BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00027661
         (441 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX86003.1| retrotransposon protein [Trifolium pratense]            48   5e-06

>gb|PNX86003.1| retrotransposon protein [Trifolium pratense]
          Length = 490

 Score = 48.1 bits (113), Expect(2) = 5e-06
 Identities = 22/39 (56%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = +1

Query: 46  YTRICL*IDDLIYTGTSPVLLRESKEAMV-EYQMTDLGL 159
           +  +CL +DDLIY GT+P +++  KEAM+ EY+MTDLGL
Sbjct: 172 FLMVCLYVDDLIYAGTNPNMVQSFKEAMMKEYEMTDLGL 210



 Score = 29.6 bits (65), Expect(2) = 5e-06
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 159 LMKYFLGIQVRQSKEKLLFLKK 224
           LMKYFLGIQV+Q+K ++   ++
Sbjct: 210 LMKYFLGIQVKQTKGEIFITQE 231