BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00022273
         (523 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59248.1| polyprotein [Lychnis mottle virus]                     355   e-114
gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]           347   e-113
gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]           342   e-111
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   195   5e-60
gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot ...   201   2e-57
gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot ...   199   8e-57
gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot ...   198   1e-56
gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot ...   196   6e-56
gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot ...   196   6e-56
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...   195   1e-54
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...   183   2e-50

>gb|AKN59248.1| polyprotein [Lychnis mottle virus]
          Length = 994

 Score =  355 bits (910), Expect = e-114
 Identities = 166/172 (96%), Positives = 169/172 (98%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL+FPV+PSVHLPRTA GFEASLEQQ PLMHRSQENCQWRGTLRYHLTARLEGATEQ VL
Sbjct: 801  FLYFPVSPSVHLPRTAGGFEASLEQQRPLMHRSQENCQWRGTLRYHLTARLEGATEQLVL 860

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQD+PFVEFTTPPGRWTN
Sbjct: 861  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTN 920

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF
Sbjct: 921  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 972


>gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 789

 Score =  347 bits (890), Expect = e-113
 Identities = 159/172 (92%), Positives = 166/172 (96%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL+FPVTPSVHLPRTA  F A LEQQCPLMHRSQENCQWRGTL+YHLTARLEGAT+Q +L
Sbjct: 596  FLYFPVTPSVHLPRTAGNFVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLIL 655

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            PHRSLTFSAVLLSKILPAPCF+DNSTFKPLLPLLSV+DTFSL QD+PFVEFTTPPGRWTN
Sbjct: 656  PHRSLTFSAVLLSKILPAPCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTN 715

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF
Sbjct: 716  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 767


>gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 789

 Score =  342 bits (878), Expect = e-111
 Identities = 157/172 (91%), Positives = 166/172 (96%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL+FPV+PSVHLPRTA GF+ASLEQQCPLMHRSQENCQWRGTL+YHLTARLEGATEQ VL
Sbjct: 596  FLYFPVSPSVHLPRTAGGFKASLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATEQLVL 655

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            PHRSLTFSAVLLS+ILPAPCFVD STF+PLLPLLSV+DTFSL QD+PFVEFTTPPGRW N
Sbjct: 656  PHRSLTFSAVLLSRILPAPCFVDKSTFQPLLPLLSVKDTFSLSQDHPFVEFTTPPGRWIN 715

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATEQYTWRTCPVWVLLQFPPKTM QLHVRDVSLWVEP+IEYRHPMGGF
Sbjct: 716  THFGATEQYTWRTCPVWVLLQFPPKTMTQLHVRDVSLWVEPNIEYRHPMGGF 767


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  195 bits (496), Expect = 5e-60
 Identities = 89/172 (51%), Positives = 111/172 (64%)
 Frame = +3

Query: 6   FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
           FL FP TPS H+P+    FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 42  FLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVL 101

Query: 186 PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
           P R +   A +L  I+  PCF++  TF  ++P+   R+T  L        + TPP RW N
Sbjct: 102 PLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVN 161

Query: 366 THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
           THFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP + +RH +GGF
Sbjct: 162 THFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGF 213


>gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  201 bits (510), Expect = 2e-57
 Identities = 95/172 (55%), Positives = 115/172 (66%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL FP+TPS H+P+ A  FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 519  FLFFPMTPSSHMPKLAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVL 578

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R + F A +L  IL  PCFV+  TF  ++P+   R+T  L        + TPP RW N
Sbjct: 579  PMRPVCFGATVLDNILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVN 638

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATE Y  RTCP WVLLQFP +  + L VRDVSLWVEP+I +RH +GGF
Sbjct: 639  THFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGF 690


>gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  199 bits (505), Expect = 8e-57
 Identities = 93/172 (54%), Positives = 115/172 (66%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL FP+TPS H+P+ A  FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VL
Sbjct: 519  FLFFPMTPSSHMPKLAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVL 578

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R + F A +L  IL  PCFV+  TF  ++P+   R+T  L        + TPP RW N
Sbjct: 579  PMRPVCFGATVLDNILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVN 638

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATE Y  RTCP WVLLQFP +  + L +RDVSLWVEP+I +RH +GGF
Sbjct: 639  THFGATESYGVRTCPAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGF 690


>gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  198 bits (504), Expect = 1e-56
 Identities = 93/172 (54%), Positives = 114/172 (66%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL FP+TPS H+P+    FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 519  FLFFPMTPSSHMPKLVGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVL 578

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R + F A +L  IL  PCFV+  TF  ++P+   R+T  L        + TPP RW N
Sbjct: 579  PMRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVN 638

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP+I +RH +GGF
Sbjct: 639  THFGATESYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGF 690


>gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  196 bits (499), Expect = 6e-56
 Identities = 94/172 (54%), Positives = 113/172 (65%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL  P+TPS H+P+ A  FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 519  FLFLPMTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVL 578

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R + F A +L  IL  PCFV+  TF  ++P+    +T  L        + TPP RW N
Sbjct: 579  PLRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVN 638

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATE Y  RTCP WVLLQFP +  + L VRDVSLWVEP+I YRH +GGF
Sbjct: 639  THFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGF 690


>gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  196 bits (499), Expect = 6e-56
 Identities = 94/172 (54%), Positives = 113/172 (65%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL  P+TPS H+P+ A  FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 519  FLFLPMTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVL 578

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R + F A +L  IL  PCFV+  TF  ++P+    +T  L        + TPP RW N
Sbjct: 579  PLRPVCFGATVLDNILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVN 638

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATE Y  RTCP WVLLQFP +  + L VRDVSLWVEP+I YRH +GGF
Sbjct: 639  THFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGF 690


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
 gb|AAW63129.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
          Length = 989

 Score =  195 bits (496), Expect = 1e-54
 Identities = 89/172 (51%), Positives = 111/172 (64%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL FP TPS H+P+    FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 796  FLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVL 855

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R +   A +L  I+  PCF++  TF  ++P+   R+T  L        + TPP RW N
Sbjct: 856  PLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVN 915

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGF 521
            THFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP + +RH +GGF
Sbjct: 916  THFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGF 967


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score =  183 bits (464), Expect = 2e-50
 Identities = 85/161 (52%), Positives = 104/161 (64%)
 Frame = +3

Query: 6    FLHFPVTPSVHLPRTAAGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVL 185
            FL FP TPS H+P+ A  FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VL
Sbjct: 673  FLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVL 732

Query: 186  PHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTN 365
            P R +   A +L  I+  PCF++  TF  ++P+   R+T  L        + TPP RW N
Sbjct: 733  PLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIASYETPPRRWVN 792

Query: 366  THFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 488
            THFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP
Sbjct: 793  THFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEP 833