BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00007421
         (634 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   201   6e-61
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   186   2e-54

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  201 bits (511), Expect = 6e-61
 Identities = 117/201 (58%), Positives = 134/201 (66%), Gaps = 10/201 (4%)
 Frame = -2

Query: 585 MLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQP 406
           +LPKRVRV+SK +GRIFTVGRHDLH+LPSGKRAWVP+R P  AGG+ RRERP     K  
Sbjct: 13  VLPKRVRVVSKRSGRIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGNFRRERPLVVSHKTQ 72

Query: 405 VVRPIRAP--VKVENRFSPLCVEESLPAP-----KSKYSYADAVRAKA-SPAKARKGVVT 250
            VRPIR P  VK  NRF+PL V+E + A        K SYADA+R+ A      RKGVVT
Sbjct: 73  QVRPIRMPAAVKTSNRFAPLSVKEGVTAAVAAPINPKKSYADALRSSAFVKPSVRKGVVT 132

Query: 249 LVETSRDFTLFED--NTSAVCAIPGQTPAEAESLKREFAKRALVFSGRRLQPVGLPEDLS 76
           LVET +DF LF D    + V   PGQT  EAE+L+REF KR L FSGRRL   GLP    
Sbjct: 133 LVETEKDFALFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--G 190

Query: 75  SDPFASPLPRGPVPARRIAHV 13
           SDPFASP P  P    ++AHV
Sbjct: 191 SDPFASPSPVRPALTPKVAHV 211


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
 pir||JQ2018 hypothetical 36.5K protein - strawberry latent ringspot virus
           [Strawberry latent ringspot virus]
 emb|CAA49480.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
          Length = 331

 Score =  186 bits (471), Expect = 2e-54
 Identities = 110/179 (61%), Positives = 122/179 (68%), Gaps = 11/179 (6%)
 Frame = -2

Query: 588 GMLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQ 409
           G+LPKRVRVISK   RIFTVGRHDLH+LPSGKRAWVP+R P  AGGS RRERP     K 
Sbjct: 12  GVLPKRVRVISKRRARIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGSFRRERPPVVSHKT 71

Query: 408 PVVRPIRAP--VKVENRFSPLCVEESLPA------PKSKYSYADAVRAKA-SPAKARKGV 256
             VRPIR P  VK  NRF+ L V+E  P       PK K SYADA+R+ A     ARKGV
Sbjct: 72  QQVRPIRTPTAVKTSNRFASLSVKEEAPEAVAPFNPKKK-SYADALRSSAFVKPSARKGV 130

Query: 255 VTLVETSRDFTLF--EDNTSAVCAIPGQTPAEAESLKREFAKRALVFSGRRLQPVGLPE 85
           VTLVET +DF LF  E   + V   PGQT +EAESL+REF KRA  FSG+RL   GLPE
Sbjct: 131 VTLVETEKDFALFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPE 189