BLASTX nr result

ID: Rehmannia31_contig00016703 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00016703
         (2754 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP17738.1| unnamed protein product [Coffea canephora]           1120   0.0  
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...  1063   0.0  
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   824   0.0  
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   659   0.0  
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   649   0.0  
emb|CDP17739.1| unnamed protein product [Coffea canephora]            600   0.0  
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   649   0.0  
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   590   0.0  
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro...   596   0.0  
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          580   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     585   0.0  
gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]    582   0.0  
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     581   0.0  
gb|PNX96445.1| copia LTR rider [Trifolium pratense]                   582   0.0  
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   581   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   594   0.0  
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...   557   0.0  
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   571   0.0  
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            578   0.0  
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        566   0.0  

>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score = 1120 bits (2897), Expect = 0.0
 Identities = 551/775 (71%), Positives = 637/775 (82%), Gaps = 6/775 (0%)
 Frame = -3

Query: 2464 RMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLA 2285
            R+ + +++++VETFDGTGHFGMWQGEV+D LFQQGLDIAI              TINRLA
Sbjct: 27   RIPMSSLKVAVETFDGTGHFGMWQGEVMDSLFQQGLDIAIEEKKSDDIEEKEWSTINRLA 86

Query: 2284 CGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMN 2105
            CGTIRSCLS+EQKYAFKNE SA+KLWKALE KFLKKSGQNKLLMKK LFRF+Y+ GTTMN
Sbjct: 87   CGTIRSCLSKEQKYAFKNETSAWKLWKALEGKFLKKSGQNKLLMKKILFRFDYQPGTTMN 146

Query: 2104 DHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAAL 1925
            +HIT FNQLVADLLNLDV F DEDLALMLLSSLPDEFEHLETTLLHGK++VSL  VC+AL
Sbjct: 147  EHITIFNQLVADLLNLDVNFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSLDAVCSAL 206

Query: 1924 YSYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHW 1745
            YS EL          +AA DEALVA                  +++ KDECAFC EKGHW
Sbjct: 207  YSRELRKQDKKKKK-VAAADEALVARGRQQSQSKGRRGWSKSISRVAKDECAFCREKGHW 265

Query: 1744 KKDCPKLKNKGKAPQDACVAE--GESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEW 1571
            KKDCPKLK KGKAPQD  VAE   ++E +FSL VS L S  DEWILDS CTYHM+P++EW
Sbjct: 266  KKDCPKLKKKGKAPQDVNVAECKSDAESDFSLAVSRLTSHPDEWILDSTCTYHMTPMREW 325

Query: 1570 FFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALE 1391
            FF FEE++GG VYMGNDN CKT GIGSI+L+NHDGSTR+L DVRYVPNLK++LISLG LE
Sbjct: 326  FFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLE 385

Query: 1390 SKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVA-DSRNEKESEAAKL 1214
            SKGL V +RDG+LK TSG+L+++KG+R+NNLYYYQG+TV+GTAAVA  S ++K++EA KL
Sbjct: 386  SKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKL 445

Query: 1213 WHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYV 1034
            WHMRLG AGEKSLQ LAKQGLLK  KVCKL+FCEHCVL KQ++VKFGT IHNT+GILDYV
Sbjct: 446  WHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYV 505

Query: 1033 HSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKI 854
            HSDVWGP+KTPSLGG++YFVTFIDDFSRRVWV+TMK+KDE+L IFLKWK R+ENQTGRKI
Sbjct: 506  HSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKI 565

Query: 853  KVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAG 674
            K+LRTDNGGEY SDPFQ++C + GIVRHF VR+ PQQNGV+E MN+TLVEKVRCMLSNAG
Sbjct: 566  KILRTDNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEKVRCMLSNAG 625

Query: 673  LGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESK 494
            LGR+ WAEAVTYAQHL+NRLPSSAIGGKTPLEVWSGK  TDYDSLR+F S  YYHV ESK
Sbjct: 626  LGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTAYYHVNESK 685

Query: 493  LEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVE 314
            L+PRAK+ALFMG ++GVKGYRLW LE+KK + SRDVTFDE  ML  +T + T    QQVE
Sbjct: 686  LDPRAKKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLNKITQDGTSGTPQQVE 745

Query: 313  RTPKQVEVEEMAIIPAK---NDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPR 158
             TPKQVE E++ + PA    +D+P+ E+  + DEEEV TQ+P  Q + IAV R R
Sbjct: 746  CTPKQVEFEQIVVSPANSTISDSPMAEE--ESDEEEVSTQEPQQQQKSIAVNRAR 798


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score = 1063 bits (2750), Expect = 0.0
 Identities = 537/806 (66%), Positives = 611/806 (75%), Gaps = 6/806 (0%)
 Frame = -3

Query: 2401 MWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSCLSREQKYAFKNENS 2222
            MWQGEVLD LFQQGLD AI               INRLACGTIRSCLSREQKYA KNE S
Sbjct: 1    MWQGEVLDSLFQQGLDFAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYAVKNETS 60

Query: 2221 AYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFS 2042
            A+KLWKALEDKFLKKS                                        V F 
Sbjct: 61   AHKLWKALEDKFLKKS----------------------------------------VKFE 80

Query: 2041 DEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXNIAADDE 1862
            DEDLALMLLSSLPDEFEHLETTLLHGK++VSL  VC+ALYS+EL         +  +++ 
Sbjct: 81   DEDLALMLLSSLPDEFEHLETTLLHGKENVSLDAVCSALYSHELRKQDKMRTKSTTSEEA 140

Query: 1861 ALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHWKKDCPKLKNKGKAPQDACVAE 1682
             ++                     + KDECAFCHEKGHWKKDCPKL+ K K PQDA VAE
Sbjct: 141  LVIRGRQQSQTKERRGMSKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAE 200

Query: 1681 GES--EDEFSLVVS-PLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNAC 1511
             +S  E + SL+VS    S  DEWILDSGCTYHM P+++WFF F+E++GGVVYMGNDN C
Sbjct: 201  CKSDVESDISLIVSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPC 260

Query: 1510 KTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSL 1331
            KT GIGSI+L+NHDGSTR+L DVRYVP LKKNLISLGALESKGL+VT+RDG+LKAT G+L
Sbjct: 261  KTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGAL 320

Query: 1330 VVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGL 1151
            V++KG+ +NNLYYYQG+TV+GT A A S ++K++EAAKLWHMRLGHAGEKSLQ L KQGL
Sbjct: 321  VMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGL 380

Query: 1150 LKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVT 971
            LK  K CKL+FCEHCVLGKQ+RVKFGTAIHNT+GILDYVHSDVWGP+KTPS+GG+HYFVT
Sbjct: 381  LKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVT 440

Query: 970  FIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCH 791
            F+DDFSRRVWV+TMK K++VL IFLKWK  +EN TGRKIKVL+TDNGGEY SDPF  VC 
Sbjct: 441  FVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLNVCQ 500

Query: 790  KYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLP 611
              GIVRHFTVR+TPQQNGV+ERMN+TLVEKV CMLSNA LGR+ WAEAVTYAQHL+NRLP
Sbjct: 501  DCGIVRHFTVRKTPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNRLP 560

Query: 610  SSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYR 431
            SSAI GKTPLEVWSGKP TDYDSL VFGS+ YYHV ESKL+PRAK+ALFMG + GVKGYR
Sbjct: 561  SSAIDGKTPLEVWSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYR 620

Query: 430  LWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKN--- 260
            LWCLE KK + SRDVTFDE  MLK V  E TDS  QQVE   KQVE E   +IP +N   
Sbjct: 621  LWCLEKKKTIISRDVTFDESVMLKKVNPEGTDSTPQQVECVRKQVEFEPTVVIPTRNTTS 680

Query: 259  DNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRREIHKPARFADMVAYALPVIDDDVPF 80
            D+P+ E+  + DEEEV TQ+   QS PIAVRR RR+I KPARF DMVAYALPV+ DD+P 
Sbjct: 681  DSPMAEE--ESDEEEVPTQESQQQSAPIAVRRQRRDIQKPARFMDMVAYALPVV-DDIPS 737

Query: 79   TFREAVRSPESEKWKGAMEEEMQSLQ 2
            T+   + S ES  W GAMEEEMQSL+
Sbjct: 738  TYPGVILSSESGNWAGAMEEEMQSLK 763


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  824 bits (2128), Expect = 0.0
 Identities = 405/601 (67%), Positives = 469/601 (78%), Gaps = 3/601 (0%)
 Frame = -3

Query: 1795 AKLDKDECAFCHEKGHWKKDCPKLKNKG--KAPQDACVAEGESEDEFSLVVSPLISRSDE 1622
            AK+ KDECAFC EKGHWKKDCPKLKNKG  K   D+ VAE   + + SL VS   S S  
Sbjct: 13   AKVGKDECAFCREKGHWKKDCPKLKNKGQSKTVADSNVAEYVDDSDCSLAVSGSTSSSSA 72

Query: 1621 WILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDV 1442
            W+LDSGC+ HM P +EWF++F E+  GVVY  ND    T GIGSIRLKN DG+ R L DV
Sbjct: 73   WLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHGIGSIRLKNRDGAIRTLKDV 132

Query: 1441 RYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKGIRRNN-LYYYQGNTVIGT 1265
            R+VP+L +NLIS+GALE KG  V    GV+K  SG+LVV+KG+R+NN LYYYQG T+IGT
Sbjct: 133  RFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGVRKNNRLYYYQGTTIIGT 192

Query: 1264 AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKR 1085
            AAVA S +EKE E+AKLWHMRLGHAGE+SL  L KQGLLK+++ CKLDFCEHCV GK+ R
Sbjct: 193  AAVASS-DEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTR 251

Query: 1084 VKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLG 905
            VKFGTAIH+T+GILDYVHSDVWGPSKT SL G HY+VTF+DDFSRR+WVY MKTKDEVLG
Sbjct: 252  VKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLG 311

Query: 904  IFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAER 725
            IFLKWK R+E QTGRKIK  RTDNGGEYTSDPF++ C + GIVRHFTV+ TPQQNGVAER
Sbjct: 312  IFLKWKKRMETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAER 371

Query: 724  MNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYD 545
            MNRTL+EKVRCMLSNAGLG+Q WAEAV YA HLINRLPSSAIGGKTPLE W GKP TDYD
Sbjct: 372  MNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYD 431

Query: 544  SLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAM 365
            SL VFG   YYHVKESKL+PRAK+A+FMGI SGVKGYRLWCLE+KK + SRDVTFDE  M
Sbjct: 432  SLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTM 491

Query: 364  LKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQS 185
            L  VT+E      Q+   TPKQVE E   + PA ++        + DEEEV  Q+P  Q 
Sbjct: 492  LGKVTTE------QKKNGTPKQVEFERKIVFPANDEEKTPMVDEESDEEEVHIQEPPQQL 545

Query: 184  EPIAVRRPRREIHKPARFADMVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSL 5
            E IA+R+P+R    PAR+ DMV+YA PV  DD+P T+ EAV+  E +KW+ AM EEM+SL
Sbjct: 546  ESIALRKPKRTTIMPARYVDMVSYASPVASDDIPTTYIEAVKGSEEDKWRSAMSEEMESL 605

Query: 4    Q 2
            +
Sbjct: 606  R 606


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  659 bits (1699), Expect = 0.0
 Identities = 367/825 (44%), Positives = 490/825 (59%), Gaps = 11/825 (1%)
 Frame = -3

Query: 2446 IRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRS 2267
            + + ++ F G   F +WQ ++   L QQG   A                +   A  TI  
Sbjct: 4    LNVKIDKFTGRNSFSLWQIKMRALLKQQGF-WAPLSKDKNAVVTPEMAILEEKAHSTIML 62

Query: 2266 CLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAF 2087
            CL+ +      +E +A  LW  LE  ++ KS  NKLL+K+RLF      GT + +H+   
Sbjct: 63   CLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQL 122

Query: 2086 NQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELX 1907
            N L+ +L N+DV   DED AL+LL SLP  FE+   + + GKD VSL  V +AL+S EL 
Sbjct: 123  NTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELR 182

Query: 1906 XXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHWKKDCPK 1727
                    +I        +                  AK D D C +C EKGHWK DCPK
Sbjct: 183  HKANGTSTDIQPSG-LFTSSRKGRKNGGKKNKPMSKGAKPD-DVCNYCKEKGHWKFDCPK 240

Query: 1726 LKNKG-KAPQDACVAEGE--SEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFE 1556
             K +  K    A VAE +  SE++ +LV       SD W+LDSG +YH+ P +EWF  +E
Sbjct: 241  KKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYE 300

Query: 1555 EINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKGLI 1376
            +++GG + M N + CK  G GSI+++ HDGS   L +VR+VP + KNLISL  L+SKG  
Sbjct: 301  QVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFS 360

Query: 1375 VTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAKLWHMRLG 1196
             + +DGVL+   GS +++KG+ R  LY+ QG+TV G+A VA S   ++ +  KLWH+RLG
Sbjct: 361  WSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK-DMTKLWHIRLG 419

Query: 1195 HAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWG 1016
            H GE+ +Q L+K+ LL   KV  L+FCEHCV GK  R KF  AIH T+G LDY+HSD WG
Sbjct: 420  HMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWG 479

Query: 1015 PSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTD 836
            P +  SLGG  +FV+ IDD+SR  WVY MK K E    F +WK  +ENQTG+KIK LRTD
Sbjct: 480  PCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTD 539

Query: 835  NGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHW 656
            NG E+    F + C   GI RH TVR TPQQNGVAERMN+TL+E+ RCMLSNAGL R+ W
Sbjct: 540  NGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFW 599

Query: 655  AEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRAK 476
            AEAV+ A +LINR P + I  KTP+E+WSGK   DY +L+ FG   YYHV E KLEPRAK
Sbjct: 600  AEAVSTACYLINRGPHTGIQCKTPMEMWSGK-AADYSNLKAFGCTAYYHVSEGKLEPRAK 658

Query: 475  RALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQV 296
            + +F+G   GVKG+R+W    K+++ SR+V FDE  +L+T+    T S    ++   KQV
Sbjct: 659  KGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLD---KQV 715

Query: 295  EVEEMAIIPAKND--NPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRR-EIHKPAR--F 131
            E +   +I  ++D   P  ED     E ++    P D  + IA  RPRR  +  P R  F
Sbjct: 716  EFQ---VIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGF 772

Query: 130  ADMVAYALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEMQSL 5
             DMV YAL V   +D   P T++EA+ S +SEKW  AM +EM+SL
Sbjct: 773  EDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESL 817


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  649 bits (1673), Expect = 0.0
 Identities = 369/832 (44%), Positives = 501/832 (60%), Gaps = 15/832 (1%)
 Frame = -3

Query: 2455 VPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL--AC 2282
            V + +  VE F G   F +W+ ++   L QQGL  A+             +  + L  A 
Sbjct: 525  VSSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSEEQKDDMLERAH 584

Query: 2281 GTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMND 2102
              I  CL  E      +E +A  LW  LE K++ KS  N+L +K+RL+  +   GT ++ 
Sbjct: 585  SAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPVSQ 644

Query: 2101 HITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALY 1922
            H+  FN ++ DL N+D    DED A+++L SLP  +E+   T+++G+DD++L  V  AL 
Sbjct: 645  HLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNALS 704

Query: 1921 SYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHWK 1742
            S EL             + E LVA                      + +C +C + GH K
Sbjct: 705  SSELRKKITGKVVE-NNEGEGLVARGRSKAKGGSSSKSHPRSQSKKRIQCYYCKKYGHMK 763

Query: 1741 KDCPKLKNKGKAPQD----ACVAEGESEDEFSLVVSPLISRSD-EWILDSGCTYHMSPVK 1577
             DCPK K K ++ +     A VA+ +S  +  +V++   S +   WILD+G T+H+S  K
Sbjct: 764  VDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFHISTSK 823

Query: 1576 EWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGA 1397
            + F  +E+ +G V+ MGND+AC+  GIG++R+K  DG  R LTDVR++P +KKNLISL  
Sbjct: 824  DAFSTYEKHSGSVL-MGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLST 882

Query: 1396 LESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAK 1217
            L+ KG   +   GVLK  SG+L VI+G     LY+  G++V G A V+ S ++ +S+  K
Sbjct: 883  LDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSS-DDLDSDTTK 941

Query: 1216 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 1037
            LWHMRLGH  E+ L  L+K+GLL      KL+FCEHCV GKQ RVKF T IH T+G +DY
Sbjct: 942  LWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGTVDY 1001

Query: 1036 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 857
             HSD+WGPS T S GG  Y +TFIDD+SR+VWVY +K+K EVL  F ++K  IENQTG+K
Sbjct: 1002 FHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKK 1061

Query: 856  IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 677
            IK  RTDNG E+ S  F E C   GIVRH TVRRTPQQNGVAERMNRTL+E+ RCM SNA
Sbjct: 1062 IKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNRTLLERARCMRSNA 1121

Query: 676  GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 497
            GLG + WAEAV  A +L+NR PS+AI  KTP EVWSG P  DY  LRVFG   Y HV E 
Sbjct: 1122 GLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSP-ADYSGLRVFGCPAYAHVNEG 1180

Query: 496  KLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRDVTFDEHAMLKTVTS--EKTDSA 329
            KL+PRAK+ +F+G   GVKGYRLWC +  S K + SRDVTFDE +ML++ T+  EK +S 
Sbjct: 1181 KLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKEESD 1240

Query: 328  LQQVERTPKQVEVEEMAIIPAKNDNPVTE--DLSDDDEEEVQTQKPLDQSEPIAVRRPRR 155
                    KQVE +  A IP +  +   +  ++ D DE+E   +KP      IA  R +R
Sbjct: 1241 RMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQEKPYS----IATGRTKR 1296

Query: 154  EIHKPARFADMVAYALPVIDD--DVPFTFREAVRSPESEKWKGAMEEEMQSL 5
            +I    R+A++V++AL V +     P ++ EAV   ES +W  AM EE++SL
Sbjct: 1297 QIKPNPRYANLVSFALSVAESIGIEPSSYNEAVTCDESAQWAIAMSEEIESL 1348


>emb|CDP17739.1| unnamed protein product [Coffea canephora]
          Length = 435

 Score =  600 bits (1547), Expect = 0.0
 Identities = 286/393 (72%), Positives = 338/393 (86%), Gaps = 4/393 (1%)
 Frame = -3

Query: 1369 LRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVA-DSRNEKESEAAKLWHMRLGH 1193
            +RDG+LK TSG+LV++KG+R+N LYYYQG+ V+GTAA    S ++K++EA KLWHMRLGH
Sbjct: 1    MRDGILKVTSGALVMLKGVRKNILYYYQGSIVVGTAAATTSSSSKKDAEATKLWHMRLGH 60

Query: 1192 AGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGP 1013
            AGEKSLQ LAKQGLLK  KVCKL+FCEHCVL KQ++VKFGT IHNT+GILDYVHS+VWGP
Sbjct: 61   AGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSNVWGP 120

Query: 1012 SKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDN 833
            +KTPSLGG++YFVTFIDDFSRRVWV+TMK+KDEVL IFLKWK R+ENQTGRKIK+LRTDN
Sbjct: 121  AKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRTDN 180

Query: 832  GGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWA 653
            GGEY SDPFQ++  + GIV+HFTVR+TPQQNGV+ERMN+TLVEKV CMLSNA LGR+ WA
Sbjct: 181  GGEYKSDPFQKIGQECGIVQHFTVRKTPQQNGVSERMNKTLVEKVHCMLSNARLGRKFWA 240

Query: 652  EAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRAKR 473
            E VTYAQHL+NRLPSSAIGGKTPLEVWSGKP TDYDSLR+F S  YYHV ESKL+PRAK+
Sbjct: 241  ETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYDSLRIFYSTAYYHVNESKLDPRAKK 300

Query: 472  ALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVE 293
            A+FMG+ +GVKGYRLWCLE+KK + SRDVTF+E AML  VT   T    QQVE TPKQVE
Sbjct: 301  AIFMGLNAGVKGYRLWCLEAKKTIISRDVTFNESAMLNKVTQNGTSGTPQQVECTPKQVE 360

Query: 292  VEEMAIIPAK---NDNPVTEDLSDDDEEEVQTQ 203
             E++ + PA    +D+P+ E+  + DEEE+ TQ
Sbjct: 361  FEQIVVSPANSTISDSPMAEE--ESDEEEISTQ 391


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  649 bits (1673), Expect = 0.0
 Identities = 369/832 (44%), Positives = 501/832 (60%), Gaps = 15/832 (1%)
 Frame = -3

Query: 2455 VPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL--AC 2282
            V + +  VE F G   F +W+ ++   L QQGL  A+             +  + L  A 
Sbjct: 504  VSSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSEEQKDDMLERAH 563

Query: 2281 GTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMND 2102
              I  CL  E      +E +A  LW  LE K++ KS  N+L +K+RL+  +   GT ++ 
Sbjct: 564  SAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPVSQ 623

Query: 2101 HITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALY 1922
            H+  FN ++ DL N+D    DED A+++L SLP  +E+   T+++G+DD++L  V  AL 
Sbjct: 624  HLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNALS 683

Query: 1921 SYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHWK 1742
            S EL             + E LVA                      + +C +C + GH K
Sbjct: 684  SSELRKKITGKVVE-NNEGEGLVARGRSKAKGGSSSKSHPRSQSKKRIQCYYCKKYGHMK 742

Query: 1741 KDCPKLKNKGKAPQD----ACVAEGESEDEFSLVVSPLISRSD-EWILDSGCTYHMSPVK 1577
             DCPK K K ++ +     A VA+ +S  +  +V++   S +   WILD+G T+H+S  K
Sbjct: 743  VDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFHISTSK 802

Query: 1576 EWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGA 1397
            + F  +E+ +G V+ MGND+AC+  GIG++R+K  DG  R LTDVR++P +KKNLISL  
Sbjct: 803  DAFSTYEKHSGSVL-MGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLST 861

Query: 1396 LESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAK 1217
            L+ KG   +   GVLK  SG+L VI+G     LY+  G++V G A V+ S ++ +S+  K
Sbjct: 862  LDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSS-DDLDSDTTK 920

Query: 1216 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 1037
            LWHMRLGH  E+ L  L+K+GLL      KL+FCEHCV GKQ RVKF T IH T+G +DY
Sbjct: 921  LWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGTVDY 980

Query: 1036 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 857
             HSD+WGPS T S GG  Y +TFIDD+SR+VWVY +K+K EVL  F ++K  IENQTG+K
Sbjct: 981  FHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKK 1040

Query: 856  IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 677
            IK  RTDNG E+ S  F E C   GIVRH TVRRTPQQNGVAERMNRTL+E+ RCM SNA
Sbjct: 1041 IKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNRTLLERARCMRSNA 1100

Query: 676  GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 497
            GLG + WAEAV  A +L+NR PS+AI  KTP EVWSG P  DY  LRVFG   Y HV E 
Sbjct: 1101 GLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSP-ADYSGLRVFGCPAYAHVNEG 1159

Query: 496  KLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRDVTFDEHAMLKTVTS--EKTDSA 329
            KL+PRAK+ +F+G   GVKGYRLWC +  S K + SRDVTFDE +ML++ T+  EK +S 
Sbjct: 1160 KLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKEESD 1219

Query: 328  LQQVERTPKQVEVEEMAIIPAKNDNPVTE--DLSDDDEEEVQTQKPLDQSEPIAVRRPRR 155
                    KQVE +  A IP +  +   +  ++ D DE+E   +KP      IA  R +R
Sbjct: 1220 RMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQEKPYS----IATGRTKR 1275

Query: 154  EIHKPARFADMVAYALPVIDD--DVPFTFREAVRSPESEKWKGAMEEEMQSL 5
            +I    R+A++V++AL V +     P ++ EAV   ES +W  AM EE++SL
Sbjct: 1276 QIKPNPRYANLVSFALSVAESIGIEPSSYNEAVTCDESAQWAIAMSEEIESL 1327


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  590 bits (1522), Expect = 0.0
 Identities = 306/474 (64%), Positives = 348/474 (73%), Gaps = 4/474 (0%)
 Frame = -3

Query: 2401 MWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRLACGTIRSCLSREQKYAFKNENS 2222
            MWQGEVLD LFQQGLDIAI               INRLACGTIRSCLSREQKYA KNE S
Sbjct: 1    MWQGEVLDSLFQQGLDIAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYAVKNETS 60

Query: 2221 AYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFS 2042
            A+KLWKALEDKFLKKS                                       DV F 
Sbjct: 61   AHKLWKALEDKFLKKS---------------------------------------DVKFE 81

Query: 2041 DEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXNIAADDE 1862
            DEDLALMLLSSLPDEFEHLETTLLHGK++VSL VVC+ALYS+EL         +  ++ E
Sbjct: 82   DEDLALMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTSE-E 140

Query: 1861 ALVAXXXXXXXXXXXXXXXXXKAK-LDKDECAFCHEKGHWKKDCPKLKNKGKAPQDACVA 1685
            ALVA                 K + + KDECAFCHEKGHWKKDCPKL+ K K  QDA VA
Sbjct: 141  ALVARGRQQSQTKERRGMSKSKGRAVAKDECAFCHEKGHWKKDCPKLQKKEKVLQDANVA 200

Query: 1684 EGES--EDEFSLVVSPLISRS-DEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNA 1514
            E +S  E + SL+VS   S   DEWILDSGCTYHM P+++WFF F+E++GGVVYMGNDN 
Sbjct: 201  ECKSDVESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNP 260

Query: 1513 CKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGS 1334
            CKT GIGSI+L+NHDGSTR+L DVRYVP LKKNLISLGALESKGL+VT+RDG+LKATSG+
Sbjct: 261  CKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGA 320

Query: 1333 LVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQG 1154
            LV++KG+ +NNLYYYQG+TV+GT A A S ++K++EA KLWHMRLGHAGEKSLQ   KQG
Sbjct: 321  LVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQG 380

Query: 1153 LLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLG 992
            LLK  K CKL+FCEHCVLGKQ+RVKFGTAIHNT+GILDYVHSDVWGP+KTPS+G
Sbjct: 381  LLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIG 434



 Score =  442 bits (1138), Expect = e-138
 Identities = 222/315 (70%), Positives = 254/315 (80%), Gaps = 3/315 (0%)
 Frame = -3

Query: 937  YTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVR 758
            +TMK K++VL IFLKWK  +ENQTGRKIKVLRTDNGGEY SDPF +VC   GI+RHFT+R
Sbjct: 506  FTMKNKNDVLEIFLKWKDEVENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIR 565

Query: 757  RTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLE 578
            +TPQQNGV+ERMN+ LVEKVRCMLSNA LGR+ WAEAVTYAQHL+NRLPSSAI GKTPLE
Sbjct: 566  KTPQQNGVSERMNKILVEKVRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLE 625

Query: 577  VWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILF 398
            VWSGKP TDYDSL VFGS+ YYHV ESKL+PRAK+ALFMG + GVKGYRLWCLE+KK + 
Sbjct: 626  VWSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTII 685

Query: 397  SRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKN---DNPVTEDLSDD 227
            SRDVTFDE AMLK V  E  DS  QQVE   KQVE E   +IP +N   D+ + E+  + 
Sbjct: 686  SRDVTFDESAMLKKVNPEGADSTPQQVECARKQVEFEPKVVIPTRNTTSDSAMAEE--ES 743

Query: 226  DEEEVQTQKPLDQSEPIAVRRPRREIHKPARFADMVAYALPVIDDDVPFTFREAVRSPES 47
            DEEEV TQ+   QS PIAVRR RR+I KP+RF DMVAYALPV+ DD+P T+ EA+ S ES
Sbjct: 744  DEEEVPTQESQQQSAPIAVRRQRRDIQKPSRFMDMVAYALPVV-DDIPSTYPEAIMSSES 802

Query: 46   EKWKGAMEEEMQSLQ 2
              W GAMEEEMQSL+
Sbjct: 803  GNWAGAMEEEMQSLK 817


>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
          Length = 1309

 Score =  596 bits (1536), Expect = 0.0
 Identities = 333/829 (40%), Positives = 474/829 (57%), Gaps = 15/829 (1%)
 Frame = -3

Query: 2443 RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKT-INRLACGTIRS 2267
            +  +E F G+  F +W+ ++   L   GL  A+                 +  A   I  
Sbjct: 5    KFDLEKFTGSNDFSLWRIKMKALLVHTGLGGALNPEPQDDTIDKKKIVETDSKAFSAILL 64

Query: 2266 CLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAF 2087
            CL  E       E SA  LW  LE  +LK+S  N+L +KK L+      G  +  H+  F
Sbjct: 65   CLGDEVLREVAEEVSALSLWNKLESLYLKRSLANRLYLKKSLYTIHLEEGKDLKKHMDEF 124

Query: 2086 NQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELX 1907
            N+++ DL N+D+  +DED A+++LSSLP  +EH   T+L+GK+ +++A V +AL S EL 
Sbjct: 125  NKIILDLKNVDIKITDEDCAILMLSSLPRSYEHFVDTMLYGKETLTMAEVKSALNSKELH 184

Query: 1906 XXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHWKKDCPK 1727
                    +                                K +C  CH++GH+KKDCP 
Sbjct: 185  KKNETKMESTGEGLNVRGRTYKRESRNEKGGKHRSQSRTRGKLKCFVCHKEGHFKKDCPD 244

Query: 1726 LKNKG----KAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNF 1559
             + +     K P DA V     E    LVVS   ++ D W++DSGC++HM P+K WF N 
Sbjct: 245  RRARNPERRKDPGDAAVVSDGYESAEVLVVSRT-NKQDCWVMDSGCSFHMCPIKSWFQNL 303

Query: 1558 EEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKGL 1379
             E   G V +GN+  CK  GIGS+ LK HDG  R +T+VRYVP+L++NL+S+G L+SKG 
Sbjct: 304  VEEESGHVLLGNNRECKVMGIGSVLLKMHDGCVRTITEVRYVPDLRRNLLSIGMLDSKGF 363

Query: 1378 IVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAKLWHMRL 1199
             V +  G +K   GSL V++G + N LY  + +TV G++  A     K    A+LWH+RL
Sbjct: 364  NVKIEGGTMKVIKGSLTVMRGSQDNGLYILEASTVTGSSNAAVGGANK----ARLWHLRL 419

Query: 1198 GHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVW 1019
            GH  EK L  L+KQ LL   KV  L FC+ CVLGK  RV+F  +   ++GILDYVHSD+W
Sbjct: 420  GHVSEKGLVELSKQNLLGRDKVDDLSFCDECVLGKCSRVRFKRSSTQSKGILDYVHSDLW 479

Query: 1018 GPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRT 839
            GPS+  S GG  Y+++ IDD+SR++WV T+K+KDE    F  WK  +E QTG+KIK LRT
Sbjct: 480  GPSRVASRGGARYYISVIDDYSRKLWVVTLKSKDEAFKAFKDWKMMVETQTGKKIKKLRT 539

Query: 838  DNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQH 659
            DNG EY S  F++ C + GIVRH+TV  TPQQNG+AERMNRT++E+VRCML+++GL R  
Sbjct: 540  DNGLEYCSTEFKDFCKQEGIVRHYTVPNTPQQNGLAERMNRTILERVRCMLADSGLPRMF 599

Query: 658  WAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRA 479
            WAEAV  A +LINR PS+A+  KTP EVW+G    D+ +LR FG   + H+++ KL+PRA
Sbjct: 600  WAEAVVTASYLINRCPSTALEFKTPQEVWTGHR-PDFSNLRAFGCTAFAHIRQDKLQPRA 658

Query: 478  KRALFMGITSGVKGYRLWCLES--KKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTP 305
            K+ + +G    VKGY+LWC+E+  ++ L SRDV F+E      + S+ T   L  V    
Sbjct: 659  KKCVLLGYPENVKGYKLWCIETGEERCLISRDVVFNEEEF--PLKSKGTSETLPGVHGAK 716

Query: 304  KQVEVEEMAIIPAKN---DNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRREIHKPAR 134
            ++VE+      P  N   DN  T+ +S  D E++      D    +   R +R +  P +
Sbjct: 717  QEVEIS-----PRNNELVDN--TKVVSGPDAEDINAHAVGDYQ--LIRDREKRIVKAPQK 767

Query: 133  --FADMVAYALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQ 2
              FAD+ A+A      +D+  P ++ EAV S +   W  AM++EM SL+
Sbjct: 768  FGFADLTAFAFTAAYELDEVEPLSYEEAVSSRDKVHWIEAMKQEMDSLR 816


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  580 bits (1494), Expect = 0.0
 Identities = 325/729 (44%), Positives = 434/729 (59%), Gaps = 23/729 (3%)
 Frame = -3

Query: 2119 GTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAV 1940
            G+ +  HI  F  ++ DL  L V   DED A++LL SLP  ++HL TTL +GKD ++L  
Sbjct: 44   GSDLQQHINVFQNILTDLTRLRVQMDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLTS 103

Query: 1939 VCAALYSYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKD----EC 1772
            + +AL S+              +  E L                   K    K+    EC
Sbjct: 104  ITSALLSHGQRRQNAEG----GSQGEGLYVQGCSDRGRNKGKAGSGKKRSKSKNRKTSEC 159

Query: 1771 AFCHEKGHWKKDCPKLKNKGKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYH 1592
              C + GHWK+DCP +K +G +     V   +S  E  ++       +D WILDSGC+YH
Sbjct: 160  YSCKQIGHWKRDCPNIK-QGSSTSANLVHTDDSCSEGDILCVSSSKCTDAWILDSGCSYH 218

Query: 1591 MSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNL 1412
            M+P +EWF  F   + G VY+G+D AC  TGIG I++   DG  R LT+VRY+P L+KNL
Sbjct: 219  MTPNREWFTTFRSGSFGFVYLGDDKACAITGIGQIKIAMDDGGVRTLTNVRYIPELRKNL 278

Query: 1411 ISLGALESKGLIVTL-RD-GVLKATSGSLVVIKGIRR-NNLYYYQGNTVIGTAAVADSRN 1241
            ISLG L+  G      RD  +LK + G+L V++  R   N+Y   GNTV+G  A  +S N
Sbjct: 279  ISLGTLQENGYSYRSDRDRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDVASVESDN 338

Query: 1240 EKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIH 1061
            +    A KLWH+RLGH  E+ +  L K+ LLK V  CK+D C++CVLGKQ RV+F    H
Sbjct: 339  D----ATKLWHLRLGHLSERGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKH 394

Query: 1060 NTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTR 881
             TEGILDYVHSDVWGP++  S+GG  YFVTF DDFSR++WVY MK K EV   F  WK  
Sbjct: 395  KTEGILDYVHSDVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAE 454

Query: 880  IENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEK 701
            +ENQTGRKIK LR+DNG EYT+  F++ C ++GI RHF+VR+TPQQNGVAERMN +L E+
Sbjct: 455  VENQTGRKIKYLRSDNGTEYTNSQFEKFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTER 514

Query: 700  VRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSL 521
             RC+   AGL +  WAE +  A +LINR P +++ GK   EVW+GKP+ D D+LR+FG  
Sbjct: 515  ARCLQLKAGLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPI-DLDNLRIFGCP 573

Query: 520  VYYHVK---ESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLK-TV 353
             + H+     SKL+P++K+ +F+G + GVKG++LW   SKK++ SRDV FDE  MLK + 
Sbjct: 574  TFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFMLKQSR 633

Query: 352  TSEKTDSALQQVERTPKQVEVEEMAIIPAKNDN----------PVTEDLSDDDEEEVQTQ 203
             +E T+SA     +   QVE+E     P KN +          P+  D +D       + 
Sbjct: 634  ETEVTESAGGSSGKEVIQVELEP---TPNKNTSAVHQQPPEPTPINHDTADSGGASEDSV 690

Query: 202  KPLDQSEPIAVRRPRREIHKPAR--FADMVAYALPVIDDDVPFTFREAVRSPESEKWKGA 29
               D    +A  R RR I+ P R  F D+ AYAL     D P TFREA+ S E +KW GA
Sbjct: 691  GVDDYQ--LARDRERRSINPPQRYGFEDLAAYALLTSSGD-PSTFREAIVSQEKDKWMGA 747

Query: 28   MEEEMQSLQ 2
            M EEM+SLQ
Sbjct: 748  MMEEMESLQ 756


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  585 bits (1509), Expect = 0.0
 Identities = 320/760 (42%), Positives = 454/760 (59%), Gaps = 32/760 (4%)
 Frame = -3

Query: 2185 LKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSL 2006
            + K   +K+ +K++LF  + +   ++ DH++AF ++VADL +++V + +EDL L+LL SL
Sbjct: 1    MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 2005 PDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXNIAADDEALVAXXXXXXXX 1826
            P  + +   T+L+ +D ++L  V  AL++ E          + +  +  +V         
Sbjct: 61   PSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNT 120

Query: 1825 XXXXXXXXXKAKLDKDE-------CAFCHEKGHWKKDCPKLKNKGKAPQD---------- 1697
                          + +       C +C   GH   +C KL++K K  +           
Sbjct: 121  NNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEE 180

Query: 1696 ---ACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMG 1526
               A V + +S+ E  +  +     SD+WILD+ CTYHM P ++WF  +E + GG V MG
Sbjct: 181  GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMG 240

Query: 1525 NDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKA 1346
            +D  C+  GIG++++K  DG  R L DVR++PNLK++LISL  L+ KG   +  DG+LK 
Sbjct: 241  DDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 300

Query: 1345 TSGSLVVIKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQ 1172
            T GSLVV+K  I+  NLY+ +G T++G  AAV+DS +   S+A  LWHMRLGH  E  L 
Sbjct: 301  TKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSN--SDATNLWHMRLGHMSEIGLA 358

Query: 1171 TLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLG 992
             L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGILDYVHSD+WGP++  S G
Sbjct: 359  ELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFG 418

Query: 991  GKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSD 812
            G  Y +T +DD+SR+VW Y +K K +   +F +WKT +E QT RK+K+LRTDNG E  S 
Sbjct: 419  GARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSK 478

Query: 811  PFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQ 632
             F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RCMLSNA L +Q WAEAV+ A 
Sbjct: 479  IFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTAC 538

Query: 631  HLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGIT 452
            +LINR PS AI  KTP+EVWSG P  +Y  LRVFG   Y HV   KLEPR  + +F+G  
Sbjct: 539  YLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYL 597

Query: 451  SGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVE-VEEMAI 275
            SGVKGY+LWC E+KK++ SR+V F E  ML    S  T+  ++  E+   QVE +     
Sbjct: 598  SGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPS--TNVPVESQEKVSVQVEHLISSGH 655

Query: 274  IPAKNDNPVTED--LSDDDEEEVQTQKPLDQSEPIAVRRPRREIHKPARF---ADMVAYA 110
             P K D  + +D  + +D +  +  Q P      IA  RP+R    P R+   A++VAYA
Sbjct: 656  APEKEDVAINQDAPVIEDSDSSIVQQSP---KRSIAKDRPKRNTKPPRRYIEEANIVAYA 712

Query: 109  LPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQSLQ 2
            L V ++      P T+ +A+ S +  +W  AM +EM+SL+
Sbjct: 713  LSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLE 752


>gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1308

 Score =  582 bits (1500), Expect = 0.0
 Identities = 343/835 (41%), Positives = 474/835 (56%), Gaps = 22/835 (2%)
 Frame = -3

Query: 2443 RISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL--ACGTIR 2270
            +  +E FDG   FG+W+ ++   L  QG+  A+             +  + L  A   I 
Sbjct: 5    KFELEKFDGKNDFGLWRVKMRALLVHQGIVDALAGEAKLPAGLTDKEKKDILEKAHSAII 64

Query: 2269 SCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITA 2090
              L          E SA  +W  LE  ++ KS  N+L +KKRL+ F+  SG ++ DH   
Sbjct: 65   LSLGDRVLREVSKETSAAGIWAKLESLYMTKSLANRLYLKKRLYTFQLASGKSLEDHTDE 124

Query: 2089 FNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYEL 1910
            FN+++ DL N+DV+  DED A++ L+SLP  FEH   TL++G+D +S+  V AAL S EL
Sbjct: 125  FNKVILDLENIDVSIDDEDKAIIFLASLPQTFEHFVDTLMYGRDSLSMEEVLAALNSKEL 184

Query: 1909 XXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDECAFCHEKGHWKKDCP 1730
                           E LV                  K+K  K +C  C+ + H+K+DCP
Sbjct: 185  KKRSDAKEEI----GEGLVVRGRPEQKSFKGKNTPRSKSKF-KRKCYICNSEKHFKRDCP 239

Query: 1729 KLKNKGKAPQDACVAEGESEDEFS--------LVVSPLISRSDEWILDSGCTYHMSPVKE 1574
                K K    +    G S D  +        LVVS   ++ D WILDSG +YHM+P +E
Sbjct: 240  DRFKKKKYDSGSKSQHGGSPDSSNDGYESADVLVVSKG-NQDDNWILDSGGSYHMTPHRE 298

Query: 1573 WFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGAL 1394
            +F + E  + G V +G+D  C+  G G++ +K  +G+   L +VR++P L +N+ISLG  
Sbjct: 299  YFQDIEMQDMGTVKLGDDRTCRVQGQGTVVIKLENGTELKLVNVRFIPELTRNIISLGIF 358

Query: 1393 ESKGLIVTLRDGVLKATSGSLVVIKGIRR-NNLYYYQGNTVIGTAAVADSRNEKESEAAK 1217
            E +G  V+L++G  K   GS+V+  G RR NN+Y   G    G     +    K S+A  
Sbjct: 359  EKEGCSVSLKNGKAKIIKGSMVIFTGTRRGNNIYMLDGKVSQGVNCSVE--RPKISDAV- 415

Query: 1216 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 1037
            LWH RLGH  ++ L  L KQ +L +    +  FCEHC+LGK  RV+F   IH+T+GILDY
Sbjct: 416  LWHRRLGHISDQGLNELKKQEVLGNFDGREAGFCEHCILGKSHRVRFTKGIHSTKGILDY 475

Query: 1036 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 857
            VH+D+WGP++T SLGG  YF++ +DDFSRRVWVY +K K E  G F  WK  +E QT RK
Sbjct: 476  VHADLWGPARTISLGGALYFLSIVDDFSRRVWVYVLKGKHEAFGKFKDWKILVETQTERK 535

Query: 856  IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 677
            +K LRTDNG E+ +D F + C KYGI RH TV  TPQQNG+ ERMNRTL+ KVRCML ++
Sbjct: 536  VKKLRTDNGLEFCNDHFDQFCRKYGIARHRTVPGTPQQNGLVERMNRTLLNKVRCMLLSS 595

Query: 676  GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 497
            G+ ++ WAEAVT A +L+NR PS+AIG KTP+E+WSGK   +YD+LRVFG+L Y HVK+ 
Sbjct: 596  GMPKRFWAEAVTTAAYLVNRSPSTAIGLKTPMEMWSGKK-EEYDNLRVFGTLAYAHVKQG 654

Query: 496  KLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRD-VTFDEHAMLKTVTSEKTDSAL 326
            KLEPRA R + +G   GVKG++LW ++  S K+  SRD V F E    K V     + A 
Sbjct: 655  KLEPRAVRGIILGYPEGVKGHKLWRIDDGSPKVFNSRDVVAFREDVYYKDVMGGSIEDA- 713

Query: 325  QQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSE--PIAVRRPRRE 152
                +   Q+EVE             ++ + + DEEE+       QS    IA  RPRR+
Sbjct: 714  GFSNKEDVQIEVE-------------SDGMKNSDEEEMPESSSHGQSPGYSIAKERPRRQ 760

Query: 151  IHKPARFAD------MVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSL 5
            I  P RF D       V  A  + D   P T+ EA+ S +SE+W+ AM+EEM SL
Sbjct: 761  IKPPLRFRDEEDISAYVFMAAELEDSTEPLTYNEAIASEDSERWQVAMQEEMDSL 815


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  581 bits (1498), Expect = 0.0
 Identities = 337/857 (39%), Positives = 478/857 (55%), Gaps = 35/857 (4%)
 Frame = -3

Query: 2467 GRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTI-NR 2291
            G + + +++  +   D    F +WQ ++   L QQ LD A+             +   +R
Sbjct: 32   GLIPMASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKDR 91

Query: 2290 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTT 2111
             A   I   LS         E +A  LW  LE   + K   +K+ +K++LF  + +   +
Sbjct: 92   KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 151

Query: 2110 MNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCA 1931
            + DH++ F ++VADL +++V + +EDL L+LL SLP  + +   T+L+  D + L  V  
Sbjct: 152  VMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYD 211

Query: 1930 ALYSYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDE-------C 1772
            AL++ E          + +  +  +V                   +   + +       C
Sbjct: 212  ALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 271

Query: 1771 AFCHEKGHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEFSLVVSPLISR 1631
             +C   GH   +C KL++K          GK  ++   A V + +S+ E  +  +     
Sbjct: 272  KYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQT 331

Query: 1630 SDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 1451
            SD+WILD+  TYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R L
Sbjct: 332  SDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTL 391

Query: 1450 TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTV 1274
            +DVR++PNLK++LISL  L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T+
Sbjct: 392  SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTI 451

Query: 1273 IGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLG 1097
            +G  AAV+DS +   S+A  LWHMRLGH  E  L  L+K+ LL    + KL FCEHC+ G
Sbjct: 452  LGNVAAVSDSLSN--SDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFG 509

Query: 1096 KQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKD 917
            K KRVKF T+ H TEGILDYVHSD+WGP+   S GG  Y +T +DD+SR+VW Y +K K 
Sbjct: 510  KHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKY 569

Query: 916  EVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNG 737
            +   +F +WKT +E QT +K+K+LRTDNG E+ S  F+  C   GIV H+TV  TPQQNG
Sbjct: 570  QAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNG 629

Query: 736  VAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPV 557
            VAERMN  ++ K RCMLSNA L +Q WAEAV+   +LINR PS A   KTP+EVWSG P 
Sbjct: 630  VAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSP- 688

Query: 556  TDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFD 377
             +Y  LRVFG   Y HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F 
Sbjct: 689  ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFH 748

Query: 376  EHAML-----KTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEV 212
            E  +L       V  E  + A  QVE         E   +    D PV E   D D   V
Sbjct: 749  ESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIE---DSDSSIV 805

Query: 211  QTQKPLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSP 53
            Q          IA  +P+R I  P R+   A++VAYAL V ++      P T+ EA+ S 
Sbjct: 806  QQ----SSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSD 861

Query: 52   ESEKWKGAMEEEMQSLQ 2
            +  +W  AM +EM+SL+
Sbjct: 862  DCNRWITAMHDEMESLK 878


>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
          Length = 1318

 Score =  582 bits (1500), Expect = 0.0
 Identities = 335/841 (39%), Positives = 484/841 (57%), Gaps = 24/841 (2%)
 Frame = -3

Query: 2455 VPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL--AC 2282
            +P+ +  +E F G   FG+W+ ++   L QQG   A+             +  N +  A 
Sbjct: 1    MPSTKYEIEKFTGVNDFGLWRLKMKALLVQQGCLEALKGEAAMNAELTAAEKTNMIEKAH 60

Query: 2281 GTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMND 2102
              I   L  +       E +A  LW  LE  ++ KS  N+L +K+ L+ F+      + +
Sbjct: 61   SAILLSLGDKVLRQVSKETTASGLWAKLESLYMTKSLVNRLYLKQALYSFKMVEDKVLAE 120

Query: 2101 HITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALY 1922
             +  FN+L+ DL N+DV   DED AL+LL +LP    H + TLL+G++ ++   V +ALY
Sbjct: 121  QLDMFNKLILDLENIDVKIDDEDQALLLLCALPRSHAHFKETLLYGRESLTFEEVQSALY 180

Query: 1921 SYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDE-----CAFCHE 1757
            S +L          +    E L                   ++K   DE     C  C +
Sbjct: 181  SKDLNERKEHKPSTVG---EGLAVKGKFLRKNGKFDKKGKSQSKSYSDEVSGIRCYHCKK 237

Query: 1756 KGHWKKDCP-KLKNKGKAPQDACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPV 1580
            +GH +K CP +LK+ G    +A + + + E    LVVS   SR  EWI+DSGCT+HM+P 
Sbjct: 238  EGHTRKVCPERLKDHG-GNGNAAIVQDDFESSDVLVVSSSDSRK-EWIMDSGCTWHMTPN 295

Query: 1579 KEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLG 1400
            K+ F    + +GG V +GN+ ACK  G+GS+R K HD S R+LT+VRYVP+LK+NL+SLG
Sbjct: 296  KDLFEELCDQDGGSVLLGNNKACKIAGVGSVRFKLHDESIRLLTEVRYVPDLKRNLLSLG 355

Query: 1399 ALESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAA 1220
              + KG +      +L+   GS  V++G+++  LY  +   V G+  V  ++   ++E  
Sbjct: 356  EFDKKGYVFQGEKSILRVMKGSKEVLRGVKKQGLYTLEAEVVSGSTNVVSTKPLSKTE-- 413

Query: 1219 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 1040
             +WHMRLGH  E+ L  L KQ LL   K+ KL FCE CV GK  RVKF      T G LD
Sbjct: 414  -IWHMRLGHVSERGLVELGKQNLLGGDKIEKLKFCEPCVFGKSCRVKFNKGKQRTHGSLD 472

Query: 1039 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 860
            Y+H+D+WGP++ PS  G  YF++ +DD+SR++WV+  KTKDE    F  WKT +ENQTGR
Sbjct: 473  YIHADLWGPARCPSHSGARYFLSIVDDYSRKLWVFIQKTKDETFENFKSWKTLVENQTGR 532

Query: 859  KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 680
            K+K LRTDNG E+ ++ F   C   GI RH T   TPQQNG+AER NRT++E+VRCML++
Sbjct: 533  KVKRLRTDNGLEFCNEAFDIFCAASGIARHRTTAGTPQQNGLAERFNRTILERVRCMLTS 592

Query: 679  AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 500
            AGL +  WAEAV+ A +LINR PS+A+  KTP EVWSG P  D D LRVFG + Y H+++
Sbjct: 593  AGLKKVFWAEAVSTATYLINRCPSTALDMKTPEEVWSGHP-PDLDKLRVFGCVAYAHIRQ 651

Query: 499  SKLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRDVTFDEHAML--KTV----TSE 344
             K+EPRA + +FMG   GVK YRLWCLE   K+ + SRDV F+E  M   KTV    ++E
Sbjct: 652  DKVEPRALKCMFMGYPEGVKAYRLWCLEPGHKRCITSRDVVFNEAEMAFKKTVDVGRSTE 711

Query: 343  KTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEP---IA 173
             +D  L+QVE  P +VE  +  +            + D+ EEE +  + +++++    ++
Sbjct: 712  TSDEELEQVE-IPVEVEHVDAEL-----------HIPDEVEEEAENAEEVEETDDDYLLS 759

Query: 172  VRRPRREIHKPAR--FADMVAYAL---PVIDDDVPFTFREAVRSPESEKWKGAMEEEMQS 8
              R RR I  P R  +AD++AYAL     + D+ P  ++E +RS    +W  AM++EM+S
Sbjct: 760  RDRSRRVIKAPQRLGYADLIAYALISASEVLDEEPRDYKEVMRSRNKTEWLKAMDDEMKS 819

Query: 7    L 5
            L
Sbjct: 820  L 820


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  581 bits (1498), Expect = 0.0
 Identities = 337/857 (39%), Positives = 478/857 (55%), Gaps = 35/857 (4%)
 Frame = -3

Query: 2467 GRMLVPNIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTI-NR 2291
            G + + +++  +   D    F +WQ ++   L QQ LD A+             +   +R
Sbjct: 32   GLIPMASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKKDR 91

Query: 2290 LACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTT 2111
             A   I   LS         E +A  LW  LE   + K   +K+ +K++LF  + +   +
Sbjct: 92   KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 151

Query: 2110 MNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCA 1931
            + DH++ F ++VADL +++V + +EDL L+LL SLP  + +   T+L+  D + L  V  
Sbjct: 152  VMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYD 211

Query: 1930 ALYSYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDE-------C 1772
            AL++ E          + +  +  +V                   +   + +       C
Sbjct: 212  ALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 271

Query: 1771 AFCHEKGHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEFSLVVSPLISR 1631
             +C   GH   +C KL++K          GK  ++   A V + +S+ E  +  +     
Sbjct: 272  KYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQT 331

Query: 1630 SDEWILDSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVL 1451
            SD+WILD+  TYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R L
Sbjct: 332  SDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTL 391

Query: 1450 TDVRYVPNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTV 1274
            +DVR++PNLK++LISL  L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T+
Sbjct: 392  SDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTI 451

Query: 1273 IGT-AAVADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLG 1097
            +G  AAV+DS +   S+A  LWHMRLGH  E  L  L+K+ LL    + KL FCEHC+ G
Sbjct: 452  LGNVAAVSDSLSN--SDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFG 509

Query: 1096 KQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKD 917
            K KRVKF T+ H TEGILDYVHSD+WGP+   S GG  Y +T +DD+SR+VW Y +K K 
Sbjct: 510  KHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKY 569

Query: 916  EVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNG 737
            +   +F +WKT +E QT +K+K+LRTDNG E+ S  F+  C   GIV H+TV  TPQQNG
Sbjct: 570  QAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNG 629

Query: 736  VAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPV 557
            VAERMN  ++ K RCMLSNA L +Q WAEAV+   +LINR PS A   KTP+EVWSG P 
Sbjct: 630  VAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSP- 688

Query: 556  TDYDSLRVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFD 377
             +Y  LRVFG   Y HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F 
Sbjct: 689  ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFH 748

Query: 376  EHAML-----KTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEV 212
            E  +L       V  E  + A  QVE         E   +    D PV E   D D   V
Sbjct: 749  ESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIE---DSDSSIV 805

Query: 211  QTQKPLDQSEPIAVRRPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSP 53
            Q          IA  +P+R I  P R+   A++VAYAL V ++      P T+ EA+ S 
Sbjct: 806  QQ----SSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSD 861

Query: 52   ESEKWKGAMEEEMQSLQ 2
            +  +W  AM +EM+SL+
Sbjct: 862  DCNRWITAMHDEMESLK 878


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  594 bits (1532), Expect = 0.0
 Identities = 341/837 (40%), Positives = 476/837 (56%), Gaps = 35/837 (4%)
 Frame = -3

Query: 2407 FGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTI-NRLACGTIRSCLSREQKYAFKN 2231
            F +WQ ++   L QQ LD A+             +   +R A   I   LS         
Sbjct: 224  FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 283

Query: 2230 ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 2051
            E  A  LW  LE   + K   +K+ +K+ LF  + +   ++ DH++AF +++ADL +++V
Sbjct: 284  EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 343

Query: 2050 TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXNIAA 1871
             + +EDL L+LL SLP  + +   T+L+ +D ++L  V  AL+  E          + + 
Sbjct: 344  KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 403

Query: 1870 DDEALVAXXXXXXXXXXXXXXXXXKAKLDKDE-------CAFCHEKGHWKKDCPKLKNK- 1715
             +  +V                   +   + +       C +C   GH   +C KL +K 
Sbjct: 404  AEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKD 463

Query: 1714 ---------GKAPQD---ACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEW 1571
                     GK  ++   A V + +S+ E  +  +     SD+WIL++ C YHM P ++W
Sbjct: 464  KRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDW 523

Query: 1570 FFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALE 1391
            F  +E +  G V MG+D  C+  GIG++++K  DG  R L+DVR++PNLK++LISL  L+
Sbjct: 524  FATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLD 583

Query: 1390 SKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKESEAAK 1217
             KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T++G  AAV+DS +   S+A  
Sbjct: 584  RKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN--SDATN 641

Query: 1216 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 1037
            LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGILDY
Sbjct: 642  LWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY 701

Query: 1036 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 857
            VHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E QT RK
Sbjct: 702  VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 761

Query: 856  IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 677
            +K+LRTDNG E+ S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RC+LSNA
Sbjct: 762  VKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNA 821

Query: 676  GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 497
            GL +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P  +Y  LRVFG   Y HV   
Sbjct: 822  GLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYAHVDNG 880

Query: 496  KLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTSEKTDS 332
            KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML       V  E  + 
Sbjct: 881  KLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEK 940

Query: 331  ALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRRE 152
            A  QVE         E   +    D PV E    D    +  Q P      IA  RP+R 
Sbjct: 941  ASVQVEHLISSGHAPEKEDVAINQDEPVIE----DSNSSIVQQSP---KRSIAKDRPKRN 993

Query: 151  IHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQSLQ 2
            I  P R+   A++VAYAL V ++      P T+ EA+ S +  +W  AM +EM+SL+
Sbjct: 994  IKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLE 1050


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 780

 Score =  557 bits (1436), Expect = 0.0
 Identities = 315/760 (41%), Positives = 444/760 (58%), Gaps = 17/760 (2%)
 Frame = -3

Query: 2449 NIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTINRL--ACGT 2276
            N +  +E F G   FG+W+ ++   L QQG   AI             +  N +  A   
Sbjct: 3    NTKYDIEKFSGENDFGLWRIKMEAILIQQGCAEAIKGEEKMSSSLTQKEKTNMIEKARSA 62

Query: 2275 IRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHI 2096
            I  CL  +       E +A  +W  LE  ++ KS  ++L +K+RL+ F+     ++ D +
Sbjct: 63   IILCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLKQRLYSFKMTETKSIVDQL 122

Query: 2095 TAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKD-DVSLAVVCAALYS 1919
              FN+++ DL N++V   DED AL+LL+SLP  +EH +  +L+GK+ D++L  V  ++ +
Sbjct: 123  AEFNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSIRT 182

Query: 1918 YELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKL-----DKDECAFCHEK 1754
             EL         +   + E+L                   ++K       K +C +CH+ 
Sbjct: 183  KELQRQQDNKTDD---NGESLNVSRGRSEKKGQSQKGKKARSKSKIGDRSKFKCFYCHKV 239

Query: 1753 GHWKKDCPKLKNKGKAPQD----ACVAEG-ESEDEFSLVVSPLISRSDEWILDSGCTYHM 1589
            GH+KK+CP+     K+  D    A +++G ES D   LVV+   ++ D W++DSGC+YHM
Sbjct: 240  GHFKKNCPERNRDQKSSADSADIAAISDGYESADV--LVVTTSQTQKD-WVMDSGCSYHM 296

Query: 1588 SPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLI 1409
             P K++F   +   GG V +G+D+ C+  GIG++RLK  D    +L DVRYVP+LK+NLI
Sbjct: 297  CPKKDYFETLKLKEGGTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYVPDLKRNLI 356

Query: 1408 SLGALESKGLIVTLRDGVLKATSGSLVVIKGIR--RNNLYYYQGNTVIGTAAVADSRNEK 1235
            S+   +S G     + GVLK  +GSLV+ KG +   N L+   G+TV+  A++A +  +K
Sbjct: 357  SISMFDSLGYATKTQHGVLKILNGSLVIAKGNKDKNNGLFVLDGSTVMAHASIARNDIDK 416

Query: 1234 ESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNT 1055
                 KLWH+RLGH  E+ L  L KQ LLK  K+ KL+FCEHCVLGK  RVKFGT IH +
Sbjct: 417  ----TKLWHLRLGHVSERGLIELEKQNLLKGDKLDKLEFCEHCVLGKSHRVKFGTGIHVS 472

Query: 1054 EGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIE 875
                +YVH+D+WGPS+  +LGG  YF+T IDDF+RRVW+Y +K K E    F  W T I+
Sbjct: 473  SRPFEYVHADLWGPSRVKTLGGGSYFLTIIDDFTRRVWLYVLKDKTETYKKFRDWYTLIQ 532

Query: 874  NQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVR 695
            NQ   K+KVLRTDNG E+ S+ F E C   GI RH TV  TPQQNG+AERMNRT++E+VR
Sbjct: 533  NQLETKLKVLRTDNGLEFLSEQFAEFCRNQGIKRHRTVPHTPQQNGLAERMNRTILERVR 592

Query: 694  CMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY 515
            CML  +GL ++ W EA T A +LINR PSSA+  KTP+E W GKPV DY +LRVFGSL Y
Sbjct: 593  CMLLGSGLSKKFWGEAATTAAYLINRCPSSALNNKTPMEAWHGKPV-DYSNLRVFGSLAY 651

Query: 514  YHVKESKLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRDVTFDEHAMLKTVTSEK 341
             HVKE KLEPRA + +F+G   GVKGY+LW LE    K + SRDVTFDE  +      + 
Sbjct: 652  AHVKEGKLEPRAVKCVFIGYPDGVKGYKLWKLEKGGGKCIISRDVTFDETKLGILEEQQM 711

Query: 340  TDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDE 221
             +S+ +   +   +       I   +N   +T+  S   E
Sbjct: 712  EESSSKDHVQFEVESSTHSSEINQTENYEEITDGASSSGE 751


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  571 bits (1472), Expect = 0.0
 Identities = 323/786 (41%), Positives = 451/786 (57%), Gaps = 21/786 (2%)
 Frame = -3

Query: 2296 NRLACGTIRSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSG 2117
            +R A   I+  LS +       E +A +LW  LE   + K   +K+ +K +LF  + +  
Sbjct: 57   DRKALSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQES 116

Query: 2116 TTMNDHITAFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVV 1937
             ++ +HI+ F ++VADL++++V F DEDL L+LL SLP  +E+   T+L  +D+++LA V
Sbjct: 117  GSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEV 176

Query: 1936 CAALYSYELXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAK-----LDKDEC 1772
              AL + E          + +  +   V                  K++       K  C
Sbjct: 177  YEALQNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFC 236

Query: 1771 AFCHEKGHWKKDCPKLKNKGKAPQDACV-----AEGESEDEFSLVVSPLISRSDEWILDS 1607
             +C +K H+ K+C KL+NK K   D        A+     +  +V +  ++  DEWILD+
Sbjct: 237  KYCKKKIHFIKECWKLQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDT 296

Query: 1606 GCTYHMSPVKEWFFNFEEI-NGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVP 1430
             C++H+   ++WF +++ + NG VV MGNDN  +  GIGS+++K HDG TR L DVR++P
Sbjct: 297  ACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIP 356

Query: 1429 NLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVA 1253
             + +NLISL  L+++G   +   GV+K + GSLV + G +   NLY  +G+T+ G+   A
Sbjct: 357  GMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAA 416

Query: 1252 DSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFG 1073
             +  + E     LWHMRLGH  E  +  L K+ LL       + FCE CV GK KRVKF 
Sbjct: 417  -AVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFN 475

Query: 1072 TAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLK 893
            T++H T+GILDYVH+D+WGPS+ PSLGG  Y +T IDD+SR+VW Y +K KD+    F +
Sbjct: 476  TSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKE 535

Query: 892  WKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRT 713
            WK  IE QT +++KVLRTDN GE+ SD F + C K GIVRH T+  TPQQNGVAERMNRT
Sbjct: 536  WKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRT 595

Query: 712  LVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRV 533
            ++ K RCMLSNA + ++ WAEA   A +LINR PS  +  KTP+E+WSG P  DY  LRV
Sbjct: 596  IISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMP-ADYSQLRV 654

Query: 532  FGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTV 353
            FG   Y HV   KLEPRA + LF+G   GVKGY+LW  E+ K   SR V F+E  M    
Sbjct: 655  FGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMFNDS 714

Query: 352  TSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPL--DQSEP 179
                        E+    V+VE +       D+  TE + +D  + VQ   P+   Q EP
Sbjct: 715  LPTDVIPGGSDEEQQYVSVQVEHV-------DDQETEIVGNDVNDTVQHSPPVLQPQDEP 767

Query: 178  IAVRRPRREIHKPARF---ADMVAYAL----PVIDDDVPFTFREAVRSPESEKWKGAMEE 20
            IA RR +R    P R     DMV YA      V +   P T+ EAV S + EKW  AM+E
Sbjct: 768  IAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQE 827

Query: 19   EMQSLQ 2
            EMQSL+
Sbjct: 828  EMQSLE 833


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  578 bits (1490), Expect = 0.0
 Identities = 333/817 (40%), Positives = 463/817 (56%), Gaps = 35/817 (4%)
 Frame = -3

Query: 2407 FGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTI-NRLACGTIRSCLSREQKYAFKN 2231
            F +WQ ++   L QQ LD A+             +   +R A   I   LS         
Sbjct: 17   FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 76

Query: 2230 ENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHITAFNQLVADLLNLDV 2051
            E  A  LW  LE   + K   +K+ +K+ LF  + +   ++ DH++AF +++ADL +++V
Sbjct: 77   EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 136

Query: 2050 TFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYELXXXXXXXXXNIAA 1871
             + +EDL L+LL SLP  + +   T+L+ +D ++L  V  AL+  E          + + 
Sbjct: 137  KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 196

Query: 1870 DDEALVAXXXXXXXXXXXXXXXXXKAKLDKDE-------CAFCHEKGHWKKDCPKLKNK- 1715
             +  +V                   +   + +       C +C   GH   +C KL +K 
Sbjct: 197  AEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKD 256

Query: 1714 ---------GKAPQD---ACVAEGESEDEFSLVVSPLISRSDEWILDSGCTYHMSPVKEW 1571
                     GK  ++   A V + +S+ E  +  +     SD+WIL++ C YHM P ++W
Sbjct: 257  KRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDW 316

Query: 1570 FFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYVPNLKKNLISLGALE 1391
            F  +E +  G V MG+D  C+  GIG++++K  DG  R L+DVR++PNLK++LISL  L+
Sbjct: 317  FATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLD 376

Query: 1390 SKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKESEAAK 1217
             KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T++G  AAV+DS +   S+A  
Sbjct: 377  RKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN--SDATN 434

Query: 1216 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 1037
            LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGILDY
Sbjct: 435  LWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY 494

Query: 1036 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 857
            VHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E QT RK
Sbjct: 495  VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 554

Query: 856  IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 677
            +K+LRTDNG E+ S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RC+LSNA
Sbjct: 555  VKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNA 614

Query: 676  GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 497
            GL +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P  +Y  LRVFG   Y HV   
Sbjct: 615  GLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYAHVDNG 673

Query: 496  KLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTSEKTDS 332
            KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML       V  E  + 
Sbjct: 674  KLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEK 733

Query: 331  ALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRRE 152
            A  QVE         E   +    D PV E    D    +  Q P      IA  RP+R 
Sbjct: 734  ASVQVEHLISSGHAPEKEDVAINQDEPVIE----DSNSSIVQQSP---KRSIAKDRPKRN 786

Query: 151  IHKPARF---ADMVAYALPVIDD----DVPFTFREAV 62
            I  P R+   A++VAYAL V ++      P T+ EA+
Sbjct: 787  IKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAI 823


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  566 bits (1458), Expect = 0.0
 Identities = 317/785 (40%), Positives = 449/785 (57%), Gaps = 28/785 (3%)
 Frame = -3

Query: 2449 NIRISVETFDGTGHFGMWQGEVLDCLFQQGLDIAIXXXXXXXXXXXXXKTI-NRLACGTI 2273
            +++  +   D    F +WQ ++   L QQ LD A+             +   +R A   I
Sbjct: 3    SLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKRDRKAMSYI 62

Query: 2272 RSCLSREQKYAFKNENSAYKLWKALEDKFLKKSGQNKLLMKKRLFRFEYRSGTTMNDHIT 2093
               LS         E +A  LW  LE   + K   +K+ +K++LF  + +   ++ DH++
Sbjct: 63   HLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLS 122

Query: 2092 AFNQLVADLLNLDVTFSDEDLALMLLSSLPDEFEHLETTLLHGKDDVSLAVVCAALYSYE 1913
            AF ++VADL +++V + ++DLAL+LL SLP  + +   T+L+ +D ++L  V  AL++ E
Sbjct: 123  AFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKE 182

Query: 1912 LXXXXXXXXXNIAADDEALVAXXXXXXXXXXXXXXXXXKAKLDKDE-------CAFCHEK 1754
                      + +  +  +V                   +   + +       C +C   
Sbjct: 183  KMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRD 242

Query: 1753 GHWKKDCPKLKNK----------GKAPQD---ACVAEGESEDEFSLVVSPLISRSDEWIL 1613
            GH    C KL++K          GK  ++   A V + +S+ E  +  +     SD+WIL
Sbjct: 243  GHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWIL 302

Query: 1612 DSGCTYHMSPVKEWFFNFEEINGGVVYMGNDNACKTTGIGSIRLKNHDGSTRVLTDVRYV 1433
            D+ CTYHM P ++WF  +E + GG V MG+D  C+  GIG++++K  DG  R L+DVR++
Sbjct: 303  DTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHI 362

Query: 1432 PNLKKNLISLGALESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAA- 1259
            PNLK++LISL  L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ QG T++G  A 
Sbjct: 363  PNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVAT 422

Query: 1258 VADSRNEKESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVK 1079
            V+DS +   S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVK
Sbjct: 423  VSDSLSN--SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVK 480

Query: 1078 FGTAIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIF 899
            F T+ H TEGILDYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F
Sbjct: 481  FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVF 540

Query: 898  LKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMN 719
             +WKT +E QT RK+K+LRTDNG E+ S  F+  C   GIVRH+TV  TPQQNGVAERMN
Sbjct: 541  KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600

Query: 718  RTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSL 539
            R ++ K RCMLSNAGL +Q WAEAV+ A +LINR PS A   KTP+EVWSG P  +Y  L
Sbjct: 601  RIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSP-ANYSDL 658

Query: 538  RVFGSLVYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML- 362
            +VFG   Y HV   KLEPRA + +F+G  S VKGY+LWC E+KK++ SR+V F E  ML 
Sbjct: 659  KVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVISRNVVFHESIMLH 718

Query: 361  ----KTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPL 194
                  V  E  + A  QVE         E   +    D PV ED SD    +   ++ +
Sbjct: 719  DKPSTNVPVESQEKASVQVEHLINSGHAPEKEDVAINQDAPVIED-SDSSTVQQSPKRSI 777

Query: 193  DQSEP 179
             + +P
Sbjct: 778  AKDKP 782