BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00005337
         (2307 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009104375.1| putative polymerase [Cassava Ivorian bacilli...   995   0.0  
ref|YP_006576519.1| replication protein 2a [Amazon lily mild mot...   991   0.0  
dbj|BBA22645.1| RNA-dependent RNA polymerase [Pelargonium zonate...   635   0.0  
gb|AHG25372.3| replicase [Pelargonium zonate spot virus]              635   0.0  
dbj|BBA22646.1| RNA-dependent RNA polymerase [Pelargonium zonate...   635   0.0  
ref|NP_619771.1| putative 2a protein [Pelargonium zonate spot vi...   634   0.0  
gb|AFU72537.1| protein 2a [Pelargonium zonate spot virus]             634   0.0  
emb|CAA41362.1| 2a protein [Brome mosaic virus]                       476   e-153
gb|ABF83486.1| 2a protein [Brome mosaic virus]                        476   e-153
dbj|BAJ41521.1| 2a protein [Brome mosaic virus]                       475   e-153
gb|AOH95428.1| 2a protein [Brome mosaic virus]                        474   e-152
gb|ADW09018.1| polymerase 2a [Brome mosaic virus]                     474   e-152
ref|NP_041197.1| RNA-dependent RNA polymerase [Brome mosaic viru...   473   e-152
ref|NP_613275.1| 2a protein [Cowpea chlorotic mottle virus] >gi|...   468   e-150
gb|AEI54613.1| 2a protein [Cowpea chlorotic mottle virus]             467   e-150
gb|AEI54609.1| 2a protein [Cowpea chlorotic mottle virus]             467   e-150
gb|AHA10985.1| 2a protein [Tomato aspermy virus]                      467   e-149
ref|NP_620761.1| 2a protein [Tomato aspermy virus] >gi|137276|sp...   467   e-149
gb|AOO95040.1| 2a protein [Tomato aspermy virus]                      465   e-149
gb|AAN37632.1| 2a protein [Cowpea chlorotic mottle virus]             461   e-148

>ref|YP_009104375.1| putative polymerase [Cassava Ivorian bacilliform virus]
 gb|AHJ89006.1| putative polymerase [Cassava Ivorian bacilliform virus]
          Length = 680

 Score =  995 bits (2573), Expect = 0.0
 Identities = 506/711 (71%), Positives = 568/711 (79%), Gaps = 10/711 (1%)
 Frame = +2

Query: 44   MDLFMMFNSGLLNANCESLIRYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLV 223
            MD+F +FN G L+A+   + R+VKLGF  + FDQ+ +   +EM+E+LS +L VSVDRLLV
Sbjct: 1    MDVFALFNGGFLSADNVDIFRFVKLGFRPEDFDQSDFSTKVEMAEILSPELGVSVDRLLV 60

Query: 224  ALFNGTDLADLEPDLEVCHEGLG-FESAHTVDCASMTDYLT--------TIEVTFPVRPD 376
             L NG DLAD+EP+ E+  E LG F S + V   S  D  T        T+E     + +
Sbjct: 61   GLINGEDLADIEPE-EITEESLGEFVSDNVV---SFDDLFTRFSSVSESTVETELSAKAE 116

Query: 377  MDSSQTEPLVLQIXXXXXXXXXXXXXXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHF 556
            +  S     V+                       +LES   LV  E   RLMET YG HF
Sbjct: 117  VSVSDGLSSVV-----------------------NLES---LV--EGSDRLMETGYGDHF 148

Query: 557  TLVQEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILP 736
            TLVQEEF+EE P A++N+A   P+ QI  CD+E PIP+  GRSDRV LEKLQ TVD+ILP
Sbjct: 149  TLVQEEFVEEIPMASLNIAPVVPLEQIFSCDIEQPIPLTKGRSDRVCLEKLQATVDSILP 208

Query: 737  THARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQK 916
            TH+RFDDTFHQAFVEN DI+LDF+RI+LKQY GDWY+DPD FY+P L SGGCARR+G+QK
Sbjct: 209  THSRFDDTFHQAFVENSDINLDFERIKLKQYTGDWYRDPDRFYEPALKSGGCARRVGTQK 268

Query: 917  EALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWAD 1096
            EALIAIRKRNADVPELAGSV+ID+ AKW AD F K++V ++ PL QVM+RM+AY  KW D
Sbjct: 269  EALIAIRKRNADVPELAGSVDIDKTAKWVADVFFKSYVSSLKPLEQVMSRMKAYCDKWKD 328

Query: 1097 RVDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTAL 1276
            RVDPL VL  TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDK+ C+NFSPWFTAL
Sbjct: 329  RVDPLAVLSGTNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKITCANFSPWFTAL 388

Query: 1277 FDGFQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRL 1456
            FDGFQKSL  RVRIPSGPISTLEM YGFKNKYYVEIDLSKFDKSQGELHLEFQRL+LLRL
Sbjct: 389  FDGFQKSLIDRVRIPSGPISTLEMNYGFKNKYYVEIDLSKFDKSQGELHLEFQRLLLLRL 448

Query: 1457 GLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCS 1636
            GLPAHLVNWWCELH++S++SDPNAGVAF CAYQRRTGDAFTYFGNTLVTMAEFACCFDCS
Sbjct: 449  GLPAHLVNWWCELHIKSFISDPNAGVAFPCAYQRRTGDAFTYFGNTLVTMAEFACCFDCS 508

Query: 1637 QFECMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFS 1816
            QFE MLFSGDDSLAVSNNPI GDTDLF SLFNMESK M +PVPYICSKFLIEDSFG SFS
Sbjct: 509  QFEIMLFSGDDSLAVSNNPIAGDTDLFTSLFNMESKSMEDPVPYICSKFLIEDSFGRSFS 568

Query: 1817 VPDPIREFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNK 1996
            VPDPIREFQRLGKKKI +Q + D LFEQYQGFRDRMKYLRH+DD MIDQLKVYFDMKY K
Sbjct: 569  VPDPIREFQRLGKKKILIQPNCDPLFEQYQGFRDRMKYLRHMDDFMIDQLKVYFDMKYKK 628

Query: 1997 GKDCIDDFLGGCIYYADNFKHFCELYNT-HAVEVRALVTLVDKGSLRLPSR 2146
            GKDCIDDFLGGCIYYADNF+HF EL+ T  A+EV+ALV LVDKG L LPSR
Sbjct: 629  GKDCIDDFLGGCIYYADNFQHFKELFFTPQAIEVKALVNLVDKGCLGLPSR 679


>ref|YP_006576519.1| replication protein 2a [Amazon lily mild mottle virus]
 dbj|BAM34544.1| replication protein 2a [Amazon lily mild mottle virus]
          Length = 657

 Score =  991 bits (2561), Expect = 0.0
 Identities = 492/650 (75%), Positives = 552/650 (84%), Gaps = 4/650 (0%)
 Frame = +2

Query: 212  RLLVALFNGTDLADLEPDL--EVCHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS 385
            +L+ ALF G D++D+ P++  EVC     F S H +D +S++ +   +++   ++ D+  
Sbjct: 14   KLVAALFRGEDISDISPEVVTEVCDGS--FVSYHCLD-SSVSPFDVCVDILDTIKNDV-- 68

Query: 386  SQTEPLVLQIXXXXXXXXXXXXXXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHFTLV 565
            S  +  V+                    L +D   +   V +E   RLME+SYG+HFTLV
Sbjct: 69   SVVDDCVVTTSDEEVTSERLERVKRTLDL-EDCVVNSCSVCTEGNERLMESSYGNHFTLV 127

Query: 566  QEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHA 745
             EEFIEECPAAAINVA+  P+ Q  ECDL  P+P+L GRSDRV+LEKLQ TVDAILPTHA
Sbjct: 128  GEEFIEECPAAAINVASVVPIDQQFECDLTAPLPVLKGRSDRVTLEKLQTTVDAILPTHA 187

Query: 746  RFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEAL 925
            RFDDTFHQAFVEN D+SLDF+RIRLKQYAGDWY+DPD FY+P L SGGC+RR+GSQKEAL
Sbjct: 188  RFDDTFHQAFVENADVSLDFERIRLKQYAGDWYRDPDNFYEPVLKSGGCSRRVGSQKEAL 247

Query: 926  IAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVD 1105
            IAIRKRNADVPELAGSVNID+VA+WAADNFMK+FVVNV+PLVQVM++M+AYM KW+DRVD
Sbjct: 248  IAIRKRNADVPELAGSVNIDQVAEWAADNFMKSFVVNVSPLVQVMSKMKAYMEKWSDRVD 307

Query: 1106 PLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDG 1285
            PL VLGETNLQRYQHMIKTDVKP+  DGMNLERA+PATITFHDKMVCSNFSPWFTALFDG
Sbjct: 308  PLMVLGETNLQRYQHMIKTDVKPITNDGMNLERAIPATITFHDKMVCSNFSPWFTALFDG 367

Query: 1286 FQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLP 1465
             QKSLNSRVRIPSGPISTLEM YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLP
Sbjct: 368  LQKSLNSRVRIPSGPISTLEMHYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLP 427

Query: 1466 AHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFE 1645
            AHLVNWWCELH+RS++SDP AGVAFQCAYQRRTGDAFT+FGNTLVTMAEFACCFDCSQFE
Sbjct: 428  AHLVNWWCELHIRSFISDPTAGVAFQCAYQRRTGDAFTFFGNTLVTMAEFACCFDCSQFE 487

Query: 1646 CMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPD 1825
             MLF+GDDSLAVSN+PITGDTDLF SLFNMESK MANPVPYICSKFLIED FGNSFSVPD
Sbjct: 488  MMLFAGDDSLAVSNSPITGDTDLFTSLFNMESKSMANPVPYICSKFLIEDCFGNSFSVPD 547

Query: 1826 PIREFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKD 2005
            PIREFQRLGKKKIQ+Q   DALFEQYQGFRDRMKYLRHLDD MIDQLKVYFD+KYNKGKD
Sbjct: 548  PIREFQRLGKKKIQIQPRADALFEQYQGFRDRMKYLRHLDDFMIDQLKVYFDIKYNKGKD 607

Query: 2006 CIDDFLGGCIYYADNFKHFCELY--NTHAVEVRALVTLVDKGSLRLPSRI 2149
            CIDDFLGGCIYYADNFKHFCEL+  ++HA+EV ALV  VD   L +PSR+
Sbjct: 608  CIDDFLGGCIYYADNFKHFCELFVNHSHAIEVGALVNFVDDKPLGIPSRL 657


>dbj|BBA22645.1| RNA-dependent RNA polymerase [Pelargonium zonate spot virus]
          Length = 687

 Score =  635 bits (1639), Expect = 0.0
 Identities = 333/685 (48%), Positives = 455/685 (66%), Gaps = 6/685 (0%)
 Frame = +2

Query: 104  RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLADLEPDLEVCHE 283
            ++  LG   + +D+  W++ ++  +    Q + S D  LV L+N  +L   + D      
Sbjct: 21   KFKALGLNTEDYDEQRWEMLVKCVDSGLMQFSCSRDEALVLLWNEEELPKDDDDEVPYEV 80

Query: 284  GLGFESAHTVDCASMTDYL---TTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXXX 451
                  A       ++++L   T++     V  D  + S+T   VL I            
Sbjct: 81   PCWTPDAEATLIDDVSEWLVGKTSVRDAAMVCSDYGAVSETPVEVLSIE----------- 129

Query: 452  XXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVM 631
                  L +D E D     ++  +     S+  +FT+V+EEF+EE P  ++N     PV 
Sbjct: 130  ------LEEDSEED---TIADVYLDARRKSFRDYFTIVEEEFVEEDPLISLNDGNVCPVR 180

Query: 632  QITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFD 808
             +    L+ P+ +  GR  DRV+LE LQ  ++  LP+HA FDDT+HQ FVE   + +DFD
Sbjct: 181  TLEVTSLKKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDFD 240

Query: 809  RIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDE 988
             IRL+Q      +D D +YQP L +G  +RRIG+QKEAL+AIRKRNADVPELA SV+++ 
Sbjct: 241  NIRLRQSEVFCDRDLDKYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVER 300

Query: 989  VAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDV 1168
            +++  A  F+ ++V ++ P+V VM +M+AY  KW D++DP+F+L E NLQRY+HMIKTDV
Sbjct: 301  LSELVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTDV 360

Query: 1169 KPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM 1348
            KP VA  M++ERA+PATITFH K +C+ FSPWFTALFD FQKSL+ RV IPSGPIST+EM
Sbjct: 361  KPTVAHSMHVERAIPATITFHGKSICAGFSPWFTALFDEFQKSLDERVVIPSGPISTIEM 420

Query: 1349 KYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNA 1528
             +  +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLP +L NWWC+ H +S++SDP A
Sbjct: 421  DFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPTYLANWWCDFHYKSFISDPRA 480

Query: 1529 GVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDT 1708
             V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D  QFE MLF+GDDSLA+S++PI G +
Sbjct: 481  KVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGCS 540

Query: 1709 DLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDA 1888
            D F SLFNME+K+M   VPYICSKFL+ D  G  FS PDPIREFQRLGKKKI    + DA
Sbjct: 541  DYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDDA 599

Query: 1889 LFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCE 2068
            LFEQY GF+DRM ++R+  +  I QLKV+F++KY +  + I+D++G C++Y+DNFK+F  
Sbjct: 600  LFEQYVGFKDRMSHMRYFSEYEIQQLKVFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKT 659

Query: 2069 LY-NTHAVEVRALVTLVDKGSLRLP 2140
            L+  T+A  V AL   V     RLP
Sbjct: 660  LFTKTNAPLVAALNKRVKDKPFRLP 684


>gb|AHG25372.3| replicase [Pelargonium zonate spot virus]
          Length = 687

 Score =  635 bits (1639), Expect = 0.0
 Identities = 334/685 (48%), Positives = 453/685 (66%), Gaps = 6/685 (0%)
 Frame = +2

Query: 104  RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLA---DLEPDLEV 274
            ++  LG   + +D+  W++ ++  +    Q + S D  LV L+N  +L    D E   EV
Sbjct: 21   KFKALGLNTEDYDEQRWELLVKCVDSGLMQFSCSRDEALVLLWNEEELPRDDDDEVPYEV 80

Query: 275  CHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXXX 451
                   E+    D +      T++        D  + S+T   VL +            
Sbjct: 81   PCWAPDTEATLIDDVSEWLVGKTSVRDAVTACSDYVAVSETPVEVLSVE----------- 129

Query: 452  XXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVM 631
                  L +D E D     ++  +     S+  +FT+V+EEF+EE P  ++N     PV 
Sbjct: 130  ------LEEDSEED---TIADVYLDARRKSFRDYFTIVEEEFVEEDPLISLNDGNVCPVR 180

Query: 632  QITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFD 808
                  L+ P+ +  GR  DRV+LE LQ  ++  LP+HA FDDT+HQ FVE   + +DFD
Sbjct: 181  TFEVTSLKKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDFD 240

Query: 809  RIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDE 988
             IRL+Q      +D D +YQP L +G  +RRIG+QKEAL+AIRKRNADVPELA SV+++ 
Sbjct: 241  NIRLRQSEVFCDRDLDKYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVER 300

Query: 989  VAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDV 1168
            +++  A  F+ ++V ++ P+V VM +M+AY  KW D++DP+F+L E NLQRY+HMIKTDV
Sbjct: 301  LSESVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTDV 360

Query: 1169 KPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM 1348
            KP VA  M++ERA+PATITFH K +C+ FSPWFTALFD FQKSL+ RV IPSGPIST+EM
Sbjct: 361  KPTVAHSMHVERAIPATITFHGKSICAGFSPWFTALFDEFQKSLDERVVIPSGPISTIEM 420

Query: 1349 KYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNA 1528
             +  +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLP HL NWWC+ H +S++SDP A
Sbjct: 421  DFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPTHLANWWCDFHYKSFISDPRA 480

Query: 1529 GVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDT 1708
             V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D  QFE MLF+GDDSLA+S++PI G +
Sbjct: 481  KVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGCS 540

Query: 1709 DLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDA 1888
            D F SLFNME+K+M   VPYICSKFL+ D  G  FS PDPIREFQRLGKKKI    + DA
Sbjct: 541  DYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDDA 599

Query: 1889 LFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCE 2068
            LFEQY GF+DRM ++R+  +  I QLK++F++KY +  + I+D++G C++Y+DNFK+F  
Sbjct: 600  LFEQYVGFKDRMSHMRNFSEHEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKT 659

Query: 2069 LY-NTHAVEVRALVTLVDKGSLRLP 2140
            L+  T+A  V AL   V     RLP
Sbjct: 660  LFTKTNAPLVAALNKRVKDKPFRLP 684


>dbj|BBA22646.1| RNA-dependent RNA polymerase [Pelargonium zonate spot virus]
          Length = 687

 Score =  635 bits (1637), Expect = 0.0
 Identities = 334/685 (48%), Positives = 454/685 (66%), Gaps = 6/685 (0%)
 Frame = +2

Query: 104  RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLA---DLEPDLEV 274
            ++  LG   + +D+  W++ ++  +    Q + S D  LV L+N  +L    D E   EV
Sbjct: 21   KFKALGLNTEDYDEQRWEMLVKCVDSGLMQFSCSRDEALVLLWNEEELPKDDDDEVPYEV 80

Query: 275  CHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXXX 451
                   E+    D +      T++     V  D  + S+T   VL +            
Sbjct: 81   PCWAPDAEATLIDDVSEWLVGKTSVLDAAMVCSDYGAVSETPVEVLSVE----------- 129

Query: 452  XXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVM 631
                  L +D E D     ++  +     S+  +FT+V+EEF+EE P  ++N     PV 
Sbjct: 130  ------LEEDSEED---TIADVYLDARRKSFRDYFTIVEEEFVEEDPLISLNDGNVCPVR 180

Query: 632  QITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFD 808
             +    L+ P+ +  GR  DRV+LE LQ  ++  LP+HA FDDT+HQ FVE   +  DFD
Sbjct: 181  TLEVTSLKKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDXDFD 240

Query: 809  RIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDE 988
             IRL+Q      +D D +YQP L +G  +RRIG+QKEAL+AIRKRNADVPELA SV+++ 
Sbjct: 241  NIRLRQSEVFCDRDLDKYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVER 300

Query: 989  VAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDV 1168
            +++  A  F+ ++V ++ P+V VM +M+AY  KW D++DP+F+L E NLQRY+HMIKTDV
Sbjct: 301  LSESVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTDV 360

Query: 1169 KPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM 1348
            KP VA  M++ERA+PATITFH K +C+ FSPWFTALFD FQKSL+ RV IPSGPIST+EM
Sbjct: 361  KPTVAHSMHVERAIPATITFHGKSICAGFSPWFTALFDEFQKSLDERVVIPSGPISTIEM 420

Query: 1349 KYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNA 1528
             +  +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLP HL NWWC+ H +S++SDP A
Sbjct: 421  DFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPTHLANWWCDFHYKSFISDPRA 480

Query: 1529 GVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDT 1708
             V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D  QFE MLF+GDDSLA+S++PI G +
Sbjct: 481  KVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGCS 540

Query: 1709 DLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDA 1888
            D F SLFNME+K+M   VPYICSKFL+ D  G  FS PDPIREFQRLGKKKI    + DA
Sbjct: 541  DYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDDA 599

Query: 1889 LFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCE 2068
            LFEQY GF+DRM ++R+  +  I QLK++F++KY +  + I+D++G C++Y+DNFK+F  
Sbjct: 600  LFEQYVGFKDRMSHMRNFSEYEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKT 659

Query: 2069 LY-NTHAVEVRALVTLVDKGSLRLP 2140
            L+  T+A  + AL   V     RLP
Sbjct: 660  LFTKTNAPLIAALNKRVKDKPFRLP 684


>ref|NP_619771.1| putative 2a protein [Pelargonium zonate spot virus]
 sp|Q9DUT2.1|RDRP_PZSVT RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a
 emb|CAC08527.1| putative 2a protein [Pelargonium zonate spot virus]
          Length = 687

 Score =  634 bits (1635), Expect = 0.0
 Identities = 339/686 (49%), Positives = 460/686 (67%), Gaps = 7/686 (1%)
 Frame = +2

Query: 104  RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLADLEPDLEVCHE 283
            ++  LG   + +D+  W++ ++  +    Q + S D  LV L+N  +L   + D EV +E
Sbjct: 21   KFRALGLNTEDYDEQRWEMLVKCVDSGLMQFSCSRDEALVLLWNEEELPKDDDD-EVPYE 79

Query: 284  GLGF--ESAHTV--DCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXX 448
               +  ++  TV  D +      T++  T  V  D D+ S+T   VL +           
Sbjct: 80   VPCWTPDTDATVIDDVSEWLAEKTSVRDTVVVCSDYDAVSETPVEVLSVE---------- 129

Query: 449  XXXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPV 628
                   L +D E D     ++  +     S+  +FT+V+EEF+EE P  ++N     PV
Sbjct: 130  -------LEEDSEED---TIADVCLDARRKSFRDYFTIVEEEFVEEDPLISLNDGNVCPV 179

Query: 629  MQITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDF 805
                   LE P+ +  GR  DRV+LE LQ  ++  LP+HA FDDT+HQ FVE   + +DF
Sbjct: 180  RTHEVTSLEKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDF 239

Query: 806  DRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNID 985
            D IRL+Q      +D D +YQP L +G  +RRIG+QKEAL+AIRKRNADVPELA SV+++
Sbjct: 240  DNIRLRQSEVFCDRDLDRYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVE 299

Query: 986  EVAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTD 1165
             +++  A  F+ ++V ++ P+V VM +M+AY  KW D++DP+F+L E NLQRY+HMIKTD
Sbjct: 300  RLSESVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTD 359

Query: 1166 VKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLE 1345
            VKP VA  M++ERA+PATITFH K +C+ FSP FTALFD FQKSL+ RV IPSGPIST+E
Sbjct: 360  VKPTVAHSMHVERAIPATITFHGKSICAGFSPSFTALFDEFQKSLDERVVIPSGPISTIE 419

Query: 1346 MKYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPN 1525
            M +  +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLPAHL NWWC+ H +S++SDP 
Sbjct: 420  MDFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPAHLANWWCDFHYKSFISDPR 479

Query: 1526 AGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGD 1705
            A V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D  QFE MLF+GDDSLA+S++PI G 
Sbjct: 480  AKVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGC 539

Query: 1706 TDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHD 1885
            +D F SLFNME+K+M   VPYICSKFL+ D  G  FS PDPIREFQRLGKKKI    + D
Sbjct: 540  SDYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDD 598

Query: 1886 ALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFC 2065
            ALFEQY GF+DRM ++R+  +  I QLK++F++KY +  + I+D++G C++Y+DNFK+F 
Sbjct: 599  ALFEQYVGFKDRMSHMRNFSEYEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFK 658

Query: 2066 ELY-NTHAVEVRALVTLVDKGSLRLP 2140
             L+  T A  V AL   V     RLP
Sbjct: 659  TLFTKTCAPLVAALNKRVKDKPFRLP 684


>gb|AFU72537.1| protein 2a [Pelargonium zonate spot virus]
          Length = 687

 Score =  634 bits (1634), Expect = 0.0
 Identities = 333/685 (48%), Positives = 454/685 (66%), Gaps = 6/685 (0%)
 Frame = +2

Query: 104  RYVKLGFEADTFDQTSWDINLEMSEVLSEQLNVSVDRLLVALFNGTDLA---DLEPDLEV 274
            ++  LG   + +D+  W++ ++  +    Q + S D  LV L+N  +L    D E   EV
Sbjct: 21   KFKALGLNTEDYDEQRWEMLVKCVDSGLMQFSCSRDEALVLLWNEEELPKDYDDEVPYEV 80

Query: 275  CHEGLGFESAHTVDCASMTDYLTTIEVTFPVRPDMDS-SQTEPLVLQIXXXXXXXXXXXX 451
                   E+    D +      T++     V  D  + S+T   VL +            
Sbjct: 81   PCWTPDTEATLIDDVSEWLMGKTSVRDAATVCSDYCAVSETPVEVLSVE----------- 129

Query: 452  XXXXXXLIKDLESDFPLVHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVM 631
                  L +D E D     ++  +     S+  +FT+V+EE +EE P  ++N     P+ 
Sbjct: 130  ------LEEDSEED---TIADVYLDARRKSFRDYFTIVEEELVEEDPLISLNDGNVCPIR 180

Query: 632  QITECDLELPIPILTGRS-DRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFD 808
             +    L+ P+ +  GR  DRV+LE LQ  ++  LP+HA FDDT+HQ FVE   + +DFD
Sbjct: 181  TLEVTSLKKPVMLDVGRRCDRVNLESLQGAINMNLPSHAYFDDTWHQYFVEGSKLDVDFD 240

Query: 809  RIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDE 988
             IRL+Q      +D D +YQP L +G  +RRIG+QKEAL+AIRKRNADVPELA SV+++ 
Sbjct: 241  NIRLRQSEVFCDRDLDRYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELADSVDVER 300

Query: 989  VAKWAADNFMKAFVVNVNPLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDV 1168
            +++  A  F+ ++V ++ P+V VM +M+AY  KW D++DP+F+L E NLQRY+HMIKTDV
Sbjct: 301  LSELVAKKFLSSYVCDLKPVVGVMEKMRAYHQKWGDKIDPMFLLKEHNLQRYEHMIKTDV 360

Query: 1169 KPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM 1348
            KP VA  M++ERA+PATITFH K +C+ FSPWFTALFD FQKSL+ RV IPSGPIST+EM
Sbjct: 361  KPTVAHSMHVERAIPATITFHGKSICAGFSPWFTALFDEFQKSLDERVVIPSGPISTIEM 420

Query: 1349 KYGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNA 1528
             +  +NKYY+E+DLSKFDKSQG LHLEFQR IL ++GLP HL NWWC+ H +S++SDP A
Sbjct: 421  DFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPTHLANWWCDFHYKSFISDPRA 480

Query: 1529 GVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDT 1708
             V+F C++QRRTGDAFT+FGNTLVTMA F+ C+D  QFE MLF+GDDSLA+S++PI G +
Sbjct: 481  KVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSPIVGCS 540

Query: 1709 DLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDA 1888
            D F SLFNME+K+M   VPYICSKFL+ D  G  FS PDPIREFQRLGKKKI    + DA
Sbjct: 541  DYFVSLFNMEAKIMDPGVPYICSKFLVSDELGRCFSAPDPIREFQRLGKKKISAD-NDDA 599

Query: 1889 LFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCE 2068
            LFEQY GF+DRM ++R+  +  I QLK++F++KY +  + I+D++G C++Y+DNFK+F  
Sbjct: 600  LFEQYVGFKDRMSHMRNFSEYEIQQLKIFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKT 659

Query: 2069 LY-NTHAVEVRALVTLVDKGSLRLP 2140
            L+  T+A  V AL   V     RLP
Sbjct: 660  LFTKTNAPLVAALNKRVKDKPFRLP 684


>emb|CAA41362.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  476 bits (1226), Expect = e-153
 Identities = 275/571 (48%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
 Frame = +2

Query: 476  KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 625
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 626  VMQI------TECDLELPIPILTGRS--DRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 781
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYVERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 782  NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 961
            NGD S+DFDRIRLKQ   DWYKDPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYKDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 962  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1117
            +  ++N+ E AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 1118 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1297
              ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 1298 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 1474
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 1475 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 1654
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 1655 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 1834
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+PDP+R
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPMR 614

Query: 1835 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 2014
            E QRL K+KI   +    L   +  F DRMK++  LD+ MI  L  +  +KY K K  I 
Sbjct: 615  EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672

Query: 2015 D----FLGGCIYYADNFKHFCELYNTHAVEV 2095
            +     L     Y++NF  F + Y T  + V
Sbjct: 673  EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703


>gb|ABF83486.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  476 bits (1224), Expect = e-153
 Identities = 274/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
 Frame = +2

Query: 476  KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 625
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 626  VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 781
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 782  NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 961
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 962  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1117
            +  ++N+ E AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 1118 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1297
              ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 1298 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 1474
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 1475 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 1654
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 1655 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 1834
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+PDP+R
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNWVSIPDPMR 614

Query: 1835 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 2014
            E QRL K+KI   +    L   +  F DRMK++  LD+ MI  L  +  +KY K K  I 
Sbjct: 615  EIQRLAKRKI--LREEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672

Query: 2015 D----FLGGCIYYADNFKHFCELYNTHAVEV 2095
            +     L     Y++NF  F + Y T  + V
Sbjct: 673  EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703


>dbj|BAJ41521.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  475 bits (1223), Expect = e-153
 Identities = 274/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
 Frame = +2

Query: 476  KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 625
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 626  VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 781
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 782  NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 961
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 962  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1117
            +  ++N+ E AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 1118 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1297
              ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 1298 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 1474
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 1475 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 1654
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 1655 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 1834
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+PDP+R
Sbjct: 555  FSGDDSLIISKVRPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPMR 614

Query: 1835 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 2014
            E QRL K+KI   +    L   +  F DRMK++  LD+ MI  L  +  +KY K K  I 
Sbjct: 615  EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672

Query: 2015 D----FLGGCIYYADNFKHFCELYNTHAVEV 2095
            +     L     Y++NF  F + Y T  + V
Sbjct: 673  EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703


>gb|AOH95428.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  474 bits (1220), Expect = e-152
 Identities = 273/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
 Frame = +2

Query: 476  KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 625
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASESSNCEIEEVRVTGVTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 626  VMQI------TECDLELPIPILTGRS--DRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 781
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYLERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 782  NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 961
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 962  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1117
            +  ++N+ + AK  A+ F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKDTAKAIAERFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 1118 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1297
              ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 1298 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 1474
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 1475 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 1654
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 1655 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 1834
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+PDP+R
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPLR 614

Query: 1835 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 2014
            E QRL K+KI   +    L   +  F DRMK++  LD+ MI  L  +  +KY K K  I 
Sbjct: 615  EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672

Query: 2015 D----FLGGCIYYADNFKHFCELYNTHAVEV 2095
            +     L     Y++NF  F + Y T  + V
Sbjct: 673  EEVRSALAAFSLYSENFLRFSDCYCTEGIRV 703


>gb|ADW09018.1| polymerase 2a [Brome mosaic virus]
          Length = 822

 Score =  474 bits (1219), Expect = e-152
 Identities = 273/571 (47%), Positives = 348/571 (60%), Gaps = 31/571 (5%)
 Frame = +2

Query: 476  KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 625
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 626  VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 781
            + +       T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IERRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 782  NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 961
            NGD S+DFDRIRLKQ   DWYKDPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYKDPDRYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 962  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1117
            +  ++N+ + AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKDTAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 1118 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1297
              ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 1298 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 1474
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 1475 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 1654
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 1655 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 1834
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+PDP+R
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIPDPLR 614

Query: 1835 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 2014
            E QRL ++KI   +    L   +  F DRMK++  LD+ MI  L  +  +KY K K  I 
Sbjct: 615  EIQRLARRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITMLCHFVYLKYGKEKPWIF 672

Query: 2015 D----FLGGCIYYADNFKHFCELYNTHAVEV 2095
            +     L     Y++NF  F + Y T  + V
Sbjct: 673  EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703


>ref|NP_041197.1| RNA-dependent RNA polymerase [Brome mosaic virus]
 sp|P03594.1|RDRP_BMV RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a
 emb|CAA25834.1| unnamed protein product [Brome mosaic virus]
          Length = 822

 Score =  473 bits (1218), Expect = e-152
 Identities = 274/571 (47%), Positives = 347/571 (60%), Gaps = 31/571 (5%)
 Frame = +2

Query: 476  KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 625
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 626  VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 781
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 782  NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 961
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 962  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 1117
            +  ++N+ + AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKDTAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 1118 LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 1297
              ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 1298 LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 1474
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 1475 VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 1654
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 1655 FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIR 1834
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  SVPDP+R
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSVPDPLR 614

Query: 1835 EFQRLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCID 2014
            E QRL K+KI   +    L   +  F DRMK++  LD+ MI  L  +  +KY K K  I 
Sbjct: 615  EIQRLAKRKI--LRDEQMLRAHFVSFCDRMKFINQLDEKMITTLCHFVYLKYGKEKPWIF 672

Query: 2015 D----FLGGCIYYADNFKHFCELYNTHAVEV 2095
            +     L     Y++NF  F + Y T  + V
Sbjct: 673  EEVRAALAAFSLYSENFLRFSDCYCTEGIRV 703


>ref|NP_613275.1| 2a protein [Cowpea chlorotic mottle virus]
 sp|P20179.1|RDRP_CCMV RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a
 gb|AAA46371.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  468 bits (1203), Expect = e-150
 Identities = 254/507 (50%), Positives = 330/507 (65%), Gaps = 11/507 (2%)
 Frame = +2

Query: 608  VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 787
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 788  DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 967
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 968  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1126
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 1127 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1306
             NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 1307 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 1483
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 1484 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 1663
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D +  +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSG 568

Query: 1664 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 1843
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVPDP+RE Q
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628

Query: 1844 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 2020
            RL K+KI   K  + L   ++ F DRMK+L  LD+ MI+ L  +  +KY K  D  +D  
Sbjct: 629  RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685

Query: 2021 --LGGCIYYADNFKHFCELYNTHAVEV 2095
              +    YY++NF  FCE Y T  V +
Sbjct: 686  VAIAAFGYYSENFLRFCECYATEGVNI 712


>gb|AEI54613.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  467 bits (1202), Expect = e-150
 Identities = 254/507 (50%), Positives = 329/507 (64%), Gaps = 11/507 (2%)
 Frame = +2

Query: 608  VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 787
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 788  DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 967
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 968  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1126
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 1127 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1306
             NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 1307 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 1483
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 1484 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 1663
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D    +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSG 568

Query: 1664 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 1843
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVPDP+RE Q
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628

Query: 1844 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 2020
            RL K+KI   K  + L   ++ F DRMK+L  LD+ MI+ L  +  +KY K  D  +D  
Sbjct: 629  RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685

Query: 2021 --LGGCIYYADNFKHFCELYNTHAVEV 2095
              +    YY++NF  FCE Y T  V +
Sbjct: 686  VAIAAFGYYSENFLRFCECYATEGVNI 712


>gb|AEI54609.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  467 bits (1202), Expect = e-150
 Identities = 254/507 (50%), Positives = 329/507 (64%), Gaps = 11/507 (2%)
 Frame = +2

Query: 608  VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 787
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 788  DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 967
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 968  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1126
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 1127 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1306
             NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 1307 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 1483
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 1484 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 1663
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D    +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSG 568

Query: 1664 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 1843
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVPDP+RE Q
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628

Query: 1844 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 2020
            RL K+KI   K  + L   ++ F DRMK+L  LD+ MI+ L  +  +KY K  D  +D  
Sbjct: 629  RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685

Query: 2021 --LGGCIYYADNFKHFCELYNTHAVEV 2095
              +    YY++NF  FCE Y T  V +
Sbjct: 686  VAIAAFGYYSENFLRFCECYATEGVNI 712


>gb|AHA10985.1| 2a protein [Tomato aspermy virus]
          Length = 828

 Score =  467 bits (1201), Expect = e-149
 Identities = 244/477 (51%), Positives = 318/477 (66%), Gaps = 7/477 (1%)
 Frame = +2

Query: 665  PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 844
            P LT  +DRV+++ LQ   D+ LPTH  +DDT+HQ F+EN D S+D DR+RLKQ      
Sbjct: 274  PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333

Query: 845  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1024
               +G  +P L +G   +RIG+ +E L AI+KRNADVPEL GSVN+  ++   A+ FM +
Sbjct: 334  VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393

Query: 1025 FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 1186
            F+    +  +  + +++   AYMSKW   +  D L  L   NLQ Y+HM+K+DVKP V D
Sbjct: 394  FMNGDKLCSSNFINIVSDFHAYMSKWQSILSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453

Query: 1187 GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 1363
             +N++R +PATITFH K + S FSP FTALF  FQ+ L  RV +P G IS+LE+K +   
Sbjct: 454  TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513

Query: 1364 NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 1543
            NK+ +EIDLSKFDKSQGELHL  Q  IL RLG P H+  WWC+ H  SY+ D  AGV+  
Sbjct: 514  NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573

Query: 1544 CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 1723
             ++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL  S     GD  LF S
Sbjct: 574  ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633

Query: 1724 LFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQY 1903
            LFNME+KVM   VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + +   +L   +
Sbjct: 634  LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHF 693

Query: 1904 QGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 2074
              F DR+K+L H++   + QL ++++MKY K  D I   LG    Y  NF  + ELY
Sbjct: 694  MSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKELY 750


>ref|NP_620761.1| 2a protein [Tomato aspermy virus]
 sp|P29035.1|RDRP_TAV RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a
 dbj|BAA01514.1| 2a protein [Tomato aspermy virus]
 emb|CAC86464.1| 2a protein [Tomato aspermy virus]
          Length = 828

 Score =  467 bits (1201), Expect = e-149
 Identities = 244/477 (51%), Positives = 318/477 (66%), Gaps = 7/477 (1%)
 Frame = +2

Query: 665  PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 844
            P LT  +DRV+++ LQ   D+ LPTH  +DDT+HQ F+EN D S+D DR+RLKQ      
Sbjct: 274  PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333

Query: 845  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1024
               +G  +P L +G   +RIG+ +E L AI+KRNADVPEL GSVN+  ++   A+ FM +
Sbjct: 334  VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393

Query: 1025 FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 1186
            F+    +  +  + +++   AYMSKW   +  D L  L   NLQ Y+HM+K+DVKP V D
Sbjct: 394  FMNGDKLCSSNFINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453

Query: 1187 GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 1363
             +N++R +PATITFH K + S FSP FTALF  FQ+ L  RV +P G IS+LE+K +   
Sbjct: 454  TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513

Query: 1364 NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 1543
            NK+ +EIDLSKFDKSQGELHL  Q  IL RLG P H+  WWC+ H  SY+ D  AGV+  
Sbjct: 514  NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573

Query: 1544 CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 1723
             ++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL  S     GD  LF S
Sbjct: 574  ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633

Query: 1724 LFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQY 1903
            LFNME+KVM   VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + +   +L   +
Sbjct: 634  LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHF 693

Query: 1904 QGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 2074
              F DR+K+L H++   + QL ++++MKY K  D I   LG    Y  NF  + ELY
Sbjct: 694  MSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKELY 750


>gb|AOO95040.1| 2a protein [Tomato aspermy virus]
          Length = 828

 Score =  465 bits (1196), Expect = e-149
 Identities = 243/477 (50%), Positives = 317/477 (66%), Gaps = 7/477 (1%)
 Frame = +2

Query: 665  PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 844
            P LT  +DRV+++ LQ   D+ LPTH  +DDT+HQ F+EN D S+D DR+RLKQ      
Sbjct: 274  PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333

Query: 845  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 1024
               +G  +P L +G   +RIG+ +E L AI+KRNADVPEL GSVN+  ++   A+ FM +
Sbjct: 334  VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393

Query: 1025 FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 1186
            F+    +  +  + +++   AYMSKW   +  D L  L   NLQ Y+HM+K+DVKP V D
Sbjct: 394  FMNGDKLCSSNFINIVSDFHAYMSKWQSILSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453

Query: 1187 GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 1363
             +N++R +PATITFH K + S FSP FTALF  FQ+ L  R  +P G IS+LE+K +   
Sbjct: 454  TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRFILPVGKISSLEIKDFSVL 513

Query: 1364 NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 1543
            NK+ +EIDLSKFDKSQGELHL  Q  IL RLG P H+  WWC+ H  SY+ D  AGV+  
Sbjct: 514  NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573

Query: 1544 CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 1723
             ++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL  S     GD  LF S
Sbjct: 574  ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633

Query: 1724 LFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQRLGKKKIQVQKHHDALFEQY 1903
            LFNME+KVM   VPYICSKFL+ D FGN+FSVPDP+RE QRLG KKI + +   +L   +
Sbjct: 634  LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVPDPLREIQRLGSKKIPLDEDDRSLHAHF 693

Query: 1904 QGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDFLGGCIYYADNFKHFCELY 2074
              F DR+K+L H++   + QL ++++MKY K  D I   LG    Y  NF  + ELY
Sbjct: 694  MSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKELY 750


>gb|AAN37632.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  461 bits (1187), Expect = e-148
 Identities = 252/507 (49%), Positives = 328/507 (64%), Gaps = 11/507 (2%)
 Frame = +2

Query: 608  VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 787
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 788  DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 967
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 968  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 1126
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 1127 TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 1306
             NLQRYQ MIK+D+KP V+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQDMIKSDIKPGVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 1307 RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 1483
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 1484 WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 1663
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D +  +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSG 568

Query: 1664 DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVPDPIREFQ 1843
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVPDP+RE Q
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQ 628

Query: 1844 RLGKKKIQVQKHHDALFEQYQGFRDRMKYLRHLDDGMIDQLKVYFDMKYNKGKDCIDDF- 2020
            RL K+KI   K  + L   ++ F DRMK+L  LD+ MI+ L  +  +KY K  D  +D  
Sbjct: 629  RLAKRKI--IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKK-PDVENDVR 685

Query: 2021 --LGGCIYYADNFKHFCELYNTHAVEV 2095
              +    YY++NF  FCE Y T  V +
Sbjct: 686  VAIAAFGYYSENFLRFCECYATEGVNI 712