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK HWLKEGD NT+FFH  A++R+R   + K+ +D+ I    Q  +CE+  
Sbjct: 289 QEEAYWRQRAKTHWLKEGDLNTKFFHMTATSRRRAKKIGKLLNDDNIAVTTQSGLCEVAV 348

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            Y+ + F  +  V +P++  V   I+ E N+ L +  +  E  +A+ QM
Sbjct: 349 SYFNQLFQSNPTVHDPILSLVTPKISPEDNDALVRPITKEELKEALFQM 397


>dbj|GAU36460.1| hypothetical protein TSUD_166260 [Trifolium subterraneum]
          Length = 1012

 Score =  197 bits (501), Expect(2) = 7e-74
 Identities = 92/200 (46%), Positives = 125/200 (62%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +   RRDSW+LLR+L   + +PWC +GDFND+L  E+K+ +V HP W  RGFRE V D  
Sbjct: 21  ENERRRDSWDLLRTLSQDNTLPWCIMGDFNDILSNEEKRSKVNHPPWRIRGFREAVQDSN 80

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L DLPL GYP+TW +G+G  +  EER+DRAM T +W   FPN  L NLVAS SDH PILL
Sbjct: 81  LVDLPLIGYPFTWIKGRGGDDMKEERLDRAMATQSWFDIFPNCQLHNLVASRSDHYPILL 140

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           +    +++K  ++FKFEN WL  + L  +V+G W    DR +  +L  C  +L  W +  
Sbjct: 141 KIQEGSRRKIMREFKFENSWLYEEELEGIVQGGWEKDRDRGVTTKLKNCTNELNEWGRRL 200

Query: 543 KINFRKDINHCNALLSYLRD 602
           +  +R +I  C   L  LR+
Sbjct: 201 RNKYRVEIEECRNELDSLRN 220



 Score =  110 bits (274), Expect(2) = 7e-74
 Identities = 50/110 (45%), Positives = 76/110 (69%)
 Frame = +2

Query: 665 SQEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIV 844
           +QEE +WKQRAKI+WL++GD N+RFFH  ASAR++RN +T+++ D+G   + Q EVCE+ 
Sbjct: 242 AQEEAFWKQRAKIYWLRDGDTNSRFFHATASARKKRNEITQMKKDDGEVIQHQHEVCEVA 301

Query: 845 KDYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           K+Y+E+ FS        ++D +   IT+E+N  LT  F + EF +A+  M
Sbjct: 302 KNYFEQLFSPGQQGHNTMLDYIMPSITEENNNQLTSPFQIKEFKEALFAM 351


>gb|PNX88278.1| hypothetical protein L195_g044381, partial [Trifolium pratense]
          Length = 484

 Score =  200 bits (509), Expect(2) = 9e-74
 Identities = 94/198 (47%), Positives = 126/198 (63%)
 Frame = +3

Query: 6   RAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCGL 185
           R  RR+SWN+LR L  QS +PWC IGDFND+L  +DK+G V HP WLF GFR+ V DCGL
Sbjct: 112 RGQRRESWNILRMLSQQSNLPWCIIGDFNDILSNDDKRGDVPHPTWLFNGFRQAVSDCGL 171

Query: 186 QDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILLQ 365
            D+PLQG+ YTWSR  G+   VEER+DRA+VT  W+  FP+  L NL++  SDHSP+LL 
Sbjct: 172 IDVPLQGHSYTWSRRMGTNYVVEERLDRALVTQPWMSLFPHCILKNLISGASDHSPLLLC 231

Query: 366 TCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQK 545
           T   T   K ++F+FEN WL    L  +V+  W       +  RL  C E+L NW +  +
Sbjct: 232 TEPQTFVYKKRQFRFENTWLVEPELPSIVDDGWKRNLADPLLDRLAACTEELDNWGRALR 291

Query: 546 INFRKDINHCNALLSYLR 599
             +++ IN+C   +  L+
Sbjct: 292 KRYKEGINNCKKKIEELQ 309



 Score =  106 bits (265), Expect(2) = 9e-74
 Identities = 47/109 (43%), Positives = 74/109 (67%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE +WKQRAK  W+++GD NT+FFH  A++R++RN +TK+++D+ I    Q+ +C +  
Sbjct: 333 QEEIFWKQRAKTFWMRDGDMNTKFFHAAATSRKQRNKITKLRNDDNIEVNTQEGLCTLGV 392

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           DY+   F  + C V+PV+  V+S +T+E N++L   F+  EF  AV QM
Sbjct: 393 DYFSALFKATTCDVDPVLQVVHSRLTEEDNQLLIAPFNADEFKDAVFQM 441


>gb|PNX94206.1| hypothetical protein L195_g017377 [Trifolium pratense]
          Length = 440

 Score =  208 bits (529), Expect(2) = 6e-73
 Identities = 93/199 (46%), Positives = 132/199 (66%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R  RR +W LLR L++ S +PWC +GDFND+L  EDKKG   HPNWL  GFR  V DC 
Sbjct: 110 ERGRRRQAWELLRELRDMSDLPWCIVGDFNDLLTQEDKKGTHPHPNWLCNGFRSAVSDCD 169

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+ L+GYPYTW + +G  + +EER+DRAM  + WL  +P++ L NL+AS SDHSPILL
Sbjct: 170 LIDINLEGYPYTWIKSRGPPHVIEERLDRAMANSKWLMIYPDVKLLNLLASHSDHSPILL 229

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           Q+   T+ +K+  F+FEN WL  + + EVVE  W      +I ++ G CAEKL  W + +
Sbjct: 230 QSSPLTRNQKTYSFRFENIWLHEEDIDEVVEEGWGRDSSDDIIRKTGRCAEKLKGWGRRK 289

Query: 543 KINFRKDINHCNALLSYLR 599
           ++ F++++  C+  +  LR
Sbjct: 290 RMRFKQEVMECSEEMERLR 308



 Score = 96.3 bits (238), Expect(2) = 6e-73
 Identities = 43/106 (40%), Positives = 62/106 (58%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK+HWLKEGD NT+FFH  AS RQR+  + K+  +  I    Q E+CE+  
Sbjct: 332 QEETYWRQRAKMHWLKEGDLNTKFFHMSASTRQRKKKIDKLVTEESIQVRTQPEICEVAM 391

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAV 985
           +Y+   F     V +P++  +   +T E NE L    +  E  +A+
Sbjct: 392 NYFNHLFKADTTVHDPILSLIGPKVTQEDNERLLAPITKEELKEAL 437


>gb|PNX96237.1| ribonuclease H [Trifolium pratense]
          Length = 1283

 Score =  207 bits (527), Expect(2) = 1e-72
 Identities = 92/199 (46%), Positives = 128/199 (64%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            +R  RR +W+LLR L++ S +PWC IGDFND+L  EDKKG+  HPNWL  GFR  V DC 
Sbjct: 423  ERGRRRQAWDLLRELRDMSDLPWCVIGDFNDLLAQEDKKGQHPHPNWLCNGFRSAVCDCD 482

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L D+ L+GYPYTW + +G  N +EER+DRAM  + WL  +P + L NL+ S SDHSPILL
Sbjct: 483  LTDIHLEGYPYTWIKSRGLPNVIEERLDRAMANSQWLMTYPTVKLVNLLTSHSDHSPILL 542

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
            Q        K+  F+FEN WL+ + + EVVE  W      ++  +   CAEKL  W + +
Sbjct: 543  QNSPMLLNGKTYSFRFENSWLKEEDIAEVVEEGWSRERGSDVINKTVRCAEKLKVWGRRK 602

Query: 543  KINFRKDINHCNALLSYLR 599
            ++ F++++N C+  +  LR
Sbjct: 603  RMRFKQEVNECSKEMERLR 621



 Score = 96.3 bits (238), Expect(2) = 1e-72
 Identities = 46/109 (42%), Positives = 65/109 (59%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YWKQRAK+HWL EGD NT+FFH  AS+RQR   + K+ ++  I    Q E+CE+  
Sbjct: 645 QEEAYWKQRAKMHWLSEGDLNTKFFHMSASSRQRAKKIGKLVNEENIAVTTQPELCEVAL 704

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y+ + F  +  + +PV+  +   IT E NE L    +  E   A+ QM
Sbjct: 705 NYFNQLFKSNSSMHDPVLSLIAPVITPEDNERLVMPITRVELKDALFQM 753


>gb|PNY16121.1| hypothetical protein L195_g012831, partial [Trifolium pratense]
          Length = 833

 Score =  204 bits (518), Expect(2) = 3e-72
 Identities = 93/199 (46%), Positives = 128/199 (64%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            +R  RR +W+LLR L++ S MPWC +GDFND+L  EDK+G   HPNWL  GFR  V DC 
Sbjct: 476  ERGRRRHAWDLLRELRDMSDMPWCIVGDFNDLLAQEDKRGIHPHPNWLCNGFRSAVSDCD 535

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L D+ L+GYP+TW++ +GS N +EER+DRAM    WL  FPN+ L NL+ S SDHSPILL
Sbjct: 536  LTDIHLEGYPFTWTKSRGSPNVIEERLDRAMANLQWLMIFPNVKLMNLLTSHSDHSPILL 595

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
            QT       K+  F+FEN WL+ + + EVV   W      ++  +   CAEKL  W + +
Sbjct: 596  QTSPTMSSGKNYSFRFENSWLKEEDIGEVVTEGWGKGRGGDVIIKTVRCAEKLKGWGRRK 655

Query: 543  KINFRKDINHCNALLSYLR 599
            ++ F++++  C+  L  LR
Sbjct: 656  RMRFKQEVAECSDELERLR 674



 Score = 98.2 bits (243), Expect(2) = 3e-72
 Identities = 44/109 (40%), Positives = 68/109 (62%)
 Frame = +2

Query: 668  QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
            QEE YW+QRAK+HWLKEGD NT+FFH  A++RQR   + K+ +D+ +    Q E+CE+  
Sbjct: 698  QEEAYWRQRAKMHWLKEGDLNTKFFHMTATSRQRAKKIGKLVNDDNVAVTSQPELCEVAL 757

Query: 848  DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            +Y+ + F  +    +P++  +   IT E NE L +  +  E  +A+ QM
Sbjct: 758  NYFNQLFKPNSASHDPILSLIAPKITHEDNERLVRPITKEELKEALFQM 806


>gb|PNY17656.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1291

 Score =  207 bits (526), Expect(2) = 8e-72
 Identities = 95/199 (47%), Positives = 125/199 (62%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            +R  RR +W LL+ L++ S +PWC IGDFND+L  +DKKG   HPNWL  GFR  V DC 
Sbjct: 413  ERGRRRQAWELLKELRDMSDLPWCIIGDFNDLLSQDDKKGTHPHPNWLCNGFRNAVSDCD 472

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L D+ L+GYPYTW + +GS N +EER+DRAMV   WL  FP   L NL+AS SDHSPILL
Sbjct: 473  LTDIQLEGYPYTWIKSRGSPNVIEERLDRAMVNPEWLMIFPKAKLLNLLASHSDHSPILL 532

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
            Q     +  K+  F+FEN WL+ D + EVV   W      +I  R   CA+KL  W + +
Sbjct: 533  QNTPMVRHGKTYSFRFENIWLKEDDVEEVVVAGWGRERGIDITSRTSRCADKLQGWGRRK 592

Query: 543  KINFRKDINHCNALLSYLR 599
            ++ F++D+  C   +  LR
Sbjct: 593  RMRFKQDVKECGEEMERLR 611



 Score = 93.6 bits (231), Expect(2) = 8e-72
 Identities = 43/109 (39%), Positives = 66/109 (60%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YWKQRAK+HWLKEGD NT+FFH  ASARQR   + ++ ++  +  + Q E+C +V+
Sbjct: 635 QEEAYWKQRAKMHWLKEGDLNTKFFHMSASARQRTKRIDRLVNEANVEVKTQAELCGVVQ 694

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            Y+++ F       +P++  ++  IT E N+ L    +  E   A+  M
Sbjct: 695 SYFDQLFRARATYHDPILSLISPKITQEDNDRLVAPITREELKDALFHM 743


>gb|PNX96867.1| ribonuclease H, partial [Trifolium pratense]
          Length = 997

 Score =  208 bits (530), Expect(2) = 8e-72
 Identities = 93/201 (46%), Positives = 131/201 (65%), Gaps = 2/201 (0%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R  RR +W+LLR L++ S  PWC IGDFND+L  EDK+G   HPNWL  GFR  V DC 
Sbjct: 110 ERGRRRQAWDLLRELRDMSESPWCIIGDFNDLLSQEDKRGNHPHPNWLCNGFRNAVSDCD 169

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+ L+GYPYTW + +G+ + +EER+DRAM  + WL K+PN+ L NL+ S SDHSP+LL
Sbjct: 170 LTDIHLEGYPYTWVKSRGTTSVIEERLDRAMANSAWLMKYPNVRLLNLLTSHSDHSPLLL 229

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIE--KRLGFCAEKLMNWSK 536
           Q        ++  F+FEN WL+ + + EVVE  W    DR +E   R+  CA+KL  W +
Sbjct: 230 QNSPMVTNVRTYSFRFENTWLKEEDVEEVVEDGW--GRDRGVEITSRISRCADKLTGWGR 287

Query: 537 NQKINFRKDINHCNALLSYLR 599
            +++ F+++I  C+  +  LR
Sbjct: 288 RKRMRFKQEIKECSDEMERLR 308



 Score = 92.0 bits (227), Expect(2) = 8e-72
 Identities = 45/109 (41%), Positives = 67/109 (61%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK+HWLKEGD NT+FFH  ASARQRR  + KI ++  +  + Q E+ ++  
Sbjct: 332 QEETYWRQRAKMHWLKEGDLNTKFFHMSASARQRRKKIEKIVNEANVEVKTQAEISKVAL 391

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y++  F  +    EPV+  +   +T E N+ L    +  E  +A+ QM
Sbjct: 392 NYFDHLFKTNATNHEPVLSLMVPKVTQEDNDRLLAPITREELHEALFQM 440


>gb|PNY09839.1| ribonuclease H [Trifolium pratense]
          Length = 1316

 Score =  210 bits (534), Expect(2) = 1e-71
 Identities = 96/199 (48%), Positives = 127/199 (63%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R  RR +W+LLR +++ S +PWC IGDFND+L  +DKKG   HPNWL  GFR  V DC 
Sbjct: 67  ERGRRRQAWDLLRQMRDMSDLPWCIIGDFNDLLAQDDKKGMHPHPNWLCNGFRHAVCDCD 126

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+ L+GYPYTW + +GS N +EER+DRAM  + WL  FPN+ L NL+ S SDHSPILL
Sbjct: 127 LTDIHLEGYPYTWVKSRGSPNVIEERLDRAMANSKWLLVFPNVKLVNLLTSHSDHSPILL 186

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           Q        ++  F+FEN WLQ D + EVVE  W      +I  +   CAEKL  W + +
Sbjct: 187 QNSPMICNGRTHTFRFENSWLQEDDIGEVVEEGWGKERGVDIISKTSRCAEKLKGWGRRK 246

Query: 543 KINFRKDINHCNALLSYLR 599
           ++ F++DI  C   +  LR
Sbjct: 247 RMRFKQDIKECGEEMERLR 265



 Score = 89.7 bits (221), Expect(2) = 1e-71
 Identities = 43/109 (39%), Positives = 65/109 (59%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YW+QRAK+HWLKEGD NT+FFH  AS+RQR   + K+ +++      Q E+ E+  
Sbjct: 289 QEEAYWRQRAKMHWLKEGDLNTKFFHMSASSRQRAKKIDKLLNNDNTAVTTQPELREVAL 348

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           DY+ + F  +    +PV+  +   IT E N+ L    +  E  +A+ +M
Sbjct: 349 DYFNQLFKPNPTNHDPVLSLITPKITQEDNDKLVLPITKEELKEALFEM 397


>gb|PNX93265.1| ribonuclease H [Trifolium pratense]
          Length = 1385

 Score =  203 bits (516), Expect(2) = 3e-71
 Identities = 89/199 (44%), Positives = 131/199 (65%)
 Frame = +3

Query: 3    DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
            +R  RR +W+LLR L++ S +PWC +GDFND+L  +DK+G   HPNWL  GFR  V DC 
Sbjct: 584  ERGRRRQAWDLLRELRDMSELPWCIVGDFNDLLAQDDKRGIHPHPNWLCNGFRNAVCDCD 643

Query: 183  LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
            L+D+ L+GYPYTW + +G+ N +EER+DRAM T+ WL  +P++ L NL+ S SDHSPILL
Sbjct: 644  LKDIYLEGYPYTWIKSRGTPNVIEERLDRAMATSNWLMLYPSVKLVNLLTSHSDHSPILL 703

Query: 363  QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
            QT    +  K+  F+FEN WL+ + + EVVE  W      +I  +   CA+ L  W + +
Sbjct: 704  QTSSMERNGKNHVFRFENSWLEEEDIDEVVEDGWGRGRSDDIISKTVRCAKTLTRWGRRK 763

Query: 543  KINFRKDINHCNALLSYLR 599
            ++ F++++  C+  +  LR
Sbjct: 764  RMRFKQEVLECSDEMERLR 782



 Score = 95.5 bits (236), Expect(2) = 3e-71
 Identities = 43/109 (39%), Positives = 63/109 (57%)
 Frame = +2

Query: 668  QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
            QEE YW+QRAK+HWLK GD NT+FFH  AS RQR   + K+ ++  +    Q E+CE+  
Sbjct: 806  QEEAYWRQRAKMHWLKNGDLNTKFFHMSASCRQRAKKIGKLVNEENVTVTTQPELCEVAL 865

Query: 848  DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            +Y+   F  +    +P++  +   IT E NE L    +  E  +A+ QM
Sbjct: 866  NYFNHLFKSNPSTHDPILSLITPIITQEDNERLVMPITREELKEALFQM 914


>gb|PNX90114.1| endonuclease/exonuclease/phosphatase family protein, partial
           [Trifolium pratense]
          Length = 444

 Score =  203 bits (516), Expect(2) = 4e-71
 Identities = 100/200 (50%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
 Frame = +3

Query: 9   AHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCGLQ 188
           + RRDSWN LR L   S +PWC IGDFND+L   +KKGR E PNWL  GFR+ VLD GL 
Sbjct: 112 SRRRDSWNFLRRLSQSSQLPWCIIGDFNDILDAIEKKGRSERPNWLINGFRQAVLDSGLS 171

Query: 189 DLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL-Q 365
           D+ + GYP+TW +  G+  AVEER+DRA+    W Q FPN  L NLVA  SDH PILL +
Sbjct: 172 DVHMDGYPFTWFKSLGTPRAVEERLDRALANEAWFQLFPNAKLENLVAPASDHYPILLDR 231

Query: 366 TCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQK 545
             +    +  +KFKFEN W     L +VV  +WL   +R I  RL  CAE L  WSKN  
Sbjct: 232 DPIIRSCRARRKFKFENAWCIETELDDVVHRSWLSTLERPIMPRLEVCAEDLSQWSKNHC 291

Query: 546 INFRKDINHCNALLSYLRDK 605
            N +K+I  C   L + RD+
Sbjct: 292 HNLKKEIEDCRKKLQHARDQ 311



 Score = 95.1 bits (235), Expect(2) = 4e-71
 Identities = 41/109 (37%), Positives = 69/109 (63%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           Q++ +W+QRAK HW ++GD NTRFFH  A++R++ N ++ ++DD+G+   D   +C + K
Sbjct: 333 QDDLFWRQRAKNHWYRDGDLNTRFFHASATSRRKVNRISYLKDDSGLRTTDISGMCNLAK 392

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y+++ F +      PVI  +   I D+ NE LT  F + EF +A+  M
Sbjct: 393 NYFDELFQKQASTRGPVISTIMPTIFDDDNEKLTSPFKIEEFKEALFSM 441


>dbj|GAU31768.1| hypothetical protein TSUD_22140 [Trifolium subterraneum]
          Length = 1601

 Score =  194 bits (493), Expect(2) = 2e-70
 Identities = 91/200 (45%), Positives = 120/200 (60%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           D   R DSWNLLR+L   + +PWC +GDFND+L  EDK+ RVEHP W  RGFR  V +  
Sbjct: 383 DTGRRTDSWNLLRTLAQDNSLPWCIMGDFNDLLSNEDKRSRVEHPPWRIRGFRNAVQESN 442

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D PL GYP+TW RG+G  +  EER+DRAMVT  W   FPN  L N++A  SDH PILL
Sbjct: 443 LVDFPLIGYPFTWIRGRGGDDVKEERLDRAMVTQEWFDTFPNCQLHNVIADRSDHYPILL 502

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           +   + ++   + FKFEN WLQ + +  VV   W    D ++  RL  C  +L  W +  
Sbjct: 503 KLHESNRRITKRDFKFENSWLQEEDIEGVVTAGWERDGDGDLVARLQNCTNELNEWGRQL 562

Query: 543 KINFRKDINHCNALLSYLRD 602
           +  +R +I  C   L +LR+
Sbjct: 563 RNKYRVEIEDCRRELEFLRE 582



 Score =  101 bits (252), Expect(2) = 2e-70
 Identities = 45/110 (40%), Positives = 73/110 (66%)
 Frame = +2

Query: 665 SQEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIV 844
           +QEE +WKQRAK++WL++GD N+RFFH  ASA+++RN +TK+ ++ G     Q ++C++ 
Sbjct: 604 TQEEAFWKQRAKVYWLRDGDTNSRFFHATASAKRKRNEITKLINNEGEVVHTQHDICDVA 663

Query: 845 KDYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            +Y+ + FS +D  +   +D +N  IT E N  LT  F + EF +A+  M
Sbjct: 664 MNYFNQLFSLNDNNINMSLDYINPSITAEQNMQLTAPFQVREFKEALFAM 713


>gb|PNX94516.1| ribonuclease H [Trifolium pratense]
          Length = 1358

 Score =  203 bits (516), Expect(2) = 2e-70
 Identities = 92/199 (46%), Positives = 128/199 (64%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R+ RR +W +L+ L++ S +PWC IGDFND+L  EDK+G   HPNWL  GFR  V DC 
Sbjct: 110 ERSRRRLAWEMLKDLRDMSHLPWCIIGDFNDLLSQEDKRGVHPHPNWLCSGFRNAVNDCN 169

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+ L+GYPYTW + +G+ +++EER+DRA+  + WL  FPN  L NL++S SDH+PILL
Sbjct: 170 LTDIHLEGYPYTWVKSRGTDHSIEERLDRALANSLWLSLFPNAKLINLLSSHSDHNPILL 229

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           Q+           FKFEN WLQ + L EVVE  W    D  + ++L  CAE L  W K +
Sbjct: 230 QSRQRVPSIFKYSFKFENCWLQEEDLAEVVEAGWREERDAEVVEKLACCAESLQKWGKRK 289

Query: 543 KINFRKDINHCNALLSYLR 599
           K+ F++++    A +  LR
Sbjct: 290 KVKFQEEVAEYEAEMGRLR 308



 Score = 92.8 bits (229), Expect(2) = 2e-70
 Identities = 43/109 (39%), Positives = 64/109 (58%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE +WKQRAK+HWLKEGD NT+FFH  A+AR +   + K+  D  +      ++CE+ +
Sbjct: 332 QEESFWKQRAKMHWLKEGDLNTKFFHASATARTKIKKIDKLTSDENVIVTSHQDLCEVAR 391

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
           +Y+++ F       EPV+  ++  I+ E NE L    S  E   A+ QM
Sbjct: 392 NYFDQLFKSKLSDQEPVLSLISPRISTEDNERLVAPISKEELRSALFQM 440


>dbj|GAU43015.1| hypothetical protein TSUD_28340 [Trifolium subterraneum]
          Length = 1027

 Score =  191 bits (484), Expect(2) = 3e-70
 Identities = 89/199 (44%), Positives = 129/199 (64%)
 Frame = +3

Query: 3   DRAHRRDSWNLLRSLKNQSLMPWCCIGDFNDMLHPEDKKGRVEHPNWLFRGFREVVLDCG 182
           +R+ RR +W+LLR L+N S +PWC IGDFND+L   DKKG   H N L  GFR+ V DC 
Sbjct: 61  ERSRRRAAWDLLRELRNMSSIPWCIIGDFNDLLSHADKKGIHPHLNGLCMGFRQAVNDCD 120

Query: 183 LQDLPLQGYPYTWSRGKGSINAVEERIDRAMVTNTWLQKFPNIHLTNLVASISDHSPILL 362
           L D+P++G+P+TW + +G+ + +EER+DR M + +WLQ FP + L+NL+AS SDHSPILL
Sbjct: 121 LTDIPIEGHPFTWIKSRGTPHVIEERLDRVMASASWLQLFPQVRLSNLLASHSDHSPILL 180

Query: 363 QTCVNTQQKKSQKFKFENKWLQMDGLVEVVEGAWLLACDRNIEKRLGFCAEKLMNWSKNQ 542
           Q     +   S  F+FEN WL+   L +VV   W    +  +  R+  CA KL  W K +
Sbjct: 181 QCKPIIRTHISYSFRFENSWLKESDLEDVVVEGWGGRENLEVVDRVTRCANKLQRWGKRK 240

Query: 543 KINFRKDINHCNALLSYLR 599
           ++ F+++I+ C   ++ LR
Sbjct: 241 RVRFKEEIDECVRQMNELR 259



 Score =  104 bits (260), Expect(2) = 3e-70
 Identities = 48/109 (44%), Positives = 70/109 (64%)
 Frame = +2

Query: 668 QEECYWKQRAKIHWLKEGDNNTRFFHKFASARQRRNHLTKIQDDNGIWHEDQDEVCEIVK 847
           QEE YWKQRAK+HWL+EGD NTRFFH  A+AR ++  +TK+  +NG     Q+E+CE+ K
Sbjct: 283 QEEGYWKQRAKMHWLQEGDMNTRFFHMSATARSKKKKVTKLVAENGTEAHTQEELCEVAK 342

Query: 848 DYYEKFFSESDCVVEPVIDAVNSCITDEHNEILTKNFSLSEFTKAVKQM 994
            Y++  F   D   +PV++ +   +TD+ N  LT   +  E  +A+ QM
Sbjct: 343 SYFDNLFKPRDGDHDPVLNLIQPRVTDDDNFFLTAPITKVEIQQALFQM 391