BLASTX nr result
ID: Rehmannia32_contig00004897
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00004897
(768 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_003330957.1| photosystem II protein D2 [Parthenium argent... 184 1e-54
gb|APH08460.1| photosystem II protein D2, partial (chloroplast) ... 177 3e-53
gb|AVE14520.1| PsbD (chloroplast) [Angelica tsinlingensis] 184 1e-52
ref|YP_009341772.1| photosystem II protein D2 (chloroplast) [Cas... 184 1e-52
gb|EOA21324.1| hypothetical protein CARUB_v10001685mg [Capsella ... 179 5e-52
ref|YP_009471538.1| PSII D2 protein (chloroplast) [Firmiana majo... 182 6e-52
ref|YP_009309000.1| PsbD (chloroplast) [Joinvillea ascendens] >g... 181 1e-51
dbj|BAE47589.1| photosystem II protein D2 (chloroplast) [Lactuca... 181 1e-51
gb|AVM10594.1| photosystem II protein D2 (chloroplast) [Epipacti... 179 3e-51
gb|AAS46043.1| photosystem II protein D2 (chloroplast) [Oryza sa... 178 1e-50
gb|AFU94436.1| PsbD, partial (chloroplast) [Byrsonima crassifolia] 173 2e-50
gb|ADD63025.1| photosystem II protein D2 (chloroplast) [Potamoph... 176 7e-50
gb|AFU94432.1| PsbD, partial (chloroplast) [Anthodiscus peruanus] 172 9e-50
ref|YP_009130834.1| photosystem II protein D2 (chloroplast) [Gos... 173 1e-49
gb|PLY62341.1| hypothetical protein LSAT_4X58161 [Lactuca sativa] 171 1e-49
ref|YP_009176000.1| photosystem II protein D2 (chloroplast) [Fic... 176 1e-49
gb|OTG34070.1| putative photosynthetic reaction centre, L/M [Hel... 170 2e-49
ref|YP_009446685.1| photosystem II protein D2 (chloroplast) [Ade... 173 2e-49
gb|PLY96950.1| hypothetical protein LSAT_4X102100 [Lactuca sativa] 171 2e-49
gb|ACU23885.1| unknown, partial [Glycine max] 173 4e-49
>ref|YP_003330957.1| photosystem II protein D2 [Parthenium argentatum]
gb|ACZ52706.1| photosystem II protein D2 (chloroplast) [Parthenium argentatum]
Length = 199
Score = 184 bits (466), Expect = 1e-54
Identities = 88/101 (87%), Positives = 89/101 (88%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>gb|APH08460.1| photosystem II protein D2, partial (chloroplast) [Rhynchostylis
retusa]
Length = 114
Score = 177 bits (449), Expect = 3e-53
Identities = 84/101 (83%), Positives = 87/101 (86%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIA G+F K+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIAFGRFIKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>gb|AVE14520.1| PsbD (chloroplast) [Angelica tsinlingensis]
Length = 359
Score = 184 bits (466), Expect = 1e-52
Identities = 88/101 (87%), Positives = 89/101 (88%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>ref|YP_009341772.1| photosystem II protein D2 (chloroplast) [Castanopsis concinna]
gb|ALN96514.1| photosystem II protein D2 (chloroplast) [Castanopsis concinna]
Length = 359
Score = 184 bits (466), Expect = 1e-52
Identities = 88/101 (87%), Positives = 89/101 (88%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>gb|EOA21324.1| hypothetical protein CARUB_v10001685mg [Capsella rubella]
Length = 274
Score = 179 bits (455), Expect = 5e-52
Identities = 86/101 (85%), Positives = 87/101 (86%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRI MTIALGKFTKDE DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRIAMTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>ref|YP_009471538.1| PSII D2 protein (chloroplast) [Firmiana major]
gb|AVH80359.1| PSII D2 protein (chloroplast) [Firmiana major]
Length = 359
Score = 182 bits (461), Expect = 6e-52
Identities = 87/101 (86%), Positives = 88/101 (87%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRI MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRIAMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>ref|YP_009309000.1| PsbD (chloroplast) [Joinvillea ascendens]
gb|AOS86742.1| PsbD (chloroplast) [Joinvillea ascendens]
Length = 359
Score = 181 bits (459), Expect = 1e-51
Identities = 86/101 (85%), Positives = 89/101 (88%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALG+FTK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGRFTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>dbj|BAE47589.1| photosystem II protein D2 (chloroplast) [Lactuca sativa]
Length = 359
Score = 181 bits (459), Expect = 1e-51
Identities = 87/101 (86%), Positives = 88/101 (87%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALGK TKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGKVTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>gb|AVM10594.1| photosystem II protein D2 (chloroplast) [Epipactis mairei]
Length = 310
Score = 179 bits (453), Expect = 3e-51
Identities = 86/103 (83%), Positives = 89/103 (86%)
Frame = +3
Query: 459 K*LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXX 638
K LNRRITMTI+LG+F K+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 2 KLLNRRITMTISLGRFIKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTG 61
Query: 639 XXXXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 62 TTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 104
>gb|AAS46043.1| photosystem II protein D2 (chloroplast) [Oryza sativa Indica Group]
gb|AAS46108.1| photosystem II protein D2 (chloroplast) [Oryza sativa Japonica
Group]
gb|AAS46171.1| photosystem II protein D2 (chloroplast) [Oryza sativa Japonica
Group]
gb|ADD62821.1| photosystem II protein D2 (chloroplast) [Oryza sativa Japonica
Group]
gb|ADD62889.1| photosystem II protein D2 (chloroplast) [Oryza meridionalis]
gb|ADD62957.1| photosystem II protein D2 (chloroplast) [Oryza australiensis]
gb|ADD63092.1| photosystem II protein D2 (chloroplast) [Microlaena stipoides]
Length = 359
Score = 178 bits (452), Expect = 1e-50
Identities = 85/101 (84%), Positives = 88/101 (87%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALG+ TK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGRVTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>gb|AFU94436.1| PsbD, partial (chloroplast) [Byrsonima crassifolia]
Length = 218
Score = 173 bits (439), Expect = 2e-50
Identities = 83/95 (87%), Positives = 83/95 (87%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
>gb|ADD63025.1| photosystem II protein D2 (chloroplast) [Potamophila parviflora]
Length = 359
Score = 176 bits (447), Expect = 7e-50
Identities = 84/101 (83%), Positives = 87/101 (86%)
Frame = +3
Query: 465 LNRRITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXX 644
+NRRITMTIALG+ K+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA
Sbjct: 1 MNRRITMTIALGRVAKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTT 60
Query: 645 XXXSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
SWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 FVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 101
>gb|AFU94432.1| PsbD, partial (chloroplast) [Anthodiscus peruanus]
Length = 216
Score = 172 bits (435), Expect = 9e-50
Identities = 82/95 (86%), Positives = 83/95 (87%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGKFTK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKFTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
>ref|YP_009130834.1| photosystem II protein D2 (chloroplast) [Gossypium turneri]
gb|AFH57572.1| photosystem II protein D2 (chloroplast) [Gossypium turneri]
Length = 276
Score = 173 bits (439), Expect = 1e-49
Identities = 83/95 (87%), Positives = 83/95 (87%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
>gb|PLY62341.1| hypothetical protein LSAT_4X58161 [Lactuca sativa]
Length = 194
Score = 171 bits (432), Expect = 1e-49
Identities = 82/95 (86%), Positives = 82/95 (86%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGK TKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKVTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
>ref|YP_009176000.1| photosystem II protein D2 (chloroplast) [Ficus racemosa]
gb|ALI30695.1| photosystem II protein D2 (chloroplast) [Ficus racemosa]
Length = 355
Score = 176 bits (445), Expect = 1e-49
Identities = 84/97 (86%), Positives = 85/97 (87%)
Frame = +3
Query: 477 ITMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXS 656
+TMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA S
Sbjct: 1 MTMTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTS 60
Query: 657 WYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
WYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 WYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 97
>gb|OTG34070.1| putative photosynthetic reaction centre, L/M [Helianthus annuus]
Length = 193
Score = 170 bits (431), Expect = 2e-49
Identities = 82/95 (86%), Positives = 82/95 (86%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLA SLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAQSLLLLWG 95
>ref|YP_009446685.1| photosystem II protein D2 (chloroplast) [Adenocalymma biternatum]
gb|ATY47997.1| photosystem II protein D2 (chloroplast) [Adenocalymma biternatum]
Length = 295
Score = 173 bits (439), Expect = 2e-49
Identities = 83/95 (87%), Positives = 83/95 (87%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
>gb|PLY96950.1| hypothetical protein LSAT_4X102100 [Lactuca sativa]
Length = 211
Score = 171 bits (432), Expect = 2e-49
Identities = 82/95 (86%), Positives = 82/95 (86%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGK TKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKVTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
>gb|ACU23885.1| unknown, partial [Glycine max]
Length = 323
Score = 173 bits (439), Expect = 4e-49
Identities = 83/95 (87%), Positives = 83/95 (87%)
Frame = +3
Query: 483 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAXXXXXXXXXXXXSWY 662
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA SWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 663 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 767
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95