BLASTX nr result
ID: Rehmannia31_contig00006942
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia31_contig00006942
(739 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PIN12436.1| mRNA cleavage and polyadenylation factor I/II com... 209 1e-58
ref|XP_011074352.1| polyadenylation and cleavage factor homolog ... 186 4e-50
ref|XP_011074351.1| polyadenylation and cleavage factor homolog ... 186 4e-50
ref|XP_011074350.1| polyadenylation and cleavage factor homolog ... 186 4e-50
ref|XP_012838214.1| PREDICTED: polyadenylation and cleavage fact... 182 3e-49
gb|EPS70546.1| hypothetical protein M569_04214, partial [Genlise... 166 3e-47
gb|KZV54533.1| polyadenylation and cleavage factor4 [Dorcoceras ... 150 1e-37
ref|XP_022886495.1| polyadenylation and cleavage factor homolog ... 137 3e-33
ref|XP_022864102.1| polyadenylation and cleavage factor homolog ... 132 2e-31
ref|XP_022864101.1| polyadenylation and cleavage factor homolog ... 132 2e-31
ref|XP_010275998.1| PREDICTED: polyadenylation and cleavage fact... 129 2e-30
ref|XP_019173655.1| PREDICTED: polyadenylation and cleavage fact... 125 3e-29
ref|XP_019173654.1| PREDICTED: polyadenylation and cleavage fact... 125 3e-29
ref|XP_016492698.1| PREDICTED: polyadenylation and cleavage fact... 125 5e-29
ref|XP_009793882.1| PREDICTED: uncharacterized protein LOC104240... 125 5e-29
ref|XP_019257117.1| PREDICTED: polyadenylation and cleavage fact... 123 3e-28
ref|XP_010538701.1| PREDICTED: polyadenylation and cleavage fact... 122 4e-28
ref|XP_010538692.1| PREDICTED: polyadenylation and cleavage fact... 122 4e-28
ref|XP_010538686.1| PREDICTED: polyadenylation and cleavage fact... 122 4e-28
ref|XP_010538677.1| PREDICTED: polyadenylation and cleavage fact... 122 4e-28
>gb|PIN12436.1| mRNA cleavage and polyadenylation factor I/II complex, subunit
Pcf11 [Handroanthus impetiginosus]
Length = 940
Score = 209 bits (532), Expect = 1e-58
Identities = 104/115 (90%), Positives = 109/115 (94%)
Frame = +3
Query: 393 MDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRGA 572
MDRTSRFQNPMP+SSG F+KP PIQNDGVG+KPLPP ILDRFRAMVKEREEELRVFGRGA
Sbjct: 1 MDRTSRFQNPMPLSSGSFSKPPPIQNDGVGMKPLPPLILDRFRAMVKEREEELRVFGRGA 60
Query: 573 VFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
V PL+TDEIVRLYEI+LSELT NSKPIITDLTIIAGEQRAH EGIADAICARIIE
Sbjct: 61 VLPLNTDEIVRLYEIMLSELTINSKPIITDLTIIAGEQRAHAEGIADAICARIIE 115
>ref|XP_011074352.1| polyadenylation and cleavage factor homolog 4 isoform X3 [Sesamum
indicum]
Length = 940
Score = 186 bits (471), Expect = 4e-50
Identities = 95/115 (82%), Positives = 101/115 (87%)
Frame = +3
Query: 393 MDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRGA 572
MDR SRFQN +P+SSG NK IQNDGVG+KP+PPSILDRFRAMVKEREEELR FG G
Sbjct: 1 MDRASRFQNAVPLSSGSLNKAPQIQNDGVGMKPMPPSILDRFRAMVKEREEELRAFGGG- 59
Query: 573 VFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
PL TDEIVRLYEI+LSELT NSKPIITDLTIIAG+QRAHGEGIADAICARIIE
Sbjct: 60 --PLGTDEIVRLYEILLSELTINSKPIITDLTIIAGDQRAHGEGIADAICARIIE 112
>ref|XP_011074351.1| polyadenylation and cleavage factor homolog 4 isoform X2 [Sesamum
indicum]
Length = 964
Score = 186 bits (471), Expect = 4e-50
Identities = 95/115 (82%), Positives = 101/115 (87%)
Frame = +3
Query: 393 MDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRGA 572
MDR SRFQN +P+SSG NK IQNDGVG+KP+PPSILDRFRAMVKEREEELR FG G
Sbjct: 1 MDRASRFQNAVPLSSGSLNKAPQIQNDGVGMKPMPPSILDRFRAMVKEREEELRAFGGG- 59
Query: 573 VFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
PL TDEIVRLYEI+LSELT NSKPIITDLTIIAG+QRAHGEGIADAICARIIE
Sbjct: 60 --PLGTDEIVRLYEILLSELTINSKPIITDLTIIAGDQRAHGEGIADAICARIIE 112
>ref|XP_011074350.1| polyadenylation and cleavage factor homolog 4 isoform X1 [Sesamum
indicum]
Length = 967
Score = 186 bits (471), Expect = 4e-50
Identities = 95/115 (82%), Positives = 101/115 (87%)
Frame = +3
Query: 393 MDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRGA 572
MDR SRFQN +P+SSG NK IQNDGVG+KP+PPSILDRFRAMVKEREEELR FG G
Sbjct: 1 MDRASRFQNAVPLSSGSLNKAPQIQNDGVGMKPMPPSILDRFRAMVKEREEELRAFGGG- 59
Query: 573 VFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
PL TDEIVRLYEI+LSELT NSKPIITDLTIIAG+QRAHGEGIADAICARIIE
Sbjct: 60 --PLGTDEIVRLYEILLSELTINSKPIITDLTIIAGDQRAHGEGIADAICARIIE 112
>ref|XP_012838214.1| PREDICTED: polyadenylation and cleavage factor homolog 4
[Erythranthe guttata]
Length = 865
Score = 182 bits (463), Expect = 3e-49
Identities = 91/115 (79%), Positives = 99/115 (86%)
Frame = +3
Query: 393 MDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRGA 572
MDRTSRFQN +P+SSG FNKP PIQNDGV +KP P++ DRF + +KEREEELRVFG GA
Sbjct: 1 MDRTSRFQNNLPLSSGSFNKPPPIQNDGVAIKPSQPTLHDRFTSYLKEREEELRVFGGGA 60
Query: 573 VFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
PLSTDEIVRLYEIVL ELTTN KP+ITDLTIIAGEQ AH EGIADAICARIIE
Sbjct: 61 ALPLSTDEIVRLYEIVLLELTTNLKPVITDLTIIAGEQIAHSEGIADAICARIIE 115
>gb|EPS70546.1| hypothetical protein M569_04214, partial [Genlisea aurea]
Length = 261
Score = 166 bits (421), Expect = 3e-47
Identities = 84/116 (72%), Positives = 94/116 (81%)
Frame = +3
Query: 390 LMDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRG 569
+MDR SR Q+ +P+S G K IQ+DGVG+KP+PPSILDRFRAMVKEREEEL V RG
Sbjct: 18 IMDRASRLQSSVPLSRGTIYKSPAIQSDGVGIKPIPPSILDRFRAMVKEREEELGVLRRG 77
Query: 570 AVFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
A PL DE++RLYEIVLSELT NSKPIITDLTIIAGEQR H EGI D IC+RIIE
Sbjct: 78 APLPLRIDEMLRLYEIVLSELTMNSKPIITDLTIIAGEQREHAEGIVDVICSRIIE 133
>gb|KZV54533.1| polyadenylation and cleavage factor4 [Dorcoceras hygrometricum]
Length = 960
Score = 150 bits (378), Expect = 1e-37
Identities = 80/118 (67%), Positives = 92/118 (77%), Gaps = 3/118 (2%)
Frame = +3
Query: 393 MDRTSRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFG--- 563
MD SRFQN +P+S+G FNK P +ND G+KP P ILDRFRAMV++REEEL +FG
Sbjct: 1 MDNISRFQNHIPISNGSFNKLPPNRNDAFGMKPQPQIILDRFRAMVRDREEELGLFGSHV 60
Query: 564 RGAVFPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
AV LS DEIVR YEIVLSELT NSKP ITDLT+IAGEQ AH +GIA+AIC+RIIE
Sbjct: 61 EEAVSLLSMDEIVRFYEIVLSELTFNSKPTITDLTMIAGEQMAHAKGIAEAICSRIIE 118
>ref|XP_022886495.1| polyadenylation and cleavage factor homolog 4-like [Olea europaea
var. sylvestris]
Length = 904
Score = 137 bits (345), Expect = 3e-33
Identities = 74/114 (64%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Frame = +3
Query: 405 SRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRG---AV 575
SR++NP P+ +GGF K + ND KP PP ILDRFR M+KERE EL F G +
Sbjct: 6 SRYENPTPLKTGGFTK-SAMPNDVAPHKPSPPLILDRFRGMLKEREVELSFFNNGGHDSD 64
Query: 576 FPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
+ TDEIVRLYEIVLSELT N+KPIITDLT+IAGEQRAHG+GIA+AIC RIIE
Sbjct: 65 SNMGTDEIVRLYEIVLSELTLNAKPIITDLTMIAGEQRAHGKGIANAICNRIIE 118
>ref|XP_022864102.1| polyadenylation and cleavage factor homolog 4-like isoform X2 [Olea
europaea var. sylvestris]
Length = 899
Score = 132 bits (331), Expect = 2e-31
Identities = 71/114 (62%), Positives = 84/114 (73%), Gaps = 3/114 (2%)
Frame = +3
Query: 405 SRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRG---AV 575
SRF+N P+ +G F K + ND +KP PP I+DRFR M+KERE E VF G +
Sbjct: 6 SRFENSTPLKTGAFTK-SAMANDVASLKPPPPLIIDRFRGMLKEREAEFSVFNNGGHDSD 64
Query: 576 FPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
L T+EIVRLYEIVLSELT NSKPIITDLT+IAG+QRAH +GIA+AIC RIIE
Sbjct: 65 TNLGTEEIVRLYEIVLSELTLNSKPIITDLTMIAGQQRAHAKGIANAICDRIIE 118
>ref|XP_022864101.1| polyadenylation and cleavage factor homolog 4-like isoform X1 [Olea
europaea var. sylvestris]
Length = 903
Score = 132 bits (331), Expect = 2e-31
Identities = 71/114 (62%), Positives = 84/114 (73%), Gaps = 3/114 (2%)
Frame = +3
Query: 405 SRFQNPMPMSSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRG---AV 575
SRF+N P+ +G F K + ND +KP PP I+DRFR M+KERE E VF G +
Sbjct: 6 SRFENSTPLKTGAFTK-SAMANDVASLKPPPPLIIDRFRGMLKEREAEFSVFNNGGHDSD 64
Query: 576 FPLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
L T+EIVRLYEIVLSELT NSKPIITDLT+IAG+QRAH +GIA+AIC RIIE
Sbjct: 65 TNLGTEEIVRLYEIVLSELTLNSKPIITDLTMIAGQQRAHAKGIANAICDRIIE 118
>ref|XP_010275998.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
[Nelumbo nucifera]
Length = 1071
Score = 129 bits (324), Expect = 2e-30
Identities = 70/102 (68%), Positives = 81/102 (79%)
Frame = +3
Query: 432 SSGGFNKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELRVFGRGAVFPLSTDEIVRLY 611
S G N + + ND + KP PP IL++FRA++KEREEE+RV V P ST+EIVRLY
Sbjct: 27 SGGSINSSKAVPND-LAQKP-PPPILEKFRALLKEREEEMRVSDDDDVPPPSTEEIVRLY 84
Query: 612 EIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
E+VLSELT NSKPIIT+LTIIAGEQR HGEGIADAICARIIE
Sbjct: 85 EVVLSELTFNSKPIITELTIIAGEQREHGEGIADAICARIIE 126
>ref|XP_019173655.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X2 [Ipomoea nil]
Length = 978
Score = 125 bits (315), Expect = 3e-29
Identities = 67/113 (59%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Frame = +3
Query: 408 RFQNPMPMSSGGFNKPQPIQND--GVGVKPLPPSILDRFRAMVKEREEELRVFGR-GAVF 578
R QNP G F + + ND K PPSILDRF+AM+KER+EE+RV G +
Sbjct: 5 RLQNPRAAIGGSFASSKQMSNDTSAGASKSAPPSILDRFKAMLKERDEEVRVSSEDGVIS 64
Query: 579 PLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
P + DE+VRLYEIVLS+LT NSKPIIT+LTIIAGEQR H +GIA+AIC+RI+E
Sbjct: 65 PPTMDEVVRLYEIVLSDLTFNSKPIITELTIIAGEQREHSQGIANAICSRILE 117
>ref|XP_019173654.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X1 [Ipomoea nil]
Length = 980
Score = 125 bits (315), Expect = 3e-29
Identities = 67/113 (59%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Frame = +3
Query: 408 RFQNPMPMSSGGFNKPQPIQND--GVGVKPLPPSILDRFRAMVKEREEELRVFGR-GAVF 578
R QNP G F + + ND K PPSILDRF+AM+KER+EE+RV G +
Sbjct: 5 RLQNPRAAIGGSFASSKQMSNDTSAGASKSAPPSILDRFKAMLKERDEEVRVSSEDGVIS 64
Query: 579 PLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
P + DE+VRLYEIVLS+LT NSKPIIT+LTIIAGEQR H +GIA+AIC+RI+E
Sbjct: 65 PPTMDEVVRLYEIVLSDLTFNSKPIITELTIIAGEQREHSQGIANAICSRILE 117
>ref|XP_016492698.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
[Nicotiana tabacum]
Length = 900
Score = 125 bits (314), Expect = 5e-29
Identities = 70/113 (61%), Positives = 82/113 (72%), Gaps = 12/113 (10%)
Frame = +3
Query: 435 SGGFNKPQPIQNDGVGV---KPLP-PSILDRFRAMVKEREEELRVFGRGA--------VF 578
+GGF +PIQND V KPLP PSI++RFRA +KEREEELR V
Sbjct: 4 AGGFASSKPIQNDAVVAAPPKPLPSPSIIERFRAALKEREEELRASSMPVIDDDDDVIVL 63
Query: 579 PLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
P + DEIVRLYE+ LS+LT NSKP+ITDLTIIAGEQR HG+GIADAIC+RI+E
Sbjct: 64 PPTMDEIVRLYELFLSDLTFNSKPVITDLTIIAGEQREHGQGIADAICSRILE 116
>ref|XP_009793882.1| PREDICTED: uncharacterized protein LOC104240702 [Nicotiana
sylvestris]
Length = 982
Score = 125 bits (314), Expect = 5e-29
Identities = 70/113 (61%), Positives = 82/113 (72%), Gaps = 12/113 (10%)
Frame = +3
Query: 435 SGGFNKPQPIQNDGVGV---KPLP-PSILDRFRAMVKEREEELRVFGRGA--------VF 578
+GGF +PIQND V KPLP PSI++RFRA +KEREEELR V
Sbjct: 4 AGGFASSKPIQNDAVVAAPPKPLPSPSIIERFRAALKEREEELRASSMPVIDDDDDVIVL 63
Query: 579 PLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
P + DEIVRLYE+ LS+LT NSKP+ITDLTIIAGEQR HG+GIADAIC+RI+E
Sbjct: 64 PPTMDEIVRLYELFLSDLTFNSKPVITDLTIIAGEQREHGQGIADAICSRILE 116
>ref|XP_019257117.1| PREDICTED: polyadenylation and cleavage factor homolog 4 [Nicotiana
attenuata]
gb|OIS96062.1| polyadenylation and cleavage factor -like 4 [Nicotiana attenuata]
Length = 982
Score = 123 bits (308), Expect = 3e-28
Identities = 69/113 (61%), Positives = 81/113 (71%), Gaps = 12/113 (10%)
Frame = +3
Query: 435 SGGFNKPQPIQNDGVGV---KPLP-PSILDRFRAMVKEREEELRVFGRGA--------VF 578
+G F +PIQND V KPLP PSI++RFRA +KEREEELR V
Sbjct: 4 AGSFASSKPIQNDAVVAAPPKPLPSPSIIERFRAALKEREEELRASSMPVIDDDDDVIVL 63
Query: 579 PLSTDEIVRLYEIVLSELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
P + DEIVRLYE+ LS+LT NSKP+ITDLTIIAGEQR HG+GIADAIC+RI+E
Sbjct: 64 PPTMDEIVRLYELFLSDLTFNSKPVITDLTIIAGEQREHGQGIADAICSRILE 116
>ref|XP_010538701.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X4
[Tarenaya hassleriana]
Length = 741
Score = 122 bits (307), Expect = 4e-28
Identities = 65/98 (66%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +3
Query: 447 NKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELR-VFGRGAVFPLSTDEIVRLYEIVL 623
NK P++ + KP PPS+LDRFRA++ +REEEL V G V PL T+EIV LYE+VL
Sbjct: 20 NKAMPVE---LPQKPPPPSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVL 76
Query: 624 SELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
+ELT NSKPIITDLTIIAGEQR H EGIA+AICARI+E
Sbjct: 77 AELTFNSKPIITDLTIIAGEQREHAEGIANAICARILE 114
>ref|XP_010538692.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X3
[Tarenaya hassleriana]
Length = 761
Score = 122 bits (307), Expect = 4e-28
Identities = 65/98 (66%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +3
Query: 447 NKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELR-VFGRGAVFPLSTDEIVRLYEIVL 623
NK P++ + KP PPS+LDRFRA++ +REEEL V G V PL T+EIV LYE+VL
Sbjct: 20 NKAMPVE---LPQKPPPPSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVL 76
Query: 624 SELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
+ELT NSKPIITDLTIIAGEQR H EGIA+AICARI+E
Sbjct: 77 AELTFNSKPIITDLTIIAGEQREHAEGIANAICARILE 114
>ref|XP_010538686.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
[Tarenaya hassleriana]
Length = 794
Score = 122 bits (307), Expect = 4e-28
Identities = 65/98 (66%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +3
Query: 447 NKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELR-VFGRGAVFPLSTDEIVRLYEIVL 623
NK P++ + KP PPS+LDRFRA++ +REEEL V G V PL T+EIV LYE+VL
Sbjct: 20 NKAMPVE---LPQKPPPPSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVL 76
Query: 624 SELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
+ELT NSKPIITDLTIIAGEQR H EGIA+AICARI+E
Sbjct: 77 AELTFNSKPIITDLTIIAGEQREHAEGIANAICARILE 114
>ref|XP_010538677.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
[Tarenaya hassleriana]
Length = 814
Score = 122 bits (307), Expect = 4e-28
Identities = 65/98 (66%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Frame = +3
Query: 447 NKPQPIQNDGVGVKPLPPSILDRFRAMVKEREEELR-VFGRGAVFPLSTDEIVRLYEIVL 623
NK P++ + KP PPS+LDRFRA++ +REEEL V G V PL T+EIV LYE+VL
Sbjct: 20 NKAMPVE---LPQKPPPPSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVL 76
Query: 624 SELTTNSKPIITDLTIIAGEQRAHGEGIADAICARIIE 737
+ELT NSKPIITDLTIIAGEQR H EGIA+AICARI+E
Sbjct: 77 AELTFNSKPIITDLTIIAGEQREHAEGIANAICARILE 114