BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00023523
         (363 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74951.1| hypothetical protein VITISV_030567, partial [Vit...   158   2e-42
ref|XP_015383571.1| PREDICTED: uncharacterized protein LOC107176...   147   2e-40
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...   150   1e-39
gb|KYP41416.1| Retrovirus-related Pol polyprotein from transposo...   138   6e-39
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]   148   7e-39
dbj|GAU17915.1| hypothetical protein TSUD_330400, partial [Trifo...   148   7e-39
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo...   139   1e-38
dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subt...   146   2e-38
ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424...   145   9e-38
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   144   1e-37
ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177...   143   3e-37
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   142   8e-37
dbj|GAU21262.1| hypothetical protein TSUD_286720 [Trifolium subt...   142   8e-37
ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178...   140   3e-36
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...   140   4e-36
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   140   4e-36
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   140   5e-36
gb|KYP61012.1| Retrovirus-related Pol polyprotein from transposo...   134   6e-36
gb|PNX78574.1| retrovirus-related Pol polyprotein from transposo...   139   8e-36
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   136   8e-35

>emb|CAN74951.1| hypothetical protein VITISV_030567, partial [Vitis vinifera]
          Length = 2203

 Score =  158 bits (400), Expect = 2e-42
 Identities = 69/120 (57%), Positives = 87/120 (72%)
 Frame = +3

Query: 3   AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
           A T SCDGYKYY+ F+D FT +TWI+P   KS   + VL FI++++R+F TK+K  Q D 
Sbjct: 513 AHTTSCDGYKYYIAFVDAFTNYTWIYPRQQKSQATSIVLQFIALVDRKFPTKLKCLQTDW 572

Query: 183 GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           GGE+  L S  Q  GI FRHPCPH H QNG  ERKH+ IV++GLTLL+++QLPF FWW A
Sbjct: 573 GGEFHPLQSLLQKKGILFRHPCPHVHQQNGKVERKHRSIVEIGLTLLAKSQLPFTFWWHA 632



 Score = 71.2 bits (173), Expect = 7e-12
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +3

Query: 9    TPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGG 188
            TPS  G  Y    +D+F+R+TW+  L  KS+ +     F + ++ +    I   + D G 
Sbjct: 1108 TPSLGGKSYAYVIVDDFSRYTWVLFLSQKSEAFYEFSKFCNKVQNEKGFSITCIRSDHGR 1167

Query: 189  EYRKLSSQ--FQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
            E+     +      GIN     P T  QNG+ ERK++ + ++  T+L++  LP  FW +A
Sbjct: 1168 EFENFDFEEYCNKHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYFWAEA 1227


>ref|XP_015383571.1| PREDICTED: uncharacterized protein LOC107176065 [Citrus sinensis]
          Length = 356

 Score =  147 bits (370), Expect = 2e-40
 Identities = 64/117 (54%), Positives = 84/117 (71%)
 Frame = +3

Query: 9   TPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGG 188
           T S +GYKYY+ F+D+ TR+TWI+PL  KS  +     F + +E QF+TKIK  Q D GG
Sbjct: 235 TVSRNGYKYYISFVDDCTRYTWIYPLKLKSQAFEVFKLFKAQVENQFNTKIKELQSDLGG 294

Query: 189 EYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWD 359
           E+R  S     +GI FRH CP+TH QNG+ ERKH+HI++L LTLL+QA LPF+FWW+
Sbjct: 295 EFRVFSDFLNQNGIKFRHSCPYTHHQNGLVERKHRHIIELALTLLAQANLPFQFWWE 351


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
           [Trifolium pratense]
          Length = 835

 Score =  150 bits (379), Expect = 1e-39
 Identities = 64/116 (55%), Positives = 82/116 (70%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  G+KYYVHF+D+FTRFTWI+PL  KSD     + F +M+E QFS KIK  QCD GGEY
Sbjct: 514 SSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFSKKIKTIQCDGGGEY 573

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      +GI FR  CP+T  QNG  ERKH+HI + GLTLL+QA++P  +WW+A
Sbjct: 574 KPVQKHAIEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEA 629


>gb|KYP41416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 201

 Score =  138 bits (348), Expect = 6e-39
 Identities = 63/120 (52%), Positives = 81/120 (67%)
 Frame = +3

Query: 3   AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
           A   S  G++YYVHFL++F +FTW FPL  KSD     + F SM++ QF+ KIK  QCD 
Sbjct: 68  APISSSSGFRYYVHFLNDFNKFTWTFPLKQKSDF----MQFKSMVKNQFNRKIKFLQCDG 123

Query: 183 GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           GGEY+ L    Q  GI     C +T +QNG  ERKH+H+V+LGLTLLSQA++P  FWW+A
Sbjct: 124 GGEYKALEKLIQECGIQLGMSCQYTSAQNGQVERKHRHVVELGLTLLSQAKMPLHFWWEA 183


>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
          Length = 1000

 Score =  148 bits (373), Expect = 7e-39
 Identities = 63/116 (54%), Positives = 84/116 (72%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  G+KYYVHF+D+F+RFTWIFPL  KSD     + F ++ E QF+ KIK  QCD GGEY
Sbjct: 513 SPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEY 572

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      +GI FR  CP+T  QNG  ERKH+H+V+LGLTLL+QA++P ++WW+A
Sbjct: 573 KAVQKVSIEAGIQFRMSCPYTSQQNGRAERKHRHVVELGLTLLAQAKMPLRYWWEA 628


>dbj|GAU17915.1| hypothetical protein TSUD_330400, partial [Trifolium subterraneum]
          Length = 1021

 Score =  148 bits (373), Expect = 7e-39
 Identities = 62/116 (53%), Positives = 82/116 (70%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  G+KYYVHF+D+FTRFTWI+PL  KSD     + F +M+E QF+ +IK  QCD GGEY
Sbjct: 413 SSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFNKRIKTIQCDGGGEY 472

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      +GI FR  CP+T  QNG  ERKH+HI + GLTLL+QA++P  +WW+A
Sbjct: 473 KAVQKHAIEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEA 528


>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 264

 Score =  139 bits (351), Expect = 1e-38
 Identities = 61/120 (50%), Positives = 80/120 (66%)
 Frame = +3

Query: 3   AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
           A   S  G+KYYVHFLD+F+RFTWI+PL  KSD       F +M E  F+ +IK  QCD 
Sbjct: 99  APVTSPSGFKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNMAENLFNKRIKTIQCDG 158

Query: 183 GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           GGEY+ + +    +GI FR  CP+T  QNG  ERKH+HI +  LTLL+QA++P  +WW+A
Sbjct: 159 GGEYKTVQNHAIEAGIQFRMSCPYTSQQNGRAERKHRHITEFSLTLLAQAKMPLHYWWEA 218


>dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subterraneum]
          Length = 1387

 Score =  146 bits (369), Expect = 2e-38
 Identities = 62/116 (53%), Positives = 83/116 (71%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  G+KYYVHF+D+F+RFTWIFPL  KSD     + F ++ E QF+ KIK  QCD GGEY
Sbjct: 507 SPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEY 566

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      +GI FR  CP+T  QNG  ERKH+H+ +LGLTLL+QA++P ++WW+A
Sbjct: 567 KAVQKVSIEAGIQFRMSCPYTSQQNGRAERKHRHVAELGLTLLAQAKMPLRYWWEA 622


>ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424043 [Ziziphus jujuba]
          Length = 1270

 Score =  145 bits (365), Expect = 9e-38
 Identities = 62/120 (51%), Positives = 84/120 (70%)
 Frame = +3

Query: 3    AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
            AAT S +GY+YY+HF+D+++RFTWI+P+  KS+      +F  M+ER F TK+K  Q D 
Sbjct: 702  AATVSKEGYRYYIHFIDDYSRFTWIYPMTVKSEALFIFKHFHVMVERLFDTKLKVVQSDW 761

Query: 183  GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
            GGEYR      Q  GI FRH CP+ H QNG  ERKH+HIV++GL+ L+QA +P  +WW+A
Sbjct: 762  GGEYRCFLPYLQQVGIKFRHSCPYMHQQNGRAERKHRHIVEVGLSFLAQAHMPLLYWWEA 821


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score =  144 bits (364), Expect = 1e-37
 Identities = 61/120 (50%), Positives = 86/120 (71%)
 Frame = +3

Query: 3   AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
           A   S  G+KYYV FLD+++RFTWI+PL  KSDV+   + F +++E QF+ +IK  QCD 
Sbjct: 434 APISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQCDG 493

Query: 183 GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           GGE++ LS     +GI  R  CP+T +QNG  ERKH+H+V+ GLTLL+QA++P  +WW+A
Sbjct: 494 GGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYWWEA 553


>ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177515 [Citrus sinensis]
          Length = 1143

 Score =  143 bits (361), Expect = 3e-37
 Identities = 64/116 (55%), Positives = 82/116 (70%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  GY+YYV F+D+ TRFTWIFPL +K +       F + IE+QFS  IK  Q D GGE+
Sbjct: 611 SPQGYRYYVSFVDDCTRFTWIFPLKTKDETLPVFKIFKTQIEKQFSRPIKCLQSDWGGEF 670

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           R   +   + GI FRH CP+TH+QNG+ ERKH+HI +LGLTLL+QA +P KFWWD+
Sbjct: 671 RSFVNYLLAEGIQFRHLCPYTHNQNGLVERKHRHITELGLTLLAQAAMPLKFWWDS 726


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  142 bits (358), Expect = 8e-37
 Identities = 59/113 (52%), Positives = 80/113 (70%)
 Frame = +3

Query: 24  GYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEYRKL 203
           G+KYYVHF+D+F+RFTWI+PL  KS+     + F ++ E QF+ +IK  QCD GGEY+ +
Sbjct: 510 GFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTENQFNKRIKVIQCDGGGEYKPV 569

Query: 204 SSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
                 +GI FR  CP+T  QNG  ERKH+HI + GLTLL+QAQ+P  +WW+A
Sbjct: 570 QKLAVEAGIQFRMSCPYTSQQNGRAERKHRHITEFGLTLLAQAQMPLHYWWEA 622


>dbj|GAU21262.1| hypothetical protein TSUD_286720 [Trifolium subterraneum]
          Length = 743

 Score =  142 bits (357), Expect = 8e-37
 Identities = 60/116 (51%), Positives = 80/116 (68%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S    KYYVHF+D+F+RFTWIFPL  KS+       F +M+E QF+ KI+  QCD GGEY
Sbjct: 336 SSSNIKYYVHFIDDFSRFTWIFPLKQKSETIHAFTQFKNMVENQFNKKIRVIQCDGGGEY 395

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      SGI FR  CP+T  QNG  ERKH+H+ +LG+TLL+QA++P  +WW+A
Sbjct: 396 KPVQKVAIESGIQFRMSCPYTSQQNGRAERKHRHVTELGITLLAQAKMPLHYWWEA 451


>ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178344 [Citrus sinensis]
          Length = 877

 Score =  140 bits (353), Expect = 3e-36
 Identities = 63/120 (52%), Positives = 80/120 (66%)
 Frame = +3

Query: 3   AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
           A   S  GY YY+  LD++TR+TWIFPL +KS   +  ++F +MIE   + +IK  Q D 
Sbjct: 527 APITSSQGYSYYLSILDDYTRYTWIFPLTTKSKTLSAFIDFKNMIENCLNLRIKCLQTDW 586

Query: 183 GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           GGE+R   S     GI FRHPCP+ H QN   ERKH+HIV+ GLTLL+QA LP KFWW+A
Sbjct: 587 GGEFRPFVSYLSEQGIQFRHPCPYIHHQNRKIERKHRHIVETGLTLLAQAHLPLKFWWNA 646


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score =  140 bits (353), Expect = 4e-36
 Identities = 58/116 (50%), Positives = 82/116 (70%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  G+KYYVHF+D+F+RFTWI+PL  KS+       F +++E QF+ +IK  QCD GGEY
Sbjct: 238 SNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFKTLVENQFNKRIKIVQCDGGGEY 297

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      +GI FR  CP+T  QNG  ERKH+H+ +LGLT+L+QA++P  +WW+A
Sbjct: 298 KAVQKLALEAGIQFRMSCPYTSQQNGRAERKHRHVAELGLTMLAQARMPLCYWWEA 353


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 1242

 Score =  140 bits (353), Expect = 4e-36
 Identities = 60/116 (51%), Positives = 81/116 (69%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S   +KYYVHFLD+F+RFTWIFPL  KS+       F +++E QF+ KIK  +CD GGEY
Sbjct: 514 SQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAFNQFKNLVENQFNKKIKVIRCDGGGEY 573

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      SGI F+  CP+T  QNG  ERKH+H+ +LGLTLL+QA++P  +WW+A
Sbjct: 574 KPVQKCAIDSGIQFQMSCPYTSQQNGRAERKHRHVTELGLTLLAQAKMPLSYWWEA 629


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  140 bits (352), Expect = 5e-36
 Identities = 63/120 (52%), Positives = 85/120 (70%)
 Frame = +3

Query: 3   AATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDS 182
           A+TPS  G++YY+HF+D ++RFTWI+ L  KS+ +   L+F S +E Q   KIKA Q D 
Sbjct: 574 ASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQSDW 633

Query: 183 GGEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           GGEYR  +    S+GI  R  CP+TH QNG+ ERKH+HIV+ G+ LL+QA LPFK+W +A
Sbjct: 634 GGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEA 693


>gb|KYP61012.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 340

 Score =  134 bits (338), Expect = 6e-36
 Identities = 62/113 (54%), Positives = 80/113 (70%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  GY YYV F+D F+++TWI+PL SK +  +    F +M+E QF+TKIK+ Q D GGEY
Sbjct: 165 SFSGYLYYVAFIDAFSKYTWIYPLKSKVETLSIFQQFKAMVELQFNTKIKSVQSDWGGEY 224

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFW 353
           R  +S   ++GI  R  CPHTH QNG+ ERKH+HIV++GLTLL  A LP KFW
Sbjct: 225 RAFTSFLATNGIKHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFW 277


>gb|PNX78574.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 677

 Score =  139 bits (349), Expect = 8e-36
 Identities = 58/116 (50%), Positives = 80/116 (68%)
 Frame = +3

Query: 15  SCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSGGEY 194
           S  G+KYYVHF+D+ +RFTWI+PL  KSD     + F +M+E QF+ +IK  QCD GGE+
Sbjct: 515 SISGFKYYVHFIDDSSRFTWIYPLKQKSDTIHAFMQFKNMVENQFNKRIKIIQCDGGGEF 574

Query: 195 RKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFWWDA 362
           + +      +GI FR  CP+T  QNG  ERKH+H+ +LGLTLL+QA +   +WW+A
Sbjct: 575 KPVQKVALETGIKFRMSCPYTSQQNGRAERKHRHVAELGLTLLAQANMSLHYWWEA 630


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
 gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  136 bits (343), Expect = 8e-35
 Identities = 61/116 (52%), Positives = 83/116 (71%)
 Frame = +3

Query: 6   ATPSCDGYKYYVHFLDEFTRFTWIFPLVSKSDVYTTVLNFISMIERQFSTKIKAFQCDSG 185
           A  S   YKYYV F+D++++FTWI+ L  KSDVY +   F  ++ER F  KI AFQ D G
Sbjct: 526 AIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWG 585

Query: 186 GEYRKLSSQFQSSGINFRHPCPHTHSQNGMPERKHQHIVDLGLTLLSQAQLPFKFW 353
           GEY KL++ F++ GI+ +  CPHTH QNG  ERKH+HIV++GL LL+Q+ +P K+W
Sbjct: 586 GEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYW 641