BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00004080
         (882 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot...   501   e-168
ref|YP_009104374.1| putative replicase [Cassava Ivorian bacillif...   454   e-150
gb|AHG25371.2| replicase [Pelargonium zonate spot virus]              370   e-117
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]             369   e-117
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] >gi|8...   361   e-114
ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus] >g...   281   6e-84
gb|AAR89468.1| 1a protein [Peanut stunt virus]                        278   1e-82
emb|CAC86463.1| 1a protein [Tomato aspermy virus]                     274   3e-81
gb|AHA10984.1| 1a protein [Tomato aspermy virus]                      274   3e-81
emb|CAP19049.1| 1a protein [Peanut stunt virus]                       274   3e-81
ref|NP_620760.1| 1a protein [Tomato aspermy virus] >gi|137257|sp...   272   9e-81
dbj|BAF80085.1| 1a protein [Peanut stunt virus]                       272   1e-80
gb|AOO95042.1| 1a protein [Tomato aspermy virus]                      272   1e-80
gb|AFG28425.1| 1a protein [Peanut stunt virus]                        271   4e-80
gb|ADN83830.1| 1a protein [Peanut stunt virus]                        271   4e-80
gb|ACF34993.1| 1a protein [Peanut stunt virus]                        270   6e-80
gb|AMX23554.1| 1a protein [Cucumber mosaic virus]                     270   9e-80
ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] >gi|513...   269   1e-79
ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus] >...   268   1e-79
sp|P28726.1|1A_PSVJ RecName: Full=Replication protein 1a; Includ...   269   1e-79

>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
 dbj|BAM34543.1| replication protein 1a [Amazon lily mild mottle virus]
          Length = 945

 Score =  501 bits (1289), Expect = e-168
 Identities = 238/279 (85%), Positives = 256/279 (91%)
 Frame = +2

Query: 44  MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 223
           MAFSFNVRDLVDAEG+QAIGV+ALVDSLATQ+A DQIEYSKR+ +VFIRQQLSV EGEKI
Sbjct: 1   MAFSFNVRDLVDAEGAQAIGVRALVDSLATQIAHDQIEYSKRSNKVFIRQQLSVAEGEKI 60

Query: 224 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGEILDFGGSWLFHWKRGSQV 403
           RKRFGGAYEL+LTQEFTAPHSFAAALR CETLECLDFFP+GEILDFGGSWLFHWKRG  V
Sbjct: 61  RKRFGGAYELQLTQEFTAPHSFAAALRTCETLECLDFFPDGEILDFGGSWLFHWKRGKPV 120

Query: 404 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 583
           HSCCPILDARDAAR QERLVHMEK+VR+SS  Y +LPGPNFC  +AE+C VQCPYAI IH
Sbjct: 121 HSCCPILDARDAARQQERLVHMEKLVRKSSKTYADLPGPNFCDQRAEECSVQCPYAICIH 180

Query: 584 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDFRD 763
           GGYDMGFQTLC+AMHKHGCVMLRGTMMFD+EMLLY+ GFI DLNCVWS R   +AFDFRD
Sbjct: 181 GGYDMGFQTLCAAMHKHGCVMLRGTMMFDAEMLLYKDGFIPDLNCVWSIRGDKIAFDFRD 240

Query: 764 ESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 880
           ESTLSY HSFKNVKSFLTDQ+HVIGTTAYILERC I+ G
Sbjct: 241 ESTLSYCHSFKNVKSFLTDQAHVIGTTAYILERCVIDMG 279


>ref|YP_009104374.1| putative replicase [Cassava Ivorian bacilliform virus]
 gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform virus]
          Length = 943

 Score =  454 bits (1167), Expect = e-150
 Identities = 207/279 (74%), Positives = 248/279 (88%)
 Frame = +2

Query: 44  MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 223
           MAFSFNVRDLVDAEGSQA+GV+ALVDSLAT++A+DQIEY KR+++V++RQ L+VQEGEKI
Sbjct: 1   MAFSFNVRDLVDAEGSQALGVRALVDSLATKLAEDQIEYQKRSQKVYVRQMLTVQEGEKI 60

Query: 224 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGEILDFGGSWLFHWKRGSQV 403
           RKRFGGA++L LTQEF APHSFAAALR CETLECLDFFP+G++LDFGGSWLFHW+RG QV
Sbjct: 61  RKRFGGAFDLALTQEFVAPHSFAAALRTCETLECLDFFPQGQVLDFGGSWLFHWQRGHQV 120

Query: 404 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 583
           HSCCP+LD RDA RHQER+VHM+K+V +  SK+  LP  +FC L+AE+C+VQCPYAI IH
Sbjct: 121 HSCCPVLDIRDACRHQERIVHMQKLVLKRPSKFEALPAADFCTLRAEECKVQCPYAICIH 180

Query: 584 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDFRD 763
           G YDMGF+T+C AM++HG V+LRGTMMFDSEMLLY+ GF++DLNCVWS     ++FDFRD
Sbjct: 181 GAYDMGFETMCKAMNRHGTVLLRGTMMFDSEMLLYKEGFMADLNCVWSISGDRISFDFRD 240

Query: 764 ESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 880
           ESTLSYTHSFKNVKSFLTDQ+ V    AY+LERC+IE+G
Sbjct: 241 ESTLSYTHSFKNVKSFLTDQAFVYNNVAYLLERCSIEYG 279


>gb|AHG25371.2| replicase [Pelargonium zonate spot virus]
          Length = 983

 Score =  370 bits (950), Expect = e-117
 Identities = 175/291 (60%), Positives = 219/291 (75%), Gaps = 13/291 (4%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A SFNVRDL+++ G+ A+GVK LVD+ AT+ A++Q EY KR+K+V++RQ LS  +GEK++
Sbjct: 3   ATSFNVRDLINSNGADAMGVKGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 403
           KRFGG ++L+L+QEF APHSFA A+RQCETLECL  FPE   ILDFGGSWLFHW+R   V
Sbjct: 63  KRFGGTFDLQLSQEFIAPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 122

Query: 404 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 583
           HSCCP+LDARD ARHQER++ M+K V    SK+     P+FC LKAEDCEV+ PYAISIH
Sbjct: 123 HSCCPVLDARDMARHQERMISMQKCVAHRPSKFEAFESPDFCLLKAEDCEVRSPYAISIH 182

Query: 584 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 739
           G YDMGF+ LC AMH HG +MLRGTMMFD+ ML+++ G + DLNC W+K  G        
Sbjct: 183 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFDEGVMEDLNCRWTKEKGDPFGLRGA 242

Query: 740 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 880
                V FDF DESTLSY+HS+KN+KSFLT+  + I    Y+LERC I +G
Sbjct: 243 PCEDTVHFDFVDESTLSYSHSWKNIKSFLTEGGYQIENVQYVLERCVISYG 293


>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
          Length = 962

 Score =  369 bits (948), Expect = e-117
 Identities = 174/291 (59%), Positives = 219/291 (75%), Gaps = 13/291 (4%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A SFNVRDL+++ G+ A+GVK LVD+ AT+ A++Q EY KR+K+V++RQ LS  +GEK++
Sbjct: 3   ATSFNVRDLINSNGADAMGVKGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 403
           KRFGG ++L+L+QEF APHSFA A+RQCETLECL  FPE   ILDFGGSWLFHW+R   V
Sbjct: 63  KRFGGTFDLQLSQEFIAPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 122

Query: 404 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 583
           HSCCP+LDARD ARHQER++ M+K V     K+     P+FC LKAEDCEV+ PYAISIH
Sbjct: 123 HSCCPVLDARDMARHQERMISMQKCVAHRPGKFEAFESPDFCLLKAEDCEVRSPYAISIH 182

Query: 584 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 739
           G YDMGF+ LC AMH HG +MLRGTMMFD+ ML+++ G + DLNC W+K  G        
Sbjct: 183 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFDEGVMEDLNCRWTKEKGDPFGLRGA 242

Query: 740 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 880
               +V FDF DESTLSY+HS+KN+KSFLT+  + I    Y+LERC I +G
Sbjct: 243 PCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIENVQYVLERCVISYG 293


>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
 sp|Q9DUT3.1|1A_PZSVT RecName: Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase
 emb|CAC08526.1| unnamed protein product [Pelargonium zonate spot virus]
          Length = 962

 Score =  361 bits (926), Expect = e-114
 Identities = 171/291 (58%), Positives = 216/291 (74%), Gaps = 13/291 (4%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A SFNVRDL+++ G+ A+GV+ LVD+ AT+ A++Q EY KR+K+V++RQ LS  +GEK++
Sbjct: 3   ATSFNVRDLINSNGADAMGVRGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 403
           KRFGG ++L+L++    PHSFA A+RQCETLECL  FPE   ILDFGGSWLFHW+R   V
Sbjct: 63  KRFGGTFDLQLSKNL-CPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 121

Query: 404 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 583
           HSCCP+LDARD ARHQER++ M+K V     K+     P+FC LKAEDCEVQ PYAISIH
Sbjct: 122 HSCCPVLDARDMARHQERMISMQKCVAHRPGKFESFESPDFCLLKAEDCEVQSPYAISIH 181

Query: 584 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 739
           G YDMGF+ LC AMH HG +MLRGTMMFD+ ML++  G + DLNC W+K  G        
Sbjct: 182 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEGVMEDLNCRWTKEKGDPYGLRGA 241

Query: 740 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 880
               +V FDF DESTLSY+HS+KN+KSFLT+  + IG   Y+LERC I +G
Sbjct: 242 PCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIGNVQYVLERCVISYG 292


>ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus]
 emb|CAT02556.1| 1a protein [Gayfeather mild mottle virus]
          Length = 988

 Score =  281 bits (718), Expect = 6e-84
 Identities = 144/308 (46%), Positives = 187/308 (60%), Gaps = 32/308 (10%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           +FN+ +LV + G + +   ALVD +A +  ++Q+++ +R ++V+IR  L V++ E IR R
Sbjct: 5   AFNINNLVASNGDKGLMANALVDKIAHEQLEEQLQHQRRGRKVYIRNVLDVKDSEIIRSR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L LTQ+  APH  A ALR CETL+CLDFFP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLTQQEQAPHGLAGALRLCETLDCLDFFPNSGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+ M K +     K+ E   PNFC   A DC+V+  +AIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLMTMRKAILNDPQKF-EGRQPNFCTSPAADCDVKAHFAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK--------- 730
           IHGGYDMGFQ LC AMH HG  +L+GTMMFD  ML    GFI DL C W K         
Sbjct: 184 IHGGYDMGFQGLCQAMHAHGTTILKGTMMFDGAMLFDTEGFIPDLKCKWKKIKPFTFEKE 243

Query: 731 ------------------RNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYIL 856
                              N ++AFDF DESTLSY H ++NVKSFLTDQ++      Y +
Sbjct: 244 DQTSKVGKLNSVVFSAARVNTLIAFDFVDESTLSYVHEWENVKSFLTDQTYHYKGMTYGI 303

Query: 857 ERCTIEFG 880
           ERC I+ G
Sbjct: 304 ERCLIQNG 311


>gb|AAR89468.1| 1a protein [Peanut stunt virus]
          Length = 1004

 Score =  278 bits (710), Expect = 1e-82
 Identities = 142/304 (46%), Positives = 186/304 (61%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ DLV A GS  +   ALVD +A++  ++Q+ + +R  +V+IR +L ++E E IR R
Sbjct: 5   SFNLPDLVAANGSSGLIASALVDKVASEQLEEQLNHQRRGLKVYIRNRLDIKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDSFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL++M K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLNMRKAILNDPQTF-EGRQPNFCTNTAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H ++N+KSFLTDQ++  G   Y +ERC 
Sbjct: 244 NASAFSSKLNLSIGGRTLIAFDFENESTMSYVHEWRNIKSFLTDQTYSYGGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307


>emb|CAC86463.1| 1a protein [Tomato aspermy virus]
          Length = 993

 Score =  274 bits (700), Expect = 3e-81
 Identities = 142/310 (45%), Positives = 186/310 (60%), Gaps = 32/310 (10%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A +FN+  LV + G + +   ALVD LA +  ++Q+++ +R  +V+IR  L V++ E IR
Sbjct: 3   ASAFNIHKLVASHGDKGLLASALVDKLAHEQLEEQVQHQRRGLKVYIRNALDVKDSEIIR 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKR 391
            R+GG Y+L LTQ+  APH  A ALR CE L+CLD FP     +  +LDFGGSW+ H+ R
Sbjct: 63  DRYGGKYDLHLTQQEQAPHGLAGALRLCELLDCLDSFPRTGLRQDLVLDFGGSWVTHYLR 122

Query: 392 GSQVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYA 571
           G  VH C P L  RD  RH ERL+ M K++      + E   P+FC L AEDC+VQ  +A
Sbjct: 123 GHNVHCCSPCLGIRDKMRHTERLMTMRKVIVNDPDTF-ESRVPDFCTLPAEDCKVQAHFA 181

Query: 572 ISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK------- 730
           ISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G+++DL C W K       
Sbjct: 182 ISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEGYLADLKCKWKKIKPRTYE 241

Query: 731 --------------------RNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAY 850
                                + ++AFDF DESTLSY H ++NVKSFLTDQ++      Y
Sbjct: 242 SEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWENVKSFLTDQTYSYKGMTY 301

Query: 851 ILERCTIEFG 880
            LERC I+ G
Sbjct: 302 GLERCLIQHG 311


>gb|AHA10984.1| 1a protein [Tomato aspermy virus]
          Length = 993

 Score =  274 bits (700), Expect = 3e-81
 Identities = 142/310 (45%), Positives = 186/310 (60%), Gaps = 32/310 (10%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A +FN+  LV + G + +   ALVD LA +  ++Q+++ +R  +V+IR  L V++ E IR
Sbjct: 3   ASAFNIHKLVASHGDKGLLASALVDKLAHEQLEEQVQHQRRGLKVYIRNALDVKDSEIIR 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKR 391
            R+GG Y+L LTQ+  APH  A ALR CE L+CLD FP     +  +LDFGGSW+ H+ R
Sbjct: 63  DRYGGKYDLHLTQQEQAPHGLAGALRLCELLDCLDSFPRTGLRQDLVLDFGGSWVTHYLR 122

Query: 392 GSQVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYA 571
           G  VH C P L  RD  RH ERL+ M K++      + E   P+FC L AEDC+VQ  +A
Sbjct: 123 GHNVHCCSPCLGIRDKMRHTERLMTMRKVIVNDPDTF-ESRVPDFCTLPAEDCKVQAHFA 181

Query: 572 ISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK------- 730
           ISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G+++DL C W K       
Sbjct: 182 ISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEGYLADLKCKWKKIKPRTYE 241

Query: 731 --------------------RNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAY 850
                                + ++AFDF DESTLSY H ++NVKSFLTDQ++      Y
Sbjct: 242 SEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWENVKSFLTDQTYSYKGMTY 301

Query: 851 ILERCTIEFG 880
            LERC I+ G
Sbjct: 302 GLERCLIQHG 311


>emb|CAP19049.1| 1a protein [Peanut stunt virus]
          Length = 997

 Score =  274 bits (700), Expect = 3e-81
 Identities = 141/304 (46%), Positives = 182/304 (59%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ +LV   GS  +   ALVD +A +  ++Q+ + +R  +V+IR +L V+E E IR R
Sbjct: 5   SFNLSELVATRGSSGLVASALVDKVAAEQLEEQLHHQRRGLKVYIRNRLDVKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDAFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+ M K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLSMRKAILNDPQNF-EGRQPNFCTNPAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG + L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFEGLCRAMNAHGTIFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H +KN+KSFLTDQ+       Y +ERC 
Sbjct: 244 NASSLSSKLNLVVSGKTLIAFDFENESTMSYVHEWKNIKSFLTDQTFSYNGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307


>ref|NP_620760.1| 1a protein [Tomato aspermy virus]
 sp|P28931.1|1A_TAV RecName: Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase
 dbj|BAA00936.1| ORF [Tomato aspermy virus]
          Length = 993

 Score =  272 bits (696), Expect = 9e-81
 Identities = 141/310 (45%), Positives = 185/310 (59%), Gaps = 32/310 (10%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A +FN+  LV + G + +   ALVD LA +  ++Q+++ +R  +V+IR  L V++ E IR
Sbjct: 3   ASAFNIHKLVASHGDKGLLASALVDKLAHEQLEEQVQHQRRGLKVYIRNALDVKDSEIIR 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKR 391
            R+GG Y+L LTQ+  APH  A ALR CE L+CLD FP     +  +LDFGGSW+ H+ R
Sbjct: 63  DRYGGKYDLHLTQQEQAPHGLAGALRLCELLDCLDSFPRTGLRQDLVLDFGGSWVTHYLR 122

Query: 392 GSQVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYA 571
           G  VH C P L  RD  RH ERL+ M K++      + E   P+FC L AEDC+VQ  + 
Sbjct: 123 GHNVHCCSPCLGIRDKMRHTERLMTMRKVIVNDPDTF-ESRVPDFCTLPAEDCKVQAHFV 181

Query: 572 ISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK------- 730
           ISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G+++DL C W K       
Sbjct: 182 ISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEGYLADLKCKWKKIKPRTYE 241

Query: 731 --------------------RNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAY 850
                                + ++AFDF DESTLSY H ++NVKSFLTDQ++      Y
Sbjct: 242 SEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWENVKSFLTDQTYSYKGMTY 301

Query: 851 ILERCTIEFG 880
            LERC I+ G
Sbjct: 302 GLERCLIQHG 311


>dbj|BAF80085.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  272 bits (696), Expect = 1e-80
 Identities = 141/304 (46%), Positives = 183/304 (60%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ +LV + GS  +   ALVD +A++  ++Q+ + +R  +V+IR +L V+E E IR R
Sbjct: 5   SFNLNELVASHGSSGLIASALVDKVASEQLEEQLNHQRRGLKVYIRNRLDVKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDAFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+ M K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLSMRKAIINDPQTF-EGRQPNFCTNPAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H +KN+KSFLTDQ+       Y +ERC 
Sbjct: 244 NASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKSFLTDQTFSYNGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307


>gb|AOO95042.1| 1a protein [Tomato aspermy virus]
          Length = 993

 Score =  272 bits (695), Expect = 1e-80
 Identities = 141/310 (45%), Positives = 186/310 (60%), Gaps = 32/310 (10%)
 Frame = +2

Query: 47  AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 226
           A +FN+  LV + G + +   ALVD LA +  ++Q+++ +R  +V+IR  L V++ E IR
Sbjct: 3   ASAFNIHKLVASHGDKGLLASALVDKLAHEQLEEQVQHQRRGLKVYIRNALDVKDSEIIR 62

Query: 227 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKR 391
            R+GG ++L LTQ+  APH  A ALR CE L+CLD FP     +  +LDFGGSW+ H+ R
Sbjct: 63  DRYGGKHDLHLTQQEQAPHGLAGALRLCELLDCLDSFPRTGLRQDLVLDFGGSWVTHYLR 122

Query: 392 GSQVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYA 571
           G  VH C P L  RD  RH ERL+ M K++      + E   P+FC L AEDC+VQ  +A
Sbjct: 123 GHNVHCCSPCLGIRDKMRHTERLMTMRKVIVNDPDTF-ESRVPDFCTLPAEDCKVQAHFA 181

Query: 572 ISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK------- 730
           ISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G+++DL C W K       
Sbjct: 182 ISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEGYLADLKCKWKKIKPRTYE 241

Query: 731 --------------------RNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAY 850
                                + ++AFDF DESTLSY H ++NVKSFLTDQ++      Y
Sbjct: 242 SEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWENVKSFLTDQAYSYKGMTY 301

Query: 851 ILERCTIEFG 880
            LERC I+ G
Sbjct: 302 GLERCLIQHG 311


>gb|AFG28425.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  271 bits (692), Expect = 4e-80
 Identities = 140/304 (46%), Positives = 182/304 (59%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ +LV + GS  +   ALVD +A++  ++Q+ + +R  +V+IR +L V+E E IR R
Sbjct: 5   SFNLNELVASHGSSGLIASALVDKVASEQLEEQLNHQRRGLKVYIRNRLDVKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDAFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+   K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLSQRKAIINDPQTF-ENRQPNFCTNPAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H +KN+KSFLTDQ+       Y +ERC 
Sbjct: 244 NASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKSFLTDQTFSYNGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307


>gb|ADN83830.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  271 bits (692), Expect = 4e-80
 Identities = 140/304 (46%), Positives = 182/304 (59%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ +LV + GS  +   ALVD +A++  ++Q+ + +R  +V+IR +L V+E E IR R
Sbjct: 5   SFNLNELVASHGSSGLIASALVDKVASEQLEEQLNHQRRGLKVYIRNRLDVKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDAFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+   K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLSQRKAIINDPQTF-ENRQPNFCTNPAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H +KN+KSFLTDQ+       Y +ERC 
Sbjct: 244 NASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKSFLTDQTFSYNGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307


>gb|ACF34993.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  270 bits (691), Expect = 6e-80
 Identities = 140/304 (46%), Positives = 183/304 (60%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ +LV + GS  +   ALVD +A++  ++Q+ + +R  +V+IR +L V+E E IR R
Sbjct: 5   SFNLNELVASHGSSGLIASALVDKVASEQLEEQLNHQRRGLKVYIRNRLDVKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDAFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+ M K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLSMRKAIINDPQTF-EGRQPNFCTNPAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFKGLCRAMNAHGTTFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H ++N+KSFLTDQ+       Y +ERC 
Sbjct: 244 NASAFTSKLNLAISGKTLIAFDFENESTMSYIHEWENIKSFLTDQTFSYNGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307


>gb|AMX23554.1| 1a protein [Cucumber mosaic virus]
          Length = 990

 Score =  270 bits (689), Expect = 9e-80
 Identities = 136/306 (44%), Positives = 187/306 (61%), Gaps = 30/306 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           SFN+ +LV + G + +   ALVD  A +  ++Q+++ +R ++V+IR  LSV++ E IR R
Sbjct: 5   SFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGRKVYIRNVLSVKDSEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L LTQ+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGLRQDPVLDFGGSWVTHYLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL++M K++     ++ +   P+FC   A DC+V   +AIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLMNMRKIILNDPQQF-DGRQPDFCTHPAADCDVPAHFAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG  +L+GTMMFD  M+  + G I +LNC W K         
Sbjct: 184 IHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQGIIPELNCQWRKIRSAFSETE 243

Query: 740 -------------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILER 862
                              +VAFDF +EST+SY H +KN+KSF+TDQ++      Y +ER
Sbjct: 244 DVTSLSGKIASTRVRKFKTMVAFDFINESTMSYVHDWKNIKSFMTDQTYSYKGMTYGIER 303

Query: 863 CTIEFG 880
           CTI  G
Sbjct: 304 CTINAG 309


>ref|YP_233101.2| 1a protein [Cassia yellow blotch virus]
 dbj|BAD98316.2| 1a protein [Cassia yellow blotch virus]
          Length = 955

 Score =  269 bits (687), Expect = 1e-79
 Identities = 135/275 (49%), Positives = 184/275 (66%), Gaps = 2/275 (0%)
 Frame = +2

Query: 44  MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 223
           MA   ++  L+  +G+++ GV  +VD+ ATQ    Q+E+ +R+K++ IR +L+  E E  
Sbjct: 1   MASLIDLNSLISKKGAESRGVLDIVDNQATQQVLSQVEHLRRSKKINIRNKLAPSEVEAF 60

Query: 224 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRGS- 397
           + R+GGA++L LTQE+ APHS A ALR  E  +C+D FP E  I+DFGGSW  H+ R   
Sbjct: 61  KARYGGAFDLNLTQEYNAPHSLAGALRIAEHYDCMDSFPPEDRIIDFGGSWWHHYARKDF 120

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
           +VH CCPIL  RDAARH+ER+  + ++++  SS Y E P  +FC  KA DC VQ  +AI 
Sbjct: 121 RVHCCCPILGVRDAARHEERMCRLRRLLQ--SSDYEETP--DFCLNKARDCNVQADWAIC 176

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDF 757
           IHGGYDMGF+ LC +M  HG  +L+GT+MFD  ML  ESGF+  L C W K  G V FDF
Sbjct: 177 IHGGYDMGFKDLCHSMRSHGVRILKGTIMFDGAMLFDESGFLPLLKCRWKKEKGFVKFDF 236

Query: 758 RDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILER 862
            +ESTLSY HS+  + SF T+  + IG+T Y+LER
Sbjct: 237 ENESTLSYIHSWDKLGSFFTESVYRIGSTTYLLER 271


>ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus]
 dbj|BAI40161.1| 1a protein [Melandrium yellow fleck virus]
          Length = 948

 Score =  268 bits (686), Expect = 1e-79
 Identities = 136/277 (49%), Positives = 182/277 (65%), Gaps = 6/277 (2%)
 Frame = +2

Query: 68  DLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKRFGGAY 247
           +L+   GS++ GV+ +VD  AT+   +Q+E+ KR+K++ +R +LS QE +  R R+GGAY
Sbjct: 5   NLIAERGSKSHGVEMVVDDQATKQVLEQVEHLKRSKRITVRNKLSPQEADAFRARYGGAY 64

Query: 248 ELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRGS-QVHSCCPI 421
           ELKLTQE+ APHS A ALR  E  +CL  FP E  ++DFGGSW  H+ R   +VHSCCPI
Sbjct: 65  ELKLTQEYEAPHSLAGALRIAEHYDCLGQFPLEDPVIDFGGSWWHHYSREDYRVHSCCPI 124

Query: 422 LDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIHGGYDMG 601
           L  RDA RH+ERL  M K++            P+FC  KAEDC+VQ  +AI IHGGYDMG
Sbjct: 125 LGVRDATRHEERLCRMRKLLEVKDFS----QAPDFCLNKAEDCKVQADWAICIHGGYDMG 180

Query: 602 FQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IVAFDFRDES 769
           F+ LC AM+ HG  +LRGT+MFD  ML    G I  LNC W +       ++ FDF +ES
Sbjct: 181 FKNLCKAMNSHGVRILRGTIMFDGAMLFDRQGTIPLLNCRWMREGSGSSEVIKFDFVNES 240

Query: 770 TLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 880
           TLSY H+++N+ SFLT+    +G+T Y+LER  +  G
Sbjct: 241 TLSYVHNWRNLGSFLTESVCCVGSTTYLLEREVLRCG 277


>sp|P28726.1|1A_PSVJ RecName: Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase
 dbj|BAA01900.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  269 bits (688), Expect = 1e-79
 Identities = 140/304 (46%), Positives = 182/304 (59%), Gaps = 28/304 (9%)
 Frame = +2

Query: 53  SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 232
           S N+ +LV + GS  +   ALVD +A++  ++Q+ + +R  +V+IR +L V+E E IR R
Sbjct: 5   SSNLNELVASHGSSGLIASALVDKVASEQLEEQLNHQRRGLKVYIRNRLDVKESEVIRNR 64

Query: 233 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-----EGEILDFGGSWLFHWKRGS 397
           +GG Y+L L+Q+  APH  A ALR CETL+CLD FP     +  +LDFGGSW+ H+ RG 
Sbjct: 65  YGGKYDLHLSQQEHAPHGLAGALRLCETLDCLDAFPRTGLRQDLVLDFGGSWVTHFLRGH 124

Query: 398 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 577
            VH C P L  RD  RH ERL+ M K +      + E   PNFC   AE C+VQ  YAIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLLSMRKAIINDPQTF-EGRQPNFCTNPAEKCDVQAHYAIS 183

Query: 578 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 739
           IHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SGFI +L C W K         
Sbjct: 184 IHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSGFIPELKCHWRKIKNAFSEKE 243

Query: 740 -----------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCT 868
                            ++AFDF +EST+SY H +KN+KSFLTDQ+       Y +ERC 
Sbjct: 244 NASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKSFLTDQTFSYNGYTYGIERCV 303

Query: 869 IEFG 880
           I  G
Sbjct: 304 IYAG 307