BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00027578
         (1283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424...   333   e-100
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               317   2e-93
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   313   2e-92
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   307   3e-91
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   304   4e-90
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   307   5e-90
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   305   2e-89
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo...   305   4e-89
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   295   4e-88
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               296   5e-86
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               296   6e-86
gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo...   291   1e-85
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo...   278   7e-85
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   290   8e-84
dbj|GAU37351.1| hypothetical protein TSUD_395330 [Trifolium subt...   283   1e-81
ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178...   256   1e-73
ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177...   259   3e-73
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   253   5e-71
dbj|GAU17915.1| hypothetical protein TSUD_330400, partial [Trifo...   242   1e-67
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...   239   2e-67

>ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424043 [Ziziphus jujuba]
          Length = 1270

 Score =  333 bits (855), Expect = e-100
 Identities = 181/427 (42%), Positives = 230/427 (53%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            DDY+ FTWIYP+ +KSE   IF HF  +VER F+TK+K +QSDWGGEYR   P LQ +GI
Sbjct: 718  DDYSRFTWIYPMTVKSEALFIFKHFHVMVERLFDTKLKVVQSDWGGEYRCFLPYLQQVGI 777

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
             FRH CP+ H QNG++ERKHRHIVE+GL+ L QA MPL YWWEAF ++ ++IN L T  L
Sbjct: 778  KFRHSCPYMHQQNGRAERKHRHIVEVGLSFLAQAHMPLLYWWEAFTSAVYVINRLPTAIL 837

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            +  SP E               G ACFP ++ +  HK  F + KCVFIGYS +HKGYKC+
Sbjct: 838  DFHSPFELLFKKVPDYDFLKVFGSACFPFLRPFQNHKFQFHTEKCVFIGYSDDHKGYKCM 897

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
              SGKIYIA+SV            F+   F  S  F Q+S+           H +QV   
Sbjct: 898  SSSGKIYIARSVN-----------FNEKEFPFSTGFLQTSSAD-----KVKLHKTQVSTA 941

Query: 722  XXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXX 901
                         +   NLS+ S  S+S                                
Sbjct: 942  PLILIKSLPQHCGSDS-NLSTSSSSSVSLNNSPTLTSGNHNQFDIRLESELPMDPLETST 1000

Query: 902  XXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLS 1081
                              M TRSK G+FKPK +  +     +      + P SV  A  +
Sbjct: 1001 TLSNVNQNPSQIIISTHPMQTRSKSGVFKPKVFALTQQAADSVD----VEPVSVTDALTN 1056

Query: 1082 PEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGF 1261
            P WK AMD EY AL++N+TW LVP  S MN++ +KW+FR+K N+DG+VQR+KARLVAKGF
Sbjct: 1057 PRWKAAMDQEYGALVKNNTWSLVPYHSGMNLIGHKWIFRVKRNADGTVQRYKARLVAKGF 1116

Query: 1262 QQQPGID 1282
             QQPG D
Sbjct: 1117 HQQPGFD 1123


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  317 bits (812), Expect = 2e-93
 Identities = 179/436 (41%), Positives = 231/436 (52%), Gaps = 9/436 (2%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D  T +TW+Y LK KS+    F  F  LV  +F+TKIK+LQSDWGGEYRS++ +L +LGI
Sbjct: 600  DACTKYTWLYFLKRKSDALSAFTQFNALVSTQFQTKIKSLQSDWGGEYRSISTLLTSLGI 659

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
            + R  CPHT  QNG  ER+HR IVE+GLTLL+ A+MPL +W  +F T+ FL+N L T +L
Sbjct: 660  NHRVTCPHTSHQNGTVERRHRSIVEIGLTLLSHANMPLNFWDHSFTTAVFLLNRLPTASL 719

Query: 362  NH-QSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKC 538
            +H  SP  A              GC CFPH++ YN HKLDFRSTKCV++G SP+HKGYKC
Sbjct: 720  HHFTSPYHALYNKIPDYSSIKGFGCTCFPHLRPYNSHKLDFRSTKCVYLGPSPHHKGYKC 779

Query: 539  LHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFL----SHSS 706
            L P G++YI++ V FNE EFP+S      F   S S   ++   +S  +P L    S + 
Sbjct: 780  LSPDGRVYISKDVVFNELEFPYS----ILFPNTSRSAPTNTTHSWSSVIPTLPSIVSGTP 835

Query: 707  QVQEXXXXXXXXXXXXXEAPPRNLSSD----SPPSLSQGXXXXXXXXXXXXXXXXAPVIN 874
              +                 P N+SS     SP S +                   PV  
Sbjct: 836  PTESAIGSPLIDSSTPISPVPNNVSSAPLPISPQSPASAPSSPSPVSISPPPDTSLPV-- 893

Query: 875  DXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITP 1054
                                       M+TR K G  KPK +L+               P
Sbjct: 894  -------------KKTKPAVDPTNTHPMVTRGKTGNLKPKVFLAHK------------EP 928

Query: 1055 DSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRH 1234
             SV+ A   P W  AM+ EY+AL+ N TW LVP  +H   +  KWVFRIK N DGS+ ++
Sbjct: 929  HSVKHALTDPNWLKAMEAEYSALLHNKTWSLVPLPAHRRAIGCKWVFRIKENPDGSINKY 988

Query: 1235 KARLVAKGFQQQPGID 1282
            KARLVAKGF Q+PG D
Sbjct: 989  KARLVAKGFSQEPGFD 1004


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  313 bits (802), Expect = 2e-92
 Identities = 183/436 (41%), Positives = 233/436 (53%), Gaps = 9/436 (2%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D ++ FTWIYPLK KS+   +F  F+ +VE +  TKIK++QSDWGGEYRS    L T GI
Sbjct: 503  DAFSKFTWIYPLKSKSDTLSVFQQFKAMVELQLNTKIKSIQSDWGGEYRSFTAFLATHGI 562

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG  ERKHRHIV++G+TLL  AS+PL +W  AF+T+ +LIN L T +L
Sbjct: 563  THRLICPHTHHQNGVVERKHRHIVDIGITLLHHASLPLTFWDYAFSTAVYLINRLPTASL 622

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            N   P                 GCACFP ++ Y  HKLDFRS +CVF+GYS +HKGYKCL
Sbjct: 623  NFDIPFTVLFKQTPDYKFLKTFGCACFPFLRPYTTHKLDFRSQECVFLGYSNSHKGYKCL 682

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGF-HTS--------FFKNSESFSQSSNIQYSHWLPFL 694
              SGKIYI++ V FNE  FP+   F HTS        +F  +   S   +   +  LPF+
Sbjct: 683  SASGKIYISKDVIFNETRFPYLDLFQHTSTPVPSPSQYFTLNPDLSPPCSHTTASSLPFI 742

Query: 695  SHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVIN 874
              S                   +   N+ S S P++SQ                 +  IN
Sbjct: 743  PVSE--------------TSNHSGQDNILSVS-PTVSQFNSTPSSPVSSTPTNTVSRTIN 787

Query: 875  DXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITP 1054
            +                          M TRSK GI+KPK   S  L +          P
Sbjct: 788  N------------------------HSMQTRSKSGIYKPKMPPSLFLAHS--------EP 815

Query: 1055 DSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRH 1234
             +V+QA   P+W  AM  EY+AL++NHTWDLVP  S+   V  KWVFR+K N+DGS+ + 
Sbjct: 816  KNVKQALSDPDWFSAMKQEYSALLQNHTWDLVPLPSNRQAVGCKWVFRVKENADGSINKF 875

Query: 1235 KARLVAKGFQQQPGID 1282
            KARLVAKGF Q  G D
Sbjct: 876  KARLVAKGFHQVHGFD 891


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  307 bits (787), Expect = 3e-91
 Identities = 167/427 (39%), Positives = 231/427 (54%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D +T FTWIY LK K++  ++F  F  +V+ ++   IK LQ+DWGGEYRS    L  +GI
Sbjct: 249  DAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGI 308

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG +ERKHRHIVE+GLTL+ QA +P+Q+W  +F T+ +LIN L + ++
Sbjct: 309  QHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSI 368

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
             +  P                 GC+CFPH++ YN+HKL FRS +CVF+GYS +HKGYKCL
Sbjct: 369  QNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCL 428

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
               G++YI++ V FNE +FP+   F +S  K S+S    S     +  P  +H++++   
Sbjct: 429  AADGRLYISKDVVFNETKFPYKDLFSSS--KASDSQLPISVPLTINPTPTPTHATRLTSP 486

Query: 722  XXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXX 901
                           P   +  SP +LS                  +P+I+         
Sbjct: 487  NPPTTSPSLISDSYSPNTAAHTSPSTLS-------IPTSSNLEPSSSPIIH--------- 530

Query: 902  XXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLS 1081
                              M TR+K GI KP+   + LL        T + P + +QA  +
Sbjct: 531  ------------PHNVHPMTTRAKDGIVKPRLQPTLLL--------TQVEPKTTKQALSN 570

Query: 1082 PEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGF 1261
            P W  AM  EYNAL+ N+TW LVP   H   +  KWVFR+K N +GSVQ++KARLVAKGF
Sbjct: 571  PTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGF 630

Query: 1262 QQQPGID 1282
             QQ G D
Sbjct: 631  NQQFGFD 637


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  304 bits (778), Expect = 4e-90
 Identities = 174/427 (40%), Positives = 231/427 (54%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D Y+ FTWIY LK KS+   IF  F+ +VE +F   +K LQ+DWGGE+R     L+ LG+
Sbjct: 642  DAYSRFTWIYLLKSKSDAFIIFKQFKAMVELQFGHSLKALQTDWGGEFRPFTKFLKDLGV 701

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG  ERKHRHIV++GLTLL+QAS+PL YW  AF T+ +LIN L +  L
Sbjct: 702  IHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQASLPLSYWDYAFLTAVYLINRLPSAPL 761

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            + + P                 GCACFP ++ YN HKLD+RS +C+F+GYSP+HKGY+CL
Sbjct: 762  DFKIPYTLLFHQDPDYKFLKVFGCACFPLLRPYNTHKLDYRSHECLFLGYSPSHKGYRCL 821

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
             P+G+++I++ V FNE  FPF   F +    +S   S+SS +  S  +   SHS      
Sbjct: 822  SPNGRLFISKDVIFNESRFPFIDLFTS---PHSVVPSKSSAVTLSPLVHHPSHSPS---- 874

Query: 722  XXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXX 901
                         +P  ++ +  PPS S                   P            
Sbjct: 875  ----------PTSSPSPSIPNSPPPSASSPVVSPTSPPVTSPESLSPP---------NAP 915

Query: 902  XXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLS 1081
                              MLTR+K G  +P+     LL        T I P SV+QA   
Sbjct: 916  PIPPKAKPVVHKPSNLHPMLTRAKDGFTQPRLEPRLLL--------THIEPASVKQALQV 967

Query: 1082 PEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGF 1261
            PEWK AM  EY+AL+ N+TW LVP  S  + +  KWVFR+K NSDG++ ++KARLVAKGF
Sbjct: 968  PEWKTAMQAEYDALLANNTWTLVPLPSDRSSIGCKWVFRVKQNSDGTLNKYKARLVAKGF 1027

Query: 1262 QQQPGID 1282
             Q+ GID
Sbjct: 1028 HQRHGID 1034


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  307 bits (787), Expect = 5e-90
 Identities = 167/427 (39%), Positives = 231/427 (54%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D +T FTWIY LK K++  ++F  F  +V+ ++   IK LQ+DWGGEYRS    L  +GI
Sbjct: 584  DAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGI 643

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG +ERKHRHIVE+GLTL+ QA +P+Q+W  +F T+ +LIN L + ++
Sbjct: 644  QHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSI 703

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
             +  P                 GC+CFPH++ YN+HKL FRS +CVF+GYS +HKGYKCL
Sbjct: 704  QNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCL 763

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
               G++YI++ V FNE +FP+   F +S  K S+S    S     +  P  +H++++   
Sbjct: 764  AADGRLYISKDVVFNETKFPYKDLFSSS--KASDSQLPISVPLTINPTPTPTHATRLTSP 821

Query: 722  XXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXX 901
                           P   +  SP +LS                  +P+I+         
Sbjct: 822  NPPTTSPSLISDSYSPNTAAHTSPSTLS-------IPTSSNLEPSSSPIIH--------- 865

Query: 902  XXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLS 1081
                              M TR+K GI KP+   + LL        T + P + +QA  +
Sbjct: 866  ------------PHNVHPMTTRAKDGIVKPRLQPTLLL--------TQVEPKTTKQALSN 905

Query: 1082 PEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGF 1261
            P W  AM  EYNAL+ N+TW LVP   H   +  KWVFR+K N +GSVQ++KARLVAKGF
Sbjct: 906  PTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGF 965

Query: 1262 QQQPGID 1282
             QQ G D
Sbjct: 966  NQQFGFD 972


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  305 bits (780), Expect = 2e-89
 Identities = 178/431 (41%), Positives = 221/431 (51%), Gaps = 4/431 (0%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D ++ +TWIYPLK K+E   +F  F+ + E +F TKIK++QSDWGGEYR+    L T GI
Sbjct: 447  DAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQSDWGGEYRAFTSFLATNGI 506

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG  ERKHRHIVE+GLTLL  AS+PL++W  AF T+ +LIN L +  L
Sbjct: 507  QHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFWDFAFTTAVYLINRLPSAAL 566

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            N   P                 GCACFP ++ Y  HKL+FRS +CVF+GYS +HKGYKCL
Sbjct: 567  NFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPYASHKLNFRSQECVFLGYSNSHKGYKCL 626

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
              SG+IYI++ V FNE  FP++  F  S  +N       S  QY +  P LS        
Sbjct: 627  SSSGRIYISKDVIFNEHRFPYTDLFQPSLTQN------VSPCQYFNLNPDLS-------- 672

Query: 722  XXXXXXXXXXXXEAPPRNLS---SDSPPSLSQ-GXXXXXXXXXXXXXXXXAPVINDXXXX 889
                          PP   S   S  PP  SQ G                +P   +    
Sbjct: 673  --------------PPCTTSTVLSQQPPLPSQIGDSSVSIIPSVSSSQNVSPSSPESSSQ 718

Query: 890  XXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQ 1069
                                  M TRSK G   P+ + S  L +          P +V+Q
Sbjct: 719  NVSSPTSSTAPASIPRTINNHPMQTRSKSGFHNPRIHPSLFLAHS--------EPKTVKQ 770

Query: 1070 AFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLV 1249
            A   P W  AM  EYNAL+ NHTWDLV   S    V  KWVFR+K N+DGS+ + KARLV
Sbjct: 771  ALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKWVFRVKENADGSIDKLKARLV 830

Query: 1250 AKGFQQQPGID 1282
            AKGF Q  G D
Sbjct: 831  AKGFHQVHGFD 841


>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1358

 Score =  305 bits (780), Expect = 4e-89
 Identities = 178/431 (41%), Positives = 221/431 (51%), Gaps = 4/431 (0%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D ++ +TWIYPLK K+E   +F  F+ + E +F TKIK++QSDWGGEYR+    L T GI
Sbjct: 526  DAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQSDWGGEYRAFTSFLATNGI 585

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG  ERKHRHIVE+GLTLL  AS+PL++W  AF T+ +LIN L +  L
Sbjct: 586  QHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFWDFAFTTAVYLINRLPSAAL 645

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            N   P                 GCACFP ++ Y  HKL+FRS +CVF+GYS +HKGYKCL
Sbjct: 646  NFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPYASHKLNFRSQECVFLGYSNSHKGYKCL 705

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
              SG+IYI++ V FNE  FP++  F  S  +N       S  QY +  P LS        
Sbjct: 706  SSSGRIYISKDVIFNEHRFPYTDLFQPSLTQN------VSPCQYFNLNPDLS-------- 751

Query: 722  XXXXXXXXXXXXEAPPRNLS---SDSPPSLSQ-GXXXXXXXXXXXXXXXXAPVINDXXXX 889
                          PP   S   S  PP  SQ G                +P   +    
Sbjct: 752  --------------PPCTTSTVLSQQPPLPSQIGDSSVSIIPSVSSSQNVSPSSPESSSQ 797

Query: 890  XXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQ 1069
                                  M TRSK G   P+ + S  L +          P +V+Q
Sbjct: 798  NVSSPTSSTAPASIPRTINNHPMQTRSKSGFHNPRIHPSLFLAHS--------EPKTVKQ 849

Query: 1070 AFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLV 1249
            A   P W  AM  EYNAL+ NHTWDLV   S    V  KWVFR+K N+DGS+ + KARLV
Sbjct: 850  ALADPNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKWVFRVKENADGSIDKLKARLV 909

Query: 1250 AKGFQQQPGID 1282
            AKGF Q  G D
Sbjct: 910  AKGFHQVHGFD 920


>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 839

 Score =  295 bits (754), Expect = 4e-88
 Identities = 171/429 (39%), Positives = 217/429 (50%), Gaps = 2/429 (0%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D +T FTWI+ LK K+   D+F  F  +V  +F+  IK +Q+DWGGE+RS    L   GI
Sbjct: 235  DAHTRFTWIFMLKSKAHTLDVFKQFHAMVRNQFQLPIKAIQTDWGGEFRSFTSYLAQHGI 294

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
            H R  CPHTH QNG  ERKHRHIVE+GLTLL QA +P+ +W  AF TS +LIN L + ++
Sbjct: 295  HHRIICPHTHHQNGVVERKHRHIVELGLTLLAQAHLPMHFWDYAFLTSVYLINRLPSSSI 354

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
                P                 GC+CFPH++ YN+ KL FRS +CVF+GYS +HKGYKCL
Sbjct: 355  QQDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQFRSQECVFLGYSTSHKGYKCL 414

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPF--LSHSSQVQ 715
             PSG+++I++ V F E  FP+ + F  S    S S      +  +   P    SH+S   
Sbjct: 415  APSGRVFISKDVIFCENRFPYPTLFSPSTPSPSSSSITVPLVVTNPQAPITSTSHTSPSS 474

Query: 716  EXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXX 895
                             P   +S S P+                    AP IN       
Sbjct: 475  PIFTDSSPSQPSHTSPTPNPSASTSLPT-----------------HVEAPPIN------- 510

Query: 896  XXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAF 1075
                                M TR+K GI KP+   + LL        T   P + +QA 
Sbjct: 511  -----------------LHPMTTRAKAGIVKPRLQPTLLL--------THFEPKNTKQAL 545

Query: 1076 LSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAK 1255
             S  W  AM  EYNAL+ N TW LVP  SH   +  KWVFRIK N DG+V +HKARLVAK
Sbjct: 546  ASDTWLAAMKQEYNALMANGTWTLVPLPSHRTAIGCKWVFRIKENPDGTVHKHKARLVAK 605

Query: 1256 GFQQQPGID 1282
            GF QQ G D
Sbjct: 606  GFHQQFGFD 614


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  296 bits (759), Expect = 5e-86
 Identities = 171/440 (38%), Positives = 221/440 (50%), Gaps = 13/440 (2%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D  T FTWIY LK K++    F  F  L++ +F+T IK LQSDWGGE+RS   +L +LGI
Sbjct: 633  DACTKFTWIYFLKSKADALAAFKQFNTLIQNQFQTTIKALQSDWGGEFRSFTTMLSSLGI 692

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHT  QNG  ERKHR IVEMGLT+++QAS+PL+YW  +F  S FLIN L +  L
Sbjct: 693  KHRLTCPHTSHQNGIVERKHRQIVEMGLTIMSQASIPLKYWDHSFTQSVFLINRLPSSAL 752

Query: 362  -NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKC 538
              H SP  A              GC+CFPH++ YN+HK   RS++CV++G SP HKG+KC
Sbjct: 753  PTHTSPYHALYNVIPSYTDIKIFGCSCFPHLRPYNKHKFQLRSSQCVYLGVSPQHKGHKC 812

Query: 539  LHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQV-- 712
            L   G+IYI++ V F+E  FP+S  F T    +S   + SS+  Y   +P    SSQ   
Sbjct: 813  LSADGRIYISKDVKFDELTFPYSKLFKTCVASSSSCDTPSSS--YPATIPIYDLSSQTNT 870

Query: 713  ----------QEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXA 862
                                      +P    SS++ PS S                  A
Sbjct: 871  TPTHSLNVSNHSNFSNNPSISPNHTNSPTSTSSSNTSPSPSPPPSNIQPPDDNPPPINNA 930

Query: 863  PVINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYT 1042
            P                              M+TR K G  KPK +L            T
Sbjct: 931  PA---------WIPTPTPEPITVVSNHNNHPMVTRGKTGNLKPKAFL------------T 969

Query: 1043 TITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGS 1222
             + P +V+ A    +W  AM DEY+AL+ N TWDLVP   H   +  +W+FR+K N DGS
Sbjct: 970  QLEPKTVRHALADSKWLAAMKDEYHALMHNKTWDLVPLPPHKKAIGCRWIFRVKENPDGS 1029

Query: 1223 VQRHKARLVAKGFQQQPGID 1282
            V + KARLVAKGF Q  G D
Sbjct: 1030 VNKFKARLVAKGFHQIAGYD 1049


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  296 bits (758), Expect = 6e-86
 Identities = 165/427 (38%), Positives = 222/427 (51%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D Y+ FTWIY LK KS+   IF  F+++VE +F   +K LQ+DWGGE+R     L  LG+
Sbjct: 650  DAYSKFTWIYLLKSKSDALLIFKQFKSMVELQFGHPLKALQTDWGGEFRPFTKFLTELGV 709

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG  ERKHRHIV++GLTLL+QA++P+ +W  AF T+ +LIN L + ++
Sbjct: 710  VHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQATLPITFWDYAFPTAVYLINRLPSSSI 769

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            N Q+P                 GCACFP ++ Y+ HKL+FRS +C+F+GYSP+HKGY+CL
Sbjct: 770  NFQTPYFLLFKQHPDYHFLKVFGCACFPLLRPYHNHKLEFRSQECLFLGYSPSHKGYRCL 829

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
             PSG++Y+++ V FNE  FP+   F  S      S S  S    S  LP L     +   
Sbjct: 830  SPSGRLYVSKDVLFNESRFPYKELFPIS------SGSSHSPPSKSFKLPPLPTFPSITTD 883

Query: 722  XXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXX 901
                         +PP  ++  SPP+                     P  +         
Sbjct: 884  ITSPLPPTAPHISSPPTPINDPSPPN-----SPLSATASDQSSPLSTPSPSTASSTSHHV 938

Query: 902  XXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLS 1081
                              M TR+K G  +PK  ++               P SV+QA L 
Sbjct: 939  SIPPRAVPVPIIPVNAHNMQTRAKSGFKQPKLLVAH------------SEPKSVKQALLD 986

Query: 1082 PEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGF 1261
            P W  AM  EY+AL+ N+TW LVP       +  KWVFRIK N DG+V ++KARLVAKGF
Sbjct: 987  PSWHAAMQTEYDALLNNNTWTLVPLPPDRQAIGCKWVFRIKENPDGTVNKYKARLVAKGF 1046

Query: 1262 QQQPGID 1282
             Q+ G D
Sbjct: 1047 HQRQGFD 1053


>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1054

 Score =  291 bits (746), Expect = 1e-85
 Identities = 174/449 (38%), Positives = 229/449 (51%), Gaps = 22/449 (4%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D  T FTW+Y LK KS+    F  F +LV+ +F ++IK +QSDWGGE+RS++ +L  LGI
Sbjct: 324  DACTKFTWLYFLKRKSDAISAFTQFHSLVQTQFSSRIKAIQSDWGGEFRSISTLLTNLGI 383

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHT  QNG  ER+HR IVE GLTLL  A+MPL++W  +F T+  ++N L T +L
Sbjct: 384  QHRLTCPHTSHQNGTVERRHRSIVETGLTLLKHANMPLEFWDHSFTTAVSVLNKLPTASL 443

Query: 362  -NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKC 538
             N+ SP  A              GCACFPH++ YN HKL+FRSTKC ++G SP HKG+KC
Sbjct: 444  PNYSSPFYALHHYEPDYKSIRVFGCACFPHLRPYNNHKLEFRSTKCTYLGPSPLHKGHKC 503

Query: 539  LHPSGKIYIAQSVTFNECEFPF------------SSGFH------TSFFKNSE---SFSQ 655
            +   G++YI++ V FNE EFPF            SS  H      T FF N+    S S 
Sbjct: 504  MSSDGRVYISKDVVFNETEFPFSSLNSSSGTTSVSSPSHFPSVIPTPFFPNTPLPVSVSL 563

Query: 656  SSNIQYSHWLPFLSHSSQVQEXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXX 835
            S ++  S   P  S S+ +Q                PP     D  P++           
Sbjct: 564  SESVSPS---PVNSTSTPIQPVEVTSPLPTGTPPSVPP-----DMQPNIPS--------- 606

Query: 836  XXXXXXXXAPVINDXXXXXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLL 1015
                     P I+                           M+TR K G  KPK +L+   
Sbjct: 607  --RSDTTPLPPISKPLVPHTVNSHP---------------MVTRGKTGNLKPKVFLAHS- 648

Query: 1016 KNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVF 1195
                        P +V+QA   P+W  AM  EY+AL+ N TW LVP  +H   +  KWVF
Sbjct: 649  -----------EPSNVKQALADPQWLTAMKAEYSALMNNQTWSLVPLPAHRRAIGCKWVF 697

Query: 1196 RIKYNSDGSVQRHKARLVAKGFQQQPGID 1282
            RIK N DGSV ++KARLVAKG+ Q+ G D
Sbjct: 698  RIKENPDGSVNKYKARLVAKGYSQEQGFD 726


>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  278 bits (712), Expect = 7e-85
 Identities = 162/427 (37%), Positives = 218/427 (51%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D +T F WI+  K K+   D+F  F  +++ +F+  IK +Q+DWGGE+RS    L   GI
Sbjct: 124  DAHTRFIWIFLFKSKAHTLDVFKQFHAMIQNQFQLPIKAIQTDWGGEFRSFTSYLAQNGI 183

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHTH QNG  ERKHRHIVE+GLT+L QA +P+Q+W  AF TS +LIN L + ++
Sbjct: 184  QHRLICPHTHHQNGIVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSI 243

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
             H  P                 GC+CFPH++ YN++KL  RS +CVF+GYS +HKGYKCL
Sbjct: 244  QHDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQLRSQECVFLGYSTSHKGYKCL 303

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQEX 721
             P+G+I+I++ V F E  FP+      S F  S +   +S+I     +P +  S Q    
Sbjct: 304  APTGRIFISKDVIFCETRFPY-----PSLFPASATNPPTSSIP----VPLVITSLQ---- 350

Query: 722  XXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXXXX 901
                          PP  + +DSPP +S                     ++         
Sbjct: 351  --------------PP--MPTDSPPLISPNTSPTTSNSTLSSSSATTSSVS--ASTLLPT 392

Query: 902  XXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLS 1081
                              M TR+K GI KP    + LL        T   P S +QA  +
Sbjct: 393  SSTSLSTHDTTPITNIHSMTTRAKAGIVKPCLQPTLLL--------THTEPKSTKQALAN 444

Query: 1082 PEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGF 1261
              W  AM  EYNAL+ N TW LV    +   +  KWVFRIK NSDG+V ++KARLVAKGF
Sbjct: 445  DTWLAAMKQEYNALLNNGTWTLVSLPPNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGF 504

Query: 1262 QQQPGID 1282
             +Q G D
Sbjct: 505  HKQFGSD 511


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  290 bits (742), Expect = 8e-84
 Identities = 166/432 (38%), Positives = 218/432 (50%), Gaps = 5/432 (1%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D YT FTWIY LK KS+    F  F+ L++ +F+  IK +QSDWGGE+R+   +L  LGI
Sbjct: 582  DTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGI 641

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CPHT  QNG  ERKHRHIVEMGLTLL+ A++PL++W  +F  + +LIN L +  +
Sbjct: 642  QHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAI 701

Query: 362  N-HQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKC 538
               QSP  A              GC CFPH++ YN HKL +RS+ CV++G SP HKG+KC
Sbjct: 702  PLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQYRSSPCVYLGVSPQHKGHKC 761

Query: 539  LHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQE 718
            L  +G+IYI++ V F+E +FP+ S F +S          SSN   SH  P       V  
Sbjct: 762  LDATGRIYISKDVIFHESQFPYLSLFASS----------SSNSHMSHTYPAQILFPSVNT 811

Query: 719  XXXXXXXXXXXXXEAPPRNLS----SDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXX 886
                           PP  +S    S SP S +                  +P +     
Sbjct: 812  NTNLHPETSSAPDTDPPDPVSPLPGSVSPSSSTPLTISQINSLISQPISTTSPSV---PT 868

Query: 887  XXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQ 1066
                                   M+TR+K G  KPK ++++L             P SV+
Sbjct: 869  PPADPVPAIRPASQNISHHNAHPMITRAKTGNLKPKVFVAAL------------EPKSVK 916

Query: 1067 QAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARL 1246
             A   P W  AM  EY AL+ N TW LVP   H   +  KW+FR+K N DG+V + KARL
Sbjct: 917  SALNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARL 976

Query: 1247 VAKGFQQQPGID 1282
            VAKGF Q  G D
Sbjct: 977  VAKGFLQTAGFD 988


>dbj|GAU37351.1| hypothetical protein TSUD_395330 [Trifolium subterraneum]
          Length = 1216

 Score =  283 bits (723), Expect = 1e-81
 Identities = 164/432 (37%), Positives = 214/432 (49%), Gaps = 5/432 (1%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            D +T FTWIY LK K +    F  F  LV+ +F+T IK LQSDWGGE+R    +L  LGI
Sbjct: 488  DTFTKFTWIYFLKTKGDALKAFSQFLALVQNQFQTSIKALQSDWGGEFRPFTALLNELGI 547

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
            H R  CPHT  QNG  ERKHRHIVE GLTLL+ AS+PL++W  +F  S  LIN L +  L
Sbjct: 548  HHRLTCPHTSHQNGTVERKHRHIVETGLTLLSHASLPLKFWDHSFTQSVHLINKLPSSAL 607

Query: 362  -NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKC 538
             N QSP +A              GC CFPH++ YN+HKL +RS+  V++G SP HKG+KC
Sbjct: 608  SNFQSPHQALYNTCPDYTQLKSFGCLCFPHLRPYNKHKLQYRSSPYVYLGISPQHKGHKC 667

Query: 539  LHPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQE 718
            L  SG+IYI++ V F+E ++P+ S F      +S S + S+   Y   + F +H+     
Sbjct: 668  LDASGRIYISKDVIFHESKYPYQSMF------SSSSQTPSNTSSYPAHILFPAHNDNTLP 721

Query: 719  XXXXXXXXXXXXXEAPPRNLSSD----SPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXX 886
                          +P +   SD      P                      PV      
Sbjct: 722  STPTEVSQQSVLPPSPQQQSPSDPVTQHTPIFLPSSSSTPLSVDQINSIISQPV--SSAS 779

Query: 887  XXXXXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQ 1066
                                   M+TR K G  KPK +L+ L             P +V+
Sbjct: 780  PSLASPLNPFAIPPVLSNHNNHSMITRGKTGSLKPKIFLAEL------------EPKTVR 827

Query: 1067 QAFLSPEWKHAMDDEYNALIRNHTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARL 1246
             A   P+W  AM  EY AL+ N TW LVP       +  KW+FR+K N DG+V ++KARL
Sbjct: 828  CALNDPKWNKAMQAEYQALMDNKTWTLVPLPLDRKAIGCKWIFRVKENPDGTVNKYKARL 887

Query: 1247 VAKGFQQQPGID 1282
            V KGF Q  G D
Sbjct: 888  VVKGFLQTAGFD 899


>ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178344 [Citrus sinensis]
          Length = 877

 Score =  256 bits (655), Expect = 1e-73
 Identities = 148/366 (40%), Positives = 185/366 (50%), Gaps = 3/366 (0%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            DDYT +TWI+PL  KS+    F+ F+N++E     +IK LQ+DWGGE+R     L   GI
Sbjct: 543  DDYTRYTWIFPLTTKSKTLSAFIDFKNMIENCLNLRIKCLQTDWGGEFRPFVSYLSEQGI 602

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
             FRHPCP+ H QN K ERKHRHIVE GLTLL QA +PL++WW AF+T+ +LIN L TP L
Sbjct: 603  QFRHPCPYIHHQNRKIERKHRHIVETGLTLLAQAHLPLKFWWNAFHTATYLINRLPTPIL 662

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            N++SP E               GC+C+P+++ YN HKL FRS +CVF+GYS  HKGY+CL
Sbjct: 663  NNKSPFEKLFHKLPDYTMMKVFGCSCYPYLRPYNHHKLQFRSERCVFLGYSSLHKGYQCL 722

Query: 542  HPSGKIYIAQSVTFNECEFPFSSG--FHTSFFKNSESFSQSSNIQYSHWLPFLSHSSQVQ 715
            H SG++YI+  VTF+E  FPF S   F T    +S   S SSN   S  L      SQ  
Sbjct: 723  HLSGRVYISNHVTFDESFFPFQSADKFSTKSCSDSLHESTSSNPLVSFTL------SQTA 776

Query: 716  EXXXXXXXXXXXXXEAPPRNLSSDSPPSLSQGXXXXXXXXXXXXXXXXAPVINDXXXXXX 895
            E                 R+LS  +PP+                       IN       
Sbjct: 777  EQLG--------------RSLSQSTPPATDLPSNSNLSSSENHLLSHTPSPINQ-----Q 817

Query: 896  XXXXXXXXXXXXXXXXXXXXMLTRSKHGIFKP-KTYLSSLLKNPTTPAYTTITPDSVQQA 1072
                                M TRSK GIFKP K YL      PT P        +V  A
Sbjct: 818  SSSQLLHHLSPPSQPIIGHPMTTRSKMGIFKPKKAYLVECNPKPTEPL-------TVSAA 870

Query: 1073 FLSPEW 1090
               P+W
Sbjct: 871  LNDPKW 876


>ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177515 [Citrus sinensis]
          Length = 1143

 Score =  259 bits (661), Expect = 3e-73
 Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            DD T FTWI+PLK K E   +F  F+  +E++F   IK LQSDWGGE+RS    L   GI
Sbjct: 623  DDCTRFTWIFPLKTKDETLPVFKIFKTQIEKQFSRPIKCLQSDWGGEFRSFVNYLLAEGI 682

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
             FRH CP+TH QNG  ERKHRHI E+GLTLL QA+MPL++WW++F+T+ ++IN L TP L
Sbjct: 683  QFRHLCPYTHNQNGLVERKHRHITELGLTLLAQAAMPLKFWWDSFHTATYIINRLPTPVL 742

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            + +SP E+              GC+CF  +++YN+HK  F ++KCVF+GYSP HKGYKCL
Sbjct: 743  SIKSPYESLFQLSPDYKFLRVFGCSCFLFLREYNKHKFQFHTSKCVFLGYSPLHKGYKCL 802

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGFHTSFFKNSESFSQSSNIQYS---HWLPFLSHSSQ 709
            HPSG+ YIA  V F+E  FP+SS FH      S S +QSS+ QY+   H+   +S+S+Q
Sbjct: 803  HPSGRTYIASHVLFDESSFPYSSLFHV-----SSSGNQSSDFQYNLLKHFSVPVSNSNQ 856


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  253 bits (645), Expect = 5e-71
 Identities = 114/205 (55%), Positives = 146/205 (71%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            DD++ FTWIYPLK KS+V   F+ F+NLVE +F  +IKTLQ D GGE++SL+ +L   GI
Sbjct: 450  DDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQCDGGGEFKSLSKVLIKTGI 509

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
              R  CP+T  QNG++ERKHRH+VE GLTLL QA MPL YWWEAF+T+ FLIN L T  +
Sbjct: 510  QLRESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYWWEAFSTAVFLINRLPTQVI 569

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
             ++SP +               GCAC+P +K YNQHKL F +TKCVF+GYS +HKGYKCL
Sbjct: 570  KNKSPYQQLFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFHTTKCVFLGYSGSHKGYKCL 629

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGF 616
            + +G+I+I++ V FNE  FPF  GF
Sbjct: 630  NSTGRIFISRHVVFNEHHFPFHDGF 654



 Score =  105 bits (263), Expect = 1e-20
 Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
 Frame = +2

Query: 956  MLTRSKHGIFKPKT-YLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRN 1132
            M TRSK GI KPK  Y+ ++ K           P++  +A  +PEWK AM  E+ AL+ N
Sbjct: 739  MTTRSKMGIIKPKKPYVGAVEKTLEEQE-----PETTYEALENPEWKKAMIAEFKALMMN 793

Query: 1133 HTWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGFQQQPGID 1282
             TW LVP Q   NI+D KWVF+ KY +DG+++R KARLVAKGFQQ  G+D
Sbjct: 794  KTWTLVPYQGQKNIIDCKWVFKTKYKADGTIERRKARLVAKGFQQTLGLD 843


>dbj|GAU17915.1| hypothetical protein TSUD_330400, partial [Trifolium subterraneum]
          Length = 1021

 Score =  242 bits (618), Expect = 1e-67
 Identities = 107/205 (52%), Positives = 141/205 (68%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            DD+T FTWIYPLK KS+    F+ F+N+VE +F  +IKT+Q D GGEY+++       GI
Sbjct: 425  DDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFNKRIKTIQCDGGGEYKAVQKHAIEAGI 484

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
             FR  CP+T  QNG++ERKHRHI E GLTLL QA MPL YWWEAF+T+ +LIN L +P  
Sbjct: 485  QFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFSTAVYLINRLPSPVT 544

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            +++SP                 GCAC+P +K YN+HKL F +TKCVF+GYS +HKGYKC+
Sbjct: 545  HNESPYSLLHKKEPDYNSLKPFGCACYPCLKPYNKHKLQFHTTKCVFLGYSNSHKGYKCV 604

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGF 616
            +  G+++I++ V FNE  FPF  GF
Sbjct: 605  NSHGRVFISRHVVFNEDHFPFHDGF 629



 Score =  107 bits (266), Expect = 5e-21
 Identities = 53/108 (49%), Positives = 69/108 (63%)
 Frame = +2

Query: 956  MLTRSKHGIFKPKTYLSSLLKNPTTPAYTTITPDSVQQAFLSPEWKHAMDDEYNALIRNH 1135
            M TRSK GI KPK     L +N          P + Q+A   PEWK AM  E+ AL+ N 
Sbjct: 704  MRTRSKDGIRKPKLPYIGLAENHIEEK----EPGNAQEALRRPEWKEAMHKEFQALMTNQ 759

Query: 1136 TWDLVPRQSHMNIVDNKWVFRIKYNSDGSVQRHKARLVAKGFQQQPGI 1279
            TW L+P Q   +I+D++WVF+IKY +DG+++R KARLVAKGFQQ  G+
Sbjct: 760  TWTLIPYQDQESIIDSEWVFKIKYKADGTIERRKARLVAKGFQQTAGL 807


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
            [Trifolium pratense]
          Length = 835

 Score =  239 bits (610), Expect = 2e-67
 Identities = 107/205 (52%), Positives = 139/205 (67%)
 Frame = +2

Query: 2    DDYTNFTWIYPLKLKSEVKDIFLHFQNLVERKFETKIKTLQSDWGGEYRSLAPILQTLGI 181
            DD+T FTWIYPLK KS+    F+ F+N+VE +F  KIKT+Q D GGEY+ +       GI
Sbjct: 526  DDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFSKKIKTIQCDGGGEYKPVQKHAIEAGI 585

Query: 182  HFRHPCPHTHPQNGKSERKHRHIVEMGLTLLTQASMPLQYWWEAFNTSAFLINHLSTPTL 361
             FR  CP+T  QNG++ERKHRHI E GLTLL QA MPL YWWEAF+T+ +LIN L +   
Sbjct: 586  QFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFSTAVYLINRLPSSVT 645

Query: 362  NHQSPIEAXXXXXXXXXXXXXXGCACFPHIKDYNQHKLDFRSTKCVFIGYSPNHKGYKCL 541
            +++SP                 GCAC+P +K YN+HKL F +T+CVF+GYS +HKGYKC+
Sbjct: 646  HNKSPYSLLHKREPDYNSLKPFGCACYPFLKPYNKHKLQFHTTRCVFLGYSNSHKGYKCV 705

Query: 542  HPSGKIYIAQSVTFNECEFPFSSGF 616
            +  G+I+I++ V FNE  FPF  GF
Sbjct: 706  NSHGRIFISRHVVFNEDHFPFHDGF 730