BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00008846
         (1022 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP35263.1| Retrovirus-related Pol polyprotein from transposo...   411   e-137
gb|KYP38726.1| Retrovirus-related Pol polyprotein from transposo...   411   e-135
gb|KYP46031.1| Retrovirus-related Pol polyprotein from transposo...   409   e-134
emb|CAN63777.1| hypothetical protein VITISV_043745 [Vitis vinifera]   410   e-133
gb|KYP36435.1| Retrovirus-related Pol polyprotein from transposo...   407   e-131
gb|KYP70668.1| Retrovirus-related Pol polyprotein from transposo...   392   e-130
gb|KYP53827.1| Retrovirus-related Pol polyprotein from transposo...   395   e-129
gb|KYP78729.1| Retrovirus-related Pol polyprotein from transposo...   414   e-129
gb|KYP33441.1| Retrovirus-related Pol polyprotein from transposo...   411   e-129
gb|KYP50151.1| Retrovirus-related Pol polyprotein from transposo...   402   e-129
gb|KYP33249.1| Retrovirus-related Pol polyprotein from transposo...   400   e-128
gb|KYP32982.1| Retrovirus-related Pol polyprotein from transposo...   408   e-127
gb|KYP47407.1| Retrovirus-related Pol polyprotein from transposo...   408   e-127
gb|KYP30912.1| Retrovirus-related Pol polyprotein from transposo...   391   e-127
gb|PKU72914.1| Retrovirus-related Pol polyprotein from transposo...   387   e-126
gb|PKU64856.1| Retrovirus-related Pol polyprotein from transposo...   387   e-126
gb|PKU81200.1| Retrovirus-related Pol polyprotein from transposo...   371   e-124
gb|KYP66812.1| Retrovirus-related Pol polyprotein from transposo...   384   e-123
gb|KYP64004.1| Retrovirus-related Pol polyprotein from transposo...   386   e-123
gb|KYP33754.1| Retrovirus-related Pol polyprotein from transposo...   386   e-123

>gb|KYP35263.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 570

 Score =  411 bits (1057), Expect = e-137
 Identities = 208/346 (60%), Positives = 257/346 (74%), Gaps = 6/346 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE  LPKYFWA+A++TAC+V+N+V IRP + KTPYE++ GR PNISYF++FGCKCF+
Sbjct: 55   TMLNETKLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYNGRKPNISYFRVFGCKCFV 114

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 115  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRQTE 174

Query: 358  DSDEEDIVE-PIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDK 534
              D  D+++ P+++S+ +N +P  S   +  K  +  LP   K   D   D IIG+    
Sbjct: 175  IEDLTDLLDQPLLESETNN-KPKESESHENTKETSEQLPKEWKTSRDLSIDNIIGNIGKG 233

Query: 535  VMTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQ 702
            V TR          A +SQ EPK+  EA++DE W + MQEELNQFERN+VW+LVP P   
Sbjct: 234  VSTRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDY 293

Query: 703  TIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSC 882
             IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS 
Sbjct: 294  PIIGTKWVFRNKLDESGIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSS 353

Query: 883  FKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
              NFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 354  IMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLKK 399


>gb|KYP38726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 749

 Score =  411 bits (1056), Expect = e-135
 Identities = 205/345 (59%), Positives = 255/345 (73%), Gaps = 5/345 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE +LPKYFWA+A++TAC+V+N+V IRP + KTPYE++KG+ PNISYF++FGCKC++
Sbjct: 40   TMLNETNLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYKGKKPNISYFRVFGCKCYV 99

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 100  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRQTE 159

Query: 358  DSDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKV 537
              D  ++++  +  +  N+ P  S   ++ K     LP   K   D   D IIG+    V
Sbjct: 160  IEDLNELLDQSLLENEPNEVPKESESHEKAKETCEQLPKEWKTSRDLSMDNIIGNIGKGV 219

Query: 538  MTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQT 705
             TR          A +SQ EPK+  EA++DE W + MQEELNQFERN+VW+LVP P    
Sbjct: 220  STRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDYP 279

Query: 706  IIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCF 885
            IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS  
Sbjct: 280  IIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSI 339

Query: 886  KNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            KNFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 340  KNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLKK 384


>gb|KYP46031.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 772

 Score =  409 bits (1050), Expect = e-134
 Identities = 204/345 (59%), Positives = 254/345 (73%), Gaps = 5/345 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE +LPKYFWA+A++TAC+V+N+V IRP + KTPYE++ GR PNISYF++FGCKC++
Sbjct: 301  TMLNETNLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYNGRKPNISYFRVFGCKCYV 360

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 361  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRQTE 420

Query: 358  DSDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKV 537
              D  ++++  +  +  N+ P  S   ++ K     LP   +   D   D IIG+    V
Sbjct: 421  IEDLTELLDQSLLENEPNEVPKESESHEKAKETCEQLPKEWRTSRDLSMDNIIGNIGKGV 480

Query: 538  MTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQT 705
             TR          A +SQ EPK+  EA++DE W + MQEELNQFERN+VW+LVP P    
Sbjct: 481  STRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDYP 540

Query: 706  IIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCF 885
            IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS  
Sbjct: 541  IIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSI 600

Query: 886  KNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            KNFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 601  KNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLKK 645


>emb|CAN63777.1| hypothetical protein VITISV_043745 [Vitis vinifera]
          Length = 898

 Score =  410 bits (1055), Expect = e-133
 Identities = 211/361 (58%), Positives = 262/361 (72%), Gaps = 21/361 (5%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE +LPKYFWAE V+T+CYV++R+ +RP + KTPYELWK + PNISYFK+FGCKCFI
Sbjct: 410  TMLNENNLPKYFWAETVNTSCYVLSRILLRPILKKTPYELWKNKKPNISYFKVFGCKCFI 469

Query: 181  LNTKDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPNDD 360
            LNTKD L K D K+D GIF+GYST SK +RV+NK + VVEESIHV F E++    +   +
Sbjct: 470  LNTKDNLGKFDAKSDVGIFLGYSTSSKVFRVFNKRTMVVEESIHVIFYESNN--SLQERE 527

Query: 361  SDEEDI----------VEPIVQSDAHNDQPSSSNVP------QEDKGDTS-NLPVALKFK 489
            S ++D+          +E   Q     + P     P      Q  +G++S +LP   KF 
Sbjct: 528  SFDDDLGLETSMGKLQIEDKRQQGKSGEDPKKEESPLTLPPPQPVQGESSQDLPKDWKFV 587

Query: 490  GDHPKDLIIGDPLDKVMTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQF 657
             +HP+D IIG+P   V TR          A I Q EPKN K+AI DE+W + MQEELNQF
Sbjct: 588  INHPQDQIIGNPXSGVRTRSSLRNICNNLAFIXQIEPKNIKDAIVDENWMIAMQEELNQF 647

Query: 658  ERNDVWELVPCPPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAP 837
            ER++VWELVP P +Q++IGTKWVFRNK+D+ G IVRNKARLVAQGY QE  IDY+ETFAP
Sbjct: 648  ERSEVWELVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEXXIDYEETFAP 707

Query: 838  VARLEAIRILLAYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLK 1017
            VARLEAIR+LLA++CFK+F LYQMDVKS FLNGFI EEVY +QPPGF++F+ PN VFKLK
Sbjct: 708  VARLEAIRMLLAFACFKDFILYQMDVKSXFLNGFINEEVYXEQPPGFQSFNFPNHVFKLK 767

Query: 1018 K 1020
            K
Sbjct: 768  K 768


>gb|KYP36435.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 963

 Score =  407 bits (1046), Expect = e-131
 Identities = 205/346 (59%), Positives = 255/346 (73%), Gaps = 6/346 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE  LPKYFWA+A++TAC+V+N+V IRP + KTPYE++ GR PNISYF++FGCKCF+
Sbjct: 270  TMLNETKLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYNGRKPNISYFRVFGCKCFV 329

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYRVYNK + +VEES+H+ F+E +  E    +
Sbjct: 330  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRVYNKRTLIVEESVHIVFDETNKQETKQTE 389

Query: 358  DSDEEDIVE-PIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDK 534
              D  D+++ P+++S+  N++P  S   +  +  +  LP   K   D   + IIG+    
Sbjct: 390  IEDLTDLLDQPLLESEP-NEKPKESESNETTENTSEQLPKEWKTSRDLSMENIIGNIGKG 448

Query: 535  VMTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQ 702
            V TR          A +SQ EPK   EA++DE W + MQEELNQFERN+VW+LVP P   
Sbjct: 449  VSTRRAIKNICNVMAFVSQVEPKTIDEALQDEHWLMAMQEELNQFERNEVWDLVPLPTDY 508

Query: 703  TIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSC 882
             IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS 
Sbjct: 509  PIIGTKWVFRNKLDESGIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSS 568

Query: 883  FKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
              NFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 569  IMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKYPNHVYKLKK 614


>gb|KYP70668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 548

 Score =  392 bits (1006), Expect = e-130
 Identities = 197/344 (57%), Positives = 245/344 (71%), Gaps = 5/344 (1%)
 Frame = +1

Query: 4    MLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFIL 183
            MLNE  LPKYFWA+A++TAC+V+N+V IRP + KTPYE++ GR PNISYF++FGCKCF+L
Sbjct: 1    MLNETKLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYNGRKPNISYFRVFGCKCFML 60

Query: 184  NT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPNDD 360
            N  K+Q+ K D K DE IF+GYST SKAYR+YNK + +V+ES+HV F E +  E    + 
Sbjct: 61   NNGKEQIGKFDAKDDEEIFLGYSTNSKAYRIYNKRTLIVKESVHVVFGETNKQETKQTEI 120

Query: 361  SDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKVM 540
             D  D+++  +     N++P  S   +  +  +  LP   K   D   + IIG+      
Sbjct: 121  EDLTDLLDQPLLETEPNEKPKESESNETTEDTSEQLPKESKTSRDLSMENIIGNIGKGGS 180

Query: 541  TRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQTI 708
            TR          A +SQ EPK   EA++DE W ++MQEELNQFERN+VW+LVP P    I
Sbjct: 181  TRRVIKNICNTMAFVSQVEPKTIDEALKDEHWLMDMQEELNQFERNEVWDLVPLPNDYPI 240

Query: 709  IGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCFK 888
            IGTKWVFRNK D+   I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS   
Sbjct: 241  IGTKWVFRNKFDESRIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSIM 300

Query: 889  NFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            NFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 301  NFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKYPNHVYKLKK 344


>gb|KYP53827.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 676

 Score =  395 bits (1014), Expect = e-129
 Identities = 197/345 (57%), Positives = 252/345 (73%), Gaps = 5/345 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE  LPKYFWA+A++T C+V+N+V IRP + KTPY+++ GR PNISYF++FGCKC++
Sbjct: 311  TMLNEIKLPKYFWADAINTTCHVLNKVLIRPILKKTPYKIYNGRKPNISYFRVFGCKCYV 370

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 371  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRKIE 430

Query: 358  DSDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKV 537
                 ++++  +  +  N++P  S   ++ +  +  LP   K   D   D IIG+    V
Sbjct: 431  IEYLTELLDQPLLENEPNEEPKESQSHEKVRETSEQLPKEWKTSRDLSMDNIIGNIGKGV 490

Query: 538  MTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQT 705
             TR          A +SQ EPK+  EA++DE W + MQEELNQFERN+VW+LVP P    
Sbjct: 491  STRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDYP 550

Query: 706  IIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCF 885
            IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS  
Sbjct: 551  IIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSI 610

Query: 886  KNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            KNFKLYQM+VKSAFLNG IQEEVY++Q PGF +F  PN V+KLK+
Sbjct: 611  KNFKLYQMNVKSAFLNGLIQEEVYMEQLPGFVDFKNPNHVYKLKR 655


>gb|KYP78729.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1564

 Score =  414 bits (1063), Expect = e-129
 Identities = 206/345 (59%), Positives = 256/345 (74%), Gaps = 5/345 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE +LPKYFWA+A++TAC+V+N+V IRP + KTPYE++KG+ PNISYF++FGCKC++
Sbjct: 855  TMLNETNLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYKGKKPNISYFRVFGCKCYV 914

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 915  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRQTE 974

Query: 358  DSDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKV 537
              D  ++++  +  +  N+ P  S   ++ K     LP   K   D   D IIG+    V
Sbjct: 975  IEDLNELLDQSLLENEPNEVPKESESLEKAKETCEQLPKEWKTSRDLSMDNIIGNIGKGV 1034

Query: 538  MTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQT 705
             TR          A +SQ EPKN  EA++DE W + MQEELNQFERN+VW+LVP P    
Sbjct: 1035 STRSAIKNICNTMAFVSQVEPKNIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDYP 1094

Query: 706  IIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCF 885
            IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS  
Sbjct: 1095 IIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSSI 1154

Query: 886  KNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            KNFKLYQMDVKSAFLNGFIQEEVYV+QPPGF ++  PN V+KLKK
Sbjct: 1155 KNFKLYQMDVKSAFLNGFIQEEVYVEQPPGFVDYKNPNHVYKLKK 1199


>gb|KYP33441.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1470

 Score =  411 bits (1057), Expect = e-129
 Identities = 208/346 (60%), Positives = 257/346 (74%), Gaps = 6/346 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE  LPKYFWA+A++TAC+V+N+V IRP + KTPYE++ GR PNISYF++FGCKCF+
Sbjct: 855  TMLNETKLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYNGRKPNISYFRVFGCKCFV 914

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 915  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRQTE 974

Query: 358  DSDEEDIVE-PIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDK 534
              D  D+++ P+++S+ +N +P  S   +  K  +  LP   K   D   D IIG+    
Sbjct: 975  IEDLTDLLDQPLLESETNN-KPKESESHENTKETSEQLPKEWKTSRDLSIDNIIGNIGKG 1033

Query: 535  VMTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQ 702
            V TR          A +SQ EPK+  EA++DE W + MQEELNQFERN+VW+LVP P   
Sbjct: 1034 VSTRSAIKNICNTMAFVSQVEPKSIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPTDY 1093

Query: 703  TIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSC 882
             IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS 
Sbjct: 1094 PIIGTKWVFRNKLDESGIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSS 1153

Query: 883  FKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
              NFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 1154 IMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLKK 1199


>gb|KYP50151.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1006

 Score =  402 bits (1033), Expect = e-129
 Identities = 206/350 (58%), Positives = 258/350 (73%), Gaps = 10/350 (2%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLN+ +LPKYFWA+A++T+C+V+N+V IRP + K PYE++KG+ PNISYF++FGCKC++
Sbjct: 301  TMLNKTNLPKYFWADAINTSCHVLNKVLIRPILKKIPYEIYKGKKPNISYFRVFGCKCYV 360

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN   +QL K D KADE IF+GYST SK+YR+YNK + VVEES+HV F+E+       N 
Sbjct: 361  LNNGNEQLGKFDAKADEAIFLGYSTNSKSYRIYNKRTLVVEESVHVVFDES-------NK 413

Query: 358  DSDEEDIVE----PIVQSDAHNDQPSSSNVPQEDKGDTS-NLPVALKFKGDHPKDLIIGD 522
             ++ ED+ E    P+++S+ +  + S  + P E   +T   LP   K   D   D IIG+
Sbjct: 414  QTEIEDLTELLDQPLLESEPN--EKSKESEPHEKARETCVQLPKEWKASRDLSMDNIIGN 471

Query: 523  PLDKVMTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPC 690
                V TR          A +SQ EPKN  EA++DE W + MQEELNQFERN+VW+LVP 
Sbjct: 472  IGKGVTTRSAIKNICNTMAFVSQVEPKNIDEALKDEHWLMAMQEELNQFERNEVWDLVPL 531

Query: 691  PPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILL 870
            P    IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LL
Sbjct: 532  PKDYPIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLL 591

Query: 871  AYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            AYS  KNFKLYQMDVKSAFLNG IQEEVYV+QPPGFE+F  PN V+KLKK
Sbjct: 592  AYSSLKNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEDFKNPNHVYKLKK 641


>gb|KYP33249.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1010

 Score =  400 bits (1029), Expect = e-128
 Identities = 203/345 (58%), Positives = 247/345 (71%), Gaps = 5/345 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE  LPKYFWA+A++TAC+V+N+V IRP + +TPYE++ GR PNISYF++FGCKCF+
Sbjct: 301  TMLNETKLPKYFWADAINTACHVLNKVLIRPILKRTPYEIYNGRKPNISYFRVFGCKCFV 360

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYRVYNK + VVEES+HV F+E +  E    +
Sbjct: 361  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRVYNKRTLVVEESVHVVFDETNKQETKKTE 420

Query: 358  DSDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKV 537
              D  D ++        +++P  S   +  K  +  LP   K   D   + IIG+    V
Sbjct: 421  IEDLTDFLDQPPLESEPSEKPKESESIETTKKTSEQLPKEWKTSKDLSIENIIGNIGKGV 480

Query: 538  MTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQT 705
             TR          A +SQ EPK   EA+ DE W + MQEELNQFERN+VW+LVP P    
Sbjct: 481  STRRSIKNICNTMAFVSQVEPKTIDEALHDEHWLMAMQEELNQFERNEVWDLVPLPSDYP 540

Query: 706  IIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCF 885
            IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAY+  
Sbjct: 541  IIGTKWVFRNKLDESGIIIRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYASI 600

Query: 886  KNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
             NFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 601  MNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKYPNHVYKLKK 645


>gb|KYP32982.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1533

 Score =  408 bits (1049), Expect = e-127
 Identities = 205/345 (59%), Positives = 252/345 (73%), Gaps = 5/345 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE +LPKYFWA+A++TAC+V+N+V IRP + KTPYE++KG+ PNISYF++FGCKC++
Sbjct: 824  TMLNETNLPKYFWADAINTACHVLNKVLIRPILKKTPYEIYKGKKPNISYFRVFGCKCYV 883

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SKAYR+YNK + VVEES+HV F+E++  E    +
Sbjct: 884  LNNGKEQLGKFDAKADEAIFLGYSTNSKAYRIYNKRTLVVEESVHVVFDESNKQETRQTE 943

Query: 358  DSDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKV 537
              D  ++++  +  +  ND    S    + K     LP   K   D   D IIG     V
Sbjct: 944  VEDLTELLDQSLLENEPNDVSKESESHVKQKETCEQLPKEWKTTRDLSMDNIIGSIGKGV 1003

Query: 538  MTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQT 705
             TR          A +SQ EPKN  EA++DE W + MQEELNQFERN+VW+LVP P    
Sbjct: 1004 STRSAIKNICNTMAFVSQVEPKNIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDYP 1063

Query: 706  IIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCF 885
            IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS  
Sbjct: 1064 IIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSTI 1123

Query: 886  KNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            +NFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 1124 RNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLKK 1168


>gb|KYP47407.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1569

 Score =  408 bits (1049), Expect = e-127
 Identities = 206/346 (59%), Positives = 260/346 (75%), Gaps = 6/346 (1%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLNE +LPKYFWA+A++TAC+V+NRV IRP + KTPYE++KG+ PNISYF++FGCKC++
Sbjct: 860  TMLNETNLPKYFWADAINTACHVLNRVLIRPILKKTPYEIYKGKKPNISYFRVFGCKCYV 919

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  K+QL K D KADE IF+GYST SK+YR+YNK + VVEES+HV F+E++  E    +
Sbjct: 920  LNNGKEQLGKFDAKADEAIFLGYSTNSKSYRIYNKRTLVVEESVHVVFDESNKQETRQTE 979

Query: 358  DSDEEDIVE-PIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDK 534
              D  ++++ P+++S+  N++   S   +++K     LP   K   +   D IIG+    
Sbjct: 980  IEDLNELLDQPLLESEP-NEKSKESVSHEKEKVTCEQLPKEWKTSRELSIDNIIGNIGKG 1038

Query: 535  VMTRGKFAE----KALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQ 702
            V TR          A +SQ EPKN  EA++DE W + MQEELNQFERN+VW+LVP P   
Sbjct: 1039 VTTRSAIKNICNTMAFVSQVEPKNIDEALKDEHWLMAMQEELNQFERNEVWDLVPLPKDY 1098

Query: 703  TIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSC 882
             IIGTKWVFRNKLD+ G I+RNKARLVA+GY QEEGIDYDETFAPVAR+EAIR+LLAYS 
Sbjct: 1099 PIIGTKWVFRNKLDESGIILRNKARLVAKGYNQEEGIDYDETFAPVARIEAIRLLLAYSS 1158

Query: 883  FKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
             KNFKLYQMDVKSAFLNG IQEEVYV+QPPGF +F  PN V+KLKK
Sbjct: 1159 IKNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFVDFKNPNHVYKLKK 1204


>gb|KYP30912.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 766

 Score =  391 bits (1005), Expect = e-127
 Identities = 201/349 (57%), Positives = 252/349 (72%), Gaps = 9/349 (2%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLN  +LP+ FWAEA++TACY+ NR+ +RP + +TPYELWKGR PNISYF  FGC+CFI
Sbjct: 98   TMLNSCNLPRSFWAEAINTACYLQNRILVRPILKRTPYELWKGRKPNISYFHPFGCECFI 157

Query: 181  LNTKDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPNDD 360
            LNTKD L+K D K+D+G F+GYS  SKAYRVYN  + VVEESIHVKFN+    +R  +D 
Sbjct: 158  LNTKDDLEKFDAKSDKGFFIGYSETSKAYRVYNSRTLVVEESIHVKFNDKKETDRELSDL 217

Query: 361  SDEEDIVEPIVQSDAHNDQPS-SSNVPQED--KGDTSNLPV---ALKFKGDHPKDLIIGD 522
             D+   +E        ++Q S +S+ P +   +  T  +P      ++K  HPK+ IIG 
Sbjct: 218  EDDFAGMELNTHDSRKDEQVSEASSEPLQTNVESQTDMIPPHKSEWRYKSHHPKEQIIGS 277

Query: 523  PLDKVMTRGKFAEK---ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCP 693
              + V TR KF      AL+S+ EPK+  EA+ DE W L MQEELNQF R+DVW LVP P
Sbjct: 278  TSEGVKTRSKFRHLNSLALLSEIEPKSIDEALHDEGWILAMQEELNQFARSDVWTLVPKP 337

Query: 694  PSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLA 873
              +TIIGTKWVFRNKL ++G ++RNKARLVAQGY Q+EGID+ ETFAPVARLEAIRILL+
Sbjct: 338  HGKTIIGTKWVFRNKLSEEGKVIRNKARLVAQGYNQQEGIDFTETFAPVARLEAIRILLS 397

Query: 874  YSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            Y+     KLYQMDVKSAFLNG I+EEV+V+QPPGFE+ + P  V KLKK
Sbjct: 398  YAVNNGIKLYQMDVKSAFLNGLIEEEVFVRQPPGFEDVAFPEHVCKLKK 446


>gb|PKU72914.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 701

 Score =  387 bits (995), Expect = e-126
 Identities = 197/350 (56%), Positives = 254/350 (72%), Gaps = 11/350 (3%)
 Frame = +1

Query: 4    MLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFIL 183
            ML E+SLP+YFWAEAVSTACYV+NRV +R  +NKTPYEL KGRTPN+S+  +FGCK FI 
Sbjct: 1    MLAEYSLPRYFWAEAVSTACYVLNRVNVRSNLNKTPYELVKGRTPNLSHLHVFGCKVFIH 60

Query: 184  NT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPNDD 360
            N  K  L K DPK+DEGIF+GYS+  K+YRV+NK + V+EE+ HV F+E        N++
Sbjct: 61   NNGKSALGKFDPKSDEGIFVGYSSVGKSYRVFNKRTLVIEETTHVVFDE--------NEN 112

Query: 361  SDEEDIVEPIVQSDAHN------DQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGD 522
             +E  +VE  ++ ++        ++    N+ +ED      LP  L+F  +HPK+LIIG+
Sbjct: 113  MEEPKVVEEEIEENSQKIDRLNLEENVEENIEREDP-----LPRDLRFSKNHPKELIIGE 167

Query: 523  PLDKVMTRGKFAEK----ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPC 690
            P + V TR    ++    A IS  EP N  +A+ DE W L MQEELNQF RN VWEL   
Sbjct: 168  PSEGVRTRRGLNKEVNHSAFISTIEPTNIDQALSDEFWILAMQEELNQFVRNKVWELTTR 227

Query: 691  PPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILL 870
            P  Q+++GTKWVF+NK++D G ++RNKARLVA+GY Q EGID++ETFAPVARLEAIR+LL
Sbjct: 228  PKDQSVVGTKWVFKNKMNDSGVVIRNKARLVAKGYNQIEGIDFEETFAPVARLEAIRVLL 287

Query: 871  AYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            A++CFK FKL+QMDVKSAFLNG I+E+V+V+QPPGFEN   PN VFKLKK
Sbjct: 288  AFACFKGFKLFQMDVKSAFLNGVIEEDVFVEQPPGFENSKFPNHVFKLKK 337


>gb|PKU64856.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 701

 Score =  387 bits (995), Expect = e-126
 Identities = 197/350 (56%), Positives = 254/350 (72%), Gaps = 11/350 (3%)
 Frame = +1

Query: 4    MLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFIL 183
            ML E+SLP+YFWAEAVSTACYV+NRV +R  +NKTPYEL KGRTPN+S+  +FGCK FI 
Sbjct: 1    MLAEYSLPRYFWAEAVSTACYVLNRVNVRSNLNKTPYELVKGRTPNLSHLHVFGCKVFIH 60

Query: 184  NT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPNDD 360
            N  K  L K DPK+DEGIF+GYS+  K+YRV+NK + V+EE+ HV F+E        N++
Sbjct: 61   NNGKSALGKFDPKSDEGIFVGYSSVGKSYRVFNKRTLVIEETTHVVFDE--------NEN 112

Query: 361  SDEEDIVEPIVQSDAHN------DQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGD 522
             +E  +VE  ++ ++        ++    N+ +ED      LP  L+F  +HPK+LIIG+
Sbjct: 113  MEEPKVVEEEIEENSQKIDRLNLEENVEENIEREDP-----LPRDLRFSKNHPKELIIGE 167

Query: 523  PLDKVMTRGKFAEK----ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPC 690
            P + V TR    ++    A IS  EP N  +A+ DE W L MQEELNQF RN VWEL   
Sbjct: 168  PSEGVRTRRGLNKEVNHSAFISTIEPTNIDQALSDEFWILAMQEELNQFVRNKVWELTTR 227

Query: 691  PPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILL 870
            P  Q+++GTKWVF+NK++D G ++RNKARLVA+GY Q EGID++ETFAPVARLEAIR+LL
Sbjct: 228  PKDQSVVGTKWVFKNKMNDSGVVIRNKARLVAKGYNQIEGIDFEETFAPVARLEAIRVLL 287

Query: 871  AYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            A++CFK FKL+QMDVKSAFLNG I+E+V+V+QPPGFEN   PN VFKLKK
Sbjct: 288  AFACFKGFKLFQMDVKSAFLNGVIEEDVFVEQPPGFENSKFPNHVFKLKK 337


>gb|PKU81200.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 402

 Score =  371 bits (952), Expect = e-124
 Identities = 188/344 (54%), Positives = 251/344 (72%), Gaps = 5/344 (1%)
 Frame = +1

Query: 4    MLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFIL 183
            ML+E+ LPKYFWAEA++TACYV N VY+R  + KTPYE++ G+ P IS+  +FGCKCFIL
Sbjct: 1    MLDEYKLPKYFWAEAINTACYVTNTVYLRTILKKTPYEIFFGKKPKISHLHVFGCKCFIL 60

Query: 184  NT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPNDD 360
            N  KD L K D K+D+GIF+GYS   K++RV+NK   +VEES+HV F+E S ++ I ND 
Sbjct: 61   NNDKDPLGKFDSKSDDGIFLGYSIFGKSFRVFNKRKLIVEESVHVIFDENS-IDLIRNDL 119

Query: 361  SDEEDIVEPIVQSDAHNDQPSSSNVPQEDKGDTSNLPVALKFKGDHPKDLIIGDPLDKVM 540
            +D+            H +     N+ +E +GD+  LP   ++  +HPK+ IIGDP   V 
Sbjct: 120  NDD------------HIENIKKINL-EEKEGDS--LPKEWRYNRNHPKESIIGDPSQGVK 164

Query: 541  TRGKFAEK----ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVWELVPCPPSQTI 708
            TR   +++    A +S+ EPKN  EA+++  W +  +EELNQF RND+WELV  P  Q I
Sbjct: 165  TRRNLSDEVEHSAFLSEIEPKNIDEALQNNFWIIAKEEELNQFIRNDIWELVTRPHDQNI 224

Query: 709  IGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEAIRILLAYSCFK 888
            IGTKWV++NKLDD G+I+RNKARLVAQGY Q EGI+++E+FAPVARLEAIR+LLA++CFK
Sbjct: 225  IGTKWVYKNKLDDSGSIIRNKARLVAQGYTQIEGINFEESFAPVARLEAIRLLLAFACFK 284

Query: 889  NFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
             FKL+QMDVKSAFLNG+I + V+V+QP GFE+ + PN V+KLKK
Sbjct: 285  VFKLFQMDVKSAFLNGYIDQYVFVEQPTGFESINFPNHVYKLKK 328


>gb|KYP66812.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 900

 Score =  384 bits (986), Expect = e-123
 Identities = 199/355 (56%), Positives = 249/355 (70%), Gaps = 15/355 (4%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLN+  LPKYFWAEAV+TACY +NR  IRP + KTPYEL+ GR PNIS+  IFGCKCF+
Sbjct: 187  TMLNDSKLPKYFWAEAVNTACYTMNRALIRPILKKTPYELFNGRKPNISHLHIFGCKCFV 246

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  KD L K D K+DEGIF+GYS  SK++R+YNK +  +EES+HV F+E + V      
Sbjct: 247  LNNGKDNLGKFDAKSDEGIFLGYSLNSKSFRIYNKRTMTIEESVHVVFDETNLV------ 300

Query: 358  DSDEEDIVEPIVQS--DAHNDQPSSSNVPQEDKGDTS--------NLPVALKFKGDHPKD 507
                 D+ + IV+S  D H ++ +  +   ++K D++        N     +   +HP +
Sbjct: 301  -CPRRDVFDEIVESFEDTHLNEQTHKDDKDKEKEDSTIQEGQTNINSEREWRISRNHPLE 359

Query: 508  LIIGDPLDKVMTRGKFAEK----ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVW 675
             IIGD    V+TR    E     + +S+ E KN  EA+ DE W   MQEELNQFERN VW
Sbjct: 360  NIIGDITKGVITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAMQEELNQFERNQVW 419

Query: 676  ELVPCPPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEA 855
            +LV  P +  IIGTKW+FRNKLD+ G ++RNKARLVA+GY QEEGIDY+ET+APVARLEA
Sbjct: 420  DLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGIDYEETYAPVARLEA 479

Query: 856  IRILLAYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            IR+LLAY+   +FKLYQMDVKSAFLNGFIQEEVYV+QPPGFEN   PN VFKLKK
Sbjct: 480  IRMLLAYASIMDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFPNHVFKLKK 534


>gb|KYP64004.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1021

 Score =  386 bits (992), Expect = e-123
 Identities = 201/355 (56%), Positives = 250/355 (70%), Gaps = 15/355 (4%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLN+  LPKYFWAEAV+TACY +NR  IRP + KTPYEL+ GR PNIS+  IFGCKCF+
Sbjct: 308  TMLNDSKLPKYFWAEAVNTACYTMNRALIRPILKKTPYELFNGRKPNISHLHIFGCKCFV 367

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  KD L K D K+DEGIF+GYS  SK++R+YNK +  +EESIHV F+E + V      
Sbjct: 368  LNNGKDNLGKFDAKSDEGIFLGYSLNSKSFRIYNKRTMTIEESIHVVFDETNLV------ 421

Query: 358  DSDEEDIVEPIVQS--DAHNDQPSSSNVPQEDKGDTS--------NLPVALKFKGDHPKD 507
                 DI++ IV+S  D H ++ +  +   ++K D++        N     +   +HP +
Sbjct: 422  -CPRRDIIDEIVESFEDTHINEQTHKDDKDKEKEDSTIQEGQTNINSQREWRISRNHPLE 480

Query: 508  LIIGDPLDKVMTRGKFAEK----ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVW 675
             IIGD    V+TR    E     + +S+ E KN  EA+ DE W   MQEELNQFERN VW
Sbjct: 481  NIIGDITKGVITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAMQEELNQFERNQVW 540

Query: 676  ELVPCPPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEA 855
            +LV  P +  IIGTKW+FRNKLD+ G ++RNKARLVA+GY QEEGIDY+ET+APVARLEA
Sbjct: 541  DLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGIDYEETYAPVARLEA 600

Query: 856  IRILLAYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            IR+LLAY+   +FKLYQMDVKSAFLNGFIQEEVYV+QPPGFEN   PN VFKLKK
Sbjct: 601  IRMLLAYASIMDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFPNHVFKLKK 655


>gb|KYP33754.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1011

 Score =  386 bits (991), Expect = e-123
 Identities = 201/355 (56%), Positives = 250/355 (70%), Gaps = 15/355 (4%)
 Frame = +1

Query: 1    SMLNEFSLPKYFWAEAVSTACYVINRVYIRPKMNKTPYELWKGRTPNISYFKIFGCKCFI 180
            +MLN+  LPKYFWAEAV+TACY +NR  IRP + KTPYEL+ GR PNIS+  IFGCKCF+
Sbjct: 298  TMLNDSKLPKYFWAEAVNTACYTMNRALIRPILKKTPYELFNGRKPNISHLHIFGCKCFV 357

Query: 181  LNT-KDQLDKLDPKADEGIFMGYSTKSKAYRVYNKTSGVVEESIHVKFNEASGVERIPND 357
            LN  KD L K D K+DEGIF+GYS  SK++R+YNK +  +EESIHV F+E + V      
Sbjct: 358  LNNGKDNLGKFDAKSDEGIFLGYSLNSKSFRIYNKRTMTIEESIHVVFDETNLV------ 411

Query: 358  DSDEEDIVEPIVQS--DAHNDQPSSSNVPQEDKGDTS--------NLPVALKFKGDHPKD 507
                 DI++ IV+S  D H ++ +  +   ++K D++        N     +   +HP +
Sbjct: 412  -CPRRDIIDEIVESFEDTHINEQTHKDDKDKEKEDSTIQEGQTNINPQREWRISRNHPLE 470

Query: 508  LIIGDPLDKVMTRGKFAEK----ALISQKEPKNAKEAIEDEDWFLEMQEELNQFERNDVW 675
             IIGD    V+TR    E     + +S+ E KN  EA+ DE W   MQEELNQFERN VW
Sbjct: 471  NIIGDITKGVITRNSLKEACNNMSFVSEIEVKNIDEALNDEHWINAMQEELNQFERNQVW 530

Query: 676  ELVPCPPSQTIIGTKWVFRNKLDDQGNIVRNKARLVAQGYCQEEGIDYDETFAPVARLEA 855
            +LV  P +  IIGTKW+FRNKLD+ G ++RNKARLVA+GY QEEGIDY+ET+APVARLEA
Sbjct: 531  DLVNRPTNHPIIGTKWIFRNKLDEHGLVIRNKARLVAKGYNQEEGIDYEETYAPVARLEA 590

Query: 856  IRILLAYSCFKNFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENFSRPNDVFKLKK 1020
            IR+LLAY+   +FKLYQMDVKSAFLNGFIQEEVYV+QPPGFEN   PN VFKLKK
Sbjct: 591  IRMLLAYASIMDFKLYQMDVKSAFLNGFIQEEVYVEQPPGFENSEFPNHVFKLKK 645