BLASTX nr result
ID: Rehmannia32_contig00011232
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00011232
(1052 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011099592.1| DNA-directed RNA polymerase III subunit RPC5... 370 e-120
gb|EYU44675.1| hypothetical protein MIMGU_mgv1a004477mg [Erythra... 294 3e-92
ref|XP_012855127.1| PREDICTED: DNA-directed RNA polymerase III s... 294 1e-90
gb|KZV19013.1| hypothetical protein F511_08441 [Dorcoceras hygro... 271 1e-81
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora] 256 3e-76
emb|CDP02819.1| unnamed protein product [Coffea canephora] 254 5e-75
ref|XP_022870607.1| DNA-directed RNA polymerase III subunit RPC5... 251 2e-74
gb|EEF37239.1| DNA-directed RNA polymerase, putative [Ricinus co... 234 8e-68
ref|XP_017969869.1| PREDICTED: DNA-directed RNA polymerase III s... 232 1e-66
ref|XP_017969867.1| PREDICTED: DNA-directed RNA polymerase III s... 232 2e-66
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo... 229 2e-65
gb|EOX91150.1| Transcription regulators,zinc ion binding, putati... 229 3e-65
ref|XP_021273985.1| DNA-directed RNA polymerase III subunit RPC5... 228 6e-65
ref|XP_015890226.1| PREDICTED: DNA-directed RNA polymerase III s... 227 9e-65
gb|OMO56869.1| DNA-directed RNA polymerase III subunit Rpc5 [Cor... 206 3e-64
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 221 9e-63
ref|XP_010649171.1| PREDICTED: DNA-directed RNA polymerase III s... 221 1e-62
ref|XP_022775288.1| DNA-directed RNA polymerase III subunit RPC5... 219 5e-62
ref|XP_016697026.1| PREDICTED: DNA-directed RNA polymerase III s... 213 2e-59
gb|KJB43539.1| hypothetical protein B456_007G205200 [Gossypium r... 211 3e-59
>ref|XP_011099592.1| DNA-directed RNA polymerase III subunit RPC5 [Sesamum indicum]
Length = 683
Score = 370 bits (951), Expect = e-120
Identities = 190/302 (62%), Positives = 220/302 (72%), Gaps = 12/302 (3%)
Frame = -3
Query: 984 MADMDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEE 805
MADMDLDELLDGPS+ PNRP+RFAPKGSKFKPRPK EPSQ P +ASD++E LP+PKKEE
Sbjct: 1 MADMDLDELLDGPSQVPNRPSRFAPKGSKFKPRPKTEPSQLPPPAASDTVEGLPVPKKEE 60
Query: 804 LGIKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXEIDVYFTP 625
GIK DIKPE+ ND +M LM IDVYFTP
Sbjct: 61 PGIKPDIKPEFANDGNDMDVEVKPEVKEEEGDDLMETEAEAEPDDAIVRE---IDVYFTP 117
Query: 624 FVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYDSGADPR 445
+D TRLYVLQYPLRPLWRPYELD+ C+EVRVKP SAE+E+DLAVDVDSKNYDSGADPR
Sbjct: 118 SIDSNTRLYVLQYPLRPLWRPYELDDRCDEVRVKPASAELEVDLAVDVDSKNYDSGADPR 177
Query: 444 VQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRESKRKTVGS 265
VQMKKQILT+ WKPPH SG+AVG+LTGNKL+LNP+H VVQLRPS+QHL++++SKRKT+
Sbjct: 178 VQMKKQILTSSWKPPHASGYAVGILTGNKLHLNPVHAVVQLRPSMQHLDAKDSKRKTI-- 235
Query: 264 SNVNDTVKSEEPQEGKPSGSSKK------------PDWVPLKYSRPRTVKRSGFLSNTIV 121
NV D VK EEPQEGKPSGSSKK W+PLKY ++ +G+L +
Sbjct: 236 -NVEDRVKLEEPQEGKPSGSSKKLSKVPEQNNDSGEGWIPLKYHSAKSDVAAGYLRKMMS 294
Query: 120 RG 115
RG
Sbjct: 295 RG 296
Score = 79.0 bits (193), Expect = 3e-12
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = -2
Query: 172 QQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
+Q DS E W+PLKYHS SD+ A YL+KM ++ GSQI FSMSS D+LNSLCPG SS
Sbjct: 263 EQNNDSGEGWIPLKYHSAKSDVAAGYLRKMMSRGGSQIYFSMSSCDYLNSLCPGTSS 319
>gb|EYU44675.1| hypothetical protein MIMGU_mgv1a004477mg [Erythranthe guttata]
Length = 525
Score = 294 bits (753), Expect = 3e-92
Identities = 161/305 (52%), Positives = 194/305 (63%), Gaps = 7/305 (2%)
Frame = -3
Query: 984 MADMDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEE 805
MADMDLD+LLD + P R RFAPKG K P+PK EPSQ LP SASD M++LP+PKKEE
Sbjct: 1 MADMDLDDLLDAKPRAPTRVVRFAPKGGKLNPKPKIEPSQPLPPSASDPMDTLPLPKKEE 60
Query: 804 LG--IKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXE----I 643
I+ DIKPE+ N A+EM E I
Sbjct: 61 PKPEIEPDIKPEHANGAMEMDVEVKPDVKVKEDLMETEVAESVLDPVVKESTVDEVVREI 120
Query: 642 DVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYD 463
DVY VDP T L+V QYPLRPLWRPYELDE C+EVRVKP+ VEIDLAVD SKNYD
Sbjct: 121 DVYLNHSVDPNTCLHVWQYPLRPLWRPYELDEKCDEVRVKPSGEGVEIDLAVDTYSKNYD 180
Query: 462 SGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRES- 286
+ ADP++QM+KQ L + W PPH SG AV VL GNKLYLNPIH VVQLRPS++HL++ +S
Sbjct: 181 TTADPKLQMQKQTLRSTWMPPHASGQAVAVLVGNKLYLNPIHAVVQLRPSMKHLDAEDSK 240
Query: 285 KRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPDWVPLKYSRPRTVKRSGFLSNTIVRGVT* 106
K+KT SN D+VK E+PQ PSG+ KPDWVPLKY R+ + ++ + R V
Sbjct: 241 KKKTNARSNTKDSVKLEDPQ---PSGAQTKPDWVPLKYHSARSDMAATYVKKMMAREVEG 297
Query: 105 QQDTY 91
Q ++
Sbjct: 298 SQISF 302
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/54 (64%), Positives = 44/54 (81%), Gaps = 2/54 (3%)
Frame = -2
Query: 157 SEEEWVPLKYHSTGSDLTARYLQKMKAQE--GSQISFSMSSYDHLNSLCPGASS 2
++ +WVPLKYHS SD+ A Y++KM A+E GSQISFSMSS D++NSLCPG SS
Sbjct: 266 TKPDWVPLKYHSARSDMAATYVKKMMAREVEGSQISFSMSSNDYINSLCPGTSS 319
>ref|XP_012855127.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5
[Erythranthe guttata]
Length = 676
Score = 294 bits (753), Expect = 1e-90
Identities = 161/305 (52%), Positives = 194/305 (63%), Gaps = 7/305 (2%)
Frame = -3
Query: 984 MADMDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEE 805
MADMDLD+LLD + P R RFAPKG K P+PK EPSQ LP SASD M++LP+PKKEE
Sbjct: 1 MADMDLDDLLDAKPRAPTRVVRFAPKGGKLNPKPKIEPSQPLPPSASDPMDTLPLPKKEE 60
Query: 804 LG--IKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXE----I 643
I+ DIKPE+ N A+EM E I
Sbjct: 61 PKPEIEPDIKPEHANGAMEMDVEVKPDVKVKEDLMETEVAESVLDPVVKESTVDEVVREI 120
Query: 642 DVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYD 463
DVY VDP T L+V QYPLRPLWRPYELDE C+EVRVKP+ VEIDLAVD SKNYD
Sbjct: 121 DVYLNHSVDPNTCLHVWQYPLRPLWRPYELDEKCDEVRVKPSGEGVEIDLAVDTYSKNYD 180
Query: 462 SGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRES- 286
+ ADP++QM+KQ L + W PPH SG AV VL GNKLYLNPIH VVQLRPS++HL++ +S
Sbjct: 181 TTADPKLQMQKQTLRSTWMPPHASGQAVAVLVGNKLYLNPIHAVVQLRPSMKHLDAEDSK 240
Query: 285 KRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPDWVPLKYSRPRTVKRSGFLSNTIVRGVT* 106
K+KT SN D+VK E+PQ PSG+ KPDWVPLKY R+ + ++ + R V
Sbjct: 241 KKKTNARSNTKDSVKLEDPQ---PSGAQTKPDWVPLKYHSARSDMAATYVKKMMAREVEG 297
Query: 105 QQDTY 91
Q ++
Sbjct: 298 SQISF 302
Score = 73.6 bits (179), Expect = 2e-10
Identities = 35/54 (64%), Positives = 44/54 (81%), Gaps = 2/54 (3%)
Frame = -2
Query: 157 SEEEWVPLKYHSTGSDLTARYLQKMKAQE--GSQISFSMSSYDHLNSLCPGASS 2
++ +WVPLKYHS SD+ A Y++KM A+E GSQISFSMSS D++NSLCPG SS
Sbjct: 266 TKPDWVPLKYHSARSDMAATYVKKMMAREVEGSQISFSMSSNDYINSLCPGTSS 319
>gb|KZV19013.1| hypothetical protein F511_08441 [Dorcoceras hygrometricum]
Length = 686
Score = 271 bits (693), Expect = 1e-81
Identities = 154/308 (50%), Positives = 187/308 (60%), Gaps = 21/308 (6%)
Frame = -3
Query: 978 DMDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSME-------SLPI 820
D DLDELL GP++ P+RP RF PKGSKFKPR K EPSQ L S+SD E S+P
Sbjct: 5 DFDLDELLGGPAQVPSRPTRFNPKGSKFKPRAKIEPSQQLSASSSDPAELIRKESDSIPS 64
Query: 819 PKKEELGIKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXL--MXXXXXXXXXXXXXXXXXE 646
PKKEELG+K PE+ ND +EM E
Sbjct: 65 PKKEELGVK----PEFANDVVEMDIDFKHGEIVDNEVKKEETEDLMETGEGEAEDEVVRE 120
Query: 645 IDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNY 466
IDVY T +DP TRLYVLQYPLRPLWRPYE++E CE+VRVKP S E+E+DLA+D +SKNY
Sbjct: 121 IDVYLTSSLDPNTRLYVLQYPLRPLWRPYEMEERCEQVRVKPASNEIEVDLAIDFESKNY 180
Query: 465 DSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRES 286
D A R MK+Q L + WKPPH SG+AVG L+LNP+H VVQLRPS++HL+SRES
Sbjct: 181 DRDAGSRFLMKRQTLASAWKPPHTSGYAVG------LHLNPVHAVVQLRPSMEHLDSRES 234
Query: 285 KRKTVGSSNVNDTVKSEEPQEGKPSGSSK---KP---------DWVPLKYSRPRTVKRSG 142
KRK V S V TVK+EE +EGK SG+S KP DW+PL + R+ S
Sbjct: 235 KRKVV--SGVEGTVKAEENKEGKFSGASNQSIKPSGQEKDIAEDWIPLTFRSARSDMASR 292
Query: 141 FLSNTIVR 118
+ + +
Sbjct: 293 YSEKMVAQ 300
Score = 72.0 bits (175), Expect = 5e-10
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = -2
Query: 169 QTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
Q KD E+W+PL + S SD+ +RY +KM AQEGS I FSM+SYD+LNSL PG S+
Sbjct: 269 QEKDIAEDWIPLTFRSARSDMASRYSEKMVAQEGSAIDFSMTSYDYLNSLYPGNSN 324
>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
Length = 643
Score = 256 bits (654), Expect = 3e-76
Identities = 139/286 (48%), Positives = 172/286 (60%), Gaps = 13/286 (4%)
Frame = -3
Query: 975 MDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPI-PKKEELG 799
MD D+L D PS+ P RP+RFAPKGSKFKPR + + S ++ + ++S P+ P
Sbjct: 1 MDFDDL-DEPSQAPTRPSRFAPKGSKFKPRTEPVAATSNSIAKKEELDSKPVSPINSSTT 59
Query: 798 IKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXEIDVYFTPFV 619
+ + + ++ EIDVY TP +
Sbjct: 60 AAAGKAEDAASASVSQSVAMDVDAKVEEEAEQPKDEPMESREEGEDEIVREIDVYLTPSI 119
Query: 618 DPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYDSGADPRVQ 439
DP T+LYVLQYPLRPLWRPYELD+ CEEVRVK SAEVE+DLAVDVDSKNYDS ADPRV
Sbjct: 120 DPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVDSKNYDSDADPRVS 179
Query: 438 MKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRESKRKTVGSSN 259
M KQ LT+ WKPP +G+AVGVL GNKL+LNPIH VVQLRPS+QH + SKR+T SSN
Sbjct: 180 MTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSKRRTTASSN 239
Query: 258 VNDTVKSEE------PQEGKPSG------SSKKPDWVPLKYSRPRT 157
+ D K EE ++GKPSG + DW+PL Y R+
Sbjct: 240 LEDNTKGEEVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGARS 285
Score = 65.5 bits (158), Expect = 7e-08
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = -2
Query: 175 IQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
I+Q KD+ E+W+PL YH SD++ Y++KM + S I FSM ++D++N+LCPG S+
Sbjct: 265 IEQNKDTREDWIPLNYHGARSDISMSYVRKMVEHDSSHIQFSM-NHDYVNTLCPGTSN 321
>emb|CDP02819.1| unnamed protein product [Coffea canephora]
Length = 687
Score = 254 bits (648), Expect = 5e-75
Identities = 138/286 (48%), Positives = 171/286 (59%), Gaps = 13/286 (4%)
Frame = -3
Query: 975 MDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPI-PKKEELG 799
MD D+L D PS+ P RP+RFAPKGSKFKPR + + S ++ + ++S P+ P
Sbjct: 1 MDFDDL-DEPSQAPTRPSRFAPKGSKFKPRTEPVAATSNSIAKKEELDSKPVSPINSSTT 59
Query: 798 IKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXEIDVYFTPFV 619
+ + + ++ EIDVY TP +
Sbjct: 60 AAAGKAEDAASASVSQSVAMDVDAKVEEEAEQPKDEPMESREEGEDEIVREIDVYLTPSI 119
Query: 618 DPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYDSGADPRVQ 439
DP T+LYVLQYPLRPLWRPYELD+ CEEVRVK SAEVE+DLAVDVDSKNYDS ADPRV
Sbjct: 120 DPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKSKSAEVEVDLAVDVDSKNYDSDADPRVS 179
Query: 438 MKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRESKRKTVGSSN 259
M KQ LT+ WKPP +G+AVGVL GNKL+LNPIH VVQLRPS+QH + SKR+T SSN
Sbjct: 180 MTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSKRRTTASSN 239
Query: 258 VNDTVKSEE------PQEGKPSG------SSKKPDWVPLKYSRPRT 157
+ D K EE ++GK SG + DW+PL Y R+
Sbjct: 240 LEDNTKGEEVTTGSLKKQGKSSGPVIEQNKDTREDWIPLNYHGARS 285
Score = 70.5 bits (171), Expect = 2e-09
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = -2
Query: 205 IKETGLGSSQ-IQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHL 29
+K+ G S I+Q KD+ E+W+PL YH SD++ Y++KM + S I FSM+ +D++
Sbjct: 254 LKKQGKSSGPVIEQNKDTREDWIPLNYHGARSDISMSYVRKMVEHDSSHIQFSMNRHDYV 313
Query: 28 NSLCPGASS 2
N+LCPG S+
Sbjct: 314 NTLCPGTSN 322
>ref|XP_022870607.1| DNA-directed RNA polymerase III subunit RPC5-like [Olea europaea
var. sylvestris]
ref|XP_022870608.1| DNA-directed RNA polymerase III subunit RPC5-like [Olea europaea
var. sylvestris]
Length = 627
Score = 251 bits (640), Expect = 2e-74
Identities = 139/288 (48%), Positives = 173/288 (60%), Gaps = 12/288 (4%)
Frame = -3
Query: 984 MADMDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEE 805
MADMDLD+LL P++GP+RPARFAPKGSKFKP KKEE
Sbjct: 1 MADMDLDDLLVVPTQGPSRPARFAPKGSKFKPTVST--------------------KKEE 40
Query: 804 LGIKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXE------I 643
++D +PEY + +EM + I
Sbjct: 41 PKEEADARPEYEKNEVEMDFEVEVKPDEENENEIKEKMIDDLMETDEAEGEGPDDIVREI 100
Query: 642 DVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYD 463
DVYF P +DP TRLYVLQYPLRP+WRPYEL++ CEEVRVKP S+E EIDLAV+ DS NYD
Sbjct: 101 DVYFAPSIDPYTRLYVLQYPLRPVWRPYELEDRCEEVRVKPASSEFEIDLAVNFDSDNYD 160
Query: 462 SGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRESK 283
ADPRVQ+ KQ L + WKPP SG+AVGVL GNKL+LNPIH+VVQLRPS+QHL+ R+SK
Sbjct: 161 RDADPRVQIMKQTLASSWKPPRTSGYAVGVLRGNKLHLNPIHSVVQLRPSMQHLKPRDSK 220
Query: 282 RKTVGSSNVNDTVKSE----EPQEGKPSGSSKK--PDWVPLKYSRPRT 157
K + +V + ++ + ++ KPSG +K WVPLKY R+
Sbjct: 221 NKKTETGSVEEPMEEKSLEASKKQTKPSGQNKDSGEHWVPLKYHNARS 268
Score = 84.7 bits (208), Expect = 3e-14
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = -2
Query: 169 QTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
Q KDS E WVPLKYH+ SD+ RYLQKM AQEGS I+FSMSS D+LN LCPG SS
Sbjct: 250 QNKDSGEHWVPLKYHNARSDIADRYLQKMAAQEGSPINFSMSSRDYLNRLCPGTSS 305
>gb|EEF37239.1| DNA-directed RNA polymerase, putative [Ricinus communis]
Length = 677
Score = 234 bits (598), Expect = 8e-68
Identities = 133/296 (44%), Positives = 177/296 (59%), Gaps = 10/296 (3%)
Frame = -3
Query: 975 MDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPSQS----LPLSASDSME--SLPIPK 814
MD + LD PS+ P+RP+++APK +KFKP+PK +P+ LP S S+ E + P+ K
Sbjct: 1 MDGLDDLDKPSQVPSRPSKYAPKSAKFKPQPKTKPNPKPDPQLPSSNSELQEPQNAPLSK 60
Query: 813 KEELGIKSDIKPEYV----NDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXE 646
K E + +IKP+ + N+A E
Sbjct: 61 KNEDDEEEEIKPKIISTPKNEAWLSNNGAVKMEIDDSMDEDKREEGENEEEEEEDMIVRE 120
Query: 645 IDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNY 466
IDV+FTP +D T+LYV+QYPLRP WRPYELDE CEEVRVKP S EVE+DL +D DS N+
Sbjct: 121 IDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTID-DSSNW 179
Query: 465 DSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRES 286
D + KKQ L+ + PP ++G+AVGVL GNKL+LNPIH VVQLRPS++H+ S +S
Sbjct: 180 DPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVNSNDS 239
Query: 285 KRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPDWVPLKYSRPRTVKRSGFLSNTIVR 118
KRK S+ +N VK E+ EGKP GSSKK W+ LKY ++ S +L I +
Sbjct: 240 KRK--NSATLNPEVKLEDSNEGKPIGSSKKQCWISLKYHGSKSDFSSRYLEKMIAQ 293
Score = 62.8 bits (151), Expect = 5e-07
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -2
Query: 145 WVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
W+ LKYH + SD ++RYL+KM AQE S + F+M+ YD+++SLCP AS+
Sbjct: 270 WISLKYHGSKSDFSSRYLEKMIAQESSPMEFTMTPYDYMSSLCPVASN 317
>ref|XP_017969869.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2
[Theobroma cacao]
Length = 702
Score = 232 bits (591), Expect = 1e-66
Identities = 139/300 (46%), Positives = 170/300 (56%), Gaps = 32/300 (10%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPR------PKAEPSQSL-PLSASDSMESLP 823
MDLD+L LDGPS+ R +FAPK SKF PR PK EPS PL++ E P
Sbjct: 1 MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKPKPEPSSKQEPLNSGPKPEPPP 60
Query: 822 IP------KKEELGIKSDIKPEYVNDA-IEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXX 664
P +++ + DIKP + + E
Sbjct: 61 PPPPPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGNREEE 120
Query: 663 XXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVD 484
EIDV+FTP +D T+LYVLQYPLRP WRPYELDE CEEVRVKP S EVE+DLAVD
Sbjct: 121 DMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVD 180
Query: 483 VDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQH 304
VDS NYDS R++M KQ L++ W PP +G+AVGVL G+KL+LNPIH VVQLRPS+ H
Sbjct: 181 VDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCH 240
Query: 303 LESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD----------------WVPLKY 172
L+ SKRK +++ TVK EEP +GK +GSS K + WVPLKY
Sbjct: 241 LKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKY 300
Score = 75.5 bits (184), Expect = 4e-11
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S +Q D +E WVPLKYHS+ +D +A+YLQ+M A+E I F+MS YD+++SLCPGAS+
Sbjct: 283 SSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCPIQFTMSPYDYVDSLCPGASN 342
>ref|XP_017969867.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
[Theobroma cacao]
Length = 738
Score = 232 bits (591), Expect = 2e-66
Identities = 139/300 (46%), Positives = 170/300 (56%), Gaps = 32/300 (10%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPR------PKAEPSQSL-PLSASDSMESLP 823
MDLD+L LDGPS+ R +FAPK SKF PR PK EPS PL++ E P
Sbjct: 1 MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKPKPEPSSKQEPLNSGPKPEPPP 60
Query: 822 IP------KKEELGIKSDIKPEYVNDA-IEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXX 664
P +++ + DIKP + + E
Sbjct: 61 PPPPPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGNREEE 120
Query: 663 XXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVD 484
EIDV+FTP +D T+LYVLQYPLRP WRPYELDE CEEVRVKP S EVE+DLAVD
Sbjct: 121 DMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVD 180
Query: 483 VDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQH 304
VDS NYDS R++M KQ L++ W PP +G+AVGVL G+KL+LNPIH VVQLRPS+ H
Sbjct: 181 VDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCH 240
Query: 303 LESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD----------------WVPLKY 172
L+ SKRK +++ TVK EEP +GK +GSS K + WVPLKY
Sbjct: 241 LKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKY 300
Score = 75.5 bits (184), Expect = 4e-11
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S +Q D +E WVPLKYHS+ +D +A+YLQ+M A+E I F+MS YD+++SLCPGAS+
Sbjct: 283 SSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCPIQFTMSPYDYVDSLCPGASN 342
>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
Length = 700
Score = 229 bits (583), Expect = 2e-65
Identities = 138/298 (46%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPRPKA------EPSQSL-PLSASDSMESLP 823
MDLD+L LDGPS+ R +FAPK SKF PR K EPS PL++ E P
Sbjct: 1 MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKLKPEPSSKQEPLNSGPKPEPPP 60
Query: 822 IP----KKEELGIKSDIKPEYVNDA-IEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXX 658
P +++ + DIKP + + E
Sbjct: 61 PPPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGNREEEDM 120
Query: 657 XXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVD 478
EIDV+FTP +D T+LYVLQYPLRP WRPYELDE CEEVRVKP S EVE+DLAVDVD
Sbjct: 121 VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 180
Query: 477 SKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLE 298
S NYDS R++M KQ L++ W PP +G+AVGVL G+KL+LNPIH VVQLRPS+ HL+
Sbjct: 181 SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 240
Query: 297 SRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD----------------WVPLKY 172
SKRK +++ TVK EEP +GK +GSS K + WVPLKY
Sbjct: 241 PSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKY 298
Score = 76.3 bits (186), Expect = 2e-11
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S +Q D +E WVPLKYHS+ +D +A+YLQ+M A+E +I F+MS YD+++SLCPGAS+
Sbjct: 281 SSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASN 340
>gb|EOX91150.1| Transcription regulators,zinc ion binding, putative isoform 3
[Theobroma cacao]
Length = 736
Score = 229 bits (583), Expect = 3e-65
Identities = 138/298 (46%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPRPKA------EPSQSL-PLSASDSMESLP 823
MDLD+L LDGPS+ R +FAPK SKF PR K EPS PL++ E P
Sbjct: 1 MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKLKPEPSSKQEPLNSGPKPEPPP 60
Query: 822 IP----KKEELGIKSDIKPEYVNDA-IEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXX 658
P +++ + DIKP + + E
Sbjct: 61 PPPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGNREEEDM 120
Query: 657 XXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVD 478
EIDV+FTP +D T+LYVLQYPLRP WRPYELDE CEEVRVKP S EVE+DLAVDVD
Sbjct: 121 VVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVD 180
Query: 477 SKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLE 298
S NYDS R++M KQ L++ W PP +G+AVGVL G+KL+LNPIH VVQLRPS+ HL+
Sbjct: 181 SNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLK 240
Query: 297 SRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD----------------WVPLKY 172
SKRK +++ TVK EEP +GK +GSS K + WVPLKY
Sbjct: 241 PSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKY 298
Score = 76.3 bits (186), Expect = 2e-11
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S +Q D +E WVPLKYHS+ +D +A+YLQ+M A+E +I F+MS YD+++SLCPGAS+
Sbjct: 281 SSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASN 340
>ref|XP_021273985.1| DNA-directed RNA polymerase III subunit RPC5 [Herrania umbratica]
Length = 707
Score = 228 bits (580), Expect = 6e-65
Identities = 136/310 (43%), Positives = 172/310 (55%), Gaps = 42/310 (13%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPR------PKAEPSQSLPLSASDSMESLPI 820
MDLD+L LDGPS+ R +FAPK SKF P+ PK EPS S + ++S P
Sbjct: 1 MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPKLKPNFKPKPEPS-----SRQEPLDSAPK 55
Query: 819 PK-------------KEELGIKSDIKPEYVND-----AIEMXXXXXXXXXXXXXXXLMXX 694
PK K++ + D+KP + + + +M
Sbjct: 56 PKPPPPPPPPPESISKKKENEEEDVKPPVIAETKTEQSFSNGSVKMEIEEEAKEDVIMNE 115
Query: 693 XXXXXXXXXXXXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTS 514
EIDV+FTP +D T+LYVLQYPLRP WRPYELDE CEEVRVKP +
Sbjct: 116 GNKEEEQEEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPAT 175
Query: 513 AEVEIDLAVDVDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHT 334
EVE+D+AVDVDS NYDS R+ M KQ L++ W PP +G+AVGVL G+KL+LNPIH
Sbjct: 176 GEVEMDMAVDVDSNNYDSERASRLMMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHA 235
Query: 333 VVQLRPSVQHLESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD------------ 190
VVQLRPS+ HL+ SKRK +++ TVK EEP +GK +GSS K +
Sbjct: 236 VVQLRPSMYHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRIQSSTEQRAD 295
Query: 189 ----WVPLKY 172
WVPLKY
Sbjct: 296 DKECWVPLKY 305
Score = 75.9 bits (185), Expect = 3e-11
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S +Q D +E WVPLKYHS+ +D +A+YLQ+M A+E I F+MS YD+++SLCPGAS+
Sbjct: 288 SSTEQRADDKECWVPLKYHSSKNDFSAQYLQRMMAEESRSIQFTMSPYDYVDSLCPGASN 347
>ref|XP_015890226.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Ziziphus
jujuba]
Length = 696
Score = 227 bits (578), Expect = 9e-65
Identities = 139/316 (43%), Positives = 182/316 (57%), Gaps = 30/316 (9%)
Frame = -3
Query: 975 MDLDELLDGPSKGPNRPARFAPKGSKFKPRPKAEPS------QSLPLS------ASDSME 832
MDL++ D P++ P+R +RFAPK SKFKPRPK+EP+ +S+P + AS +
Sbjct: 1 MDLEDF-DAPNQAPSRISRFAPK-SKFKPRPKSEPTSEPEPQESIPKAEPGEPAASKTAT 58
Query: 831 SLPIPKKEELGI-----KSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXX 667
+P+K E GI KSD+ N A+++ +
Sbjct: 59 PEVVPRKFE-GIEVPPPKSDVSAS--NGAVKLEVEPKVEATEEPKGNDLMEEDAAEDTVI 115
Query: 666 XXXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAV 487
IDV+ P +D +T+LYVLQYPLRP WRPYELDE CEEVRVKP SAEVE+DLA+
Sbjct: 116 RE-----IDVFLNPKIDDETQLYVLQYPLRPWWRPYELDERCEEVRVKPASAEVEVDLAL 170
Query: 486 DVDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQ 307
DVDSKNYD +++M KQ L+ W+PP +G+AVGVL GNKL+LNPIH VVQLRPS++
Sbjct: 171 DVDSKNYDQDFGSKLRMTKQTLSCSWEPPRKTGYAVGVLMGNKLHLNPIHAVVQLRPSLE 230
Query: 306 HLESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSK-------------KPDWVPLKYSR 166
HL SKRK + + +DTVK EE E KP GS K + WVPLKY
Sbjct: 231 HLRCPSSKRKNSVTGDADDTVKLEESSERKPIGSKKQQVHSSLEQKTIDEECWVPLKYHG 290
Query: 165 PRTVKRSGFLSNTIVR 118
+ S +L + +
Sbjct: 291 SGSEFSSRYLERMVAQ 306
Score = 70.9 bits (172), Expect = 1e-09
Identities = 28/60 (46%), Positives = 47/60 (78%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S ++Q EE WVPLKYH +GS+ ++RYL++M AQE + + F+++ YD+++SLCPG+++
Sbjct: 271 SSLEQKTIDEECWVPLKYHGSGSEFSSRYLERMVAQERAPLQFTLNPYDYIDSLCPGSNN 330
>gb|OMO56869.1| DNA-directed RNA polymerase III subunit Rpc5 [Corchorus capsularis]
Length = 700
Score = 206 bits (525), Expect(2) = 3e-64
Identities = 124/298 (41%), Positives = 158/298 (53%), Gaps = 30/298 (10%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKP--RPKAEPSQSLPLSASDSMESLPIP--- 817
MDLD+L LDGP +G R +FAPK +KF P +PK+EP + E I
Sbjct: 1 MDLDDLDELDGPRQGNTRTTKFAPKSTKFAPSRKPKSEPKAETKVETKVEKEQEDIKPVI 60
Query: 816 --------------------KKEELGIKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXL-- 703
+ +E K +I E DA +M
Sbjct: 61 AELKTEQSVLNGAAKMEIDAEAKEDAAKMEIVAEAKEDAAKMEIVAEAKEDVIMNDQTGE 120
Query: 702 -MXXXXXXXXXXXXXXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRV 526
EIDV+FTP VD T+LYVLQYP+RP WRPY+LDE CEEVRV
Sbjct: 121 EEEQQELAVAAAEEDMVVREIDVFFTPSVDANTQLYVLQYPMRPCWRPYDLDERCEEVRV 180
Query: 525 KPTSAEVEIDLAVDVDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLN 346
KP + EVE+D++VDVDS N+D +++M KQ L+ W P +G AVGVL G+KL+LN
Sbjct: 181 KPATGEVEVDMSVDVDSNNFDKECASKLKMNKQTLSTSWLPSRATGIAVGVLMGDKLHLN 240
Query: 345 PIHTVVQLRPSVQHLESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPDWVPLKY 172
PI+ VVQLRPS++HL+ SKRK ++ TVK EE + K GSS K WVPLKY
Sbjct: 241 PINAVVQLRPSMEHLKPSVSKRKNTVEADAEVTVKVEERTDEKEVGSSTKQCWVPLKY 298
Score = 68.9 bits (167), Expect(2) = 3e-64
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = -2
Query: 145 WVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
WVPLKYHS+ SD +A+Y+Q+M A+E S I F+M+ YD+++SLCPGA++
Sbjct: 293 WVPLKYHSSKSDFSAQYVQRMMAEESSPIQFAMNPYDYVDSLCPGANN 340
>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X4
[Vitis vinifera]
Length = 672
Score = 221 bits (563), Expect = 9e-63
Identities = 133/272 (48%), Positives = 158/272 (58%), Gaps = 4/272 (1%)
Frame = -3
Query: 975 MDLDELLDGPSKGP-NRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEELG 799
MDLD+L DGP++ P RP+RFAPK SK K PK EPS S D + I KKEE
Sbjct: 1 MDLDDL-DGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTL--INKKEE-- 55
Query: 798 IKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXE--IDVYFTP 625
D +P V A E IDV+FTP
Sbjct: 56 ---DSQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVFFTP 112
Query: 624 F-VDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYDSGADP 448
D T++YVLQYPLRP WRPYEL E C+EVRVKP SAEVE+DL++DVDSKNYD A
Sbjct: 113 PPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPN 172
Query: 447 RVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRESKRKTVG 268
+MKKQ L+ WKPP +G+ VGVL GNKL+LNPIH VVQLRPS+++L S +KRK
Sbjct: 173 AQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNV 232
Query: 267 SSNVNDTVKSEEPQEGKPSGSSKKPDWVPLKY 172
+ + N VK E E + GS KK WVPLKY
Sbjct: 233 TGDTNSAVKLEVSNEEESVGSLKKQSWVPLKY 264
Score = 68.6 bits (166), Expect = 7e-09
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 9/70 (12%)
Frame = -2
Query: 196 TGLGSSQIQQTKDSEEE---------WVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMS 44
TG +S ++ +EEE WVPLKYHS+ SD +ARYLQKM A++ S I F MS
Sbjct: 233 TGDTNSAVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMS 292
Query: 43 SYDHLNSLCP 14
Y+++NSLCP
Sbjct: 293 PYEYVNSLCP 302
>ref|XP_010649171.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X3
[Vitis vinifera]
Length = 677
Score = 221 bits (563), Expect = 1e-62
Identities = 133/272 (48%), Positives = 158/272 (58%), Gaps = 4/272 (1%)
Frame = -3
Query: 975 MDLDELLDGPSKGP-NRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEELG 799
MDLD+L DGP++ P RP+RFAPK SK K PK EPS S D + I KKEE
Sbjct: 1 MDLDDL-DGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTL--INKKEE-- 55
Query: 798 IKSDIKPEYVNDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXXXXXXXXE--IDVYFTP 625
D +P V A E IDV+FTP
Sbjct: 56 ---DSQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVFFTP 112
Query: 624 F-VDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAVDVDSKNYDSGADP 448
D T++YVLQYPLRP WRPYEL E C+EVRVKP SAEVE+DL++DVDSKNYD A
Sbjct: 113 PPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPN 172
Query: 447 RVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQHLESRESKRKTVG 268
+MKKQ L+ WKPP +G+ VGVL GNKL+LNPIH VVQLRPS+++L S +KRK
Sbjct: 173 AQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNV 232
Query: 267 SSNVNDTVKSEEPQEGKPSGSSKKPDWVPLKY 172
+ + N VK E E + GS KK WVPLKY
Sbjct: 233 TGDTNSAVKLEVSNEEESVGSLKKQSWVPLKY 264
Score = 68.6 bits (166), Expect = 7e-09
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 9/70 (12%)
Frame = -2
Query: 196 TGLGSSQIQQTKDSEEE---------WVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMS 44
TG +S ++ +EEE WVPLKYHS+ SD +ARYLQKM A++ S I F MS
Sbjct: 233 TGDTNSAVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMS 292
Query: 43 SYDHLNSLCP 14
Y+++NSLCP
Sbjct: 293 PYEYVNSLCP 302
>ref|XP_022775288.1| DNA-directed RNA polymerase III subunit RPC5 [Durio zibethinus]
Length = 697
Score = 219 bits (559), Expect = 5e-62
Identities = 133/301 (44%), Positives = 169/301 (56%), Gaps = 33/301 (10%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPRPKAEPSQSLPLSASDSMESLPIPKKEEL 802
M+LD+L L+GPS+ R +FAPK K +PKA+ S + E P P E +
Sbjct: 1 MELDDLAELEGPSQANTRTTKFAPK-LKPNSKPKAKSSSKQEPQVTAKPEPPPPPPPESI 59
Query: 801 GIKS-----DIKPEYV----------NDAIEMXXXXXXXXXXXXXXXLMXXXXXXXXXXX 667
K D+KP V N A++M M
Sbjct: 60 SKKKENEVEDLKPPVVAEPKAEQSLSNGAVKMEIEEEAKEDEI-----MNEENKEEEQGE 114
Query: 666 XXXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTSAEVEIDLAV 487
EIDVYFTP +D T+LYVLQYPLRP WRPYELDE CEEVRVKP+S EVEI+++V
Sbjct: 115 EDMVVREIDVYFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPSSGEVEIEMSV 174
Query: 486 DVDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHTVVQLRPSVQ 307
DVDS NYDS ++++ KQ L++ W PP +GFAVGVLTG+KL+LNPIH VVQLRPS++
Sbjct: 175 DVDSNNYDSECASKLKITKQTLSSSWLPPRATGFAVGVLTGDKLHLNPIHAVVQLRPSLE 234
Query: 306 HLESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD----------------WVPLK 175
HL+ SKRK+ +++ TVK EEP +GK G S K + WVPLK
Sbjct: 235 HLKPSVSKRKSTVATDAEVTVKVEEPNDGKAVGPSTKQNKRIQSSTEQKADDKECWVPLK 294
Query: 174 Y 172
Y
Sbjct: 295 Y 295
Score = 75.1 bits (183), Expect = 5e-11
Identities = 33/60 (55%), Positives = 45/60 (75%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCPGASS 2
S +Q D +E WVPLKYHS+ SD +A+YLQ+M +E I F+MS YD+++SLCPGAS+
Sbjct: 278 SSTEQKADDKECWVPLKYHSSKSDFSAQYLQRMMTEESCPIQFTMSPYDYVDSLCPGASN 337
>ref|XP_016697026.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
isoform X1 [Gossypium hirsutum]
Length = 703
Score = 213 bits (541), Expect = 2e-59
Identities = 134/310 (43%), Positives = 169/310 (54%), Gaps = 42/310 (13%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPR------PKAEPSQSLPLSASDSMESLPI 820
MDLD+L LDG S+ R +FAPK SKF P+ PK EPS S + +S P
Sbjct: 1 MDLDDLGELDGSSQANTRTTKFAPKSSKFAPKLKSTSKPKPEPS-----SKQEPQDSAPK 55
Query: 819 PK--------KEELGIKSDIKPEYV----------NDAIEMXXXXXXXXXXXXXXXLMXX 694
P+ K++ + D+KP V N A++M
Sbjct: 56 PQPPPVEAVSKKKENDEEDVKPPMVAEPKAEQSISNGAVKMEIDEETKEDEILTEANREE 115
Query: 693 XXXXXXXXXXXXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTS 514
IDV+FTP +D +LYVLQYPLRP WRPYELDE C+EVRVKP S
Sbjct: 116 DQGEEEDTVVRE----IDVFFTPSIDADAQLYVLQYPLRPCWRPYELDERCKEVRVKPDS 171
Query: 513 AEVEIDLAVDVDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHT 334
EVEID++VDVDS NYDS + +++M KQ L++ W PP SG+AVGVL G+KL+LNPIH
Sbjct: 172 GEVEIDMSVDVDSNNYDSESANKLKMTKQTLSSSWLPPRPSGYAVGVLMGDKLHLNPIHA 231
Query: 333 VVQLRPSVQHLESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD------------ 190
VVQLRPS+ HL+S SKRK ++ TVK EP +GK +G S K +
Sbjct: 232 VVQLRPSLAHLKSGVSKRKDTVAAEAEVTVK-VEPNDGKAAGPSAKQNQKVQSSTEQKAE 290
Query: 189 ----WVPLKY 172
WVPLKY
Sbjct: 291 DKECWVPLKY 300
Score = 68.9 bits (167), Expect = 5e-09
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCP 14
S +Q + +E WVPLKYHS+ SD +A+YLQKM A++ S I F+++ YD+++SLCP
Sbjct: 283 SSTEQKAEDKECWVPLKYHSSKSDFSAQYLQKMMAEQSSPIEFTLNPYDYVDSLCP 338
>gb|KJB43539.1| hypothetical protein B456_007G205200 [Gossypium raimondii]
Length = 653
Score = 211 bits (538), Expect = 3e-59
Identities = 134/310 (43%), Positives = 169/310 (54%), Gaps = 42/310 (13%)
Frame = -3
Query: 975 MDLDEL--LDGPSKGPNRPARFAPKGSKFKPR------PKAEPSQSLPLSASDSMESLPI 820
MDLD+L LDG S+ R +FAPK SKF P+ PK EPS S + +S P
Sbjct: 1 MDLDDLGELDGSSQANTRTTKFAPKSSKFAPKLKSTSKPKPEPS-----SKQEPQDSAPK 55
Query: 819 PK--------KEELGIKSDIKPEYV----------NDAIEMXXXXXXXXXXXXXXXLMXX 694
P+ K++ + D+KP V N A++M
Sbjct: 56 PQPPPVEAVSKKKENDEEDVKPPMVAEPKAEQSISNGAVKMEIDEETKEDEILTEANREE 115
Query: 693 XXXXXXXXXXXXXXXEIDVYFTPFVDPKTRLYVLQYPLRPLWRPYELDESCEEVRVKPTS 514
IDV+FTP +D +LYVLQYPLRP WRPYELDE C+EVRVKP S
Sbjct: 116 DQGEEEDMVVRE----IDVFFTPSIDADAQLYVLQYPLRPCWRPYELDERCKEVRVKPDS 171
Query: 513 AEVEIDLAVDVDSKNYDSGADPRVQMKKQILTALWKPPHISGFAVGVLTGNKLYLNPIHT 334
EVEID++VDVDS NYDS + +++M KQ L++ W PP SG+AVGVL G+KL+LNPIH
Sbjct: 172 WEVEIDMSVDVDSNNYDSESANKLKMTKQTLSSSWLPPRPSGYAVGVLMGDKLHLNPIHA 231
Query: 333 VVQLRPSVQHLESRESKRKTVGSSNVNDTVKSEEPQEGKPSGSSKKPD------------ 190
VVQLRPS+ HL+S SKRK ++ TVK EP +GK +G S K +
Sbjct: 232 VVQLRPSLAHLKSGVSKRKDTVAAEAEVTVK-VEPNDGKAAGPSAKQNQKVQSSTEQKAE 290
Query: 189 ----WVPLKY 172
WVPLKY
Sbjct: 291 DKECWVPLKY 300
Score = 68.9 bits (167), Expect = 5e-09
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = -2
Query: 181 SQIQQTKDSEEEWVPLKYHSTGSDLTARYLQKMKAQEGSQISFSMSSYDHLNSLCP 14
S +Q + +E WVPLKYHS+ SD +A+YLQKM A++ S I F+++ YD+++SLCP
Sbjct: 283 SSTEQKAEDKECWVPLKYHSSKSDFSAQYLQKMMAEQSSPIEFTLNPYDYVDSLCP 338