BLASTX nr result
ID: Rehmannia31_contig00012636
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia31_contig00012636
(384 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_862801.1| hypothetical protein CafeCp090 [Calycanthus flo... 142 4e-42
ref|YP_358631.1| hypothetical protein PhapfoPp085 [Phalaenopsis ... 130 3e-37
gb|OAY85602.1| 30S ribosomal protein S12, chloroplastic [Ananas ... 130 5e-36
emb|CAA30522.1| ORF 143 (chloroplast) [Glycine max] >gi|73440260... 101 3e-25
gb|KQJ97119.1| hypothetical protein BRADI_3g28913v3 [Brachypodiu... 93 2e-22
ref|YP_001109550.1| hypothetical protein Poptr_cp072 [Populus tr... 90 2e-21
gb|EFH70943.1| hypothetical protein ARALYDRAFT_892903 [Arabidops... 82 4e-18
gb|KRH54918.1| hypothetical protein GLYMA_06G218700 [Glycine max] 80 4e-17
gb|KVI11330.1| Ribosomal protein S12/S23 [Cynara cardunculus var... 79 4e-16
gb|KVG87221.1| hypothetical protein Ccrd_026132, partial [Cynara... 75 4e-15
gb|AFK49064.1| unknown [Lotus japonicus] 75 6e-15
gb|OAY32019.1| hypothetical protein MANES_14G160100, partial [Ma... 70 2e-13
ref|XP_019246421.1| PREDICTED: ATP synthase subunit alpha, chlor... 67 3e-11
ref|YP_009184034.1| ribosomal protein S12 (chloroplast) [Dendrob... 65 3e-11
gb|PLY90520.1| hypothetical protein LSAT_2X20640 [Lactuca sativa] 65 4e-11
gb|PHU22444.1| 30S ribosomal protein S12, chloroplastic [Capsicu... 62 3e-09
ref|YP_001312254.1| hypothetical protein CYtaCp089 [Cycas taitun... 58 1e-08
ref|YP_007474607.1| hypothetical_protein (chloroplast) [Cycas re... 53 9e-07
>ref|NP_862801.1| hypothetical protein CafeCp090 [Calycanthus floridus var. glaucus]
ref|NP_862814.1| hypothetical protein CafeCp092 [Calycanthus floridus var. glaucus]
sp|Q7Y618.1|YCX1_CALFG RecName: Full=Uncharacterized 8.8 kDa protein in rps12-tRNA-Val
intergenic region (chloroplast) [Calycanthus floridus
var. glaucus]
emb|CAD28768.1| hypothetical protein (chloroplast) [Calycanthus floridus var.
glaucus]
emb|CAD28782.1| hypothetical protein (chloroplast) [Calycanthus floridus var.
glaucus]
Length = 75
Score = 142 bits (359), Expect = 4e-42
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = -1
Query: 237 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTS 58
MRQKIFFLKRFDSELLYVQGSILK FQRFSLTLSVSTNNSKYLDFFRTGPSQIA IRSTS
Sbjct: 1 MRQKIFFLKRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIATIRSTS 60
Query: 57 FYTISETQGLNRMDM 13
FYTISETQGLNRMDM
Sbjct: 61 FYTISETQGLNRMDM 75
>ref|YP_358631.1| hypothetical protein PhapfoPp085 [Phalaenopsis aphrodite subsp.
formosana]
gb|AAW82567.1| hypothetical protein (chloroplast) [Phalaenopsis aphrodite subsp.
formosana]
Length = 77
Score = 130 bits (327), Expect = 3e-37
Identities = 67/75 (89%), Positives = 67/75 (89%)
Frame = +2
Query: 56 KEVLRIIAI*LGPVLKKSRYFELFVDTDKVRENL*NYFNIEPWTYKSSESNLFRKKIFCL 235
KEVLRIIAI LGPVLKKSRYFELFVDTDK RENL NY NI PWTY SSESNLFRKK FCL
Sbjct: 3 KEVLRIIAIGLGPVLKKSRYFELFVDTDKGRENLLNYSNIGPWTYSSSESNLFRKKSFCL 62
Query: 236 MVACSSPLTKLSLLG 280
MVACSSPL KLSLLG
Sbjct: 63 MVACSSPLPKLSLLG 77
>gb|OAY85602.1| 30S ribosomal protein S12, chloroplastic [Ananas comosus]
Length = 182
Score = 130 bits (328), Expect = 5e-36
Identities = 76/111 (68%), Positives = 76/111 (68%)
Frame = -1
Query: 384 DRQQGRSSAL*ILIQDLYHLMMPCESLETCEVYG*PNNESFVRGLEQATMRQKIFFLKRF 205
DRQQGRSSAL GLEQATMRQKIFFLKRF
Sbjct: 83 DRQQGRSSAL---------------------------------GLEQATMRQKIFFLKRF 109
Query: 204 DSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 52
DSELLYVQG ILK FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY
Sbjct: 110 DSELLYVQGPILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 160
>emb|CAA30522.1| ORF 143 (chloroplast) [Glycine max]
gb|KHN32086.1| Putative 8.8 kDa protein in rps12-tRNA-Val intergenic region
[Glycine soja]
Length = 143
Score = 101 bits (252), Expect(2) = 3e-25
Identities = 53/62 (85%), Positives = 54/62 (87%)
Frame = -1
Query: 237 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTS 58
MRQKIFFLK+FDSEL YVQG I K FQRFSLTLSVSTNNSK LDFFR GPSQIAMIRST
Sbjct: 1 MRQKIFFLKKFDSELRYVQGPIWKEFQRFSLTLSVSTNNSKCLDFFRIGPSQIAMIRSTL 60
Query: 57 FY 52
Y
Sbjct: 61 HY 62
Score = 41.2 bits (95), Expect(2) = 3e-25
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -3
Query: 55 LHNFGNPRTQSYGYVKYR 2
LH FGNPRTQSYGYVKYR
Sbjct: 60 LHYFGNPRTQSYGYVKYR 77
>gb|KQJ97119.1| hypothetical protein BRADI_3g28913v3 [Brachypodium distachyon]
Length = 84
Score = 93.2 bits (230), Expect = 2e-22
Identities = 56/81 (69%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Frame = -1
Query: 237 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTS 58
MRQKI FLKRFDSELLY RFSLTLSVSTNNSKYLDFFRTGPS +AMIRSTS
Sbjct: 1 MRQKILFLKRFDSELLY----------RFSLTLSVSTNNSKYLDFFRTGPS-LAMIRSTS 49
Query: 57 F--YTISETQGLNRMDM*NTG 1
F I +++ +RMDM NTG
Sbjct: 50 FSITLIRKSKDSDRMDMENTG 70
>ref|YP_001109550.1| hypothetical protein Poptr_cp072 [Populus trichocarpa]
ref|YP_001109569.1| hypothetical protein Poptr_cp092 [Populus trichocarpa]
gb|ABO36754.1| conserved hypothetical protein (chloroplast) [Populus trichocarpa]
gb|ABO36773.1| conserved hypothetical protein (chloroplast) [Populus trichocarpa]
Length = 65
Score = 90.1 bits (222), Expect = 2e-21
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -1
Query: 147 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISETQGLNRMDM*NTG 1
+TLSVSTNNSK LDFFR GPSQIAMIRSTSFYTISETQGLNRMDM NTG
Sbjct: 1 MTLSVSTNNSKCLDFFRAGPSQIAMIRSTSFYTISETQGLNRMDMENTG 49
>gb|EFH70943.1| hypothetical protein ARALYDRAFT_892903 [Arabidopsis lyrata subsp.
lyrata]
Length = 60
Score = 81.6 bits (200), Expect = 4e-18
Identities = 41/45 (91%), Positives = 42/45 (93%)
Frame = -1
Query: 147 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISETQGLNRMDM 13
+TLSVSTNNSK LDFFRT PSQIAMIRST FYTISETQGLNRMDM
Sbjct: 16 VTLSVSTNNSKCLDFFRTDPSQIAMIRSTYFYTISETQGLNRMDM 60
>gb|KRH54918.1| hypothetical protein GLYMA_06G218700 [Glycine max]
Length = 87
Score = 80.1 bits (196), Expect = 4e-17
Identities = 42/51 (82%), Positives = 43/51 (84%)
Frame = -1
Query: 237 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFFRTGPS 85
MRQKIFFLK+FDSEL YVQG I K FQRFS TLSVSTNNSK LDFFR G S
Sbjct: 1 MRQKIFFLKKFDSELRYVQGPIWKEFQRFSWTLSVSTNNSKCLDFFRIGLS 51
>gb|KVI11330.1| Ribosomal protein S12/S23 [Cynara cardunculus var. scolymus]
Length = 157
Score = 79.3 bits (194), Expect = 4e-16
Identities = 42/75 (56%), Positives = 48/75 (64%)
Frame = -3
Query: 256 GTGAGYHETKDLLSKEIRFGTLICPRFNIEIISEVFPDFVRVNKQFEIPRLF*NRSESNS 77
G GAGYHETKD LSKEI+F T+ICPRFNIE SEVFPDFV N+SESN+
Sbjct: 81 GGGAGYHETKDFLSKEIQFRTIICPRFNIEKNSEVFPDFVH------------NKSESNN 128
Query: 76 NDSKHFFLHNFGNPR 32
ND + F P+
Sbjct: 129 NDFEALLFMLFRKPK 143
>gb|KVG87221.1| hypothetical protein Ccrd_026132, partial [Cynara cardunculus var.
scolymus]
Length = 113
Score = 75.5 bits (184), Expect = 4e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +2
Query: 164 YFNIEPWTYKSSESNLFRKKIFCLMVACSSPLTKLS 271
+FNIEPWTY SSESNLFRKKIFCLMVACSSPLTKLS
Sbjct: 32 FFNIEPWTYNSSESNLFRKKIFCLMVACSSPLTKLS 67
>gb|AFK49064.1| unknown [Lotus japonicus]
Length = 128
Score = 75.5 bits (184), Expect = 6e-15
Identities = 42/64 (65%), Positives = 45/64 (70%)
Frame = -3
Query: 193 LICPRFNIEIISEVFPDFVRVNKQFEIPRLF*NRSESNSNDSKHFFLHNFGNPRTQSYGY 14
+ICPR NIE ISEVF DFVRVNKQFE+PRLF R + LH F N RTQSYGY
Sbjct: 1 MICPRSNIERISEVFLDFVRVNKQFEMPRLF--RLGPSQIAMIRSTLHYFENLRTQSYGY 58
Query: 13 VKYR 2
VKYR
Sbjct: 59 VKYR 62
>gb|OAY32019.1| hypothetical protein MANES_14G160100, partial [Manihot esculenta]
Length = 48
Score = 69.7 bits (169), Expect = 2e-13
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -1
Query: 156 RFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYTISETQGLNRMDM 13
RF LSVS NNSK L+FFRT PSQIA+IR++SFYTIS+ Q LNRMDM
Sbjct: 1 RFFFILSVSINNSKCLNFFRTSPSQIAIIRNSSFYTISKIQELNRMDM 48
>ref|XP_019246421.1| PREDICTED: ATP synthase subunit alpha, chloroplastic-like
[Nicotiana attenuata]
Length = 177
Score = 67.4 bits (163), Expect = 3e-11
Identities = 31/34 (91%), Positives = 31/34 (91%)
Frame = +1
Query: 4 CILHIHTIESLGFRNCVKRSASNHCYLTRTCSKK 105
CILHIHTIESLGFRN VKRSASNHCYLTRT KK
Sbjct: 61 CILHIHTIESLGFRNSVKRSASNHCYLTRTVLKK 94
>ref|YP_009184034.1| ribosomal protein S12 (chloroplast) [Dendrobium chrysotoxum]
gb|ALN98160.1| ribosomal protein S12 (chloroplast) [Dendrobium chrysotoxum]
Length = 101
Score = 64.7 bits (156), Expect(2) = 3e-11
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 156 RFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSF 55
RFSL LSVSTNNSKYLDFFRTGPS IAMIRSTSF
Sbjct: 38 RFSLPLSVSTNNSKYLDFFRTGPSPIAMIRSTSF 71
Score = 30.8 bits (68), Expect(2) = 3e-11
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 53 TQFRKPKDSIVWICK 9
T FRKPKDSIVWI K
Sbjct: 74 TLFRKPKDSIVWISK 88
>gb|PLY90520.1| hypothetical protein LSAT_2X20640 [Lactuca sativa]
Length = 124
Score = 65.5 bits (158), Expect = 4e-11
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = -3
Query: 94 RSESNSNDSKHFFLHNFGNPRTQSYGYVKYR 2
RSESNSND KHFFLH FGNPRTQSYGYVKYR
Sbjct: 28 RSESNSNDLKHFFLHYFGNPRTQSYGYVKYR 58
Score = 55.1 bits (131), Expect = 5e-07
Identities = 32/46 (69%), Positives = 33/46 (71%)
Frame = -1
Query: 237 MRQKIFFLKRFDSELLYVQGSILK*FQRFSLTLSVSTNNSKYLDFF 100
MRQKIFFLKRFDSELLYVQGSILK FQR S +NS L F
Sbjct: 1 MRQKIFFLKRFDSELLYVQGSILKKFQR-------SESNSNDLKHF 39
>gb|PHU22444.1| 30S ribosomal protein S12, chloroplastic [Capsicum chinense]
Length = 197
Score = 62.4 bits (150), Expect = 3e-09
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = -1
Query: 384 DRQQGRSSAL*ILIQDLYHLMMPCESLETCEVYG 283
D QQG SS L ILIQDLY+LMMPCESLETCEVYG
Sbjct: 164 DHQQGHSSVLYILIQDLYYLMMPCESLETCEVYG 197
>ref|YP_001312254.1| hypothetical protein CYtaCp089 [Cycas taitungensis]
ref|YP_001312284.1| hypothetical protein CYtaCp120 [Cycas taitungensis]
dbj|BAF64995.1| hypothetical protein (chloroplast) [Cycas taitungensis]
dbj|BAF65026.1| hypothetical protein (chloroplast) [Cycas taitungensis]
Length = 64
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
Frame = +1
Query: 1 SCILHIHTIESLGFRNCVKR-SASNHCYLTRTCSKKVEVF 117
S ILHI TI+SLG + VK+ S SNHCYLTRTCSKKVEVF
Sbjct: 25 SRILHICTIKSLGSQKSVKKKSVSNHCYLTRTCSKKVEVF 64
>ref|YP_007474607.1| hypothetical_protein (chloroplast) [Cycas revoluta]
ref|YP_009308177.1| hypothetical protein (chloroplast) [Cycas panzhihuaensis]
gb|AEX99157.1| hypothetical_protein (chloroplast) [Cycas revoluta]
gb|AOS53126.1| hypothetical protein (chloroplast) [Cycas panzhihuaensis]
Length = 60
Score = 52.8 bits (125), Expect = 9e-07
Identities = 28/39 (71%), Positives = 30/39 (76%)
Frame = +1
Query: 1 SCILHIHTIESLGFRNCVKRSASNHCYLTRTCSKKVEVF 117
S ILHI TI+SLG + V SNHCYLTRTCSKKVEVF
Sbjct: 25 SRILHICTIKSLGSQKSV---VSNHCYLTRTCSKKVEVF 60