BLASTX nr result
ID: Rehmannia32_contig00000651
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00000651
(622 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KZV46037.1| hypothetical protein F511_11353 [Dorcoceras hygro... 188 2e-58
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 162 3e-58
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 153 6e-56
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024... 157 3e-55
gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus] 147 4e-55
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 150 5e-55
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 157 1e-53
gb|KYP72416.1| Retrovirus-related Pol polyprotein from transposo... 145 2e-53
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 144 5e-53
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 151 1e-52
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 151 1e-52
gb|OAE31340.1| hypothetical protein AXG93_4510s1160 [Marchantia ... 154 7e-52
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 142 9e-52
gb|POM77273.1| Integrase catalytic core protein [Phytophthora pa... 133 9e-52
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 135 2e-51
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 145 4e-51
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 131 8e-51
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 131 8e-51
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 131 8e-51
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera] 139 8e-51
>gb|KZV46037.1| hypothetical protein F511_11353 [Dorcoceras hygrometricum]
Length = 101
Score = 188 bits (477), Expect = 2e-58
Identities = 88/101 (87%), Positives = 96/101 (95%)
Frame = +3
Query: 60 MNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESVRFKARLVAKGFTQKEGIDY 239
M+EE+NS+HVN TW LVPKP NCSVVDCKWLFKVK+E SVR+KARLVAKGFTQ+EG+DY
Sbjct: 1 MHEEINSMHVNKTWELVPKPPNCSVVDCKWLFKVKSEGNSVRYKARLVAKGFTQREGVDY 60
Query: 240 TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDL 362
TEIFAPVVKFTTVRIMLALCAQF+WELKQMDVKTAFLHGDL
Sbjct: 61 TEIFAPVVKFTTVRIMLALCAQFDWELKQMDVKTAFLHGDL 101
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 162 bits (409), Expect(2) = 3e-58
Identities = 73/125 (58%), Positives = 100/125 (80%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 182
P+ Y+E ++S+N +WL AM++EM SLH N+TW L+ KPA +V CKW+FKVK E V
Sbjct: 794 PRDYKEVMRSRNKTEWLKAMDDEMKSLHDNHTWELIKKPAGARLVSCKWIFKVKEGIEGV 853
Query: 183 ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
R+KARLVA+GFTQKEG+D+ ++F+PVVK ++R++LA+ AQF+ EL+QMDVKTAFL+
Sbjct: 854 TSKRYKARLVARGFTQKEGVDFNDVFSPVVKHRSIRMLLAMVAQFDLELEQMDVKTAFLY 913
Query: 354 GDLDE 368
GDLDE
Sbjct: 914 GDLDE 918
Score = 91.7 bits (226), Expect(2) = 3e-58
Identities = 40/82 (48%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFK-ENAS 553
PEG+V++ D+VC LK+SLYGLKQSPR WN++FD M + F RS +DHC+YF+ +
Sbjct: 925 PEGYVERGKEDYVCKLKRSLYGLKQSPRQWNRRFDKFMARISFIRSQFDHCVYFRFRPGN 984
Query: 554 VPIFLLIYVDDMLLISSCIKSI 619
+ LL+YVDD+L+ S+ ++ +
Sbjct: 985 SFVILLLYVDDILIASNNVEDV 1006
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 153 bits (387), Expect(2) = 6e-56
Identities = 72/125 (57%), Positives = 98/125 (78%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 173
P+SY+EA++SK+S WL++M++EM SL N TW LVP P VDCKWLFK+K+
Sbjct: 914 PRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXD 973
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E ++K+RLVAKGF+QKEGIDY E+F+PVVK ++R++LA+ + FN EL Q+DVKTAFLH
Sbjct: 974 EPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLH 1033
Query: 354 GDLDE 368
G+L+E
Sbjct: 1034 GNLEE 1038
Score = 92.4 bits (228), Expect(2) = 6e-56
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 4/77 (5%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGFVD + D VC LKKSLYGLKQSPR W K+FD M+S +F R+ YD C+YFK ++
Sbjct: 1045 PEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFK---TL 1101
Query: 557 P----IFLLIYVDDMLL 595
P I+LL+YVDDML+
Sbjct: 1102 PDGSFIYLLLYVDDMLI 1118
>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
Length = 1892
Score = 157 bits (398), Expect(2) = 3e-55
Identities = 77/125 (61%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN---EC 173
P SY EA K++A W AM EEM SLH N TW+LV +P V CKW++K K E
Sbjct: 1378 PSSYIEATSCKDAAQWQLAMMEEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEV 1437
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E+ RFKARLVAKGF+QKEGIDY EIF+PVVK +++R++LAL AQF+ EL+Q+DVKTAFLH
Sbjct: 1438 EAARFKARLVAKGFSQKEGIDYNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLH 1497
Query: 354 GDLDE 368
GDL+E
Sbjct: 1498 GDLEE 1502
Score = 85.9 bits (211), Expect(2) = 3e-55
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAS 553
PEGF+ + D VC LKKSLYGLKQSPR W K+FD M + F RS++D C+Y K+ + +
Sbjct: 1509 PEGFLAEGKEDHVCQLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAFDSCVYHKKMSGN 1568
Query: 554 VPIFLLIYVDDMLLISSCIKSI 619
I+LL+YVDDML+ ++ I I
Sbjct: 1569 SMIYLLLYVDDMLIAANNITEI 1590
>gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]
Length = 1308
Score = 147 bits (370), Expect(2) = 4e-55
Identities = 71/125 (56%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 182
P +Y EA+ S++S W AM EEM+SLH N TW+LV KP +V CKW+FK+K V
Sbjct: 789 PLTYNEAIASEDSERWQVAMQEEMDSLHKNQTWVLVDKPKGQKIVTCKWIFKLKEGIPGV 848
Query: 183 ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
R+KARLVAKGFTQ+ GIDY E+F+PVVK +++R++L+L A EL+Q+DVKTAFLH
Sbjct: 849 EGPRYKARLVAKGFTQRAGIDYNEVFSPVVKHSSIRVILSLTAVMGMELEQLDVKTAFLH 908
Query: 354 GDLDE 368
G LDE
Sbjct: 909 GYLDE 913
Score = 96.3 bits (238), Expect(2) = 4e-55
Identities = 47/74 (63%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENA-S 553
P+GFV K D VCLLK+SLYGLKQSPR W K+FD+ M+S FKRSSYD C+YFKE
Sbjct: 920 PQGFVKKGEEDKVCLLKRSLYGLKQSPRQWYKRFDEYMVSNSFKRSSYDACVYFKEYCPG 979
Query: 554 VPIFLLIYVDDMLL 595
++LL+YVDDML+
Sbjct: 980 KYVYLLLYVDDMLV 993
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 150 bits (380), Expect(2) = 5e-55
Identities = 72/125 (57%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 173
P+SY+EA + K W NA +EEM+SL N TW LV KP N ++ C+WLFK+K+
Sbjct: 517 PESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGV 576
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E VRFKARLVAKG+TQ+EG+DY EIFAPVVK T++R+++++ + EL+QMDVKTAFLH
Sbjct: 577 EPVRFKARLVAKGYTQREGVDYQEIFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLH 636
Query: 354 GDLDE 368
GDL+E
Sbjct: 637 GDLEE 641
Score = 92.0 bits (227), Expect(2) = 5e-55
Identities = 43/73 (58%), Positives = 54/73 (73%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGF+ K D VCLLKKSLYGLKQSPR WNK+F M+ KF RS++D C+Y K+
Sbjct: 648 PEGFITDKTKDKVCLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSAHDACVYVKQVEQG 707
Query: 557 PIFLLIYVDDMLL 595
++LL+YVDDML+
Sbjct: 708 FVYLLLYVDDMLI 720
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 157 bits (396), Expect(2) = 1e-53
Identities = 71/125 (56%), Positives = 100/125 (80%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEC 173
P +YE+A++S SA W+ AM EEM SLH N+ W LVPKP +V CKW+F+ K +E
Sbjct: 782 PTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHED 841
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
+++ +KARLVAKG++QKEG+DY EIF+PVVK T++R++L++ AQ++ E++QMDVKTAFLH
Sbjct: 842 DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLH 901
Query: 354 GDLDE 368
GDL+E
Sbjct: 902 GDLEE 906
Score = 81.3 bits (199), Expect(2) = 1e-53
Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFK--ENA 550
PEGFV+ + VC LKKSLYGLKQSPR W K FD ML + + R YD C+Y+ E+
Sbjct: 913 PEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDG 972
Query: 551 SVPIFLLIYVDDMLL 595
V I LL+YVDDML+
Sbjct: 973 KV-ILLLLYVDDMLI 986
>gb|KYP72416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 328
Score = 145 bits (366), Expect(2) = 2e-53
Identities = 71/125 (56%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 182
P E L SK WLNAM EEM SLH N+TW ++ KP VV CKWLFK K + V
Sbjct: 11 PMDIEFVLVSKEKQSWLNAMKEEMKSLHDNHTWKMIKKPIGSRVVSCKWLFKKKEGIQGV 70
Query: 183 ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
R+KARLVA+GFTQKEG+D+ E+F+PVVK ++RI+L++ A + EL+QMDVKTAFL+
Sbjct: 71 EPARYKARLVARGFTQKEGVDFNEVFSPVVKHRSIRILLSMVATLDLELEQMDVKTAFLY 130
Query: 354 GDLDE 368
G LDE
Sbjct: 131 GKLDE 135
Score = 92.4 bits (228), Expect(2) = 2e-53
Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFK-ENAS 553
PEGFV+K D VC L KSL GLKQSPR WN++FD+ M + F RS YD+C+YFK + +
Sbjct: 142 PEGFVEKGKEDHVCKLNKSLCGLKQSPRQWNRRFDEFMTKISFNRSQYDNCVYFKFPDNA 201
Query: 554 VPIFLLIYVDDMLLISS 604
V I LL+YVDD+L+ S+
Sbjct: 202 VLIILLLYVDDILIASN 218
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 144 bits (362), Expect(2) = 5e-53
Identities = 70/125 (56%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 182
PKSYEEALKS W NAM EEM+S ++TW L+ KP ++ CKW+FK+K V
Sbjct: 733 PKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGV 792
Query: 183 ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
R+KARLVAKGF+Q+EGIDY E+F+ VVK ++R+ML+L ++EL+QMDVKTAFLH
Sbjct: 793 EKQRYKARLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLH 852
Query: 354 GDLDE 368
G+L+E
Sbjct: 853 GNLEE 857
Score = 92.4 bits (228), Expect(2) = 5e-53
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAS 553
PEGF+ + N + VCLL+KSLYGLKQSPR WN++FD M KF+RS YD C+Y ++
Sbjct: 864 PEGFIQEGNENKVCLLRKSLYGLKQSPRLWNQRFDAFMKDQKFERSCYDPCVYMRDTQTD 923
Query: 554 VPIFLLIYVDDMLLISSCIKSIE 622
I+LL+YVDDML+ S + I+
Sbjct: 924 KAIYLLLYVDDMLIASGNMAIIQ 946
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 151 bits (382), Expect(2) = 1e-52
Identities = 73/125 (58%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 173
P SY EA+ SA W AM+EE+ SLH N+TW LV P+N +V CKW+FK K
Sbjct: 1301 PSSYNEAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGV 1360
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E+ RFKARLVAKGFTQKEGIDY E+F+PVVK +++R++LA+ A+ + EL+Q+DVKTAFLH
Sbjct: 1361 EATRFKARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLH 1420
Query: 354 GDLDE 368
G+L+E
Sbjct: 1421 GELEE 1425
Score = 83.2 bits (204), Expect(2) = 1e-52
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAS 553
PEGF D VCLLKKSLYGLKQSPR W K+FD M+ + R YD C+Y ++ +
Sbjct: 1432 PEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDG 1491
Query: 554 VPIFLLIYVDDMLLISSCIKSI 619
I+LL+YVDDML+ S + I
Sbjct: 1492 SHIYLLLYVDDMLIASKNMSEI 1513
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 151 bits (382), Expect(2) = 1e-52
Identities = 73/125 (58%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 173
P SY EA+ SA W AM+EE+ SLH N+TW LV P+N +V CKW+FK K
Sbjct: 1322 PSSYNEAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGV 1381
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E+ RFKARLVAKGFTQKEGIDY E+F+PVVK +++R++LA+ A+ + EL+Q+DVKTAFLH
Sbjct: 1382 EATRFKARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLH 1441
Query: 354 GDLDE 368
G+L+E
Sbjct: 1442 GELEE 1446
Score = 83.2 bits (204), Expect(2) = 1e-52
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAS 553
PEGF D VCLLKKSLYGLKQSPR W K+FD M+ + R YD C+Y ++ +
Sbjct: 1453 PEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDG 1512
Query: 554 VPIFLLIYVDDMLLISSCIKSI 619
I+LL+YVDDML+ S + I
Sbjct: 1513 SHIYLLLYVDDMLIASKNMSEI 1534
>gb|OAE31340.1| hypothetical protein AXG93_4510s1160 [Marchantia polymorpha subsp.
ruderalis]
Length = 467
Score = 154 bits (388), Expect(2) = 7e-52
Identities = 74/125 (59%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN---EC 173
P Y++A+ +S W AM EEM SL+ N TW +VP+P + V C+WL+K+K
Sbjct: 250 PLYYQDAIAGSDSEKWKEAMREEMESLYRNKTWNIVPRPKDQKPVTCRWLYKIKEGVVNS 309
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E RFKARLVAKGFTQ EG+DY EIF+PVVK+ T+RIMLAL Q+N EL+QMDVKTAFLH
Sbjct: 310 EEPRFKARLVAKGFTQVEGVDYNEIFSPVVKYKTIRIMLALVVQYNLELQQMDVKTAFLH 369
Query: 354 GDLDE 368
GDL+E
Sbjct: 370 GDLEE 374
Score = 78.6 bits (192), Expect(2) = 7e-52
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKEN 547
P G+ +K D VCLLKKSLYGLKQSPR W K+FD ML + RSSYD CLYFK N
Sbjct: 381 PPGYEVQKGRDMVCLLKKSLYGLKQSPRQWYKRFDTFMLEQGYNRSSYDSCLYFKGN 437
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 142 bits (357), Expect(2) = 9e-52
Identities = 67/126 (53%), Positives = 95/126 (75%), Gaps = 4/126 (3%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE---- 170
P ++ EA++S + WL AM +EM SL N TW L+P P N +++CKW+FK +NE
Sbjct: 814 PANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPD 872
Query: 171 CESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFL 350
E ++KARLVA+GFTQ+EG+D+ EIF+PVVK +++RI+LA+ A + EL+QMDVKTAFL
Sbjct: 873 VEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFL 932
Query: 351 HGDLDE 368
HG+L+E
Sbjct: 933 HGNLEE 938
Score = 90.1 bits (222), Expect(2) = 9e-52
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGF K D+VCLL KSLYGLKQSPR W ++FDD M+S ++RS YD C+YF +
Sbjct: 945 PEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQG 1004
Query: 557 PI-FLLIYVDDMLLISSCIKSIE 622
+ +LL+YVDDML+ S IE
Sbjct: 1005 GVAYLLLYVDDMLIASKYKSEIE 1027
>gb|POM77273.1| Integrase catalytic core protein [Phytophthora palmivora var.
palmivora]
Length = 643
Score = 133 bits (335), Expect(2) = 9e-52
Identities = 63/122 (51%), Positives = 87/122 (71%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 182
P ++ A++S N+A W A + E+NSL N TW+LVP P + C+W+F++K E ++
Sbjct: 367 PTTFTSAMESSNAAKWKEACDSEINSLRKNETWVLVPLPKGRKAISCRWVFRIK-ENQAG 425
Query: 183 RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDL 362
+ RLVAKGF QK GIDY E FAPV KFT++RI+L+L A++N + QMDVKTAFL+G L
Sbjct: 426 EIERRLVAKGFLQKYGIDYEETFAPVAKFTSIRILLSLAAKYNLTVHQMDVKTAFLNGWL 485
Query: 363 DE 368
DE
Sbjct: 486 DE 487
Score = 98.6 bits (244), Expect(2) = 9e-52
Identities = 43/76 (56%), Positives = 56/76 (73%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
P+GF+D+ +PDFVC LK+SLYGLKQSPR WN+ D ML L FK+ DHC+Y K N
Sbjct: 494 PDGFIDEAHPDFVCKLKRSLYGLKQSPRMWNQTIDKFMLELGFKKCEADHCIYVKRNDHD 553
Query: 557 PIFLLIYVDDMLLISS 604
IF+ +YVDD++L S+
Sbjct: 554 MIFVALYVDDLILASN 569
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 135 bits (339), Expect(2) = 2e-51
Identities = 68/125 (54%), Positives = 87/125 (69%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 173
PKSY+EAL + W AM EEM S+ N+TW LV KP ++ C+W+F K
Sbjct: 816 PKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGV 875
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E+ RF ARLVAKGFTQKEG+DY EIF+PVVK ++R +L++ +N EL+QMDVKTAFLH
Sbjct: 876 EAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLH 935
Query: 354 GDLDE 368
G L+E
Sbjct: 936 GFLEE 940
Score = 95.9 bits (237), Expect(2) = 2e-51
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAS 553
PEGF K+ + VCLLK+SLYGLKQSPR WN +FD+ M +K+ RS+YD C+YFK+ N
Sbjct: 947 PEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGD 1006
Query: 554 VPIFLLIYVDDMLLISS 604
I+LL+YVDDML+ S+
Sbjct: 1007 TYIYLLLYVDDMLIASA 1023
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 145 bits (365), Expect(2) = 4e-51
Identities = 67/124 (54%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 182
P +++EA+ S + + W AM EE+ +LH NNTW LVP P + KW+FK+K +
Sbjct: 781 PSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQ 840
Query: 183 --RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHG 356
R++ARLV KG+ QKEGID+ EIF+PVV+ TTVR++LA+CA FN L+Q+DVKTAFLHG
Sbjct: 841 VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHG 900
Query: 357 DLDE 368
DL+E
Sbjct: 901 DLEE 904
Score = 84.7 bits (208), Expect(2) = 4e-51
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAS 553
PEGF DK+N + VC L KSLYGLKQ+PRCW K+FD ++ L + R + D C YFK
Sbjct: 911 PEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKD 970
Query: 554 VPIFLLIYVDDMLL 595
+ LL+YVDDML+
Sbjct: 971 NFVILLLYVDDMLV 984
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1373
Score = 131 bits (330), Expect(2) = 8e-51
Identities = 59/125 (47%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEC 173
P +Y+EA++ +S +W++AM+EEM SL N+TW +VP P + CKW+FK K +
Sbjct: 817 PATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS 876
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E ++KARLVA+G++Q G+DY ++F+PVVK +++R L++ A + EL+Q+DVKTAFLH
Sbjct: 877 EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936
Query: 354 GDLDE 368
G+L+E
Sbjct: 937 GELEE 941
Score = 97.4 bits (241), Expect(2) = 8e-51
Identities = 45/73 (61%), Positives = 53/73 (72%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGF+ +VC LK+SLYGLKQSPR WNK+FD MLS FKRS YD C+Y K
Sbjct: 948 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS 1007
Query: 557 PIFLLIYVDDMLL 595
PI+LL+YVDDML+
Sbjct: 1008 PIYLLLYVDDMLI 1020
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 131 bits (330), Expect(2) = 8e-51
Identities = 59/125 (47%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEC 173
P +Y+EA++ +S +W++AM+EEM SL N+TW +VP P + CKW+FK K +
Sbjct: 817 PATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS 876
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E ++KARLVA+G++Q G+DY ++F+PVVK +++R L++ A + EL+Q+DVKTAFLH
Sbjct: 877 EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936
Query: 354 GDLDE 368
G+L+E
Sbjct: 937 GELEE 941
Score = 97.4 bits (241), Expect(2) = 8e-51
Identities = 45/73 (61%), Positives = 53/73 (72%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGF+ +VC LK+SLYGLKQSPR WNK+FD MLS FKRS YD C+Y K
Sbjct: 948 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS 1007
Query: 557 PIFLLIYVDDMLL 595
PI+LL+YVDDML+
Sbjct: 1008 PIYLLLYVDDMLI 1020
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 131 bits (330), Expect(2) = 8e-51
Identities = 59/125 (47%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEC 173
P +Y+EA++ +S +W++AM+EEM SL N+TW +VP P + CKW+FK K +
Sbjct: 817 PATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS 876
Query: 174 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 353
E ++KARLVA+G++Q G+DY ++F+PVVK +++R L++ A + EL+Q+DVKTAFLH
Sbjct: 877 EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936
Query: 354 GDLDE 368
G+L+E
Sbjct: 937 GELEE 941
Score = 97.4 bits (241), Expect(2) = 8e-51
Identities = 45/73 (61%), Positives = 53/73 (72%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGF+ +VC LK+SLYGLKQSPR WNK+FD MLS FKRS YD C+Y K
Sbjct: 948 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS 1007
Query: 557 PIFLLIYVDDMLL 595
PI+LL+YVDDML+
Sbjct: 1008 PIYLLLYVDDMLI 1020
>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
Length = 1261
Score = 139 bits (349), Expect(2) = 8e-51
Identities = 68/123 (55%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 PKSYEEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECE-S 179
P+ Y+EAL+ +NS+ W AM +EM+SL N TW L P + KW++++KNE + S
Sbjct: 747 PECYDEALQDENSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWVYRIKNEHDGS 806
Query: 180 VRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGD 359
R+KARLV KGF QKEGIDYTEIF+PVVK +T+R++L + A N L+Q+DVKTAFLHGD
Sbjct: 807 KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD 866
Query: 360 LDE 368
L+E
Sbjct: 867 LEE 869
Score = 90.1 bits (222), Expect(2) = 8e-51
Identities = 44/81 (54%), Positives = 55/81 (67%)
Frame = +2
Query: 377 PEGFVDKKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENASV 556
PEGF+ + + VC L+KSLYGLKQ+PR W KKFD+ M + FKR DHC YFK +
Sbjct: 876 PEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNS 935
Query: 557 PIFLLIYVDDMLLISSCIKSI 619
I LL+YVDDML+ S I+ I
Sbjct: 936 YIILLLYVDDMLIAGSDIEKI 956