BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00018634
         (684 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178...   302   7e-94
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...   280   2e-85
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   283   2e-84
ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424...   279   4e-83
emb|CAN74951.1| hypothetical protein VITISV_030567, partial [Vit...   279   5e-83
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...   269   2e-80
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]   268   2e-80
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo...   249   4e-80
ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177...   268   1e-79
dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subt...   268   3e-79
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   265   2e-78
dbj|GAU21262.1| hypothetical protein TSUD_286720 [Trifolium subt...   258   3e-78
gb|KYP67572.1| Retrovirus-related Pol polyprotein from transposo...   248   4e-78
gb|KYP67563.1| Retrovirus-related Pol polyprotein from transposo...   248   4e-78
gb|KYP36077.1| Retrovirus-related Pol polyprotein from transposo...   248   5e-78
gb|PNX94503.1| putative retrotransposon Ty1-copia subclass prote...   264   6e-78
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   263   6e-78
gb|KYP63467.1| Retrovirus-related Pol polyprotein from transposo...   246   9e-77
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   254   2e-76
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo...   248   3e-76

>ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178344 [Citrus sinensis]
          Length = 877

 Score =  302 bits (774), Expect = 7e-94
 Identities = 131/214 (61%), Positives = 162/214 (75%)
 Frame = +1

Query: 40   FCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFTW 219
            FC+AC+ GK H   FPS+ T  T P +L+H DLWGPA   SS+G+ YY+  +DDYTR+TW
Sbjct: 491  FCDACQLGKCHMQHFPSIETSITQPLELLHADLWGPAPITSSQGYSYYLSILDDYTRYTW 550

Query: 220  IYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPY 399
            I+PL TK++  + F+ FK M+E      IKCLQ+DWGGE+RP  S L   GI FRHPCPY
Sbjct: 551  IFPLTTKSKTLSAFIDFKNMIENCLNLRIKCLQTDWGGEFRPFVSYLSEQGIQFRHPCPY 610

Query: 400  THQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQK 579
             H QNRK +RKH+HIVE GLTLLAQA LP KFWW+AF TAT+LINRLP+ +L   SP++K
Sbjct: 611  IHHQNRKIERKHRHIVETGLTLLAQAHLPLKFWWNAFHTATYLINRLPTPILNNKSPFEK 670

Query: 580  LFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
            LFHK+PDY  +K FGC+CYPYLRPYN  KLQ+R+
Sbjct: 671  LFHKLPDYTMMKVFGCSCYPYLRPYNHHKLQFRS 704


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
            [Trifolium pratense]
          Length = 835

 Score =  280 bits (715), Expect = 2e-85
 Identities = 129/216 (59%), Positives = 154/216 (71%)
 Frame = +1

Query: 37   SFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFT 216
            SFCEAC+YGK H   F +  +H     +LVHTD+WGPA   SS GFKYY+HFIDD+TRFT
Sbjct: 473  SFCEACQYGKMHFLPFKTSFSHAKEILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFT 532

Query: 217  WIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCP 396
            WIYPL  K+   + F+ FK MVE QF   IK +Q D GGEY+P++      GI FR  CP
Sbjct: 533  WIYPLKQKSDTAHAFIQFKNMVENQFSKKIKTIQCDGGGEYKPVQKHAIEAGIQFRMSCP 592

Query: 397  YTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQ 576
            YT QQN +A+RKH+HI E GLTLLAQAK+P  +WW AFSTA +LINRLPSSV    SPY 
Sbjct: 593  YTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWWEAFSTAVYLINRLPSSVTHNKSPYS 652

Query: 577  KLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
             L  + PDYN LK FGCACYP+L+PYN  KLQ+ T+
Sbjct: 653  LLHKREPDYNSLKPFGCACYPFLKPYNKHKLQFHTT 688


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  283 bits (723), Expect = 2e-84
 Identities = 127/216 (58%), Positives = 155/216 (71%)
 Frame = +1

Query: 37   SFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFT 216
            SFCEAC+YGK H   F S ++H   P +LVHTD+WGPA   +S GFKYY+HF+DD++RFT
Sbjct: 466  SFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFT 525

Query: 217  WIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCP 396
            WIYPL  K++    F+ FK + E QF   IK +Q D GGEY+P++ L    GI FR  CP
Sbjct: 526  WIYPLKQKSETVQAFIQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCP 585

Query: 397  YTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQ 576
            YT QQN +A+RKH+HI E GLTLLAQA++P  +WW AFSTA +LINRLPS V Q  SPY 
Sbjct: 586  YTSQQNGRAERKHRHITEFGLTLLAQAQMPLHYWWEAFSTAVYLINRLPSQVTQNESPYS 645

Query: 577  KLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
             +  K PDY  LKTFGCACYP L+PYN  KLQY T+
Sbjct: 646  LMLQKEPDYKLLKTFGCACYPCLKPYNQHKLQYHTT 681


>ref|XP_015889220.1| PREDICTED: uncharacterized protein LOC107424043 [Ziziphus jujuba]
          Length = 1270

 Score =  279 bits (713), Expect = 4e-83
 Identities = 121/216 (56%), Positives = 160/216 (74%)
 Frame = +1

Query: 34   VSFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRF 213
            ++FCEAC+ GK H   F   N+  + P +LVHTD+WGPA+  S EG++YYIHFIDDY+RF
Sbjct: 664  LAFCEACQLGKNHLCHFSLSNSKASAPLELVHTDVWGPAATVSKEGYRYYIHFIDDYSRF 723

Query: 214  TWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPC 393
            TWIYP+  K++   IF  F  MVE  F T +K +QSDWGGEYR     LQ +GI FRH C
Sbjct: 724  TWIYPMTVKSEALFIFKHFHVMVERLFDTKLKVVQSDWGGEYRCFLPYLQQVGIKFRHSC 783

Query: 394  PYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPY 573
            PY HQQN +A+RKH+HIVE+GL+ LAQA +P  +WW AF++A ++INRLP+++L F SP+
Sbjct: 784  PYMHQQNGRAERKHRHIVEVGLSFLAQAHMPLLYWWEAFTSAVYVINRLPTAILDFHSPF 843

Query: 574  QKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
            + LF K+PDY+FLK FG AC+P+LRP+   K Q+ T
Sbjct: 844  ELLFKKVPDYDFLKVFGSACFPFLRPFQNHKFQFHT 879


>emb|CAN74951.1| hypothetical protein VITISV_030567, partial [Vitis vinifera]
          Length = 2203

 Score =  279 bits (714), Expect = 5e-83
 Identities = 124/217 (57%), Positives = 161/217 (74%)
 Frame = +1

Query: 34   VSFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRF 213
            ++FC AC  GK      P+    T  PF+LV +D+W PA   S +G+KYYI F+D +T +
Sbjct: 475  LNFCTACPLGKAKQFPLPTTINKTQVPFELVFSDVWEPAHTTSCDGYKYYIAFVDAFTNY 534

Query: 214  TWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPC 393
            TWIYP   K+Q  +I L F A+V+ +F T +KCLQ+DWGGE+ PL+SLLQ  GI+FRHPC
Sbjct: 535  TWIYPRQQKSQATSIVLQFIALVDRKFPTKLKCLQTDWGGEFHPLQSLLQKKGILFRHPC 594

Query: 394  PYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPY 573
            P+ HQQN K +RKH+ IVEIGLTLLA+++LP  FWWHAFSTAT+L+NRLP+ VL   +PY
Sbjct: 595  PHVHQQNGKVERKHRSIVEIGLTLLAKSQLPFTFWWHAFSTATYLLNRLPTPVLHCKTPY 654

Query: 574  QKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
            + LF   PD+ FLKTFGCACYPYLRPY   KL+Y+++
Sbjct: 655  ELLFKSSPDFLFLKTFGCACYPYLRPYKNHKLEYQST 691



 Score =  125 bits (315), Expect = 2e-29
 Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 3/208 (1%)
 Frame = +1

Query: 22   NLTHVSFCEACKYGKQHSNSFPSVN-THTTHPFQLVHTDLWGPASHCSSEGFKYYIHFID 198
            N      CEAC+ GKQ  NSF + N   T+ P +L+H DL+GP+   S  G  Y    +D
Sbjct: 1063 NFQKDKICEACQMGKQIKNSFKNKNFISTSRPLELLHMDLFGPSRTPSLGGKSYAYVIVD 1122

Query: 199  DYTRFTWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYR--PLKSLLQSLG 372
            D++R+TW+  L  K++    F  F   V+ +   SI C++SD G E+     +      G
Sbjct: 1123 DFSRYTWVLFLSQKSEAFYEFSKFCNKVQNEKGFSITCIRSDHGREFENFDFEEYCNKHG 1182

Query: 373  IIFRHPCPYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSV 552
            I      P T QQN   +RK++ + E+  T+L +  LP  FW  A +T+ +++NR+    
Sbjct: 1183 INHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYFWAEAVNTSCYVLNRILLRP 1242

Query: 553  LQFLSPYQKLFHKIPDYNFLKTFGCACY 636
            +   +PY+   +K P+ ++ K FGC C+
Sbjct: 1243 ILKKTPYELWKNKKPNISYFKVFGCKCF 1270


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score =  269 bits (687), Expect = 2e-80
 Identities = 119/215 (55%), Positives = 154/215 (71%)
 Frame = +1

Query: 40  FCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFTW 219
           FCEAC++GK H   F S  +H   P  L+HTD+WGPA   S+ GFKYY+HFIDD++RFTW
Sbjct: 198 FCEACQFGKLHLLPFKSSYSHAQEPLDLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTW 257

Query: 220 IYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPY 399
           IYPL  K++  + F  FK +VE QF   IK +Q D GGEY+ ++ L    GI FR  CPY
Sbjct: 258 IYPLKQKSETIHAFTQFKTLVENQFNKRIKIVQCDGGGEYKAVQKLALEAGIQFRMSCPY 317

Query: 400 THQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQK 579
           T QQN +A+RKH+H+ E+GLT+LAQA++P  +WW AFST+ +LINRLPSS+ Q   PY  
Sbjct: 318 TSQQNGRAERKHRHVAELGLTMLAQARMPLCYWWEAFSTSVYLINRLPSSINQNACPYTL 377

Query: 580 LFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
           ++ K PDY+ LK FGCACYP L+PYN  KLQ+ T+
Sbjct: 378 IYKKEPDYSVLKPFGCACYPCLKPYNKHKLQFHTT 412


>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
          Length = 1000

 Score =  268 bits (686), Expect = 2e-80
 Identities = 121/216 (56%), Positives = 155/216 (71%)
 Frame = +1

Query: 37   SFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFT 216
            SFCEAC++GK H   F S ++H   P  L+H+D+WGPA   S  GFKYY+HFIDD++RFT
Sbjct: 472  SFCEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDFSRFT 531

Query: 217  WIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCP 396
            WI+PL  K+   + F+ FK + E QF   IK +Q D GGEY+ ++ +    GI FR  CP
Sbjct: 532  WIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEYKAVQKVSIEAGIQFRMSCP 591

Query: 397  YTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQ 576
            YT QQN +A+RKH+H+VE+GLTLLAQAK+P ++WW AFSTA +LINRL SSV    SPY 
Sbjct: 592  YTSQQNGRAERKHRHVVELGLTLLAQAKMPLRYWWEAFSTAVYLINRLSSSVNPNESPYS 651

Query: 577  KLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
             +F + PDYN LK FGCACYP L+PYN  KLQ+ T+
Sbjct: 652  LMFKREPDYNALKPFGCACYPCLKPYNQHKLQFHTT 687


>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 264

 Score =  249 bits (637), Expect = 4e-80
 Identities = 117/205 (57%), Positives = 140/205 (68%)
 Frame = +1

Query: 31  HVSFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTR 210
           H +FCEAC+YGK H   F + ++H    F+LVHTD+WGPA   S  GFKYY+HF+DD++R
Sbjct: 60  HFNFCEACQYGKMHFLPFKTSSSHAKEIFELVHTDVWGPAPVTSPSGFKYYVHFLDDFSR 119

Query: 211 FTWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHP 390
           FTWIYPL  K+     F  FK M E  F   IK +Q D GGEY+ +++     GI FR  
Sbjct: 120 FTWIYPLKHKSDTAQAFTQFKNMAENLFNKRIKTIQCDGGGEYKTVQNHAIEAGIQFRMS 179

Query: 391 CPYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSP 570
           CPYT QQN +A+RKH+HI E  LTLLAQAK+P  +WW AFSTA +LINRLPS V Q  SP
Sbjct: 180 CPYTSQQNGRAERKHRHITEFSLTLLAQAKMPLHYWWEAFSTAVYLINRLPSLVTQNESP 239

Query: 571 YQKLFHKIPDYNFLKTFGCACYPYL 645
           Y  LF K PDYN LK FGCA YP L
Sbjct: 240 YSLLFRKEPDYNSLKPFGCAFYPCL 264


>ref|XP_015386863.1| PREDICTED: uncharacterized protein LOC107177515 [Citrus sinensis]
          Length = 1143

 Score =  268 bits (685), Expect = 1e-79
 Identities = 118/214 (55%), Positives = 149/214 (69%)
 Frame = +1

Query: 43   CEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFTWI 222
            C+ACK GK H   F    T T  P +++HTDLWGP+   S +G++YY+ F+DD TRFTWI
Sbjct: 572  CDACKMGKMHRLHFSVTETKTKFPLEILHTDLWGPSPVISPQGYRYYVSFVDDCTRFTWI 631

Query: 223  YPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPYT 402
            +PL TK +   +F  FK  +E QF   IKCLQSDWGGE+R   + L + GI FRH CPYT
Sbjct: 632  FPLKTKDETLPVFKIFKTQIEKQFSRPIKCLQSDWGGEFRSFVNYLLAEGIQFRHLCPYT 691

Query: 403  HQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQKL 582
            H QN   +RKH+HI E+GLTLLAQA +P KFWW +F TAT++INRLP+ VL   SPY+ L
Sbjct: 692  HNQNGLVERKHRHITELGLTLLAQAAMPLKFWWDSFHTATYIINRLPTPVLSIKSPYESL 751

Query: 583  FHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
            F   PDY FL+ FGC+C+ +LR YN  K Q+ TS
Sbjct: 752  FQLSPDYKFLRVFGCSCFLFLREYNKHKFQFHTS 785


>dbj|GAU51268.1| hypothetical protein TSUD_412550 [Trifolium subterraneum]
          Length = 1387

 Score =  268 bits (686), Expect = 3e-79
 Identities = 120/216 (55%), Positives = 154/216 (71%)
 Frame = +1

Query: 37   SFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFT 216
            SFCEAC++GK H   F   ++H   P  L+H+D+WGPA   S  GFKYY+HFIDD++RFT
Sbjct: 466  SFCEACQFGKLHLLPFKPSSSHVQEPLALIHSDVWGPAPILSPSGFKYYVHFIDDFSRFT 525

Query: 217  WIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCP 396
            WI+PL  K+   + F+ FK + E QF   IK +Q D GGEY+ ++ +    GI FR  CP
Sbjct: 526  WIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEYKAVQKVSIEAGIQFRMSCP 585

Query: 397  YTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQ 576
            YT QQN +A+RKH+H+ E+GLTLLAQAK+P ++WW AFSTA +LINRLPSSV    SPY 
Sbjct: 586  YTSQQNGRAERKHRHVAELGLTLLAQAKMPLRYWWEAFSTAVYLINRLPSSVNPNESPYS 645

Query: 577  KLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
             +F + PDYN LK FGCACYP L+PYN  KLQ+ T+
Sbjct: 646  LMFKREPDYNALKPFGCACYPCLKPYNQHKLQFHTT 681


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  265 bits (677), Expect = 2e-78
 Identities = 121/215 (56%), Positives = 153/215 (71%)
 Frame = +1

Query: 40   FCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFTW 219
            FCEAC++GK H+  F +  +    P  LVH+D+WGPA   S  GFKYY+ F+DD++RFTW
Sbjct: 398  FCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTW 457

Query: 220  IYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPY 399
            IYPL  K+ V   F+ F+ +VE QF   IK LQ D GGE++ L  +L   GI  R  CPY
Sbjct: 458  IYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPY 517

Query: 400  THQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQK 579
            T  QN +A+RKH+H+VE GLTLLAQAK+P  +WW AFSTA FLINRLP+ V++  SPYQ+
Sbjct: 518  TSAQNGRAERKHRHVVESGLTLLAQAKMPLHYWWEAFSTAVFLINRLPTQVIKNKSPYQQ 577

Query: 580  LFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
            LF K PDY  +KTFGCACYP L+PYN  KLQ+ T+
Sbjct: 578  LFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFHTT 612


>dbj|GAU21262.1| hypothetical protein TSUD_286720 [Trifolium subterraneum]
          Length = 743

 Score =  258 bits (660), Expect = 3e-78
 Identities = 116/212 (54%), Positives = 150/212 (70%)
 Frame = +1

Query: 49  ACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFTWIYP 228
           AC++GK H   F S ++H   P  L+H+D+WGPA   SS   KYY+HFIDD++RFTWI+P
Sbjct: 299 ACQFGKLHLLPFNSSSSHAKEPLDLIHSDVWGPAPILSSSNIKYYVHFIDDFSRFTWIFP 358

Query: 229 LHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPYTHQ 408
           L  K++  + F  FK MVE QF   I+ +Q D GGEY+P++ +    GI FR  CPYT Q
Sbjct: 359 LKQKSETIHAFTQFKNMVENQFNKKIRVIQCDGGGEYKPVQKVAIESGIQFRMSCPYTSQ 418

Query: 409 QNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQKLFH 588
           QN +A+RKH+H+ E+G+TLLAQAK+P  +WW AFST+ +LINRLPSSV    SPY  LF 
Sbjct: 419 QNGRAERKHRHVTELGITLLAQAKMPLHYWWEAFSTSVYLINRLPSSVNPNESPYSLLFE 478

Query: 589 KIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
           K PDY+ LK FGCACYP L+PYN  KLQ+  +
Sbjct: 479 KEPDYDVLKPFGCACYPCLKPYNQHKLQFHNT 510


>gb|KYP67572.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 349

 Score =  248 bits (632), Expect = 4e-78
 Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 1/202 (0%)
 Frame = +1

Query: 79  SFPSVNTHTTHPFQLV-HTDLWGPASHCSSEGFKYYIHFIDDYTRFTWIYPLHTKAQVHN 255
           S PS + +T  PF+L+  +DLWGPAS  S+ GF+YYI F+D YTRFTWIY L  KAQ   
Sbjct: 135 SGPSSSVYTA-PFELIIFSDLWGPASVTSTCGFQYYITFVDAYTRFTWIYLLKNKAQTIG 193

Query: 256 IFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPYTHQQNRKAQRKH 435
           IF  F  MV+ QFQ  IK LQ+DWGG+YRP  + L  +GI  R  CP+TH QN   +RKH
Sbjct: 194 IFKQFHNMVKNQFQLPIKALQTDWGGKYRPFTAYLNDVGIQHRLICPHTHHQNGVVERKH 253

Query: 436 QHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQKLFHKIPDYNFLK 615
           +HIVE+GLT+LA+A LP +FW +AF T+ +LINRLPSS +Q   PYQKLF+KIPDY+FLK
Sbjct: 254 RHIVELGLTMLAEANLPMQFWDYAFPTSVYLINRLPSSSIQNEVPYQKLFNKIPDYHFLK 313

Query: 616 TFGCACYPYLRPYNTSKLQYRT 681
            FGC+C+P+LRPYN +KLQ R+
Sbjct: 314 VFGCSCFPHLRPYNRNKLQLRS 335


>gb|KYP67563.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 349

 Score =  248 bits (632), Expect = 4e-78
 Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 1/202 (0%)
 Frame = +1

Query: 79  SFPSVNTHTTHPFQLV-HTDLWGPASHCSSEGFKYYIHFIDDYTRFTWIYPLHTKAQVHN 255
           S PS + +T  PF+L+  +DLWGPAS  S+ GF+YYI F+D YTRFTWIY L  KAQ   
Sbjct: 135 SGPSSSVYTA-PFELIIFSDLWGPASVTSTCGFQYYITFVDAYTRFTWIYLLKNKAQTIG 193

Query: 256 IFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCPYTHQQNRKAQRKH 435
           IF  F  MV+ QFQ  IK LQ+DWGG+YRP  + L  +GI  R  CP+TH QN   +RKH
Sbjct: 194 IFQQFHNMVKNQFQLPIKALQTDWGGKYRPFTAYLNDVGIQHRLICPHTHHQNGVVERKH 253

Query: 436 QHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQKLFHKIPDYNFLK 615
           +HIVE+GLT+LA+A LP +FW +AF T+ +LINRLPSS +Q   PYQKLF+KIPDY+FLK
Sbjct: 254 RHIVELGLTMLAEANLPMQFWDYAFPTSVYLINRLPSSSIQNEVPYQKLFNKIPDYHFLK 313

Query: 616 TFGCACYPYLRPYNTSKLQYRT 681
            FGC+C+P+LRPYN +KLQ R+
Sbjct: 314 VFGCSCFPHLRPYNRNKLQLRS 335


>gb|KYP36077.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 383

 Score =  248 bits (634), Expect = 5e-78
 Identities = 118/219 (53%), Positives = 155/219 (70%), Gaps = 1/219 (0%)
 Frame = +1

Query: 28  THVSFCEACKYGKQHSNSF-PSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDY 204
           T  +FC++C  GK H   + PS + +   PF+L+  +LWGPAS   + GF+YYI F+D +
Sbjct: 115 TTPAFCDSCCLGKSHRLHYGPSTSVYIA-PFELIFNNLWGPASVTFTCGFQYYITFVDAH 173

Query: 205 TRFTWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFR 384
           TRFTWIY L  KAQ   +F  F  MV+ QFQ  IK LQ+DWGGEYRP K+ L  + I   
Sbjct: 174 TRFTWIYLLKNKAQTIGVFKQFHNMVKNQFQLPIKALQTDWGGEYRPFKAYLNDVRIQHH 233

Query: 385 HPCPYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFL 564
             CP+TH Q+   +RKH+HI+E+GLT+LAQA LP + W + F T+ +LINRLPSS +Q  
Sbjct: 234 LICPHTHHQDGVVERKHRHIIELGLTMLAQANLPMQLWDYTFLTSVYLINRLPSSSIQKE 293

Query: 565 SPYQKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
            PY KLF+KIPDY+FLK FGCAC+P+LRPYN +KLQ+R+
Sbjct: 294 VPYHKLFNKIPDYHFLKFFGCACFPHLRPYNKNKLQFRS 332


>gb|PNX94503.1| putative retrotransposon Ty1-copia subclass protein, partial
            [Trifolium pratense]
          Length = 1242

 Score =  264 bits (675), Expect = 6e-78
 Identities = 118/216 (54%), Positives = 153/216 (70%)
 Frame = +1

Query: 37   SFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRFT 216
            +FCEAC++GK H   F + ++H   P  L+HTD+WGPA   S   FKYY+HF+DD++RFT
Sbjct: 473  TFCEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFT 532

Query: 217  WIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPCP 396
            WI+PL  K++  + F  FK +VE QF   IK ++ D GGEY+P++      GI F+  CP
Sbjct: 533  WIFPLKQKSETIHAFNQFKNLVENQFNKKIKVIRCDGGGEYKPVQKCAIDSGIQFQMSCP 592

Query: 397  YTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPYQ 576
            YT QQN +A+RKH+H+ E+GLTLLAQAK+P  +WW AFSTA +LINRLPSSV    SPY 
Sbjct: 593  YTSQQNGRAERKHRHVTELGLTLLAQAKMPLSYWWEAFSTAVYLINRLPSSVNPNESPYT 652

Query: 577  KLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRTS 684
             +F K PDY  LK FGCACYP L+PYN  KLQ+ T+
Sbjct: 653  LVFKKEPDYTALKPFGCACYPCLKPYNQHKLQFHTT 688


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  263 bits (671), Expect = 6e-78
 Identities = 125/216 (57%), Positives = 155/216 (71%), Gaps = 1/216 (0%)
 Frame = +1

Query: 37   SFCEACKYGKQHS-NSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDDYTRF 213
            +FC AC  GK H  +S PS +T  THP +LV +DLWGP+   S+ G+ YYI F+D Y+RF
Sbjct: 589  TFCTACCMGKAHKLHSLPS-HTQYTHPLELVFSDLWGPSPQPSTLGYNYYITFVDAYSRF 647

Query: 214  TWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIFRHPC 393
            TWIY L +K+    IF  FKAMVE QF  S+K LQ+DWGGE+RP    L+ LG+I R  C
Sbjct: 648  TWIYLLKSKSDAFIIFKQFKAMVELQFGHSLKALQTDWGGEFRPFTKFLKDLGVIHRLIC 707

Query: 394  PYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQFLSPY 573
            P+TH QN   +RKH+HIV++GLTLL+QA LP  +W +AF TA +LINRLPS+ L F  PY
Sbjct: 708  PHTHHQNGVVERKHRHIVDLGLTLLSQASLPLSYWDYAFLTAVYLINRLPSAPLDFKIPY 767

Query: 574  QKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
              LFH+ PDY FLK FGCAC+P LRPYNT KL YR+
Sbjct: 768  TLLFHQDPDYKFLKVFGCACFPLLRPYNTHKLDYRS 803


>gb|KYP63467.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 411

 Score =  246 bits (628), Expect = 9e-77
 Identities = 114/220 (51%), Positives = 150/220 (68%)
 Frame = +1

Query: 22  NLTHVSFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDD 201
           N T   FC  C  GK H        T    PF+L ++DLWGPA   S  G++YY+ F+D 
Sbjct: 159 NKTVCDFCTPCCLGKSHKLLSTLSKTVYNTPFELTYSDLWGPAPFISDNGYQYYVTFVDA 218

Query: 202 YTRFTWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIF 381
           +TRFTWI+ L +KA   ++F  F AM++ QFQ  IK +Q+DWGGE+R   S L   GI  
Sbjct: 219 HTRFTWIFLLKSKAHTLDVFKQFHAMIQNQFQLPIKVIQTDWGGEFRSFTSYLAQTGIQH 278

Query: 382 RHPCPYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQF 561
              CP+TH QN   +RKH+ IVE+GLT+LAQA+LP  FW HAF T+ +LINRLPSS +Q 
Sbjct: 279 CLICPHTHHQNGVVERKHRRIVELGLTMLAQAQLPMHFWDHAFLTSVYLINRLPSSSIQN 338

Query: 562 LSPYQKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
             P++KLFH++PDYNFL+ FGC+C+P+LRPYN +KLQ R+
Sbjct: 339 DVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQLRS 378


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 785

 Score =  254 bits (650), Expect = 2e-76
 Identities = 117/220 (53%), Positives = 154/220 (70%)
 Frame = +1

Query: 22   NLTHVSFCEACKYGKQHSNSFPSVNTHTTHPFQLVHTDLWGPASHCSSEGFKYYIHFIDD 201
            N T   FC  C  GK H     S  T    PF+L+++DLWGPA   S  G++YY+ F+D 
Sbjct: 430  NKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFELIYSDLWGPAPITSDNGYQYYVTFVDA 489

Query: 202  YTRFTWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGIIF 381
            +TRFTWI+ L  KA   ++F  F AM++ QFQ  IK +Q+DWGGE+R   S L   GI  
Sbjct: 490  HTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLPIKAIQTDWGGEFRSFTSYLAQNGIQH 549

Query: 382  RHPCPYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVLQF 561
            R  CP+TH QN   +RKH+HIVE+GLT+LAQA LP +FW HAF T+ +LINRLPSS +Q 
Sbjct: 550  RLICPHTHHQNGVVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSIQN 609

Query: 562  LSPYQKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
              P++KLFH++PDYNFL+ FGC+C+P+LRPYN +KLQ+R+
Sbjct: 610  DVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFRS 649


>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 537

 Score =  248 bits (634), Expect = 3e-76
 Identities = 115/222 (51%), Positives = 155/222 (69%), Gaps = 2/222 (0%)
 Frame = +1

Query: 22  NLTHVSFCEACKYGKQHSNSFPSVNTHTTH--PFQLVHTDLWGPASHCSSEGFKYYIHFI 195
           N T   FC  C+ GK H    PS  + T +  PF+L+++DLW PA   S  G++YY+ F+
Sbjct: 66  NKTVSDFCTPCRLGKSHK--LPSTLSKTVYHTPFELIYSDLWRPAPITSDNGYQYYVTFV 123

Query: 196 DDYTRFTWIYPLHTKAQVHNIFLTFKAMVETQFQTSIKCLQSDWGGEYRPLKSLLQSLGI 375
           D +TRF WI+   +KA   ++F  F AM++ QFQ  IK +Q+DWGGE+R   S L   GI
Sbjct: 124 DAHTRFIWIFLFKSKAHTLDVFKQFHAMIQNQFQLPIKAIQTDWGGEFRSFTSYLAQNGI 183

Query: 376 IFRHPCPYTHQQNRKAQRKHQHIVEIGLTLLAQAKLPSKFWWHAFSTATFLINRLPSSVL 555
             R  CP+TH QN   +RKH+HIVE+GLT+LAQA LP +FW HAF T+ +LINRLPSS +
Sbjct: 184 QHRLICPHTHHQNGIVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSI 243

Query: 556 QFLSPYQKLFHKIPDYNFLKTFGCACYPYLRPYNTSKLQYRT 681
           Q   P++KLFH++PDYNFL+ FGC+C+P+LRPYN +KLQ R+
Sbjct: 244 QHDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQLRS 285