BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00026616
         (986 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX98092.1| retrovirus-related Pol polyprotein from transposo...   529   0.0  
gb|PNX82793.1| retrovirus-related Pol polyprotein from transposo...   523   0.0  
gb|PNY16257.1| copia protein (gag-int-pol protein) [Trifolium pr...   546   e-180
gb|PNY12308.1| retrovirus-related Pol polyprotein from transposo...   543   e-179
gb|PNX93622.1| retrovirus-related Pol polyprotein from transposo...   533   e-175
gb|PNX92344.1| retrovirus-related Pol polyprotein from transposo...   534   e-175
gb|KYP66022.1| Retrovirus-related Pol polyprotein from transposo...   501   e-172
gb|KYP56739.1| Retrovirus-related Pol polyprotein from transposo...   498   e-171
dbj|GAU11040.1| hypothetical protein TSUD_113330 [Trifolium subt...   518   e-170
gb|PNX72659.1| retrovirus-related Pol polyprotein from transposo...   493   e-169
gb|KYP61781.1| Retrovirus-related Pol polyprotein from transposo...   513   e-168
gb|PNX92993.1| retrovirus-related Pol polyprotein from transposo...   513   e-167
gb|KYP75798.1| Retrovirus-related Pol polyprotein from transposo...   478   e-166
dbj|GAU21017.1| hypothetical protein TSUD_201660 [Trifolium subt...   503   e-166
gb|KYP63761.1| Retrovirus-related Pol polyprotein from transposo...   498   e-166
ref|XP_017415205.1| PREDICTED: retrovirus-related Pol polyprotei...   496   e-166
gb|KYP43009.1| Retrovirus-related Pol polyprotein from transposo...   498   e-165
gb|KYP77073.1| Retrovirus-related Pol polyprotein from transposo...   498   e-165
gb|PNX92904.1| retrovirus-related Pol polyprotein from transposo...   507   e-165
gb|KYP57917.1| Retrovirus-related Pol polyprotein from transposo...   477   e-164

>gb|PNX98092.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 503

 Score =  529 bits (1362), Expect = 0.0
 Identities = 251/328 (76%), Positives = 282/328 (85%)
 Frame = -3

Query: 984 VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
           +KD RWR+AM+ EI+ALE N TW +  LPP KK LGC+WVY+IK++SDGT+ERFKARLVI
Sbjct: 1   MKDTRWRDAMQAEIQALERNSTWSIQQLPPGKKALGCKWVYRIKHHSDGTIERFKARLVI 60

Query: 804 FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
            GNHQVEG+++TETFAPVAKMVTVR  LAVAAAK WELHQMDVHN FLHGDL EEV+MKM
Sbjct: 61  LGNHQVEGVNYTETFAPVAKMVTVRTVLAVAAAKDWELHQMDVHNXFLHGDLHEEVFMKM 120

Query: 624 PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
           PPGF      MVCKL KSLYGLKQAPRCWFAKLSAAL+ YGF+QSY DYSLFTL Q  T 
Sbjct: 121 PPGFSTSZQNMVCKLHKSLYGLKQAPRCWFAKLSAALKSYGFQQSYLDYSLFTLHQKDTH 180

Query: 444 INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
           + VLVYVDDLII+GN   AI++FK YLSTCFHMKDLGVLKYFLG+EVAR+P GIYLCQRK
Sbjct: 181 LVVLVYVDDLIIAGNASSAIKRFKLYLSTCFHMKDLGVLKYFLGIEVARNPAGIYLCQRK 240

Query: 264 YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
           Y LDI+SE GLLGAKPA  P+EQNHRL LA G LL  PE+YRRLVGRLIYLCFT+PE+SY
Sbjct: 241 YALDIISEAGLLGAKPAATPLEQNHRLSLAAGPLLSNPEKYRRLVGRLIYLCFTQPELSY 300

Query: 84  SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
            VH+LSQFM +PR +HWEAALRVVR+LK
Sbjct: 301 CVHILSQFMHEPRTDHWEAALRVVRFLK 328


>gb|PNX82793.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 562

 Score =  523 bits (1348), Expect = 0.0
 Identities = 252/328 (76%), Positives = 276/328 (84%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKD +WREAMK EI+ALE+NGTW +THLP  KK LGC+WVYK+K+NSDGTVER+KARLVI
Sbjct: 60   VKDLKWREAMKSEIQALENNGTWTITHLPIGKKTLGCKWVYKVKHNSDGTVERYKARLVI 119

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQVEG+D+ ETFAPV KMVTVR  LAVAA K WELHQMDVHN FLHGDLQEEV+MK 
Sbjct: 120  LGNHQVEGVDYDETFAPVVKMVTVRTVLAVAAVKNWELHQMDVHNAFLHGDLQEEVFMKP 179

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF      MVC+L KSLYGLKQAPRCWFAKLS AL+ YGFKQS SDYSLF LQQ  + 
Sbjct: 180  PPGFHTTRPGMVCRLHKSLYGLKQAPRCWFAKLSTALKAYGFKQSLSDYSLFMLQQQGSI 239

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLIISGNDH  I  FK YL TCFHMKDLG LKYFLGVEVARSP GI L QRK
Sbjct: 240  LVVLVYVDDLIISGNDHAVISTFKTYLHTCFHMKDLGTLKYFLGVEVARSPTGILLSQRK 299

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SE GLLG KPA  P+EQNH L LA+G +L  P++YRRLVGRLIYLCFTRPE+SY
Sbjct: 300  YALDIVSEAGLLGCKPALTPLEQNHHLALANGRILAQPDKYRRLVGRLIYLCFTRPELSY 359

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH+LSQFMQQP+ EHWEAALRVVRYLK
Sbjct: 360  CVHILSQFMQQPKQEHWEAALRVVRYLK 387


>gb|PNY16257.1| copia protein (gag-int-pol protein) [Trifolium pratense]
          Length = 1461

 Score =  546 bits (1408), Expect = e-180
 Identities = 263/328 (80%), Positives = 289/328 (88%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKD RWR AM++EI+ALE N TWEV  LPP +K LGC+WVY+IKY SDGTVERFKARLVI
Sbjct: 959  VKDGRWRTAMQEEIQALEANKTWEVQSLPPGRKALGCKWVYRIKYRSDGTVERFKARLVI 1018

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQVEG+++TETFAPVAKMVTVRI LAVAA + WELHQMDVHN FLHGDLQEEV+MKM
Sbjct: 1019 LGNHQVEGVNYTETFAPVAKMVTVRIVLAVAATREWELHQMDVHNAFLHGDLQEEVFMKM 1078

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF+VQ +  VCKLRKSLYGLKQAPRCWFAKLSAAL+ YGF+QSY DYSLFTLQ    Q
Sbjct: 1079 PPGFQVQQSNKVCKLRKSLYGLKQAPRCWFAKLSAALKDYGFEQSYLDYSLFTLQHDDVQ 1138

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VL+YVDDLI+SG+   AIQKFKNYLSTCFHMKDLGVLKYFLGVEVARS  GIYLCQRK
Sbjct: 1139 LVVLIYVDDLIVSGSHPTAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSSTGIYLCQRK 1198

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SE G LGAKPA  P+EQNHRL LA+G  LD PE+YRRLVGRLIYLCFTRPE+SY
Sbjct: 1199 YALDIISESGHLGAKPASIPLEQNHRLPLANGRSLDNPEQYRRLVGRLIYLCFTRPELSY 1258

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
            SVH LSQFMQQP++EHWEAALRVVRYLK
Sbjct: 1259 SVHTLSQFMQQPKEEHWEAALRVVRYLK 1286


>gb|PNY12308.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1449

 Score =  543 bits (1398), Expect = e-179
 Identities = 262/328 (79%), Positives = 286/328 (87%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKD RW  AM++EI+ALEDN TW V  LP NKK LGC+WVYKIKY+SDGT+ERFKARLVI
Sbjct: 947  VKDNRWNLAMQQEIQALEDNNTWTVCPLPVNKKALGCKWVYKIKYHSDGTIERFKARLVI 1006

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQVEGID+TETFAPVAKMVTVRI LAVAAAK WELHQMDVHN FLHGDL+EEV+MK 
Sbjct: 1007 LGNHQVEGIDYTETFAPVAKMVTVRIVLAVAAAKRWELHQMDVHNAFLHGDLKEEVFMKP 1066

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF+     MVCKLRKSLYGLKQAPRCWFAKLS+AL+ YGF +SYSDYSLFTLQ    Q
Sbjct: 1067 PPGFQPSQPGMVCKLRKSLYGLKQAPRCWFAKLSSALKDYGFTRSYSDYSLFTLQDKDVQ 1126

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLII GNDHD+IQ+FKNYLS CFHMKDLG LKYFLGVEVARSP G++LCQRK
Sbjct: 1127 LVVLVYVDDLIICGNDHDSIQRFKNYLSRCFHMKDLGKLKYFLGVEVARSPAGVFLCQRK 1186

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SEVGLLGAKPA  P+EQNH L LA G  +  P+RYRRLVGRLIYLCFTRPE+SY
Sbjct: 1187 YALDIISEVGLLGAKPASTPLEQNHHLGLAKGAFVANPDRYRRLVGRLIYLCFTRPELSY 1246

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VHVLSQFMQQPR EHW+AALRVVRYLK
Sbjct: 1247 CVHVLSQFMQQPRTEHWDAALRVVRYLK 1274


>gb|PNX93622.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1454

 Score =  533 bits (1374), Expect = e-175
 Identities = 257/328 (78%), Positives = 279/328 (85%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKD RWREAM+ EI+ALE+NGTW VTHLPP KK LGC+WVYKIK+ SDGTVERFKARLVI
Sbjct: 952  VKDHRWREAMQSEIQALENNGTWSVTHLPPGKKKLGCKWVYKIKHKSDGTVERFKARLVI 1011

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ+EGID+ ETFAPVAKMVTVR  LAVAA K WELHQMDVHN FLHGDLQEEV+MK 
Sbjct: 1012 LGNHQIEGIDYNETFAPVAKMVTVRTVLAVAATKNWELHQMDVHNAFLHGDLQEEVFMKP 1071

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF      MVC+L KSLYGLKQAPRCWFAKLS AL+ YGF+QS  DYSLF LQ+    
Sbjct: 1072 PPGFHTTQPGMVCRLHKSLYGLKQAPRCWFAKLSTALKTYGFEQSLYDYSLFVLQRQDCF 1131

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLII+GNDH AI  FK YL TCFHMKDLG LKYFLGVEVARSP GI LCQRK
Sbjct: 1132 LAVLVYVDDLIITGNDHTAISAFKTYLHTCFHMKDLGTLKYFLGVEVARSPTGILLCQRK 1191

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SE GLLG+KPA  P+EQNHRL LA G++L  PE+YRRLVGRLIYLCFTRPE+SY
Sbjct: 1192 YALDIISETGLLGSKPASTPLEQNHRLALATGDILAQPEKYRRLVGRLIYLCFTRPELSY 1251

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH+LSQFMQQPR EHWEAALRVVRYLK
Sbjct: 1252 CVHILSQFMQQPRQEHWEAALRVVRYLK 1279


>gb|PNX92344.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1492

 Score =  534 bits (1375), Expect = e-175
 Identities = 255/328 (77%), Positives = 285/328 (86%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            +KD RWR+AMKKE++ALEDN TW +  LPP K+ +GCRWVYKIKYN+DGTVER+KARLVI
Sbjct: 990  MKDNRWRDAMKKEMQALEDNETWTLEPLPPGKRAIGCRWVYKIKYNADGTVERYKARLVI 1049

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GN Q+EGID+ ETFAPVAKMVTVR FLAVAA + WELHQMDVHN FLHGDL+EEVYM M
Sbjct: 1050 LGNKQIEGIDYNETFAPVAKMVTVRTFLAVAATRNWELHQMDVHNAFLHGDLEEEVYMHM 1109

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF  + + MVC+L+KSLYGLKQAPRCWFAKL AALR YGFKQSYSDYSLFTL +G  Q
Sbjct: 1110 PPGFGTRKSGMVCRLKKSLYGLKQAPRCWFAKLVAALRTYGFKQSYSDYSLFTLLRGDVQ 1169

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            I+VLVYVDDLI+SGNDH AIQ FK YLS CFHMKDLG LKYFLG+EVAR+ EGI+LCQRK
Sbjct: 1170 IHVLVYVDDLIVSGNDHAAIQLFKAYLSDCFHMKDLGALKYFLGIEVARNLEGIFLCQRK 1229

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SE GLLGAKPA FPMEQNH L LA+G  L  PE YRRLVGRLIYL  TRPE+SY
Sbjct: 1230 YALDIVSEAGLLGAKPASFPMEQNHNLSLAEGPCLSDPECYRRLVGRLIYLTATRPELSY 1289

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH+L+QFMQQPR++HWEAALRVVRYLK
Sbjct: 1290 CVHILAQFMQQPREQHWEAALRVVRYLK 1317


>gb|KYP66022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 634

 Score =  501 bits (1289), Expect = e-172
 Identities = 242/328 (73%), Positives = 273/328 (83%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKD RWR+AM+ EI ALE N TW +  LP  KK LGC+WVY+IKYNSDGT+ERFKARLV+
Sbjct: 132  VKDARWRQAMQAEIDALERNNTWSMQPLPSGKKALGCKWVYRIKYNSDGTIERFKARLVV 191

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ + I++TETFAPV KMVTVR  LAVAAAK WELHQMDVHN FLHGDL +EV+++M
Sbjct: 192  LGNHQEKDINYTETFAPVVKMVTVRTVLAVAAAKSWELHQMDVHNAFLHGDLHDEVFIRM 251

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF V    MVCKLRKSLYGLKQAPRCWF KLS AL  YGF+QS  D+SLFTL Q   Q
Sbjct: 252  PPGFSVSTPNMVCKLRKSLYGLKQAPRCWFTKLSHALISYGFQQSCLDHSLFTLHQEGVQ 311

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VL+YVDDLII+ N   AI++FK YL+ CFHMKDLG LKYFLG+EVAR+P GI+LCQRK
Sbjct: 312  LVVLIYVDDLIIACNVSSAIKRFKAYLNECFHMKDLGKLKYFLGIEVARNPTGIFLCQRK 371

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            YTLDI+SE GLLGAKPA  P+EQNH L LA G LL  PERYRRLVGRLIYLCFTRPE+S+
Sbjct: 372  YTLDIISEAGLLGAKPAGTPLEQNHHLSLATGALLANPERYRRLVGRLIYLCFTRPELSF 431

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
            SVH LSQFMQ+PR EHWEAALRVVR+LK
Sbjct: 432  SVHTLSQFMQEPRIEHWEAALRVVRFLK 459


>gb|KYP56739.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 581

 Score =  498 bits (1282), Expect = e-171
 Identities = 237/328 (72%), Positives = 271/328 (82%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            V+D +WR AM++E+ ALE NGTW +  LP  KK LGC+WVYKIK+NSDGT+ER+KARLVI
Sbjct: 79   VQDAKWRLAMQQELHALEANGTWSLETLPDGKKPLGCKWVYKIKHNSDGTIERYKARLVI 138

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ EG+D+TETFAPV KMVTVR+ LAVAA K WELHQMDVHN FLHGDL E+VYMK+
Sbjct: 139  LGNHQKEGVDYTETFAPVVKMVTVRLVLAVAATKKWELHQMDVHNAFLHGDLHEDVYMKL 198

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF       VCKL+KSLYGLKQAPRCWFAKLS+AL  +GF+QS  D+SLFTL     Q
Sbjct: 199  PPGFHASQPNHVCKLKKSLYGLKQAPRCWFAKLSSALINFGFRQSGCDHSLFTLLAHGVQ 258

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLII GND  AIQ+FK YLS CFHMKDLG LKYFLGVEVAR+  GI+LCQRK
Sbjct: 259  MMVLVYVDDLIICGNDSAAIQRFKEYLSKCFHMKDLGHLKYFLGVEVARNSSGIFLCQRK 318

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+ E GLLGA+P   P+EQNH+L LA G  +D P+RYRRLVGRLIYLCFTRPE+SY
Sbjct: 319  YALDIIQEAGLLGAQPVATPLEQNHQLGLATGRYIDQPDRYRRLVGRLIYLCFTRPELSY 378

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH LSQFMQQPR+EHW AA+R+VRYLK
Sbjct: 379  CVHTLSQFMQQPREEHWNAAIRIVRYLK 406


>dbj|GAU11040.1| hypothetical protein TSUD_113330 [Trifolium subterraneum]
          Length = 1355

 Score =  518 bits (1334), Expect = e-170
 Identities = 242/328 (73%), Positives = 283/328 (86%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKDERWR AM++EI+AL++NGTW +  LPP KK +GC+WVYKIKY+SDG+VER+KARLVI
Sbjct: 853  VKDERWRRAMQEEIQALDNNGTWILETLPPGKKAIGCKWVYKIKYHSDGSVERYKARLVI 912

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GN+Q EG+D+ ETFAPVAKMVTVR+FLAVA AK WELHQMDVHN FLHGDL EEVYMK 
Sbjct: 913  LGNNQTEGLDYNETFAPVAKMVTVRVFLAVAVAKQWELHQMDVHNAFLHGDLAEEVYMKP 972

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF    +  VC+LRKSLYGL+QAPRCWF+KL+ AL+ YGF+QSY+DYSLFTL +G  Q
Sbjct: 973  PPGFHPPTSGHVCRLRKSLYGLRQAPRCWFSKLAGALKRYGFEQSYADYSLFTLHKGSIQ 1032

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            +NVL+YVDDLIISGN++ AIQ FK YL+TCFHMKDLG LKYFLG+EVARSP G++LCQRK
Sbjct: 1033 VNVLIYVDDLIISGNNNTAIQTFKQYLNTCFHMKDLGTLKYFLGIEVARSPTGLFLCQRK 1092

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SE GLLGAKP  FP+EQNH+L LA+G  +  PERYRRLVGRLIYL  TRPE+SY
Sbjct: 1093 YALDIISEAGLLGAKPVGFPLEQNHQLPLANGPPISDPERYRRLVGRLIYLSVTRPELSY 1152

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH+L+QFM  PR EHW+AALRVVRYLK
Sbjct: 1153 CVHILAQFMHCPRQEHWDAALRVVRYLK 1180


>gb|PNX72659.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 647

 Score =  493 bits (1269), Expect = e-169
 Identities = 239/328 (72%), Positives = 269/328 (82%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            +KD RWR+AM+ EI ALE NGTW VT LPP KK LGC+WVYKIK+ SDG+VERFKARLVI
Sbjct: 145  MKDSRWRKAMQSEIHALEVNGTWTVTELPPGKKALGCKWVYKIKHKSDGSVERFKARLVI 204

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ EG+D+TETFAPV KMVTVR  LAVAA + WELHQMDVHN FLHGDL+E VYMK 
Sbjct: 205  LGNHQKEGVDYTETFAPVVKMVTVRTVLAVAATRDWELHQMDVHNAFLHGDLEEIVYMKP 264

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF  Q +  VCKL KSLYGLKQAPRCWFAKLSA+L+ YGF QS SDYSLF LQ+    
Sbjct: 265  PPGFLPQQSGTVCKLNKSLYGLKQAPRCWFAKLSASLKHYGFLQSRSDYSLFVLQKPGVH 324

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDL+I+G++H AI  FK YL  CFHMKDLG+LKYFLG+EVARS  GI LCQRK
Sbjct: 325  LVVLVYVDDLVITGDNHGAITDFKAYLHDCFHMKDLGILKYFLGIEVARSSTGISLCQRK 384

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI++E GL+GAKP+  P+EQNHRL LA       PE+YRRLVGRLIYLCFTRPE+SY
Sbjct: 385  YALDIIAETGLMGAKPSNVPIEQNHRLALAANVPFPHPEQYRRLVGRLIYLCFTRPELSY 444

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VHVLSQFM  P+ +HWEAALRVVRYLK
Sbjct: 445  CVHVLSQFMHAPKVDHWEAALRVVRYLK 472


>gb|KYP61781.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1413

 Score =  513 bits (1320), Expect = e-168
 Identities = 242/328 (73%), Positives = 286/328 (87%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            +KDE+W++AM+ EI+ALE+NGTW +  LPP KK +GC+WVY+IKYNSDG++ERFKARLVI
Sbjct: 911  MKDEQWQQAMQAEIQALENNGTWTLEPLPPGKKAIGCKWVYRIKYNSDGSIERFKARLVI 970

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GN+QVEG+D+ ETFAPVAKMVT+R  LAVAAA+ WELHQMDVHN FLHGDL+EEVYMK+
Sbjct: 971  LGNNQVEGLDYNETFAPVAKMVTMRTLLAVAAARKWELHQMDVHNAFLHGDLKEEVYMKL 1030

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF  Q +  VC+LRKSLYGLKQAPRCWFAKL+ AL+ YGF QS SD+SLFTLQ+ + Q
Sbjct: 1031 PPGFRSQASGKVCRLRKSLYGLKQAPRCWFAKLAGALKRYGFAQSSSDHSLFTLQRERVQ 1090

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            ++VLVYVDDL+ISGND+ AI+ FK YL+ CFHMKDLG+LKYFLG+EVAR+  GI+LCQRK
Sbjct: 1091 LHVLVYVDDLVISGNDNAAIKAFKLYLNACFHMKDLGMLKYFLGIEVARNSTGIFLCQRK 1150

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SEVGLLGAKPA FPM+Q+H+L LA G LL  PERYRRLVGRLIYL  TRPE+SY
Sbjct: 1151 YALDIISEVGLLGAKPAGFPMDQHHQLPLAKGTLLPDPERYRRLVGRLIYLSVTRPELSY 1210

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH L+QFMQ PR EHW+AALRVVRYLK
Sbjct: 1211 CVHTLAQFMQHPRQEHWDAALRVVRYLK 1238


>gb|PNX92993.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1472

 Score =  513 bits (1322), Expect = e-167
 Identities = 244/328 (74%), Positives = 282/328 (85%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VK ++WR AM+ EI+ALE+N TW V  LP  KK +GC+WVYKIKY+SDG++ER+KARLVI
Sbjct: 970  VKYKQWRTAMQLEIQALENNNTWTVETLPHGKKSIGCKWVYKIKYHSDGSIERYKARLVI 1029

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GN+QVEG+D+ ETFAPVAKMVTVR FLAVAAA+ WELHQMDVHN FLHGDL+EE+YMK+
Sbjct: 1030 LGNNQVEGLDYNETFAPVAKMVTVRTFLAVAAARKWELHQMDVHNAFLHGDLEEEIYMKL 1089

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF        C+LRKSLYGLKQAPRCWFAKLSAAL+ YGFKQS SDYSLFTL +G  Q
Sbjct: 1090 PPGFHSSAPNQACRLRKSLYGLKQAPRCWFAKLSAALKKYGFKQSGSDYSLFTLHKGHVQ 1149

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            +NVLVYVDDLI+SGND  AIQ FKNYLSTCF+MKDLG+L+YFLG+EVAR+  GI+LCQRK
Sbjct: 1150 LNVLVYVDDLIVSGNDTSAIQSFKNYLSTCFYMKDLGMLRYFLGIEVARNSTGIFLCQRK 1209

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SEVG+LGAKPA+ PM+QNH L L DG LL  PE+YRRLVGRLIYL  TRPE+SY
Sbjct: 1210 YALDIISEVGMLGAKPAQIPMDQNHHLSLVDGPLLSEPEKYRRLVGRLIYLSVTRPELSY 1269

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH+L+QFMQQPR  HWEAALRVV+YLK
Sbjct: 1270 CVHMLAQFMQQPRLPHWEAALRVVKYLK 1297


>gb|KYP75798.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 421

 Score =  478 bits (1231), Expect = e-166
 Identities = 229/328 (69%), Positives = 264/328 (80%)
 Frame = -3

Query: 984 VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
           ++D +WR AM++E+ ALE NGTW +  LP  KK LGC WVYKIK+ SDGT+ER+KARLVI
Sbjct: 13  MQDAKWRLAMQQELHALEANGTWSLETLPDGKKPLGCNWVYKIKHTSDGTIERYKARLVI 72

Query: 804 FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
            GNHQ EG+D+TETFAPV KMVTVR+   VAA K  ELHQMDVHN FLHGDL E+VYMK+
Sbjct: 73  LGNHQKEGVDYTETFAPVVKMVTVRLVFVVAATKKSELHQMDVHNAFLHGDLHEDVYMKL 132

Query: 624 PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
           PPGF       VCKL+KSLYGLKQAPRCWFAKLS+AL  +GF+QS  D+SLFTL     Q
Sbjct: 133 PPGFHASQPNHVCKLKKSLYGLKQAPRCWFAKLSSALINFGFRQSGCDHSLFTLLVHGVQ 192

Query: 444 INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
           + VLVYVDDLII GND  AIQ+FK YLS CFHMKDLG LKYFLGVEVAR+  GI+LCQRK
Sbjct: 193 MMVLVYVDDLIICGNDSAAIQRFKEYLSKCFHMKDLGHLKYFLGVEVARNSSGIFLCQRK 252

Query: 264 YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
           Y LDI+ E GLLGA+P   P+EQNH+L LA G  +D P+RYRRLVGRLIYLCFTR ++SY
Sbjct: 253 YALDIIQEAGLLGAQPVATPLEQNHQLGLATGRYIDQPDRYRRLVGRLIYLCFTRSKLSY 312

Query: 84  SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
            VH LS FMQQPR+EHW AA+R+VRYLK
Sbjct: 313 CVHTLSHFMQQPREEHWNAAIRIVRYLK 340


>dbj|GAU21017.1| hypothetical protein TSUD_201660 [Trifolium subterraneum]
          Length = 1252

 Score =  503 bits (1296), Expect = e-166
 Identities = 240/328 (73%), Positives = 279/328 (85%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VK ++WR AM+ EI+ALE+N TW +  LP  KK +GC+WVYKIKY+SDG++ER+KARLVI
Sbjct: 750  VKYKQWRTAMQLEIQALENNNTWTIETLPHGKKSIGCKWVYKIKYHSDGSIERYKARLVI 809

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GN+QVEG+D+ ETFAPVAKMVTVR FLAVAAA+ WELHQMDVHN FLHGDL+EE+YMK+
Sbjct: 810  LGNNQVEGLDYNETFAPVAKMVTVRTFLAVAAARNWELHQMDVHNAFLHGDLEEEIYMKL 869

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF        C+LRKSLYGLKQAPRCWFAKL+AAL+ YGFKQS SDYSLFTL +   Q
Sbjct: 870  PPGFYSSAPNQACRLRKSLYGLKQAPRCWFAKLAAALKKYGFKQSGSDYSLFTLHKDDVQ 929

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            +NVLVYVDDLI+SGND  AIQ FK+YLSTCF+MKDLG+L+YFLG+EVAR+  GI+LCQRK
Sbjct: 930  LNVLVYVDDLIVSGNDTSAIQSFKSYLSTCFYMKDLGLLRYFLGIEVARNSTGIFLCQRK 989

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SEVGLLGAKPA  PM+QNH L L D  LL  PE+YRRLVGRLIYL  TRPE+SY
Sbjct: 990  YALDIISEVGLLGAKPAHIPMDQNHHLSLVDEPLLSEPEKYRRLVGRLIYLSVTRPELSY 1049

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH+L+QFMQQPR  HWEAALRVV+YLK
Sbjct: 1050 CVHMLAQFMQQPRLPHWEAALRVVKYLK 1077


>gb|KYP63761.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1048

 Score =  498 bits (1282), Expect = e-166
 Identities = 237/328 (72%), Positives = 271/328 (82%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            V+D +WR AM++E+ ALE NGTW +  LP  KK LGC+WVYKIK+NSDGT+ER+KARLVI
Sbjct: 546  VQDAKWRLAMQQELHALEANGTWSLETLPDGKKPLGCKWVYKIKHNSDGTIERYKARLVI 605

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ EG+D+TETFAPV KMVTVR+ LAVAA K WELHQMDVHN FLHGDL E+VYMK+
Sbjct: 606  LGNHQKEGVDYTETFAPVVKMVTVRLVLAVAATKKWELHQMDVHNAFLHGDLHEDVYMKL 665

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF       VCKL+KSLYGLKQAPRCWFAKLS+AL  +GF+QS  D+SLFTL     Q
Sbjct: 666  PPGFHASQPNHVCKLKKSLYGLKQAPRCWFAKLSSALINFGFRQSGCDHSLFTLLAHGVQ 725

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLII GND  AIQ+FK YLS CFHMKDLG LKYFLGVEVAR+  GI+LCQRK
Sbjct: 726  MMVLVYVDDLIICGNDSAAIQRFKEYLSKCFHMKDLGHLKYFLGVEVARNSSGIFLCQRK 785

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+ E GLLGA+P   P+EQNH+L LA G  +D P+RYRRLVGRLIYLCFTRPE+SY
Sbjct: 786  YALDIIQEAGLLGAQPVATPLEQNHQLGLATGRYIDQPDRYRRLVGRLIYLCFTRPELSY 845

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH LSQFMQQPR+EHW AA+R+VRYLK
Sbjct: 846  CVHTLSQFMQQPREEHWNAAIRIVRYLK 873


>ref|XP_017415205.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X3 [Vigna angularis]
          Length = 982

 Score =  496 bits (1277), Expect = e-166
 Identities = 235/328 (71%), Positives = 274/328 (83%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            V+D RWR+AM  EI AL++NGTW++  LP  KK LGC+W+YKIKY+SDG++ERFKARLV+
Sbjct: 480  VRDVRWRDAMTNEIDALQNNGTWDIIALPAGKKPLGCKWIYKIKYHSDGSIERFKARLVV 539

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQVEGID+ ETFAPVAKMVT+R  LAVA AK WELHQMDVHN FLHGDL E VYMK+
Sbjct: 540  LGNHQVEGIDYDETFAPVAKMVTIRTILAVAVAKDWELHQMDVHNAFLHGDLDEAVYMKL 599

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF V    +VC+LRKS+YGL+QAPRCWFAKLS AL  YGF++S SD+SLFT ++   Q
Sbjct: 600  PPGFLVSQNGLVCRLRKSIYGLRQAPRCWFAKLSNALDQYGFQRSQSDHSLFTFRKKGIQ 659

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDL+I+GN  + I KFK+YL  CFHMKDLG LKYFLGVEVARS  G++LCQRK
Sbjct: 660  LVVLVYVDDLVIAGNHGEEIAKFKSYLHQCFHMKDLGKLKYFLGVEVARSSTGLFLCQRK 719

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI++E GLLG KP   P+E+NHRL LA+ +LL  P +YRRLVGRLIYLCFTRPE+SY
Sbjct: 720  YALDIIAETGLLGGKPVPTPIEENHRLALANDDLLSDPSQYRRLVGRLIYLCFTRPELSY 779

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
            SVHVLSQFMQQPR EHW AALRVVRYLK
Sbjct: 780  SVHVLSQFMQQPRQEHWRAALRVVRYLK 807


>gb|KYP43009.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1063

 Score =  498 bits (1282), Expect = e-165
 Identities = 237/328 (72%), Positives = 271/328 (82%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            V+D +WR AM++E+ ALE NGTW +  LP  KK LGC+WVYKIK+NSDGT+ER+KARLVI
Sbjct: 586  VQDAKWRLAMQQELHALEANGTWSLETLPDGKKPLGCKWVYKIKHNSDGTIERYKARLVI 645

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ EG+D+TETFAPV KMVTVR+ LAVAA K WELHQMDVHN FLHGDL E+VYMK+
Sbjct: 646  LGNHQKEGVDYTETFAPVVKMVTVRLVLAVAATKKWELHQMDVHNAFLHGDLHEDVYMKL 705

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF       VCKL+KSLYGLKQAPRCWFAKLS+AL  +GF+QS  D+SLFTL     Q
Sbjct: 706  PPGFHASQPNHVCKLKKSLYGLKQAPRCWFAKLSSALINFGFRQSGCDHSLFTLLAHGVQ 765

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLII GND  AIQ+FK YLS CFHMKDLG LKYFLGVEVAR+  GI+LCQRK
Sbjct: 766  MMVLVYVDDLIICGNDSAAIQRFKEYLSKCFHMKDLGHLKYFLGVEVARNSSGIFLCQRK 825

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+ E GLLGA+P   P+EQNH+L LA G  +D P+RYRRLVGRLIYLCFTRPE+SY
Sbjct: 826  YALDIIQEAGLLGAQPVATPLEQNHQLGLATGRYIDQPDRYRRLVGRLIYLCFTRPELSY 885

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH LSQFMQQPR+EHW AA+R+VRYLK
Sbjct: 886  CVHTLSQFMQQPREEHWNAAIRIVRYLK 913


>gb|KYP77073.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1069

 Score =  498 bits (1282), Expect = e-165
 Identities = 237/328 (72%), Positives = 271/328 (82%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            V+D +WR AM++E+ ALE NGTW +  LP  KK LGC+WVYKIK+NSDGT+ER+KARLVI
Sbjct: 567  VQDAKWRLAMQQELHALEANGTWSLETLPDGKKPLGCKWVYKIKHNSDGTIERYKARLVI 626

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GNHQ EG+D+TETFAPV KMVTVR+ LAVAA K WELHQMDVHN FLHGDL E+VYMK+
Sbjct: 627  LGNHQKEGVDYTETFAPVVKMVTVRLVLAVAATKKWELHQMDVHNAFLHGDLHEDVYMKL 686

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF       VCKL+KSLYGLKQAPRCWFAKLS+AL  +GF+QS  D+SLFTL     Q
Sbjct: 687  PPGFHASQPNHVCKLKKSLYGLKQAPRCWFAKLSSALINFGFRQSGCDHSLFTLLAHGVQ 746

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            + VLVYVDDLII GND  AIQ+FK YLS CFHMKDLG LKYFLGVEVAR+  GI+LCQRK
Sbjct: 747  MMVLVYVDDLIICGNDSAAIQRFKEYLSKCFHMKDLGHLKYFLGVEVARNSSGIFLCQRK 806

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+ E GLLGA+P   P+EQNH+L LA G  +D P+RYRRLVGRLIYLCFTRPE+SY
Sbjct: 807  YALDIIQEAGLLGAQPVATPLEQNHQLGLATGRYIDQPDRYRRLVGRLIYLCFTRPELSY 866

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VH LSQFMQQPR+EHW AA+R+VRYLK
Sbjct: 867  CVHTLSQFMQQPREEHWNAAIRIVRYLK 894


>gb|PNX92904.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1457

 Score =  507 bits (1306), Expect = e-165
 Identities = 238/328 (72%), Positives = 275/328 (83%)
 Frame = -3

Query: 984  VKDERWREAMKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVI 805
            VKD RWREAMKKEI+ALE+N TW +  LPP KK +GC+WVYKIKYNSDGTVER+KARLVI
Sbjct: 955  VKDARWREAMKKEIEALENNETWTLETLPPGKKAIGCKWVYKIKYNSDGTVERYKARLVI 1014

Query: 804  FGNHQVEGIDFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKM 625
             GN Q+EG+D+ ETFAPVAKM TVR  +AVAAAK WELHQMDVHN FLHGDL EEVYM +
Sbjct: 1015 LGNRQIEGLDYNETFAPVAKMATVRTLIAVAAAKNWELHQMDVHNAFLHGDLSEEVYMHL 1074

Query: 624  PPGFEVQNARMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQ 445
            PPGF   +   VC+LRKSLYGL+QAPRCWF KL+ AL+ YGF+QS SDYSLFT    + Q
Sbjct: 1075 PPGFSTTHKSKVCRLRKSLYGLRQAPRCWFFKLATALKEYGFEQSKSDYSLFTYSSNKVQ 1134

Query: 444  INVLVYVDDLIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRK 265
            +NVL+YVDDL+I+GN   A+ +FK YLS CFHMKDLG LKYFLG+EVAR P+GI+LCQRK
Sbjct: 1135 LNVLIYVDDLVIAGNVVKAVIEFKQYLSKCFHMKDLGELKYFLGIEVARGPQGIFLCQRK 1194

Query: 264  YTLDILSEVGLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISY 85
            Y LDI+SE GLLGAKPA FPMEQNH+L +A G  ++ PE+YRRLVGRLIYL  TRPE+SY
Sbjct: 1195 YALDIVSEAGLLGAKPALFPMEQNHQLAMAQGEAMENPEQYRRLVGRLIYLTITRPELSY 1254

Query: 84   SVHVLSQFMQQPRDEHWEAALRVVRYLK 1
             VHVL+QFMQ P++ HWEAALRVVRYLK
Sbjct: 1255 CVHVLAQFMQHPQEAHWEAALRVVRYLK 1282


>gb|KYP57917.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 494

 Score =  477 bits (1227), Expect = e-164
 Identities = 232/319 (72%), Positives = 262/319 (82%)
 Frame = -3

Query: 957 MKKEIKALEDNGTWEVTHLPPNKKVLGCRWVYKIKYNSDGTVERFKARLVIFGNHQVEGI 778
           M+ EI ALE N TW +  LP  KK LGC+WVY+IKYNSDGT+ERFKARLV+ GNHQ + I
Sbjct: 1   MQAEIDALERNNTWSMQPLPSGKKALGCKWVYRIKYNSDGTIERFKARLVVLGNHQEKDI 60

Query: 777 DFTETFAPVAKMVTVRIFLAVAAAKWWELHQMDVHNPFLHGDLQEEVYMKMPPGFEVQNA 598
           ++TETFAPV KMVTVR  LAVAAAK WELHQMDVHN FLHGDL +EV+++MPPGF V   
Sbjct: 61  NYTETFAPVVKMVTVRTVLAVAAAKSWELHQMDVHNAFLHGDLHDEVFIRMPPGFSVSTP 120

Query: 597 RMVCKLRKSLYGLKQAPRCWFAKLSAALRGYGFKQSYSDYSLFTLQQGQTQINVLVYVDD 418
            MVCKLRKSLYGLKQAPRCWF KLS AL  YGF+QS  D+SLFTL Q   Q+ VL+YVDD
Sbjct: 121 NMVCKLRKSLYGLKQAPRCWFTKLSHALISYGFQQSCLDHSLFTLHQEGVQLVVLIYVDD 180

Query: 417 LIISGNDHDAIQKFKNYLSTCFHMKDLGVLKYFLGVEVARSPEGIYLCQRKYTLDILSEV 238
           LII+ N   AI++FK YL+ CFHMKDLG LKYFLG+EVAR+P GI+LCQRKYTL I+SE 
Sbjct: 181 LIIACNVSSAIKRFKAYLNECFHMKDLGKLKYFLGIEVARNPTGIFLCQRKYTLKIISEA 240

Query: 237 GLLGAKPARFPMEQNHRLMLADGNLLDGPERYRRLVGRLIYLCFTRPEISYSVHVLSQFM 58
           GLLGAKP   P+EQNHRL LA G LL  PE YRRLVGRLIYLCFTRP +S+SVH LSQFM
Sbjct: 241 GLLGAKPVGTPLEQNHRLSLATGALLANPECYRRLVGRLIYLCFTRPVLSFSVHTLSQFM 300

Query: 57  QQPRDEHWEAALRVVRYLK 1
           Q+PR EHWEAALRVVR+LK
Sbjct: 301 QEPRIEHWEAALRVVRFLK 319