BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00026702
         (956 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   220   7e-61
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   209   5e-57
gb|PNX81106.1| glutamate receptor [Trifolium pratense]                202   6e-57
gb|PNX78574.1| retrovirus-related Pol polyprotein from transposo...   202   6e-56
gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposo...   196   1e-54
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   202   1e-54
gb|KYP78000.1| Retrovirus-related Pol polyprotein from transposo...   196   2e-54
gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygro...   197   6e-54
gb|KYP44478.1| Retrovirus-related Pol polyprotein from transposo...   195   7e-54
ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177...   198   3e-53
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]   197   4e-53
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   196   2e-52
emb|CAB43904.1| putative protein [Arabidopsis thaliana] >gi|7269...   194   9e-52
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   193   1e-51
dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subt...   192   2e-51
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   192   2e-51
gb|PKU71759.1| Retrovirus-related Pol polyprotein from transposo...   187   5e-51
gb|KYP66597.1| Retrovirus-related Pol polyprotein from transposo...   186   8e-51
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   190   1e-50
gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposo...   187   2e-50

>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  220 bits (560), Expect = 7e-61
 Identities = 125/324 (38%), Positives = 175/324 (54%), Gaps = 16/324 (4%)
 Frame = +2

Query: 29   RPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGS-QAYYS 205
            +P CQLC K GH+ ++CY RFD +FQ                      SS N S +AYYS
Sbjct: 307  KPACQLCGKIGHVVAQCYYRFDHTFQ-----------------VPQNLSSRNSSPRAYYS 349

Query: 206  ---------TTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFIS 358
                      T++  SD++WY DSGA+NH+T +P NL    E+ G N + +GNG  L I 
Sbjct: 350  FSPQVNGVIPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIK 409

Query: 359  HYGSSSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSK 538
            H G S   +  +   L+LN+LL VP ITKNLLS+S+  KDN VF EF+ D C VK+Q ++
Sbjct: 410  HIGQSEFLSPFSSKPLLLNHLLHVPSITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQ 469

Query: 539  RELLRGVLSEGLYRL---QLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXX 709
              L+ G + +GLY      L   PT S + S  +++      + F               
Sbjct: 470  AVLMVGKVRDGLYAFDSSHLALRPTQSLSKSPSVVA------SSFSSKVCTTSLSSTFDL 523

Query: 710  WHMRLGHPNNNVMRHMLSN---KELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEII 880
            WH RLGHP+   ++++LS      +     +FC++C +GK     +S S T  TKPLE+I
Sbjct: 524  WHKRLGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELI 583

Query: 881  HSDVWGPAPILSKDGFRYYVHFVD 952
            H D+WGP  +LS  G+RYY+HFVD
Sbjct: 584  HLDLWGPTLVLSNSGYRYYIHFVD 607


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
            [Trifolium pratense]
          Length = 1242

 Score =  209 bits (531), Expect = 5e-57
 Identities = 119/313 (38%), Positives = 170/313 (54%), Gaps = 4/313 (1%)
 Frame = +2

Query: 29   RPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYST 208
            RP+CQ+C K GH A++CY RFD S+  +                 +  + G GS + +  
Sbjct: 260  RPICQICGKFGHTAAQCYYRFDKSYTEK-----------------NHYAEGEGSHSAFVA 302

Query: 209  TNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 388
            +     D  WY DSGA+NH+T     L    E  G N LL+GNG+ L I   GS+ L + 
Sbjct: 303  SPYHGQDYEWYFDSGASNHVTHQSGQLQDLNENNGKNSLLVGNGEKLKILASGSTKLNDV 362

Query: 389  HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSE 568
            +      L N+L VP+ITKNLLS+S+LT DN   VEF  +YC VK++ + + LL+G L +
Sbjct: 363  N------LRNVLYVPEITKNLLSVSKLTIDNNALVEFDENYCYVKDKLTGKALLKGRLKD 416

Query: 569  GLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVM 748
            GLY+L  ++ P T+            K P  +               WH +LGHPNN V+
Sbjct: 417  GLYQLSANKEPPTN------------KDPCAY---------ISLKEIWHRKLGHPNNKVL 455

Query: 749  RHMLSNKELLSTAPS----FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILS 916
              +L +  +   +PS    FC AC+ GK     + +S +   +PL++IH+DVWGPAPILS
Sbjct: 456  EKVLKDNNV-KISPSDKFTFCEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWGPAPILS 514

Query: 917  KDGFRYYVHFVDD 955
            +  F+YYVHF+DD
Sbjct: 515  QSNFKYYVHFLDD 527


>gb|PNX81106.1| glutamate receptor [Trifolium pratense]
          Length = 559

 Score =  202 bits (514), Expect = 6e-57
 Identities = 120/314 (38%), Positives = 167/314 (53%), Gaps = 4/314 (1%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYS 205
            ++P+CQ+C    H A  C+ RFD S+ G                Y +  +   G+   + 
Sbjct: 260  SKPVCQVCTG-SHTAINCFYRFDKSYTGP--------------NYSNSENEKQGTHNAFV 304

Query: 206  TTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYN 385
             +     D  WY DSGA+NH+T         TE+ G N L++GNG+ L I   GSS +  
Sbjct: 305  ASPYNGQDYEWYFDSGASNHVTHQADRFEDLTEHTGKNSLMVGNGEKLKIVASGSSKI-- 362

Query: 386  SHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLS 565
                +T+ L+N+L VP+ITKNLLS+S+LT DN   VEF HDYC VK++ + + LL+G L 
Sbjct: 363  ----NTVNLHNVLYVPQITKNLLSVSKLTSDNNAIVEFDHDYCYVKDKVTGKVLLKGRLK 418

Query: 566  EGLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNV 745
            +GLY+L        S AT  +  SC                       WH +LGHPNN  
Sbjct: 419  DGLYQL--------SDATQTNKDSC---------------VYLSVKESWHRKLGHPNNKA 455

Query: 746  MRHMLSNKELLSTAPS----FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPIL 913
            +  +L     + T+PS    FC AC++GKS    + SS +   + LE++H+DVWGPAPI 
Sbjct: 456  LDRVLKICN-VKTSPSDQLEFCEACQLGKSHLLPFKSSSSHAQEFLELVHTDVWGPAPIN 514

Query: 914  SKDGFRYYVHFVDD 955
            S  GF+YYVHFVDD
Sbjct: 515  SISGFKYYVHFVDD 528


>gb|PNX78574.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 677

 Score =  202 bits (513), Expect = 6e-56
 Identities = 119/311 (38%), Positives = 165/311 (53%), Gaps = 4/311 (1%)
 Frame = +2

Query: 35   LCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYSTTN 214
            +CQ+CNK GH A +C  R+D S+ G                Y +       +   +  + 
Sbjct: 261  ICQVCNKHGHTAIECDHRYDKSYTGSS--------------YSNANVERQRTHNAFLASR 306

Query: 215  DTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNSHT 394
                D  WY DSGA+NH+T         TE  G N L++GNG  L I   GSS L N   
Sbjct: 307  YNSQDYEWYFDSGASNHVTHQADKFQELTENSGKNSLIVGNGAKLKIDASGSSKLKN--- 363

Query: 395  QSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSEGL 574
               L L+++L VP+ITKNLLS+S+LT DN + VEF +D C VK++ + + LLRG+L +GL
Sbjct: 364  ---LNLHDVLYVPQITKNLLSVSKLTSDNNIIVEFDNDCCFVKDKLTGKVLLRGILKDGL 420

Query: 575  YRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRH 754
            Y+L    + T             +K P  +               WH +LGHP+NNV+  
Sbjct: 421  YQLSNGSSQT-------------NKDPCVY---------LSVKESWHRKLGHPSNNVLDK 458

Query: 755  MLSNKELLSTAPS----FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKD 922
            +L    +  T+PS    FC AC++GKS    + SS +   + LE+IH+DVWGPAPI S  
Sbjct: 459  VLKICNV-KTSPSDKFKFCEACQLGKSHLLPFKSSSSHAQEVLELIHTDVWGPAPINSIS 517

Query: 923  GFRYYVHFVDD 955
            GF+YYVHF+DD
Sbjct: 518  GFKYYVHFIDD 528


>gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 533

 Score =  196 bits (497), Expect = 1e-54
 Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 17/326 (5%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGS----- 190
            N+  CQ+C K GHIA  C+ R+D  +                    H T+  N       
Sbjct: 135  NKQPCQVCGKIGHIAFHCWHRYDQQYT--------------EPNLNHNTNVYNPGNQQQM 180

Query: 191  QAYYSTTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGS 370
            QA  + + +   D+ WY DSGATNH+T+D +NL   T+Y G + + +GNGQ++ I+H G+
Sbjct: 181  QAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGT 240

Query: 371  SSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELL 550
            S  +   +     L  LL VP ITKNLLS+S+  KDN V+VEF+ +YC VK Q SK  LL
Sbjct: 241  SFFHTPMSSKIFTLKELLHVPHITKNLLSVSKFCKDNNVYVEFHTNYCLVKSQDSKETLL 300

Query: 551  RGVLSEGLY--------RLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXX 706
            RG L  GLY        +  +++    S  T+   L     R ++               
Sbjct: 301  RGNLKNGLYVFDEVQILKPDVYEHTVDSVPTNRTTLYVQRTRKSY--------------D 346

Query: 707  XWHMRLGHPNNNVMRHMLSNKEL---LSTAPSF-CNACRIGKSKHKHYSSSFTVTTKPLE 874
             WH RL H +  +++ ++    +   ++   S  C +C IGKS    +S S+TV   PLE
Sbjct: 347  VWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLE 406

Query: 875  IIHSDVWGPAPILSKDGFRYYVHFVD 952
            +++SDVWGP+   S++GFRYYVHF D
Sbjct: 407  LVYSDVWGPSHYASREGFRYYVHFTD 432


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  202 bits (513), Expect = 1e-54
 Identities = 121/317 (38%), Positives = 170/317 (53%), Gaps = 7/317 (2%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAY-- 199
            +R +CQ+C KPGH AS CY RF+ ++ GQ                  Q S  +  Q Y  
Sbjct: 173  DRIVCQVCCKPGHAASHCYHRFNKNYIGQNSD--------------EQKSEKDKEQNYNF 218

Query: 200  --YSTTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSS 373
              Y  +  T  D  WY DSGA+NH+T D + +    E  G + L +GNG +L I   G S
Sbjct: 219  NAYVASPSTVEDLDWYFDSGASNHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDS 278

Query: 374  SLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLR 553
            SL     Q +L L ++L VPKITKNLLSIS+LT DN ++VEF+   C VK++ + R LL 
Sbjct: 279  SLDTQ--QKSLNLKDILYVPKITKNLLSISKLTFDNDIYVEFHDVACFVKDKLTGRILLE 336

Query: 554  GVLSEGLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHP 733
            G + +GLY+L    T T             +KRP  F               WH +LGHP
Sbjct: 337  GKIKDGLYQLPGGSTST-------------NKRPHVF---------FSIKETWHRKLGHP 374

Query: 734  NNNVMRHMLSNKELLSTAPS---FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPA 904
            N+ V+  ++    + ++      FC AC+ GK+ +  + +S +   +PL+++HSDVWGPA
Sbjct: 375  NSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWGPA 434

Query: 905  PILSKDGFRYYVHFVDD 955
            PI S  GF+YYV F+DD
Sbjct: 435  PISSVSGFKYYVLFLDD 451


>gb|KYP78000.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 575

 Score =  196 bits (498), Expect = 2e-54
 Identities = 115/314 (36%), Positives = 164/314 (52%), Gaps = 5/314 (1%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQ-AYY 202
            NRP+CQ+CNKPGH A  CY RF+  +Q                    + +  + S  +  
Sbjct: 259  NRPICQVCNKPGHTALNCYHRFNPQYQDSSAQQVSNYSETQQKAMVTEANLDDQSNVSAL 318

Query: 203  STTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLY 382
                DT  D +WY D+GATNHITA+ SN+   + Y G   L + NG S  I H G S LY
Sbjct: 319  MAVPDTFCDLAWYPDTGATNHITANASNMAGKSTYTGETKLKMTNGDSTSIQHIGHSYLY 378

Query: 383  NSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVL 562
            +S++   L L NLL VP I+KNL+S+SQ  +DN V  EF  + C VK Q SK  LL G  
Sbjct: 379  SSNSNKPLFLKNLLHVPSISKNLISVSQFCRDNNVKFEFTANNCCVKSQDSKHTLLEGHF 438

Query: 563  SEGLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNN 742
            ++GLY   +    +  P+  + + + +S                     WH +LGH N  
Sbjct: 439  TKGLY---VFYNISVGPSVCNSVTTENSN-----SIRELPNNKCDLYRIWHAKLGHVNYK 490

Query: 743  VMRHMLSNKELLSTAP----SFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPI 910
            ++ H + NK  +S +     S C +C +GK   K +  S TV T PL++I++++WGPAPI
Sbjct: 491  IV-HDVMNKCGVSVSKNSTFSLCKSCCLGKLHKKPFYYSTTVYTSPLQLIYTNIWGPAPI 549

Query: 911  LSKDGFRYYVHFVD 952
             S  G +YY+ F+D
Sbjct: 550  PSSSGSKYYIEFID 563


>gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygrometricum]
          Length = 706

 Score =  197 bits (500), Expect = 6e-54
 Identities = 116/314 (36%), Positives = 167/314 (53%), Gaps = 6/314 (1%)
 Frame = +2

Query: 29   RPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYST 208
            RP+CQ+C  PGH+A  CY RFD  F  +                 +++S      A+ ST
Sbjct: 208  RPVCQICGIPGHVAEICYYRFDKEFVPKSSGVSRTSQQQF-----NRSSPSYPPSAFAST 262

Query: 209  TNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 388
             +++ S+  WY DSGA++H+T D  NL   +EY G + + +GNG  L IS+ G S+L   
Sbjct: 263  KSESASEEWWYPDSGASHHVTNDLGNLSVSSEYTGGSKVQVGNGAGLSISNIGESNLNMF 322

Query: 389  HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSE 568
             +    +L NLL VP ITKNL+S+S+   DN V+ EF+  +C VK+  +   LLRG L  
Sbjct: 323  PSSRPFLLKNLLHVPLITKNLISVSKFAYDNHVYFEFHPSFCLVKDPATHVVLLRGTLHN 382

Query: 569  GLYRLQLHQT---PTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPN- 736
            GLYR  L      P  SPA     +S     P                  WH+RLGHP+ 
Sbjct: 383  GLYRFNLKSRISGPLHSPACLQSSVS-----PIKVPDQSPLCLPQNTLDKWHLRLGHPSI 437

Query: 737  NNVMRHMLSNKELLSTAP--SFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPI 910
              V + +L   E +S     SFC++C++GK+    +  S T  + P E+++SD+WGPA I
Sbjct: 438  ATVKQVLLDCNERISKNDNISFCSSCQLGKNHLLPFPQSTTNFSAPFEVVYSDLWGPAHI 497

Query: 911  LSKDGFRYYVHFVD 952
             S++G RYY+ FVD
Sbjct: 498  PSRNGSRYYISFVD 511


>gb|KYP44478.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 605

 Score =  195 bits (495), Expect = 7e-54
 Identities = 117/316 (37%), Positives = 163/316 (51%), Gaps = 7/316 (2%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQ---GQPXXXXXXXXXXXXXXYGHQTSSGNGSQA 196
            NRP+CQ+CNKPGH A  CY RF+  +Q    Q                G+     N S  
Sbjct: 224  NRPICQVCNKPGHTALNCYHRFNPQYQDSSAQQVSNSSKTQQKAMVTKGNLDYQSNVSAL 283

Query: 197  YYSTTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSS 376
                  DT  D +WY D+ ATNHITA+ SN+   + Y G   L + NG S  I H G S 
Sbjct: 284  M--AVPDTFYDPAWYPDTRATNHITANASNMAGKSTYTGETKLKMANGDSTSIQHIGHSY 341

Query: 377  LYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG 556
            LY+S++   L L NLL VP I+KNL+S+SQ  +DN V  EF  + C VK Q SK  LL G
Sbjct: 342  LYSSNSNKPLFLKNLLHVPSISKNLISVSQFCRDNNVKFEFTANNCCVKSQDSKHTLLEG 401

Query: 557  VLSEGLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPN 736
              ++GLY   +    +  P+  + + + +S                     WH +LGH N
Sbjct: 402  HFTKGLY---VFHNISVGPSVCNSVTTENSN-----SIRELPNNKCDLYRIWHAKLGHAN 453

Query: 737  NNVMRHMLSNKELLSTAP----SFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPA 904
              ++ H + NK  +S +     S C +C +GK   + +  S TV T PL++I++D+WGPA
Sbjct: 454  YKIV-HDVMNKCGVSVSKNSTFSLCKSCCLGKLHKQPFYYSNTVYTSPLQLIYTDIWGPA 512

Query: 905  PILSKDGFRYYVHFVD 952
            PI S  G +YY+ F+D
Sbjct: 513  PIPSSSGSKYYIEFID 528


>ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177515 [Citrus sinensis]
          Length = 1143

 Score =  198 bits (503), Expect = 3e-53
 Identities = 115/342 (33%), Positives = 176/342 (51%), Gaps = 32/342 (9%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYS 205
            ++P CQ+C K GH A+ C++  +    G                  ++       +A Y 
Sbjct: 300  SKPTCQICLKTGHTANICWKLTEFINSG-----------------AYRPPPNRNPKAAYL 342

Query: 206  TTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYN 385
               +  SD +WYLDSGAT+H+T D +N+H    + GI+ L++GNG  L I+H GS+ L  
Sbjct: 343  ANMEGPSDANWYLDSGATHHLTNDMNNMHVSESFTGISKLIVGNGAGLDITHLGSAVLKM 402

Query: 386  SHTQ----STLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLR 553
               +    S L LN++L VP+ITKNL+SIS+LTKDN + VEF   +C VK++     +L+
Sbjct: 403  HENEDNALSILKLNDILLVPQITKNLISISRLTKDNNIVVEFTDKFCFVKDKMKNVVILQ 462

Query: 554  GVLSEGLYRLQLHQTPTT--SPATSHHMLSCDSKRP-AHFQ------------------- 667
            G   + LYRL L  +  T  +P+   +  + +S  P  H                     
Sbjct: 463  GKAEKSLYRLLLVSSNKTFITPSGQSYSANVESTEPLTHLSMFSSVSSDFKNKTNCLHTS 522

Query: 668  -XXXXXXXXXXXXXXWHMRLGHPNNNVMRHMLSNKELLSTAP-----SFCNACRIGKSKH 829
                           +H RLGHP+++V+ H++     + T         C+AC++GK   
Sbjct: 523  AVPCINSECLLSTSVFHQRLGHPSSHVLNHVIKTCSFVKTINGNRTFDSCDACKMGKMHR 582

Query: 830  KHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVDD 955
             H+S + T T  PLEI+H+D+WGP+P++S  G+RYYV FVDD
Sbjct: 583  LHFSVTETKTKFPLEILHTDLWGPSPVISPQGYRYYVSFVDD 624


>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
          Length = 1000

 Score =  197 bits (501), Expect = 4e-53
 Identities = 120/309 (38%), Positives = 165/309 (53%), Gaps = 3/309 (0%)
 Frame = +2

Query: 38   CQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYSTTND 217
            CQ+C+  GH A  C  RFD S+ G+               Y  +        A+ ++   
Sbjct: 261  CQVCSGTGHTAVDCSYRFDRSYTGR--------------NYSTEADKQGSHSAFVASPYH 306

Query: 218  TQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNSHTQ 397
             Q D  WY DSGA+NH+T          E+ G N L++GNG+ L I   GS+ L      
Sbjct: 307  GQ-DYEWYFDSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKL------ 359

Query: 398  STLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSEGLY 577
            +TL L+++L VP+ITKNLLS+S+LT DN +FVEF  + CSVK++ + + LL+G L +GLY
Sbjct: 360  NTLNLHDVLYVPQITKNLLSVSKLTADNNIFVEFDANCCSVKDKLTGQTLLKGRLKDGLY 419

Query: 578  RLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHM 757
            +L        SP ++        K P  +               WH +LGHPNN V+  +
Sbjct: 420  QLS-----DVSPQSN--------KDPCVYMSVKES---------WHRKLGHPNNKVLEKV 457

Query: 758  LSN---KELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGF 928
            L +   K   S   SFC AC+ GK     + SS +   +PL +IHSDVWGPAPILS  GF
Sbjct: 458  LKDCNVKISPSDQFSFCEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWGPAPILSPSGF 517

Query: 929  RYYVHFVDD 955
            +YYVHF+DD
Sbjct: 518  KYYVHFIDD 526


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  196 bits (497), Expect = 2e-52
 Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 17/326 (5%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGS----- 190
            N+  CQ+C K GHIA  C+ R+D  +                    H T+  N       
Sbjct: 269  NKQPCQVCGKIGHIAFHCWHRYDQQYT--------------EPNLNHNTNVYNPGNQQQM 314

Query: 191  QAYYSTTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGS 370
            QA  + + +   D+ WY DSGATNH+T+D +NL   T+Y G + + +GNGQ++ I+H G+
Sbjct: 315  QAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGT 374

Query: 371  SSLYNSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELL 550
            S  +   +     L  LL VP ITKNLLS+S+  KDN V+VEF+ +YC VK Q SK  LL
Sbjct: 375  SFFHTPMSSKIFTLKELLHVPHITKNLLSVSKFCKDNNVYVEFHTNYCLVKSQDSKETLL 434

Query: 551  RGVLSEGLY--------RLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXX 706
            RG L  GLY        +  +++    S  T+   L     R ++               
Sbjct: 435  RGNLKNGLYVFDEVQILKPDVYEHTVDSVPTNRTTLYVQRTRKSY--------------D 480

Query: 707  XWHMRLGHPNNNVMRHMLSNKEL---LSTAPSF-CNACRIGKSKHKHYSSSFTVTTKPLE 874
             WH RL H +  +++ ++    +   ++   S  C +C IGKS    +S S+TV   PLE
Sbjct: 481  VWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLE 540

Query: 875  IIHSDVWGPAPILSKDGFRYYVHFVD 952
            +++SDVWGP+   S++GFRYYVHF D
Sbjct: 541  LVYSDVWGPSHYASREGFRYYVHFTD 566


>emb|CAB43904.1| putative protein [Arabidopsis thaliana]
 emb|CAB81478.1| putative protein [Arabidopsis thaliana]
          Length = 1415

 Score =  194 bits (492), Expect = 9e-52
 Identities = 113/311 (36%), Positives = 166/311 (53%), Gaps = 2/311 (0%)
 Frame = +2

Query: 29   RPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYST 208
            RP CQ+CNK GH A KC++RFD +FQ +                         S+A+ + 
Sbjct: 247  RPTCQICNKYGHSAYKCWKRFDHAFQSEDF-----------------------SKAFAAM 283

Query: 209  TNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 388
                Q  N W  DSGAT+HIT   S L     Y G + +++GN   L I+H GS+ L ++
Sbjct: 284  RVSDQKSNPWVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSN 343

Query: 389  HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSE 568
              Q  L L ++L  P ITK+LLS+S+LT D P  +EF  D   VK++ +K+ L +G    
Sbjct: 344  --QGNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHN 401

Query: 569  GLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVM 748
             LY L+           +   ++C S R                   WHMRLGHPN +V+
Sbjct: 402  DLYLLE-----------NPKFMACYSSRQQ-----------ATSDEVWHMRLGHPNQDVL 439

Query: 749  RHMLSNKELL--STAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKD 922
            + +L NK ++   T+ S C+AC++GK     ++SS  V+++ LE +H D+WGPAP++S  
Sbjct: 440  QQLLRNKAIVISKTSHSLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQ 499

Query: 923  GFRYYVHFVDD 955
            GFRYYV F+D+
Sbjct: 500  GFRYYVIFIDN 510


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  193 bits (491), Expect = 1e-51
 Identities = 113/309 (36%), Positives = 161/309 (52%), Gaps = 3/309 (0%)
 Frame = +2

Query: 38   CQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYSTTND 217
            CQ+C    HIA  C+ RFD ++                   GH      GS   +  + +
Sbjct: 259  CQVCGLSNHIAIDCFHRFDKTYSRSNHSA------------GHDKQ---GSHNAFLASQN 303

Query: 218  TQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNSHTQ 397
            +  D  WY DSGA+NH+T         TE+ G N L++GNG+ L I   GSS L      
Sbjct: 304  SVEDYDWYFDSGASNHVTHQTEKFQDLTEHHGKNSLVVGNGEKLAILATGSSKL------ 357

Query: 398  STLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSEGLY 577
             +L L+++L VP ITKNLLS+S+L  DN + VEF  + C VK++ + + +L+G+L +GLY
Sbjct: 358  KSLNLHDILYVPNITKNLLSVSKLAADNNILVEFDENCCFVKDKLTGKVILKGLLKDGLY 417

Query: 578  RLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVMRHM 757
            +L                 S   + P+ F               WH RLGHPNN V+  +
Sbjct: 418  QL-----------------SGTKRNPSAF---------VSVKESWHRRLGHPNNKVLDKV 451

Query: 758  LSNKELL---STAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGF 928
            L + ++    S   SFC AC+ GK     + SS +   +PLE++H+DVWGPAPI++  GF
Sbjct: 452  LESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMTSSGF 511

Query: 929  RYYVHFVDD 955
            +YYVHFVDD
Sbjct: 512  KYYVHFVDD 520


>dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subterraneum]
          Length = 888

 Score =  192 bits (487), Expect = 2e-51
 Identities = 128/357 (35%), Positives = 176/357 (49%), Gaps = 52/357 (14%)
 Frame = +2

Query: 38   CQLCNKPGHIASKCYRRFDISFQ------GQPXXXXXXXXXXXXXXYGHQTSSGNGSQAY 199
            CQ+C+KP HIA  C+ R     Q      G                Y  Q       Q Y
Sbjct: 106  CQICSKPNHIALDCWYRHQPQSQNHSAASGSQQAPPPGYFQEAYGPYSGQNFPPRYGQYY 165

Query: 200  -YSTTN-----------------------------DTQSDNSWYLDSGATNHITADPSNL 289
             Y   N                              T +  SWY DSGA+ H+T D  N+
Sbjct: 166  GYGAPNPINWLSANPPPRFPTPPPSYPTAMLANGPSTSNPPSWYPDSGASFHVTGDSRNI 225

Query: 290  HHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS--HTQSTLILNNLLCVPKITKNLLSIS 463
              PT + G  H+ +GNGQSL I   GSS ++N+  HTQ+ LILNNLL VP ITKNL+S+S
Sbjct: 226  QEPTPFAGSEHIYMGNGQSLPIISSGSS-IFNAPNHTQTHLILNNLLHVPSITKNLISVS 284

Query: 464  QLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VLSEGLYRLQLHQTPTTSPATSHHMLSC 640
            Q  KDN V+ EF+ +YC VK Q + + LL+G V ++GLY        + +PA S  +LS 
Sbjct: 285  QFAKDNAVYFEFHPNYCLVKSQATNKVLLQGNVGTDGLYSF---SHISIAPAKSSSLLS- 340

Query: 641  DSKRPAHF-----QXXXXXXXXXXXXXXWHMRLGHPNNNVMRHML--------SNKELLS 781
             S +P+ F                    WH+RLGHPN+  ++  L        +NK  +S
Sbjct: 341  -SFKPSVFNVHSSSTVSNSSLSFNSLYLWHLRLGHPNDQTLKSTLKQCNIPFINNKHDVS 399

Query: 782  TAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKDGFRYYVHFVD 952
               +FC AC +GK+   +  +S T  T+PLE++ SD+WGP+P +S  GF YY+ F+D
Sbjct: 400  ---NFCTACCMGKAHRLYAPASQTTYTQPLELVFSDLWGPSPTVSSLGFHYYISFID 453


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  192 bits (489), Expect = 2e-51
 Identities = 115/315 (36%), Positives = 165/315 (52%), Gaps = 6/315 (1%)
 Frame = +2

Query: 26   NRPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSG--NGSQAY 199
            N+P CQLC + GH+  +CY RFD SF G P                 Q S     G+ + 
Sbjct: 282  NKPQCQLCGRIGHVVMQCYYRFDQSFTG-PSQLQGNRPQGNMAHLHQQLSEXFFPGTPSV 340

Query: 200  YSTTNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSL 379
              TT +   DN+WY DSGAT+H+T + +NL   +++   + + +GNG+ L I H G +S 
Sbjct: 341  KPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSF 400

Query: 380  YNSHTQS-TLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG 556
             +S   S TL L  LL VP+ITKNLLS+S+   DN VF EF+   C VK+ +++  L+ G
Sbjct: 401  SSSFIPSKTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHG 460

Query: 557  VLSEGLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPN 736
             L  GLY         T      H  SC +      +              WH RLGHP+
Sbjct: 461  QLKGGLYVFD-----NTQLKLPLHNSSCFASTALPSKEPTVPASPTSPFTLWHNRLGHPS 515

Query: 737  NNVMRHMLSNKEL--LSTAPS-FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAP 907
            ++++  +L+   L  L+  PS  C+ C +GK     +  S +  TKPLE+IH+D+WGPA 
Sbjct: 516  SHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPAS 575

Query: 908  ILSKDGFRYYVHFVD 952
              S  G +YY+HF+D
Sbjct: 576  TPSSHGHQYYIHFID 590


>gb|PKU71759.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 594

 Score =  187 bits (475), Expect = 5e-51
 Identities = 110/311 (35%), Positives = 157/311 (50%), Gaps = 2/311 (0%)
 Frame = +2

Query: 29  RPLCQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYST 208
           RP CQ+C K GH+A  C+ R ++ +                    H TS+          
Sbjct: 55  RPTCQICGKIGHVALNCWHRCNLKYA-------PTDSRQPRALLAHPTST---------- 97

Query: 209 TNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 388
                S   W +DSGA+ H+T D  N+ +PT Y+G + + + NG SL I H G   L   
Sbjct: 98  -----SPQDWIVDSGASTHLTPDVQNIQYPTHYQGFDSVSVANGTSLPIQHSGQGLLPLP 152

Query: 389 HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVLSE 568
            T   L L NLL VP +  NLLS+S+LT DN V + F  +   +K+   +R LL G L  
Sbjct: 153 DTSRKLRLQNLLHVPNLKHNLLSVSKLTTDNSVSITFDANGFLIKDIQDQRPLLHGRLHN 212

Query: 569 GLYRLQLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNNNVM 748
            LY++QL      SP T+   LS  +K                    WH RLGHPNN ++
Sbjct: 213 ELYQVQL------SPDTNSTALSAITK----------------DSVIWHARLGHPNNQIL 250

Query: 749 RHMLSNKELLSTAPS--FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPILSKD 922
             +      +S+ PS   C++C + KS  + ++ SF+VTT P +++H+DVWGPA + S +
Sbjct: 251 SALAKCFPEISSVPSSFICSSCNMAKSHKQVFNKSFSVTTAPFDLLHTDVWGPASVPSVE 310

Query: 923 GFRYYVHFVDD 955
           GFRYY+ FVDD
Sbjct: 311 GFRYYIVFVDD 321


>gb|KYP66597.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 562

 Score =  186 bits (472), Expect = 8e-51
 Identities = 111/317 (35%), Positives = 162/317 (51%), Gaps = 12/317 (3%)
 Frame = +2

Query: 38   CQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYY---ST 208
            CQLC K GH A  C+ RFD +                     H TS     +  +   + 
Sbjct: 237  CQLCGKLGHSAYHCWSRFDENLPDPKTTQ-------------HNTSDAVIQEPLHQAMTA 283

Query: 209  TNDTQS--DNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLY 382
            T+ TQS  D +WY D+GA+NH T++ SNL   T + G   +++GNG  L I + G+S L 
Sbjct: 284  TSATQSSLDETWYPDTGASNHFTSNLSNLMIKTPFVGTEKVVVGNGNCLPIHNIGTSKLK 343

Query: 383  NSHTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRGVL 562
            N        LN LL VP ITKNLLS++Q  K+N  F EF+   C VK Q S++ LL+G L
Sbjct: 344  NPSNNIAFTLNKLLHVPDITKNLLSVAQFAKENSCFFEFHSTDCFVKSQGSRKILLQGKL 403

Query: 563  SEGLYRLQ----LHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGH 730
              GLY  +    +H       +  +   +C+S                     WH RLGH
Sbjct: 404  KNGLYAFENLQIVHPNNDFPVSALYSSTTCNS------------------LPIWHSRLGH 445

Query: 731  PNNNVMRHMLSNKEL---LSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGP 901
              N +++H+L    +   L    + C +C +GK     +S S +V T+PL++++SD+WGP
Sbjct: 446  CANKIVKHVLKQCNISVPLHDNATVCGSCCLGKMHKSSFSISESVYTEPLQLVYSDIWGP 505

Query: 902  APILSKDGFRYYVHFVD 952
            +PI SK+G+RYY+ F+D
Sbjct: 506  SPIPSKEGYRYYIVFLD 522


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  190 bits (483), Expect = 1e-50
 Identities = 117/314 (37%), Positives = 168/314 (53%), Gaps = 9/314 (2%)
 Frame = +2

Query: 38   CQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYST--- 208
            CQ+C++ GH+AS CY RFD ++                       SS   + AY S    
Sbjct: 300  CQVCHRYGHVASACYYRFDETYV---------------------PSSPLEAPAYPSNNQH 338

Query: 209  TNDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 388
            TN    +N+WY DSGA+NH+T    N+H  T ++G + + +GNGQ L I+  G ++ ++ 
Sbjct: 339  TNPGACNNNWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSP 398

Query: 389  -HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VL 562
             + +    LNNLL VP ITKNL+S+SQ +KDN V+ EF+   C VK Q +   LL+G V 
Sbjct: 399  INPKFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVG 458

Query: 563  SEGLYRLQ-LHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNN 739
            S+GLY+   L   P+T       +    S   A                 WH RLGHPN 
Sbjct: 459  SDGLYKFPALLPNPSTQSVQQQQLARIFSVNTA--------ATSPVSFATWHSRLGHPNV 510

Query: 740  NVMRHMLSNK--ELLSTAPS-FCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPI 910
            +VM+H+  N   +L+S   S FC  C +GKS     + S T+   P ++++SD+WGPAP+
Sbjct: 511  DVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPV 570

Query: 911  LSKDGFRYYVHFVD 952
             S  G++YYV FVD
Sbjct: 571  TSTCGYQYYVTFVD 584


>gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 653

 Score =  187 bits (474), Expect = 2e-50
 Identities = 115/314 (36%), Positives = 168/314 (53%), Gaps = 9/314 (2%)
 Frame = +2

Query: 38   CQLCNKPGHIASKCYRRFDISFQGQPXXXXXXXXXXXXXXYGHQTSSGNGSQAYYSTT-- 211
            CQ+C++ GH+AS CY RFD ++                       SS   + AY+ST   
Sbjct: 172  CQVCHRYGHVASACYYRFDETYV---------------------PSSPLEAPAYHSTNQH 210

Query: 212  -NDTQSDNSWYLDSGATNHITADPSNLHHPTEYKGINHLLIGNGQSLFISHYGSSSLYNS 388
             N +  +N+WY DSGA+NH+T    N+   T ++G + + +GNGQ L I+  G ++ ++ 
Sbjct: 211  ANTSVCNNNWYPDSGASNHVTNVSQNIQQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSP 270

Query: 389  -HTQSTLILNNLLCVPKITKNLLSISQLTKDNPVFVEFYHDYCSVKEQTSKRELLRG-VL 562
             + +    LNNLL VP ITKNL+S+SQ +KDN V+ EF+   C VK Q +K  LL+G V 
Sbjct: 271  INPKFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPYICLVKSQDTKEVLLQGSVG 330

Query: 563  SEGLYRL-QLHQTPTTSPATSHHMLSCDSKRPAHFQXXXXXXXXXXXXXXWHMRLGHPNN 739
             +GLY+   L  TP+T         S    +PA                 WH RLGHPN 
Sbjct: 331  PDGLYQFPALLPTPSTQ--------SVQQVQPARSFSVNTTAKSYVSFATWHSRLGHPNV 382

Query: 740  NVMRHMLSN---KELLSTAPSFCNACRIGKSKHKHYSSSFTVTTKPLEIIHSDVWGPAPI 910
            +VM+H+  N   + + +    FC  C +GKS     + S TV   P ++++SD+ GPAP+
Sbjct: 383  DVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKTVYNTPFDLVYSDLCGPAPV 442

Query: 911  LSKDGFRYYVHFVD 952
             S  G++YYV FVD
Sbjct: 443  TSTCGYQYYVTFVD 456