BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00026668
         (654 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO78632.1| Integrase, catalytic core [Corchorus capsularis]        42   1e-06
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...    43   6e-06

>gb|OMO78632.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1247

 Score = 41.6 bits (96), Expect(2) = 1e-06
 Identities = 17/38 (44%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = +1

Query: 52  ILPQ-KTKFDSRAHKCIFLVYELGQKGYELFNLVTHRL 162
           ++P+ + KF +RA  C+FL Y  GQKGY++++L TH++
Sbjct: 613 VIPRSRDKFHARATTCLFLGYPHGQKGYKVYDLTTHKI 650



 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
 Frame = +3

Query: 177  FVETEFPSYNKSTETPLPITTSFDTD--------YNXXXXXXXXXXXXXXXXXXXHLDLH 332
            F +   P++N ST TP+P+    DT+        +                    +    
Sbjct: 665  FQDKNSPNHNTSTTTPIPLPIFDDTESMSLGSAPHTTTMMTHTPEILDSNDTTNTNTPPT 724

Query: 333  IPHRKAPRHITK-PFRFNDF-VTCNITNL*PTTAVPDGLPRLSLTALPF-SFSTF----V 491
            IP    P  + K P R+++F V     N    T+  +    +S   + F S+S F     
Sbjct: 725  IPQENRPVRVRKLPSRYHNFHVDLPGNNKSTPTSSNNASSGMSYPLVNFLSYSKFNSPHT 784

Query: 492  SSLDTVSTLHEPISNAQASKDPGWVEVMNKEVEA 593
            S L  ++  +EP S  QA KD  W E M KE+EA
Sbjct: 785  SFLMAITQHNEPTSYKQAIKDTHWQEAMKKELEA 818


>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1316

 Score = 43.1 bits (100), Expect(2) = 6e-06
 Identities = 21/37 (56%), Positives = 24/37 (64%)
 Frame = +1

Query: 52  ILPQKTKFDSRAHKCIFLVYELGQKGYELFNLVTHRL 162
           I   +TK D RAH CIFL ++   KGY LFNL TH L
Sbjct: 642 ITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGL 678



 Score = 35.0 bits (79), Expect(2) = 6e-06
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 10/155 (6%)
 Frame = +3

Query: 159  VTKEVHFVETEFPSYNK----STETPLPITTSFDTDYNXXXXXXXXXXXXXXXXXXXHLD 326
            V++ V F E  FPS+ K    S  +P+PI       YN                     D
Sbjct: 680  VSRNVLFHEDHFPSFTKPHSPSFSSPVPI------HYNYVDYPTFPSSSIVESSDPPTSD 733

Query: 327  LHI---PHRKAPRHITKPFRFNDF--VTCNITNL*PTTAVPDGLPR-LSLTALPFSFSTF 488
             H    P R++ R    P    DF     + +    +T +   L   LS   L  SF  +
Sbjct: 734  QHSSPPPLRRSTRPRRPPTYLQDFHGAFTSTSTAHSSTGIRHPLHSFLSYDLLSPSFHHY 793

Query: 489  VSSLDTVSTLHEPISNAQASKDPGWVEVMNKEVEA 593
            V S+ +V+   EP + A+ASK   W++ M++E+ A
Sbjct: 794  VFSISSVT---EPKNFAEASKSDSWLKAMHEEIFA 825