BLASTX nr result

ID: Rehmannia32_contig00011838 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00011838
         (358 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKV71945.1| R2R3-MYB protein [Rehmannia glutinosa]                 202   3e-63

>gb|AKV71945.1| R2R3-MYB protein [Rehmannia glutinosa]
          Length = 267

 Score =  202 bits (514), Expect = 3e-63
 Identities = 99/118 (83%), Positives = 99/118 (83%)
 Frame = -3

Query: 356 PGRTDNDIKNYWNTXXXXXXLQYDQKMPDQATTTFPLIIPXXXXXXXXXXXXLPISDYSP 177
           PGRTDNDIKNYWNT      LQYDQKMPDQATTTFPLIIP            LPISDYSP
Sbjct: 98  PGRTDNDIKNYWNTKLKKKLLQYDQKMPDQATTTFPLIIPSNNNNSLVQNSSLPISDYSP 157

Query: 176 TYQISPSPYDQFGNNTIISSSNHLSVPSVHDGNLGFQSYFNIDDGNDDQKFLTSAPDE 3
           TYQISPSPYDQFGNNTIISSSNHLS PSVHDGNLGFQSYFNIDDGNDDQKFLTSAPDE
Sbjct: 158 TYQISPSPYDQFGNNTIISSSNHLSAPSVHDGNLGFQSYFNIDDGNDDQKFLTSAPDE 215


Top