BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00011877
         (2818 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...  1260   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]        1260   0.0  
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...  1258   0.0  
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...  1254   0.0  
gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...  1254   0.0  
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...  1254   0.0  
ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabid...  1249   0.0  
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...  1248   0.0  
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...  1211   0.0  
gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposo...  1025   0.0  
dbj|GAU28864.1| hypothetical protein TSUD_293160 [Trifolium subt...  1017   0.0  
gb|KZV47435.1| hypothetical protein F511_22511, partial [Dorcoce...   933   0.0  
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             931   0.0  
dbj|GAU34810.1| hypothetical protein TSUD_394360 [Trifolium subt...   895   0.0  
gb|AIC77183.1| polyprotein [Gossypium barbadense]                     914   0.0  
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       890   0.0  
gb|KYP39674.1| Retrovirus-related Pol polyprotein from transposo...   856   0.0  
gb|ACN78973.1| copia-type polyprotein [Glycine max] >gi|22501615...   796   0.0  
gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinen...   751   0.0  
gb|PNX73691.1| copia-type reverse transcriptase-like protein, pa...   725   0.0  

>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score = 1260 bits (3261), Expect = 0.0
 Identities = 624/942 (66%), Positives = 734/942 (77%), Gaps = 5/942 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76   GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+L  ++   +N +++                              
Sbjct: 196  AYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTN 255

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEE
Sbjct: 256  ----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEE 311

Query: 900  KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKV 1079
            K ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+
Sbjct: 312  KIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKM 371

Query: 1080 AVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMN 1259
             VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +
Sbjct: 372  EVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQES 431

Query: 1260 NLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRG 1439
            NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL +K MVRG
Sbjct: 432  NLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRG 491

Query: 1440 LPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLL 1619
            LPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLL
Sbjct: 492  LPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLL 551

Query: 1620 FIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCE 1799
            FIDDFSRKTWVYFLK+KS                SGL IK MR+DRGGEFTSKEF ++CE
Sbjct: 552  FIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCE 611

Query: 1800 ANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSP 1979
             NGIRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSP
Sbjct: 612  DNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP 671

Query: 1980 TRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKG 2159
            T+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKG
Sbjct: 672  TKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKG 731

Query: 2160 YKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXX 2339
            YKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE    E + EEP     
Sbjct: 732  YKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP---EPTREEPPSEEP 788

Query: 2340 XXXXXXXXXXXLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNK 2510
                       + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++F++A + K
Sbjct: 789  TTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKK 848

Query: 2511 KWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYS 2690
             W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYS
Sbjct: 849  TWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYS 908

Query: 2691 QRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            QR GIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSA
Sbjct: 909  QRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 950


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score = 1260 bits (3260), Expect = 0.0
 Identities = 624/942 (66%), Positives = 735/942 (78%), Gaps = 5/942 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76   GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  +A+Q+L  ++   +N +++                              
Sbjct: 196  AYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTN 255

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS V+CYNC KFGHYA +C+ P N +  E+A+ VEE
Sbjct: 256  ----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAHYVEE 311

Query: 900  KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKV 1079
            K ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+
Sbjct: 312  KIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKM 371

Query: 1080 AVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMN 1259
             VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +
Sbjct: 372  EVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQES 431

Query: 1260 NLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRG 1439
            NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL +K MVRG
Sbjct: 432  NLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRG 491

Query: 1440 LPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLL 1619
            LPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLL
Sbjct: 492  LPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLL 551

Query: 1620 FIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCE 1799
            FIDDFSRKTWVYFLK+KS                SGL IK MR+DRGGEFTSKEF ++CE
Sbjct: 552  FIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCE 611

Query: 1800 ANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSP 1979
             NGIRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSP
Sbjct: 612  DNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP 671

Query: 1980 TRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKG 2159
            T+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKG
Sbjct: 672  TKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKG 731

Query: 2160 YKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXX 2339
            YKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE    E + EEP     
Sbjct: 732  YKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP---EPTREEPPSEEP 788

Query: 2340 XXXXXXXXXXXLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNK 2510
                       + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++F++A + K
Sbjct: 789  TTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKK 848

Query: 2511 KWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYS 2690
             W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYS
Sbjct: 849  TWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYS 908

Query: 2691 QRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            QR GIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSA
Sbjct: 909  QRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 950


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score = 1258 bits (3254), Expect = 0.0
 Identities = 622/942 (66%), Positives = 734/942 (77%), Gaps = 5/942 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76   GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+L  ++   +N +++                              
Sbjct: 196  AYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTN 255

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEE
Sbjct: 256  ----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFKEKANYVEE 311

Query: 900  KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKV 1079
            K ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+
Sbjct: 312  KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKM 371

Query: 1080 AVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMN 1259
             VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +
Sbjct: 372  EVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKES 431

Query: 1260 NLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRG 1439
            NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL +K MVRG
Sbjct: 432  NLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRG 491

Query: 1440 LPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLL 1619
            LPCI+HP+Q+CEGCLLG QF+ SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLL
Sbjct: 492  LPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLL 551

Query: 1620 FIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCE 1799
            FIDDFSRKTWVYFLK+KS                SGL IK MR+D GGEFTSKEF ++CE
Sbjct: 552  FIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCE 611

Query: 1800 ANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSP 1979
             NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSP
Sbjct: 612  DNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP 671

Query: 1980 TRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKG 2159
            T+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+R+KLDDKSEK+IFIGYDNNSKG
Sbjct: 672  TKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKG 731

Query: 2160 YKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXX 2339
            YKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+D+    E + EEP     
Sbjct: 732  YKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKP---EPTREEPPSEEP 788

Query: 2340 XXXXXXXXXXXLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNK 2510
                       + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++F+EA + K
Sbjct: 789  TTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKK 848

Query: 2511 KWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYS 2690
             W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYS
Sbjct: 849  TWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYS 908

Query: 2691 QRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            QRAGIDYDE+FAPVARLET+RLIISLAAQNKWKIHQMDVKSA
Sbjct: 909  QRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 950


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 1254 bits (3246), Expect = 0.0
 Identities = 623/942 (66%), Positives = 732/942 (77%), Gaps = 5/942 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76   GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+L  ++   +N +++                              
Sbjct: 196  AYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTN 255

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEE
Sbjct: 256  ----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEE 311

Query: 900  KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKV 1079
            K ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+
Sbjct: 312  KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKM 371

Query: 1080 AVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMN 1259
             VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +
Sbjct: 372  EVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQES 431

Query: 1260 NLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRG 1439
            NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL +K MVRG
Sbjct: 432  NLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRG 491

Query: 1440 LPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLL 1619
            LPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QK LELIH DVCGPIKP S GKSNYFLL
Sbjct: 492  LPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLL 551

Query: 1620 FIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCE 1799
            FIDDFSRKTWVYFLK+KS                SGL IK MR+DRGGEFTSKEF ++CE
Sbjct: 552  FIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCE 611

Query: 1800 ANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSP 1979
             NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSP
Sbjct: 612  DNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP 671

Query: 1980 TRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKG 2159
            T+SV GKTPQEAW+GRK G+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKG
Sbjct: 672  TKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKG 731

Query: 2160 YKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXX 2339
            YKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE    E + EEP     
Sbjct: 732  YKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP---EPTREEPPSEEP 788

Query: 2340 XXXXXXXXXXXLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNK 2510
                       + E + ERT   RS++ELYEVT+  ENLTLFCLFA+CEP++F+EA + K
Sbjct: 789  TTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKK 848

Query: 2511 KWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYS 2690
             W +AMDEEIKSI+KNDTWEL  LP GHK IGVKWVYK KKN+KGEVERYKARLVAKGY 
Sbjct: 849  TWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYI 908

Query: 2691 QRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            QRAGIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSA
Sbjct: 909  QRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 950


>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1254 bits (3244), Expect = 0.0
 Identities = 635/940 (67%), Positives = 731/940 (77%), Gaps = 3/940 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +             AL LIYQ
Sbjct: 16   SNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVSDYF
Sbjct: 76   GLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLGSLQ 195

Query: 546  AHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+ K  V   K EEN H                             
Sbjct: 196  AYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQGRRPNNNN 254

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 899
                 +                YDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 255  ----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 310

Query: 900  K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1076
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 311  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 368

Query: 1077 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1256
            VAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 369  VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 428

Query: 1257 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVR 1436
            +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLELL KK MVR
Sbjct: 429  SRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVR 488

Query: 1437 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1616
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 489  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 548

Query: 1617 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFC 1796
            LFIDDFSRKTWVYFLK+KS                SGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 549  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 608

Query: 1797 EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 1976
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 609  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 668

Query: 1977 PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 2156
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 669  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 728

Query: 2157 GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 2336
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 729  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 788

Query: 2337 XXXXXXXXXXXXLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 2516
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 789  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 847

Query: 2517 GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 2696
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 848  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 907

Query: 2697 AGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            AGIDYDEVFAPVARLET+RLIISLAAQN WKIHQMDVKSA
Sbjct: 908  AGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSA 947


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1254 bits (3244), Expect = 0.0
 Identities = 635/940 (67%), Positives = 731/940 (77%), Gaps = 3/940 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +             AL LIYQ
Sbjct: 16   SNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVSDYF
Sbjct: 76   GLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLGSLQ 195

Query: 546  AHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+ K  V   K EEN H                             
Sbjct: 196  AYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQGRRPNNNN 254

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 899
                 +                YDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 255  ----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 310

Query: 900  K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1076
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 311  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 368

Query: 1077 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1256
            VAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 369  VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 428

Query: 1257 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVR 1436
            +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLELL KK MVR
Sbjct: 429  SRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVR 488

Query: 1437 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1616
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 489  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 548

Query: 1617 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFC 1796
            LFIDDFSRKTWVYFLK+KS                SGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 549  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 608

Query: 1797 EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 1976
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 609  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 668

Query: 1977 PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 2156
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 669  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 728

Query: 2157 GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 2336
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 729  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 788

Query: 2337 XXXXXXXXXXXXLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 2516
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 789  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 847

Query: 2517 GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 2696
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 848  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 907

Query: 2697 AGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            AGIDYDEVFAPVARLET+RLIISLAAQN WKIHQMDVKSA
Sbjct: 908  AGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSA 947


>ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 961

 Score = 1249 bits (3233), Expect = 0.0
 Identities = 627/943 (66%), Positives = 736/943 (78%), Gaps = 6/943 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76   GLDEDTFEKVIEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDPKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+LK  +   +N +N+                              
Sbjct: 196  AYEEKKKKKEDIVEQVLKMRITKEENGQNYQRRGGGQVRGRGRGYGNGRGWRPYEDNTN- 254

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS V+CYNC KFGHYA +C+ P N +V E+AN VEE
Sbjct: 255  ----QRGENSSRGRGRGSPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKVEEKANYVEE 310

Query: 900  KKEDGANVLLLARNDNGEGQDD-TWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1076
            + ++  ++LL+A    GE +++  WYLD+GASNHMCG ++MFVELDESV GNV+ GD+SK
Sbjct: 311  QVQE-EDMLLMASYKKGEHEENHKWYLDSGASNHMCGSKSMFVELDESVRGNVALGDESK 369

Query: 1077 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1256
            + VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  
Sbjct: 370  MEVKGKGKILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQE 429

Query: 1257 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVR 1436
            +NLI +V MS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGL+LL KK MVR
Sbjct: 430  SNLITKVSMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLKLLSKKEMVR 489

Query: 1437 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1616
            GLPCI+HP+Q+CEGCLLGKQF+ SFPKES++R+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 490  GLPCINHPNQVCEGCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFL 549

Query: 1617 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFC 1796
            LFIDDFSRKTWVYFLK+KS                SGL IK+MR+DRGGEFTSKEF ++C
Sbjct: 550  LFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYC 609

Query: 1797 EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 1976
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVA AVYL NRS
Sbjct: 610  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRS 669

Query: 1977 PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 2156
            PT+S+ GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSK
Sbjct: 670  PTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSK 729

Query: 2157 GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 2336
            GYKLYNP   K I SR+V+FDEE EWDW ++  DYNF P FE+D+    E + +EP    
Sbjct: 730  GYKLYNPDTKKTIISRNVVFDEEEEWDWKSNEDDYNFFPHFEEDDS---ELTRDEPPREE 786

Query: 2337 XXXXXXXXXXXXLVERNEERT---RSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQN 2507
                          E + ERT   RSL+ELYEVT+  +NLTLFCLFA+CEP++F+EA + 
Sbjct: 787  PTTPPTSPTSSQGEESSSERTLHFRSLQELYEVTENQDNLTLFCLFAECEPMDFQEAIEK 846

Query: 2508 KKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGY 2687
            K W +AMDEEIK+IKKNDTWELA LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGY
Sbjct: 847  KTWRNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGY 906

Query: 2688 SQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            SQRA IDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSA
Sbjct: 907  SQRARIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 949


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score = 1248 bits (3230), Expect = 0.0
 Identities = 631/940 (67%), Positives = 729/940 (77%), Gaps = 3/940 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +             AL LIYQ
Sbjct: 5    SNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQ 64

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVSDYF
Sbjct: 65   GLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVSDYF 124

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLGSLQ
Sbjct: 125  SRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLGSLQ 184

Query: 546  AHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+ K  V   K EEN H                             
Sbjct: 185  AYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQGRRPNNNN 243

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEE 899
                 +                YDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE
Sbjct: 244  ----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEE 299

Query: 900  K-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1076
            + +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SK
Sbjct: 300  RCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 357

Query: 1077 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1256
            VAV+GKG +LI+LK+G HQFISN+YYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN 
Sbjct: 358  VAVEGKGNVLIQLKNGEHQFISNIYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 417

Query: 1257 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVR 1436
            +  I +VPM RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GL+LL KK MVR
Sbjct: 418  SRFITKVPMMRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLDLLSKKAMVR 477

Query: 1437 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1616
            GLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 478  GLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFL 537

Query: 1617 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFC 1796
            LFIDDFSRKTWVYFLK+KS                SGL IKA+R+DRGGEFTSKEFQ++C
Sbjct: 538  LFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYC 597

Query: 1797 EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 1976
            E NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRS
Sbjct: 598  EDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRS 657

Query: 1977 PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 2156
            PTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSK
Sbjct: 658  PTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSK 717

Query: 2157 GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 2336
            GYKLYNP + K I SR+V+FDEEGEWDW T+ +D+ F P  E+D+    +Q  E P    
Sbjct: 718  GYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPP 777

Query: 2337 XXXXXXXXXXXXLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKW 2516
                          ER   R RSL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W
Sbjct: 778  TSPNTTLQDYESSSER-MPRFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSW 836

Query: 2517 GDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQR 2696
             +AMDEEI++IKKNDTWEL  LPK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQR
Sbjct: 837  RNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQR 896

Query: 2697 AGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            AGIDYDEVFAPVARLET+RLIISLAAQN WKIHQMDVKSA
Sbjct: 897  AGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSA 936


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
 gb|AAG50765.1|AC079131_10 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score = 1211 bits (3134), Expect = 0.0
 Identities = 608/939 (64%), Positives = 716/939 (76%), Gaps = 2/939 (0%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76   GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EEKKKKK  + +Q+L  ++   +N +++                              
Sbjct: 196  AYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTN 255

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS V+CYNC KFGHYA +C+ P N +  E+AN VEE
Sbjct: 256  ----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEE 311

Query: 900  KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKV 1079
            K ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV+ GD+SK+
Sbjct: 312  KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKM 371

Query: 1080 AVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMN 1259
             VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNNLSIRD  +
Sbjct: 372  EVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQES 431

Query: 1260 NLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRG 1439
            NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL +K MVRG
Sbjct: 432  NLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRG 491

Query: 1440 LPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLL 1619
            LPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLL
Sbjct: 492  LPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLL 551

Query: 1620 FIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCE 1799
            FIDDFSRKTWVYFLK+KS                SGL IK MR+DRGGEFTSKEF ++CE
Sbjct: 552  FIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCE 611

Query: 1800 ANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSP 1979
             NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACAVYL NRSP
Sbjct: 612  DNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSP 671

Query: 1980 TRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKG 2159
            T+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFIGYDNNSKG
Sbjct: 672  TKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKG 731

Query: 2160 YKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXX 2339
            YKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+D+    E + EEP     
Sbjct: 732  YKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKP---EPTREEP----- 783

Query: 2340 XXXXXXXXXXXLVERNEERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWG 2519
                           +EE T         + ++E          CEP++F+EA + K W 
Sbjct: 784  --------------PSEEPT--TPPTSPTSSQIEE--------KCEPMDFQEAIEKKTWR 819

Query: 2520 DAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRA 2699
            +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEVERYKARLVAKGYSQRA
Sbjct: 820  NAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRA 879

Query: 2700 GIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            GIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMDVKSA
Sbjct: 880  GIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 918


>gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1033

 Score = 1025 bits (2651), Expect = 0.0
 Identities = 502/678 (74%), Positives = 568/678 (83%), Gaps = 2/678 (0%)
 Frame = +3

Query: 789  YDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEEK-KEDGANVLLLARNDNGEGQD 962
            YDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE+ +EDG   LLLA     +G+D
Sbjct: 207  YDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEERCQEDGT--LLLAYKGQDKGED 264

Query: 963  DTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1142
            + WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SKVAV+GKG +LIRLK+G HQFIS
Sbjct: 265  NQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFIS 324

Query: 1143 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 1322
            NVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN +  IA+VPM+RNRMF+LNIQ+D
Sbjct: 325  NVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSD 384

Query: 1323 VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFR 1502
              +CLKMCYKD SWLWHLRFGHLNF GLELL KK MVRGLPCI+HP+Q+CEGCLLGKQFR
Sbjct: 385  GPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFR 444

Query: 1503 QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 1682
             SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS   
Sbjct: 445  LSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVF 504

Query: 1683 XXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 1862
                         SGL IKA+R+DRGGEFTSKEFQ++CE NGIRR LTVPRSPQQNGVAE
Sbjct: 505  ENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAE 564

Query: 1863 RKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGIS 2042
            RKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRSPTRSV GKTPQEAW+GRKPGIS
Sbjct: 565  RKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGIS 624

Query: 2043 HLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDE 2222
            HLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSKGYKLYNP + K I SR+V+FDE
Sbjct: 625  HLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDE 684

Query: 2223 EGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXXXXXXXXXXXXXXLVERNEERTR 2402
            EGEWDW T+ +D+ F P  E+D+    +Q  E P                  ER   R R
Sbjct: 685  EGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSER-MPRFR 743

Query: 2403 SLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQL 2582
            SL+E+YE T+ L+N+TLFCLFADCEP+NF+EA   K W +AMDEEI++IKKNDTWEL  L
Sbjct: 744  SLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSL 803

Query: 2583 PKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLII 2762
            PK H AIGVKWVYK KK++KGEV+RYKARLVAKGYSQRAGIDYDEVFAPVARLET+RLII
Sbjct: 804  PKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLII 863

Query: 2763 SLAAQNKWKIHQMDVKSA 2816
            SLAAQN WKIHQMDVKSA
Sbjct: 864  SLAAQNNWKIHQMDVKSA 881



 Score =  227 bits (579), Expect = 4e-58
 Identities = 114/177 (64%), Positives = 139/177 (78%)
 Frame = +3

Query: 6   NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
           ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +             AL LIYQ
Sbjct: 5   SNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQ 64

Query: 186 ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
            LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVSDYF
Sbjct: 65  GLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVSDYF 124

Query: 366 SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLG 536
           SRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLG
Sbjct: 125 SRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLG 181


>dbj|GAU28864.1| hypothetical protein TSUD_293160 [Trifolium subterraneum]
          Length = 951

 Score = 1017 bits (2630), Expect = 0.0
 Identities = 536/919 (58%), Positives = 637/919 (69%), Gaps = 18/919 (1%)
 Frame = +3

Query: 6    NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
            ++++NWS++M ALLGAHDVWE+VEKG    ++E+TLS T+             AL LIYQ
Sbjct: 16   SNYDNWSLRMMALLGAHDVWEIVEKGLVIPENETTLSQTQKDSLRDSRKRDKKALCLIYQ 75

Query: 186  ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
             LD+D FEK+S A +AK+ W+KLQ SYKG ++VKKVRLQTLR+EF++L MKEGEL+SDYF
Sbjct: 76   GLDEDTFEKVSGAKTAKEAWEKLQTSYKGADQVKKVRLQTLRKEFEALHMKEGELISDYF 135

Query: 366  SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
            SRVL+V+N LKRNGEK +DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136  SRVLSVTNNLKRNGEKYDDVRIMEKVLRSLDPKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546  AHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 722
            A+EE+KKKK  + +QLLKT V   + E                                 
Sbjct: 196  AYEERKKKKEDIEEQLLKTRVDSPREEHG----RSNQRRGDDRGRGRGRGYGGGRGWKPN 251

Query: 723  XXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP-NTRVNERANLVEE 899
                 +                YDKS+V+CYNC+KFGHYA +CR P N +V E+AN VEE
Sbjct: 252  DDNNQRGEISSRGHGRGSPKPRYDKSRVKCYNCEKFGHYASECRAPSNRKVEEKANYVEE 311

Query: 900  -KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSK 1076
              +EDG   LLLA  DN  G D+ WYLD+GASNHMCGRR+MFVELDESV+GNV+FGD+SK
Sbjct: 312  ISQEDGT--LLLAHKDNERGGDNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDESK 369

Query: 1077 VAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNM 1256
            VAVKGKG +LIRLK+G HQFISNVYYVP MK+NILSLGQLLEKGYDI LK+NNLSIRD+ 
Sbjct: 370  VAVKGKGNVLIRLKNGDHQFISNVYYVPNMKSNILSLGQLLEKGYDIQLKNNNLSIRDHS 429

Query: 1257 NNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVR 1436
            N  IA+V MSRNRMF+LNIQ DVA+CLKMCYK+  WLWHLRFGHLNFGGLELL KK MVR
Sbjct: 430  NKFIAKVTMSRNRMFVLNIQNDVAQCLKMCYKEEPWLWHLRFGHLNFGGLELLSKKEMVR 489

Query: 1437 GLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFL 1616
            GLP I+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL
Sbjct: 490  GLPYINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHMDVCGPIKPRSLGKSNYFL 549

Query: 1617 LFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFC 1796
            LFID+FSRKTWVYFLK+KS                SG  IKA+R+DRGGEFTS +F ++C
Sbjct: 550  LFIDNFSRKTWVYFLKEKSEVFENFKKFKALVEKESGRVIKAIRSDRGGEFTSNDFLKYC 609

Query: 1797 EANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRS 1976
            E N IRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACAVYLSNRS
Sbjct: 610  EDNDIRRQLTVPRSPQQNGVTERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLSNRS 669

Query: 1977 PTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSK 2156
            PTR                                 +E+RSKLDDKSEK+IFIGYD NSK
Sbjct: 670  PTR---------------------------------NEKRSKLDDKSEKYIFIGYDGNSK 696

Query: 2157 GYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEEPIXXX 2336
            G+KL NP  GK I SR+V+FDEEGEW+W +  +D NF  EFE++    V+Q    P    
Sbjct: 697  GFKLLNPNMGKTIISRNVVFDEEGEWNWRSSNEDCNFFLEFEEEASREVQQVPSSPTSPA 756

Query: 2337 XXXXXXXXXXXXLVERNEERTRSLEELYEVTD---------------KLENLTLFCLFAD 2471
                          ER   RTRSL +LYE T+               +++N TL CL A+
Sbjct: 757  SEDTGS--------ERIVTRTRSLHDLYENTEALSPRRLGDLYEETREMDNPTLLCLSAN 808

Query: 2472 CEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEV 2651
             E  N EE   +K+W DAMD+EIK+I+KNDTW+   LPK  K IGVK   K KKN   ++
Sbjct: 809  YESGNSEEVAPDKRWRDAMDKEIKTIEKNDTWKFISLPKDRKTIGVKKFCKAKKNDNEKI 868

Query: 2652 ERYKARLVAKGYSQRAGID 2708
            + Y+ +LV KGY Q+   D
Sbjct: 869  KIYQTKLVTKGYKQKGKND 887


>gb|KZV47435.1| hypothetical protein F511_22511, partial [Dorcoceras hygrometricum]
          Length = 881

 Score =  933 bits (2412), Expect = 0.0
 Identities = 490/885 (55%), Positives = 605/885 (68%), Gaps = 15/885 (1%)
 Frame = +3

Query: 165  ALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEG 344
            AL LI+Q+LD+  FEK++SAT++KQ WD LQ S++G +KVKKVRLQTLR EF+SL+  E 
Sbjct: 7    ALTLIHQSLDEKMFEKVASATTSKQAWDVLQASFQGVDKVKKVRLQTLRGEFESLRKTES 66

Query: 345  ELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIE 524
            E V DY SRVL V+NQ+KR GE L+D  I+ K LRSLD+ FD I   I+E+KDL+TMT++
Sbjct: 67   ESVLDYISRVLVVANQMKRYGEDLKDDRIVGKFLRSLDSKFDYIVVAIQESKDLDTMTVD 126

Query: 525  QLLGSLQAHEE-KKKKKGVADQLLKTEV----QPTKNEENFHXXXXXXXXXXXXXXXXXX 689
            +L GSLQAHEE  KK     +Q LK ++    + TKN  +                    
Sbjct: 127  ELSGSLQAHEEILKKPHESVEQALKAKLTLKEKETKNGTSQRGRGRGGGRNQGQGIGRGG 186

Query: 690  XXXXXXXXXXXXXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPNTR 869
                            Q                  +   Q Y+      Y  +C      
Sbjct: 187  YGRGRCDNNFHNNESSQNFNQGRSRGRGKRPRGGGRQTQQRYDKSNVECY--NCHKFGHY 244

Query: 870  VNERANLVEEKKEDGAN-------VLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVE 1028
              E  N VEE      N        LLLA     E  +D WYLD+GAS+H+CG + +FVE
Sbjct: 245  SYECRNNVEETNNFAKNSIEEVNPTLLLACKTTQEKDNDKWYLDSGASSHICGNKDLFVE 304

Query: 1029 LDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKG 1208
            LDES+ G ++FGD S+V V+G+GTIL R K+G HQ ISNVYYVP MK+N+LSLGQLLEK 
Sbjct: 305  LDESIGGKITFGDSSQVQVQGRGTILFRSKNGSHQLISNVYYVPDMKSNVLSLGQLLEKN 364

Query: 1209 YDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGH 1388
            Y+I LKD +L+++D    LI  VPM++NRM LLNIQ+DV  CLK  +KDSSWLWH+R GH
Sbjct: 365  YEISLKDKSLTMKDESGRLI-EVPMTKNRMLLLNIQSDVPMCLKSFFKDSSWLWHMRLGH 423

Query: 1389 LNFGGLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADV 1568
            LNF  L+L+ K+ MV+GLP I HP+QLCEGC+LGKQ R+SF K+S +R+Q PLELIH+DV
Sbjct: 424  LNFDSLKLMSKRKMVKGLPSIDHPNQLCEGCILGKQARKSFSKKSMTRAQHPLELIHSDV 483

Query: 1569 CGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMR 1748
            CGPIKP+S GKSNYF++FIDDFSRKTWVYF+K+KS                SG  I+A+R
Sbjct: 484  CGPIKPSSLGKSNYFIIFIDDFSRKTWVYFIKEKSEVFETFKKFKIMVEKQSGYQIQALR 543

Query: 1749 TDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKE 1928
            +DRGGEFTS EF++FCE NGI RP+T P SPQQNGV+ERKNRTILNMVRSMLK K MPKE
Sbjct: 544  SDRGGEFTSNEFKKFCEDNGIHRPMTTPYSPQQNGVSERKNRTILNMVRSMLKRKNMPKE 603

Query: 1929 FWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLD 2108
            FWAEAV CAVYL+NR  T+SV GKTP E  +G KP ++HLRVFGSIA+ HVPDE+R+KLD
Sbjct: 604  FWAEAVTCAVYLTNRWHTKSVNGKTPNEDCSGYKPNVAHLRVFGSIAYAHVPDEKRTKLD 663

Query: 2109 DKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDD 2288
            DKS +++FIGYD NSK YKLYNP NGKII SRDV FDEE  WDW    + Y++ P F+D 
Sbjct: 664  DKSARYVFIGYDTNSKCYKLYNPNNGKIILSRDVEFDEESAWDWNVSNETYSYSPFFDDQ 723

Query: 2289 EQVIVEQSGEEPIXXXXXXXXXXXXXXXLVERNEERTRSLEELYEVTDKLENL---TLFC 2459
            E+     +   P                       R RSL ELY+ T++++NL   T FC
Sbjct: 724  EEESTHPTTPPPSPPPQDDQDGS-------SSQPRRFRSLRELYKTTEEVQNLSEFTQFC 776

Query: 2460 LFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNA 2639
            L A+ EPV+FE+A  ++KW  AMD EIK+I+KNDTWELA LPKG  +IGVKW+YK+K+NA
Sbjct: 777  LLAETEPVSFEDAVYDEKWKHAMDGEIKAIRKNDTWELASLPKGKSSIGVKWMYKIKRNA 836

Query: 2640 KGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAA 2774
            KGE+E+YKARLVAKGY Q+ GIDYDEVFAPVARLETIRLIISLAA
Sbjct: 837  KGEIEKYKARLVAKGYKQKVGIDYDEVFAPVARLETIRLIISLAA 881


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  931 bits (2406), Expect = 0.0
 Identities = 458/655 (69%), Positives = 529/655 (80%), Gaps = 3/655 (0%)
 Frame = +3

Query: 861  NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDES 1040
            N +  E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDES
Sbjct: 261  NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDES 320

Query: 1041 VSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIH 1220
            V GNV+ GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI 
Sbjct: 321  VRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIR 380

Query: 1221 LKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFG 1400
            LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFG
Sbjct: 381  LKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 440

Query: 1401 GLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPI 1580
            GLELL +K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPI
Sbjct: 441  GLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 500

Query: 1581 KPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRG 1760
            KP S  KS  F +F     +K   +  K+                  SGL IK MR+DRG
Sbjct: 501  KPKSLEKSEVFKIF-----KKFKAHVEKE------------------SGLVIKTMRSDRG 537

Query: 1761 GEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAE 1940
            GEFTSKEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAE
Sbjct: 538  GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 597

Query: 1941 AVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSE 2120
            AVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSE
Sbjct: 598  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 657

Query: 2121 KFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVI 2300
            K+IFIGYDNNSKGYKLYNP   K I SR+++FDEEGEWDW ++ +DYNF P FE+DE   
Sbjct: 658  KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEP-- 715

Query: 2301 VEQSGEEPIXXXXXXXXXXXXXXXLVERNEERT---RSLEELYEVTDKLENLTLFCLFAD 2471
             E + EEP                + E + ERT   RS++ELYEVT+  ENLTLFCLFA+
Sbjct: 716  -EPTREEPPSEEPTTRPTSLTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAE 774

Query: 2472 CEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEV 2651
            CEP++F+EA + K W +AMDEEIKSI+KNDTWEL  LP GHKAIGVKWVYK KKN+KGEV
Sbjct: 775  CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 834

Query: 2652 ERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            ERYKARLVAKGYSQRAGIDYDEVFAPVARLET+RLIISLAAQNKWKIHQMD K A
Sbjct: 835  ERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDFKLA 889



 Score =  263 bits (673), Expect = 1e-69
 Identities = 131/210 (62%), Positives = 167/210 (79%), Gaps = 1/210 (0%)
 Frame = +3

Query: 6   NDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQ 185
           ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+             AL LIYQ
Sbjct: 16  SNYDNWSLQMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 186 ALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYF 365
            LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKEGELVSDYF
Sbjct: 76  GLDEDTFEKVVEATSAKEAWEKLRTSYKGVDQVKKVRLQTLRGEFEALQMKEGELVSDYF 135

Query: 366 SRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQ 545
           SRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTIEQLLGSLQ
Sbjct: 136 SRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQ 195

Query: 546 AHEEKKKKK-GVADQLLKTEVQPTKNEENF 632
           A+EEKKKKK  + +Q+L   +   +N +++
Sbjct: 196 AYEEKKKKKEDIVEQVLNMRITKEENGQSY 225


>dbj|GAU34810.1| hypothetical protein TSUD_394360 [Trifolium subterraneum]
          Length = 749

 Score =  895 bits (2313), Expect = 0.0
 Identities = 474/784 (60%), Positives = 550/784 (70%), Gaps = 10/784 (1%)
 Frame = +3

Query: 333  MKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLET 512
            MKEGEL+SD+FSRVLTV+N LKRNGEK +DV IMEK+LRSLD  F+ I T+IEETKDLE 
Sbjct: 1    MKEGELISDHFSRVLTVTNNLKRNGEKYDDVRIMEKVLRSLDPKFEHIITVIEETKDLEA 60

Query: 513  MTIEQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXX 689
            MTIEQ+LGSLQA+EE+KKKK  + +Q+LKT V   + E                      
Sbjct: 61   MTIEQILGSLQAYEERKKKKEDIEEQVLKTRVDSPREEHG----RSCQRRGDDRGRGRGR 116

Query: 690  XXXXXXXXXXXXXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPNTR 869
                            +                YDKS+V+CYNC+ FGHYA + R  + R
Sbjct: 117  GYGGGRGWRPNDDNNQRGEISSRGHGRGSPKPRYDKSRVKCYNCENFGHYASEYRAHSIR 176

Query: 870  -VNERANLVEE-KKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESV 1043
             V E+AN VEE  +EDG   LLLA  DN +G D+ WYLD+GASNHMCGRR+MFVELDESV
Sbjct: 177  KVEEKANYVEEISQEDGT--LLLAHKDNEKGGDNQWYLDSGASNHMCGRRSMFVELDESV 234

Query: 1044 SGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHL 1223
            + NV+FGD+SKVAVKGKG +LIRLK+G HQFISNVYYVP MK+NILSLGQLLEKGYDI L
Sbjct: 235  NENVAFGDESKVAVKGKGNVLIRLKNGDHQFISNVYYVPNMKSNILSLGQLLEKGYDIQL 294

Query: 1224 KDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGG 1403
             +NNLSIRD+ N  IA+VPMSRNRMF+LNIQ DVA+CLKMCYK+ SWLWHLRFGHLNFGG
Sbjct: 295  TNNNLSIRDHSNKFIAKVPMSRNRMFVLNIQKDVAQCLKMCYKEVSWLWHLRFGHLNFGG 354

Query: 1404 LELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIK 1583
            LEL+ KK MVRGLP I+HP+Q+CEGCLLGKQF+ SFP ES+SR+QK L+LIH DVCGPIK
Sbjct: 355  LELVSKKEMVRGLPYINHPNQVCEGCLLGKQFKMSFPNESSSRAQKSLKLIHTDVCGPIK 414

Query: 1584 PNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGG 1763
            P S GKSNYFLLF+DDFSRKTWVYFLK+KS                              
Sbjct: 415  PRSLGKSNYFLLFVDDFSRKTWVYFLKEKSEVFE-------------------------- 448

Query: 1764 EFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEA 1943
                K+F+   E    R  LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WA+A
Sbjct: 449  --NFKKFKALVEKESGR--LTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAKA 504

Query: 1944 VACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEK 2123
            VACAVYLSN SPTRSV GKTPQEAW+GRKPGI HLRVFGSIAH HVP E+RSKLDDKSEK
Sbjct: 505  VACAVYLSNCSPTRSVLGKTPQEAWSGRKPGICHLRVFGSIAHAHVPAEKRSKLDDKSEK 564

Query: 2124 FIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIV 2303
            +IFIGYD NSKGYKLYNP  GK I SR+V+FDEEGEWDW +  +D NF PEFE++    V
Sbjct: 565  YIFIGYDGNSKGYKLYNPDTGKTIISRNVVFDEEGEWDWRSSNEDCNFFPEFEEEASREV 624

Query: 2304 EQSGEEPI------XXXXXXXXXXXXXXXLVERNEE-RTRSLEELYEVTDKLENLTLFCL 2462
            +Q    P                      L E  E    R LE+LYE T ++ N TL CL
Sbjct: 625  QQVPNSPTSPTSEDTGSERIVTCTRSLHDLYENTEALAPRRLEDLYEETREMNNPTLLCL 684

Query: 2463 FADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAK 2642
             A+ E  N EE   +K+W DAMD+EIK+I+KNDTW+   LPK  K IGVK   K KKN  
Sbjct: 685  SANYESGNSEEVAPDKRWRDAMDKEIKTIEKNDTWKFISLPKDRKTIGVKKFCKAKKNDN 744

Query: 2643 GEVE 2654
            G+++
Sbjct: 745  GKIK 748


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score =  914 bits (2361), Expect = 0.0
 Identities = 459/956 (48%), Positives = 619/956 (64%), Gaps = 20/956 (2%)
 Frame = +3

Query: 9    DFENWSIKMKALLGAHDVWEVVEKGYEETKD---ESTLSSTEXXXXXXXXXXXXXALFLI 179
            ++ NWSI+MKALLG+ D WE+VEKGY E  D   E+ LS+               AL  I
Sbjct: 16   NYGNWSIRMKALLGSQDCWEIVEKGYIEPGDAATEAALSNDAKKALREARKKDQKALNSI 75

Query: 180  YQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSD 359
            +Q +D+  FEKIS   +AK  W+ LQ S++G EK KKVRLQ+LR EF+ L+MK  E + D
Sbjct: 76   FQGMDESTFEKISDVKNAKNAWEILQKSFQGVEKAKKVRLQSLRAEFEMLKMKSSENIDD 135

Query: 360  YFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGS 539
            Y +RV +V N++KRNGE L++V +MEKILRSL   F+ +   IEE+KDL  M++E+L+GS
Sbjct: 136  YANRVKSVVNEMKRNGETLDEVRVMEKILRSLTRKFEYVVVAIEESKDLSKMSLEELVGS 195

Query: 540  LQAHEEKKKKKGVADQL-----LKTEVQPTKNEENF-------HXXXXXXXXXXXXXXXX 683
            LQAHE+K K    ++ L      K  +   +   NF                        
Sbjct: 196  LQAHEQKMKLNEDSENLNQALHSKLSIDDGETSNNFSQGRGNRRGYRGGYRGGNRGGRGS 255

Query: 684  XXXXXXXXXXXXXXXXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPN 863
                            Y                   +KSQVQCYNC K+GH++ +CR+ +
Sbjct: 256  RGRGNQSYGRYQENKDYQTSNRGRGSRGRGRGRFQENKSQVQCYNCNKYGHFSYECRSTH 315

Query: 864  TRVNERANLV--EEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDE 1037
             +V+ER ++    E  E   + + L   +N + +   WYLD GASNHMCGR+ +F ELDE
Sbjct: 316  -KVDERNHVAVAAEGNEKVESSVFLTYGENEDRKRSVWYLDNGASNHMCGRKELFTELDE 374

Query: 1038 SVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDI 1217
            +V G ++FGD+S   +KGKG ++I  ++G  ++IS+VYYVP +K+N++SLGQLLEKGY++
Sbjct: 375  TVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISDVYYVPALKSNLISLGQLLEKGYEV 434

Query: 1218 HLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNF 1397
            H+KD +L+IR+    L+ RV M+RNR+F L+I++   KC+K   K+ SWLWHLR+GHL F
Sbjct: 435  HMKDRSLAIRNKSGELVVRVDMTRNRLFTLDIESGEVKCMKTDLKNESWLWHLRYGHLGF 494

Query: 1398 GGLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGP 1577
             GL+LL K NMV GLP I+HPDQLCE C+ GKQ RQ F    + R+++PLE++H D+ GP
Sbjct: 495  SGLKLLSKTNMVNGLPSINHPDQLCEACVKGKQHRQKFEVGKSRRARRPLEIVHTDISGP 554

Query: 1578 IKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDR 1757
                S G + Y+L FIDD+SRK WVYFLK KS                SG ++K +R+DR
Sbjct: 555  YDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFKAMVEKQSGRYLKILRSDR 614

Query: 1758 GGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWA 1937
            GGE+T+K ++ FC+ +GI   LT  R+PQQNGVAERKNRTIL+M RSM+K K +P+ FWA
Sbjct: 615  GGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKHLPRTFWA 674

Query: 1938 EAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKS 2117
            EAV CAVYL N+ PT+SV  KTP+EAW+G KP + HL++FG IA+ HVP++QR KLDD+ 
Sbjct: 675  EAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQQRKKLDDRG 734

Query: 2118 EKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQV 2297
            EK IFIGYD  SK Y+LYNP+  K+I SRDV FDE   W W    K    +  F +D+  
Sbjct: 735  EKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADYWRWSEEEKKVEGL-FFNEDDNN 793

Query: 2298 IVEQSGEEPIXXXXXXXXXXXXXXXLVERNEERTRSLEELYEVTDKLE---NLTLFCLFA 2468
              EQ  ++                  ++    RTRSL ++Y  T+ +E   + +LFCL  
Sbjct: 794  QEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRSLNDIYNSTEPVETQFDYSLFCLMT 853

Query: 2469 DCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGE 2648
            +C+PV +EEA +N KW  AMDEEI +I++NDTWEL  LP+GH  IGVKWVYK K N +G+
Sbjct: 854  ECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELTSLPEGHSPIGVKWVYKTKTNKEGK 913

Query: 2649 VERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            VE+YKARLVAKGY QR G+DYDE+FAPVAR++TIRL+I++AAQ KWKI+QMDVKSA
Sbjct: 914  VEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLLIAVAAQYKWKIYQMDVKSA 969


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  890 bits (2299), Expect = 0.0
 Identities = 456/954 (47%), Positives = 616/954 (64%), Gaps = 19/954 (1%)
 Frame = +3

Query: 12   FENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQAL 191
            ++NWSI+MKALLG+ D WEVVE+G+EE  + +  ++ +             AL+++Y+A+
Sbjct: 19   YDNWSIQMKALLGSQDSWEVVEEGFEEPTNTTGYTAAQTKALKEMRSKDKAALYMLYRAV 78

Query: 192  DDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYFSR 371
            D+  FEKI+ A+++K+ WD L+  +KG ++VK+VRLQTLR E ++++M E E VSDY +R
Sbjct: 79   DEAIFEKIAGASTSKEAWDILEKVFKGADRVKQVRLQTLRGELENMKMMESESVSDYITR 138

Query: 372  VLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQAH 551
            V  V NQL RNGE L D  ++EKILR+L  NF+SI   IEE+KDL T+T+++L GSL+AH
Sbjct: 139  VQAVVNQLNRNGETLTDARVVEKILRTLTDNFESIVCAIEESKDLATLTVDELAGSLEAH 198

Query: 552  EEKKKKKG--VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 725
            E++KKKK     +Q L+T+      +  +H                              
Sbjct: 199  EQRKKKKKEETLEQALQTKASIKDEKVLYHQNSQYRGRGRGSRGNGRGGKGSNHEGYYKE 258

Query: 726  XXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNP--------------- 860
                                  + S ++CY C K+GHYA+DC +                
Sbjct: 259  KEQSSQPNWRGRGRGRGRGGRSNYSNIECYKCHKYGHYAKDCNSDKCYNCGKVGHFAKDC 318

Query: 861  --NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELD 1034
              + ++ E  NL  E  E    VLL+A+++     D  WYLD+GASNHMCG   +F ++ 
Sbjct: 319  RADIKIEETTNLALEV-ETNEGVLLMAQDEVNINNDTLWYLDSGASNHMCGHEYLFKDMQ 377

Query: 1035 ESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYD 1214
            +   G+VSFGD SKV VKG+GT+    KDG    + +VYYVP +KTNILS+GQL EKGY 
Sbjct: 378  KIEDGHVSFGDASKVEVKGRGTVCYLQKDGLIGSLQDVYYVPDLKTNILSMGQLTEKGYS 437

Query: 1215 IHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLN 1394
            I LKD  L +++    L+AR+ M+RNRM+ LN+++   KCL++  +D + LWHLRFGHL+
Sbjct: 438  IFLKDRFLHLKNKQGCLVARIEMARNRMYKLNLRSIREKCLQVNIEDKASLWHLRFGHLH 497

Query: 1395 FGGLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCG 1574
             GGL+ L KKNMV GLP + +  + CE C+L K  R SFPK++   +++PLELIH D+CG
Sbjct: 498  HGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKKAQYWAKQPLELIHTDICG 557

Query: 1575 PIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTD 1754
            PI P SF    YF+ FIDDFSRKTWVYFLK+KS                +   IKA+R+D
Sbjct: 558  PITPESFSGKRYFITFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVERTTDKQIKAVRSD 617

Query: 1755 RGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFW 1934
            RGGE+TS  F E+CE  GIRR LT P +PQQNGVAERKNRTIL+MVRSMLKSKKMPKEFW
Sbjct: 618  RGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERKNRTILDMVRSMLKSKKMPKEFW 677

Query: 1935 AEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDK 2114
            AEAV CA+Y+ NR P   +  +TPQEAW+G+KP +SHL+VFGS+A+ HVPD++R+KL+DK
Sbjct: 678  AEAVQCAIYVQNRCPHVKLDDQTPQEAWSGQKPTVSHLKVFGSVAYAHVPDQRRTKLEDK 737

Query: 2115 SEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQ 2294
            S++++FIGYD  +KGYKL +PI+ K+  SRDV  +E  EWDW              +  +
Sbjct: 738  SKRYVFIGYDEKTKGYKLLDPISKKVTVSRDVQINEASEWDW-------------NNSSE 784

Query: 2295 VIVEQSGEEPIXXXXXXXXXXXXXXXLVERNEERTRSLEELYEVTDKLENLTLFCLFADC 2474
            V++E     P                  E  + + RSL +LY+ T+++    L CL AD 
Sbjct: 785  VMIEVGESSPTSINSETTDDED------EPRQPKIRSLHDLYDSTNEVH---LVCLLADA 835

Query: 2475 EPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVE 2654
            E ++FEEA ++KKW  AMDEEIK+I +N+TWEL +LP+G + IGVKW++K K NA+GE+E
Sbjct: 836  ENISFEEAVRDKKWQTAMDEEIKAIDRNNTWELTELPEGSQPIGVKWIFKKKMNAQGEIE 895

Query: 2655 RYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            RYKARLVAKGY Q+ GIDYDEVFAPV R+ETIRL+IS AAQ KW I QMDVKSA
Sbjct: 896  RYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLLISQAAQFKWPIFQMDVKSA 949


>gb|KYP39674.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  856 bits (2212), Expect = 0.0
 Identities = 448/948 (47%), Positives = 601/948 (63%), Gaps = 12/948 (1%)
 Frame = +3

Query: 9    DFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQA 188
            ++ENWS++MKALL +  +WEVV+KGYEE ++E  L+ T+             AL+ +Y A
Sbjct: 11   NYENWSLQMKALLRSQRLWEVVQKGYEEPEEEEELTVTQLATLEKMQAKDSSALYFLYNA 70

Query: 189  LDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYFS 368
            +D+  FEKI SA ++K+ W+ L+V+++G  +V+++RLQTLR EF++L+M++ E ++++ S
Sbjct: 71   VDELDFEKIGSAANSKEAWETLEVAHRGSSRVRQIRLQTLRGEFENLKMEDREPITEFVS 130

Query: 369  RVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQA 548
            RV  V+NQL R+GE + +  I+EKILRSL+ +FD +   IEE+KDL T+T+E+L GSL+A
Sbjct: 131  RVQKVTNQLMRSGEPVPENRIVEKILRSLNKDFDYVVCAIEESKDLTTLTVEELAGSLKA 190

Query: 549  HEEK-KKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 725
            HE++ KK K   DQ L+  ++ T  +                                  
Sbjct: 191  HEQRIKKGKEPLDQALQARLEFTGGQST-------------------------------- 218

Query: 726  XXYMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKK 905
                Q                 +     CY C K GH A+ C+N  +      NL  E+ 
Sbjct: 219  ----QKGGSRGRGSRGRGGRAKECRTATCYKCGKIGHIAKYCKNDTSE----KNLFSEEG 270

Query: 906  EDGANVLLLARNDNGE---GQDDT-----WYLDTGASNHMCGRRTMFVELDESVSGNVSF 1061
             +   VL+L R+D  E   G +D+     WYLDTGASNHMCG+ ++F +L +  +G+VSF
Sbjct: 271  NEEVGVLMLTRSDECETSRGIEDSPDTSIWYLDTGASNHMCGQESLFSDLVKQEAGSVSF 330

Query: 1062 GDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLS 1241
            GD+SK+AV+G GTI    KDGR   I NV YVP ++TNILS+GQ++EKG  + +KD  L 
Sbjct: 331  GDNSKIAVRGSGTIRHVQKDGRVGEIRNVLYVPKLRTNILSMGQIMEKGNSVLMKDRGLY 390

Query: 1242 IRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCK 1421
            +RD  N LIA   M  NRM+ L +     KCLK+ +KD + +WH RFGHLNFGGL  L K
Sbjct: 391  LRDRNNRLIACEEMKENRMYKLELNILQKKCLKLDHKDEAMIWHYRFGHLNFGGLNELSK 450

Query: 1422 KNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGK 1601
            K +V GLP I    + CE C+LGK  R  FPK +  R+++ L LIH D+CGPI P+SF  
Sbjct: 451  KELVHGLPGIKFEKKFCEECVLGKHHRVGFPKSALYRTEEKLGLIHTDLCGPISPSSFSG 510

Query: 1602 SNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKE 1781
              YF+ FIDD SRKTWVY L++KS                +G  IK +R+DRGGEF S  
Sbjct: 511  KKYFISFIDDLSRKTWVYLLQEKSEAFEVFKRFRLMVEKETGRQIKGIRSDRGGEFISSS 570

Query: 1782 FQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVY 1961
            F E+CE +GIRR LT P SPQQNGVAERKNRTI++MVRSMLK K M ++FWAEAV CAVY
Sbjct: 571  FMEYCEDHGIRRFLTAPYSPQQNGVAERKNRTIMDMVRSMLKGKNMLEKFWAEAVQCAVY 630

Query: 1962 LSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGY 2141
            + NR P   + G TPQEAW+GRKP +SH +VFGSIA+ HVP + R+KLDD+S+K+I IGY
Sbjct: 631  IQNRCPHSKLNGATPQEAWSGRKPSVSHFKVFGSIAYAHVPAQLRTKLDDRSKKYILIGY 690

Query: 2142 DNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGEE 2321
            D  +K YKLYNP+  K++ SRDV  DEEGEW+W   +   +      D ++  + ++G  
Sbjct: 691  DERAKAYKLYNPVTSKMLVSRDVQVDEEGEWNWENRSASSDLGTANSDRDRTEIRRTGSS 750

Query: 2322 PIXXXXXXXXXXXXXXXLVERNE---ERTRSLEELYEVTDKLENLTLFCLFADCEPVNFE 2492
             I               + E +E    RTR+L +LYE T+++    + CL    E + FE
Sbjct: 751  AIRIGSSDNSGGRIHEQIEEEDEAVRPRTRTLHDLYESTNEMH---VICLLIGTEEIKFE 807

Query: 2493 EATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARL 2672
            EA  ++KW  AM+EEI SI+KN TWEL  LP   + IG+KWVYK K NA GEVERYKARL
Sbjct: 808  EAVLDEKWRKAMNEEIVSIEKNGTWELTDLPTETRPIGLKWVYKKKYNADGEVERYKARL 867

Query: 2673 VAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            VAKGY Q+ GIDYDEVFAPV R+E+IRL+IS+AAQN W IHQMDVKSA
Sbjct: 868  VAKGYKQQKGIDYDEVFAPVTRIESIRLLISVAAQNGWTIHQMDVKSA 915


>gb|ACN78973.1| copia-type polyprotein [Glycine max]
 gb|ACN78980.1| copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  796 bits (2055), Expect = 0.0
 Identities = 390/612 (63%), Positives = 471/612 (76%), Gaps = 1/612 (0%)
 Frame = +3

Query: 984  GASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPT 1163
            G     CG +  FVELD+ V GNVSFGD SKV ++GKGTILI LKDG H+ I++VYYVP 
Sbjct: 31   GVEGVTCGCKEKFVELDKKVKGNVSFGDSSKVQIQGKGTILISLKDGAHKLITDVYYVPK 90

Query: 1164 MKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKM 1343
            +K+NILSLGQL+EKGY+IH+KD  L +RD  +NLIA+V MSRNRMF LNI+T+ AKCLK 
Sbjct: 91   LKSNILSLGQLVEKGYEIHMKDCCLWLRDKNSNLIAKVFMSRNRMFTLNIKTNEAKCLKA 150

Query: 1344 CYKDSSWLWHLRFGHLNFGGLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKES 1523
              KD SW WH+RFGHLNFG L+ L ++ MV+G+P I+HP+QLCE CLLGK  R+SFPKE+
Sbjct: 151  SIKDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEA 210

Query: 1524 NSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXX 1703
            NSR+++PL+L++ DVCGPI P S G + YFLLFIDD+SRKTWVYFLKQKS          
Sbjct: 211  NSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFK 270

Query: 1704 XXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTIL 1883
                  SG  IKA+R+DRGGEFTSKEF EFCE  GIRRPLTVPRSPQQNGVAERKNRTIL
Sbjct: 271  ALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERKNRTIL 330

Query: 1884 NMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGS 2063
            NM R MLK+K MPKEFWAEAVACAVYLSNRSPT++V  +TPQEAW+G KP + HLRVFGS
Sbjct: 331  NMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGS 390

Query: 2064 IAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGEWDWG 2243
            IA+ HVPD+ R KLDD+SEK +FIGYD +SKGYKLYNP NGK I SRDV F EEG W+W 
Sbjct: 391  IAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEEGTWNWE 450

Query: 2244 THAKDYNFVPEFED-DEQVIVEQSGEEPIXXXXXXXXXXXXXXXLVERNEERTRSLEELY 2420
                 Y+F P FE+ DE+ +        +                      R R+++ELY
Sbjct: 451  EKEDTYDFFPYFEEIDEEALTPNDSTPALSPTPSTNEASSSSEGSSSERPRRMRNIQELY 510

Query: 2421 EVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKA 2600
            + T+ + +  LFCLF D +P+NF+EA ++K+W  AM+EEIK+I+KN+TWEL+ LPKGH+A
Sbjct: 511  DETEVIND--LFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNTWELSSLPKGHEA 568

Query: 2601 IGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQN 2780
            IGVKWV+K+KKNAKGEVER+KARLVAKGY Q+  +DYDEVFAPVAR+ETIRL+ISLAAQ 
Sbjct: 569  IGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYEVDYDEVFAPVARMETIRLLISLAAQM 628

Query: 2781 KWKIHQMDVKSA 2816
            KW+I Q DVKSA
Sbjct: 629  KWRIFQFDVKSA 640


>gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1270

 Score =  751 bits (1938), Expect = 0.0
 Identities = 406/949 (42%), Positives = 560/949 (59%), Gaps = 14/949 (1%)
 Frame = +3

Query: 12   FENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQAL 191
            +++WS+ M+  + + + W VVE    E       +  +             A   ++QA+
Sbjct: 19   YDHWSMLMENFMRSKEYWCVVENEVREPAAGVAQTEVQQKKLEELKLKDLKAKNYLFQAI 78

Query: 192  DDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYFSR 371
            D D  E I    ++KQ+WD ++  Y+   +VK+ +LQ LR+EF+ L MKEGE V +YFSR
Sbjct: 79   DRDLLETILQKDTSKQIWDAMKQKYQRSTRVKRQQLQALRKEFEVLHMKEGESVDEYFSR 138

Query: 372  VLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQAH 551
             L+++N++  +G KLE+V ++EK+LRS+ + FD +   IEE+K++E M+IE+L  SL  H
Sbjct: 139  TLSIANKMSVHGGKLENVAVVEKVLRSMTSKFDYVVCSIEESKNVEEMSIEELHSSLLVH 198

Query: 552  EEKKKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 731
             E++ K          E Q  K   N+                                 
Sbjct: 199  -EQRMKSNYL------EEQALKVSTNWRNSGRGRG------------------------- 226

Query: 732  YMQXXXXXXXXXXXXXXXXYDKSQVQCYNCQKFGHYARDCRNPNTRVN--ERANLVEEKK 905
            +                  +DKS V+CY C  +GH+  +C + N R    E+AN  E K+
Sbjct: 227  WFLGGRGRGRGGFDGGRGGFDKSNVECYRCHGYGHFKSECTS-NLRYGRGEKANFAE-KE 284

Query: 906  EDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAV 1085
            E    +LL+A ++      D WYLD+G SNHMCG + +F + DE     V  G+D+K+ V
Sbjct: 285  EKEEEILLMAYHEGTN--TDVWYLDSGCSNHMCGNKYLFSDYDEFFKDTVKLGNDAKMTV 342

Query: 1086 KGKGTILIRLKDGRHQF-ISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNN 1262
             GKG I  +LK G H   I +V+YVP +K+N++S+GQL EKGY I ++     I      
Sbjct: 343  VGKGNI--KLKIGGHVVKICDVFYVPDLKSNLISIGQLQEKGYTIIMRKGCCQIMHPEKG 400

Query: 1263 LIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRGL 1442
            LIA+V M+ NRMF L+IQ D+  C  M   D+SWLWH+R+GHLNF GL  L ++++V GL
Sbjct: 401  LIAQVTMTTNRMFPLHIQHDIQTCYTMQMSDASWLWHMRYGHLNFNGLRTLQQRSLVTGL 460

Query: 1443 PCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLF 1622
            P I+   ++CE C++GKQ R  FPK    R++  L+L+H+D+CGPI P S G   YF+ F
Sbjct: 461  PHITCSTRVCEECVIGKQHRDPFPKAGAWRAKTVLQLVHSDICGPIHPVSNGNKRYFITF 520

Query: 1623 IDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCEA 1802
             DDFSRKTWVYF++QKS                SG  IK +RTDRGGE+ S  F  FC +
Sbjct: 521  TDDFSRKTWVYFMEQKSEAFGVFKSFKTLVEKESGKEIKILRTDRGGEYNSSAFMSFCAS 580

Query: 1803 NGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPT 1982
             GIRR LT   SPQQNGV+ERKNRTILNMVRSMLK+  +PKEFW EAV  +V++ NRSPT
Sbjct: 581  YGIRRQLTTAYSPQQNGVSERKNRTILNMVRSMLKTSGIPKEFWPEAVNWSVHVLNRSPT 640

Query: 1983 RSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGY 2162
             +V   TP+EAW+ RKP + H RVFG +A+ HVPDE+R KLDDK  K IF+G    SK Y
Sbjct: 641  VAVKHMTPEEAWSNRKPAVDHFRVFGCVAYSHVPDERRRKLDDKGVKCIFLGVSEESKAY 700

Query: 2163 KLYNPINGKIITSRDVIFDEEGEWDWGTHAKDYNFVPEFEDDEQVIVEQSGE-------- 2318
            +L+NPI  KII SRDV+FDEE  WDW    +    VP   D+ +V  E + E        
Sbjct: 701  RLFNPITKKIIISRDVVFDEESSWDWNGIGQQQ--VPLIADEGRVDSETNHELEAPNESP 758

Query: 2319 EPIXXXXXXXXXXXXXXXLVERNEERTRSLEELYEVTDKL---ENLTLFCLFADCEPVNF 2489
             P+                  + E +  +    YE    L   E +    LF+ C+P+ +
Sbjct: 759  SPVAARSPSEVQPVSPRSPRAQRERKRPAWMMDYESGGDLIDDEAIAHLALFSYCDPITY 818

Query: 2490 EEATQNKKWGDAMDEEIKSIKKNDTWELAQLPKGHKAIGVKWVYKVKKNAKGEVERYKAR 2669
            EEA +  KW +AMD E+ SI+KNDTWEL +LPKG ++IGVKWVYK K    GEV++YKAR
Sbjct: 819  EEAAKETKWREAMDAEMNSIEKNDTWELTKLPKGQQSIGVKWVYKTKLRQDGEVDKYKAR 878

Query: 2670 LVAKGYSQRAGIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSA 2816
            LVAKGY Q+ G+DY EVFAPVA+L+T+R+++ LAAQN W ++Q+DVKSA
Sbjct: 879  LVAKGYKQKFGVDYQEVFAPVAKLDTVRMVLCLAAQNSWPVYQLDVKSA 927


>gb|PNX73691.1| copia-type reverse transcriptase-like protein, partial [Trifolium
            pratense]
          Length = 923

 Score =  725 bits (1871), Expect = 0.0
 Identities = 370/682 (54%), Positives = 475/682 (69%), Gaps = 7/682 (1%)
 Frame = +3

Query: 792  DKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTW 971
            D +  +CYNC K GH A+DC+    +V E  NLV E  E     LL+A+N+     D  W
Sbjct: 260  DCNSYKCYNCGKVGHLAKDCQ-VEKKVEETTNLVLEA-EANEGFLLMAQNEINTNNDTMW 317

Query: 972  YLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVY 1151
            YLD+GASNHMCG + +F E+ +   G+VSFGD SKV V+GKGTI    KDG    I  VY
Sbjct: 318  YLDSGASNHMCGHKHLFKEMQKIEDGHVSFGDASKVKVEGKGTICYLQKDGLIGSIKEVY 377

Query: 1152 YVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAK 1331
            YVP +KTNIL LGQL EKGY I +KD  L ++D + +LIA+V M RNRM+ LN+++   K
Sbjct: 378  YVPDLKTNILXLGQLTEKGYSILIKDRILHLKDKLGHLIAQVEMERNRMYKLNLRSVQEK 437

Query: 1332 CLKMCYKDSSWLWHLRFGHLNFGGLELLCKKNMVRGLPCISHPDQLCEGCLLGKQFRQSF 1511
            CL++  +D + LWHLRFGHL+  GL+ L +KNMV GLP + +  + CE C+L KQ R SF
Sbjct: 438  CLQVNVEDKASLWHLRFGHLHHAGLKRLAEKNMVHGLPNMDYEGKFCEECVLSKQTRTSF 497

Query: 1512 PKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXX 1691
             K++  +++  LELIH D+CGPI P SF    YF+ FIDDFSRKTWVYFLK+KS      
Sbjct: 498  QKKAEYQAKHILELIHTDICGPITPESFSGKRYFISFIDDFSRKTWVYFLKEKSEAFEVF 557

Query: 1692 XXXXXXXXXXSGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKN 1871
                      +  HIKA+R+DRGGE+TS  F ++CE  GIRR LT P SPQQNGVAERKN
Sbjct: 558  KKFKVMVEKATDRHIKAVRSDRGGEYTSTAFMKYCEEQGIRRFLTAPYSPQQNGVAERKN 617

Query: 1872 RTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLR 2051
            RT+L+MVRSMLKSK M K+FWAEAV CA+Y+ NR P   +  +TPQE W+G+KP +SHL+
Sbjct: 618  RTVLDMVRSMLKSKNMSKQFWAEAVQCAIYVQNRCPHAKLEDQTPQEVWSGQKPTVSHLK 677

Query: 2052 VFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPINGKIITSRDVIFDEEGE 2231
            VFGS+A+ H+PD++R+KL+DKS+K+IFIGYD  +KGYKL++PI+ K+I SRDV  +E  +
Sbjct: 678  VFGSVAYAHLPDQRRTKLEDKSQKYIFIGYDEKTKGYKLFDPISKKVIVSRDVRINEASK 737

Query: 2232 WDWGTHAKDYNFVPEFEDDEQVI-------VEQSGEEPIXXXXXXXXXXXXXXXLVERNE 2390
            WDW  ++ + N   E E+    +       +E+S  E                   E  +
Sbjct: 738  WDW-NNSTEVNV--EVEESSVAVPTSISTELEESDSED------------------EPLQ 776

Query: 2391 ERTRSLEELYEVTDKLENLTLFCLFADCEPVNFEEATQNKKWGDAMDEEIKSIKKNDTWE 2570
             R RSL++LYE T   E + L CL AD E +NFEEA +N+KW  AM+EEIK+I++N+TWE
Sbjct: 777  PRMRSLQDLYETT---EEVHLVCLLADTENINFEEALRNEKWKTAMNEEIKAIERNNTWE 833

Query: 2571 LAQLPKGHKAIGVKWVYKVKKNAKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETI 2750
            LA+LPKG + IGVKWV+K K NA+GE+ERYKARLVAKGY Q+AGIDYDEVFAPVAR+ETI
Sbjct: 834  LAELPKGSQPIGVKWVFKKKMNAQGEIERYKARLVAKGYKQKAGIDYDEVFAPVARMETI 893

Query: 2751 RLIISLAAQNKWKIHQMDVKSA 2816
            RL+IS AAQ KW I QMDVKSA
Sbjct: 894  RLLISQAAQFKWPIFQMDVKSA 915



 Score =  181 bits (459), Expect = 4e-43
 Identities = 87/180 (48%), Positives = 128/180 (71%)
 Frame = +3

Query: 33  MKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXXALFLIYQALDDDGFEK 212
           M+ALLGA + WEV   G+EE  D +  ++ +             AL+++++A+DD GFEK
Sbjct: 1   MQALLGALEAWEVTRDGFEEPTDTAGYTAAQNKALKETRSKDKTALYMLFRAVDDSGFEK 60

Query: 213 ISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYFSRVLTVSNQ 392
           I+ +T++K+ WD L+ +++G ++VK+VRLQTLR E + +QMKE E VSDY +RV TV NQ
Sbjct: 61  IAGSTTSKEAWDTLKKAFEGADRVKQVRLQTLRGELERMQMKESETVSDYITRVQTVVNQ 120

Query: 393 LKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQAHEEKKKKK 572
           L RNGE + D  ++EKILRSL   F++I   IEE+KDL T+++E+L GSL+AHE++K KK
Sbjct: 121 LTRNGEAVTDARVVEKILRSLTDKFENIVCAIEESKDLSTLSVEELAGSLEAHEQRKMKK 180