BLASTX nr result
ID: Rehmannia31_contig00005755
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia31_contig00005755
(2979 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 686 0.0
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo... 635 0.0
gb|ABG22121.1| polyprotein, partial [Solanum melongena] 613 0.0
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 635 0.0
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 652 0.0
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 609 0.0
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 651 0.0
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo... 634 0.0
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 604 0.0
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 600 0.0
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 600 0.0
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 600 0.0
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024... 611 0.0
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 592 0.0
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 594 0.0
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 591 0.0
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 583 0.0
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo... 583 0.0
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo... 583 0.0
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo... 582 0.0
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 686 bits (1770), Expect = 0.0
Identities = 338/429 (78%), Positives = 378/429 (88%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL++N+TWK+ LPKGKKAIGCKWV+ KKDGF +K++VRYKARLVAKGYAQKEGIDYNEV
Sbjct: 604 SLRRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDKSEVRYKARLVAKGYAQKEGIDYNEV 663
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR+ +DVKTAFLHGDLEEEIYMTQPEGFKVAGKEN C
Sbjct: 664 FSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMTQPEGFKVAGKENMFC 723
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
KL KSLYGLKQSPRQWYKRFDKFM+ QKYTRSKYDHCVYLRKL D SFIYLLLYVDDMLI
Sbjct: 724 KLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYLRKLHDGSFIYLLLYVDDMLI 783
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
AS+++ EI+KLK QLN EFEMKDLGEAKKILGMEISRDR G+LCLTQK+YLK+VL+RFG
Sbjct: 784 ASKNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFG 843
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
+++ +K VSTPLA H KLSA LSP++ E+ YM KVPYA+AVGSLMYAMVCTRPDIS AV
Sbjct: 844 ISDESKPVSTPLASHFKLSANLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAV 903
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
VVSRYMH+PGK HW AVKWILRYILNTVDVGLVF+Q+ + GQ +VGYCDS+YAGDLD R
Sbjct: 904 GVVSRYMHNPGKEHWQAVKWILRYILNTVDVGLVFQQE-QDGQNVVGYCDSNYAGDLDNR 962
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RSTTGY+FTLAKAPV W+STLQSTVALSTTEAEYMA++EAVKEAIWLQ LL +LG+ QKH
Sbjct: 963 RSTTGYVFTLAKAPVCWRSTLQSTVALSTTEAEYMALTEAVKEAIWLQGLLGELGILQKH 1022
Query: 1718 IIVHCDSQS 1692
+ VHCDSQS
Sbjct: 1023 VKVHCDSQS 1031
>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 503
Score = 635 bits (1638), Expect = 0.0
Identities = 304/495 (61%), Positives = 385/495 (77%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN TW +T+LPKGK+ + CKW++ KKDG P D R KARLV KG+ QKEGID+NE+
Sbjct: 7 SLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGIDFNEI 66
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVV+H+SIRI LDVKTAFLHG+LEEEIYM QPEGF V KE+ VC
Sbjct: 67 FSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVC 126
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQ+PRQWYK+FD FM+GQ Y+RSKYD C+Y ++ D +FIYLLLYVDDMLI
Sbjct: 127 QLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLI 186
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
AS+ + I KLKAQLN EFEMK+LG AKKILGMEI RDR GKL L+Q++Y++++L RF
Sbjct: 187 ASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFN 246
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M N K VSTPLA H KLS+ L P+ EE + M VPYA+AVGSLMYAMVCTRPD++ AV
Sbjct: 247 MN-NCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAV 305
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
S+VSRYMH+PGK HW AVKWI RY+ T ++GLVF+++ + G+ DSDY GDLD+R
Sbjct: 306 SMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRR 365
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS +GY+FTL + +SWK++LQS ALSTTEAEY++ +E VKEA+W++ L+++LG+ Q
Sbjct: 366 RSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDV 425
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
+ V CDSQSAIHL KN H +TKHIDV++HF+R+I+ G +LL+K+HT+ENPADMLTK
Sbjct: 426 LTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTKP 485
Query: 1538 VTSVKFKHCLYLINI 1494
+ + KF+HCL L+ +
Sbjct: 486 LPNAKFQHCLGLVGL 500
>gb|ABG22121.1| polyprotein, partial [Solanum melongena]
Length = 361
Score = 613 bits (1581), Expect = 0.0
Identities = 301/362 (83%), Positives = 328/362 (90%)
Frame = -2
Query: 2717 DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQ 2538
DVKTAF HGDL+EEIY +G KVA KENWVCKL KSLY +KQS RQWYK+FDKFM Q
Sbjct: 1 DVKTAFFHGDLKEEIYYDFSQGIKVASKENWVCKLNKSLY-MKQSSRQWYKQFDKFMQDQ 59
Query: 2537 KYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEA 2358
+YTRSKYDHCVY KLQ+ S++YLLLYVDDMLIA++SQ EID+LKAQL++EFEMKDLGEA
Sbjct: 60 RYTRSKYDHCVYFHKLQNGSYVYLLLYVDDMLIAAKSQFEIDRLKAQLSKEFEMKDLGEA 119
Query: 2357 KKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKLSAQLSPKND 2178
KKILGMEISRDR GKLCLTQKQYLKKVLQRFG+ +++K VSTPLAPHLKLS+QLSPK D
Sbjct: 120 KKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSSQLSPKTD 179
Query: 2177 EERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAVKWILRYILN 1998
EER+YM KVPYANAVGSLMYAMVCTR DISQAVSVVSRYMHDPGKGHW AVKWILRYI N
Sbjct: 180 EEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWILRYIKN 239
Query: 1997 TVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVAL 1818
TVD+GLVFEQD LG +VGYCDSDYAGDLDKRRSTTGYLFTLAK PVSWKSTLQ+TVAL
Sbjct: 240 TVDIGLVFEQDKSLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVAL 299
Query: 1817 STTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKNQVLHARTKHID 1638
STTEAEYMA++EAVKEAIWL LLE+LGVGQKH++VH DSQSAIHLAKNQV HARTKHID
Sbjct: 300 STTEAEYMAITEAVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAKNQVFHARTKHID 359
Query: 1637 VR 1632
VR
Sbjct: 360 VR 361
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 635 bits (1638), Expect = 0.0
Identities = 304/495 (61%), Positives = 385/495 (77%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN TW +T+LPKGK+ + CKW++ KKDG P D R KARLV KG+ QKEGID+NE+
Sbjct: 536 SLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGIDFNEI 595
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVV+H+SIRI LDVKTAFLHG+LEEEIYM QPEGF V KE+ VC
Sbjct: 596 FSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVC 655
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQ+PRQWYK+FD FM+GQ Y+RSKYD C+Y ++ D +FIYLLLYVDDMLI
Sbjct: 656 QLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLI 715
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
AS+ + I KLKAQLN EFEMK+LG AKKILGMEI RDR GKL L+Q++Y++++L RF
Sbjct: 716 ASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFN 775
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M N K VSTPLA H KLS+ L P+ EE + M VPYA+AVGSLMYAMVCTRPD++ AV
Sbjct: 776 MN-NCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAV 834
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
S+VSRYMH+PGK HW AVKWI RY+ T ++GLVF+++ + G+ DSDY GDLD+R
Sbjct: 835 SMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRR 894
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS +GY+FTL + +SWK++LQS ALSTTEAEY++ +E VKEA+W++ L+++LG+ Q
Sbjct: 895 RSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDV 954
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
+ V CDSQSAIHL KN H +TKHIDV++HF+R+I+ G +LL+K+HT+ENPADMLTK
Sbjct: 955 LTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTKP 1014
Query: 1538 VTSVKFKHCLYLINI 1494
+ + KF+HCL L+ +
Sbjct: 1015 LPNAKFQHCLGLVGL 1029
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 652 bits (1682), Expect = 0.0
Identities = 326/495 (65%), Positives = 386/495 (77%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN TW++ + P +K +GCKWVF KK+G R+KARLVAKG+ QKEGIDYNEV
Sbjct: 1347 SLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLVAKGFTQKEGIDYNEV 1406
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR+ LDVKTAFLHG+LEE IYM QPEGF V GKE+ VC
Sbjct: 1407 FSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVC 1466
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
L KSLYGLKQSPRQWYKRFD FM+ YTR YD CVY RKL D S IYLLLYVDDMLI
Sbjct: 1467 LLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLI 1526
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
AS++ EI+KLK+QL+ EFEMKDLG AKKILGM+I RDR +GKL ++QK Y++KVLQRFG
Sbjct: 1527 ASKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFG 1586
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + K VSTPLAPH KLSA+LSP++DEE+ M +PY++AVGS+MYAMVCTRPDIS AV
Sbjct: 1587 M-DKAKTVSTPLAPHFKLSAELSPQSDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAV 1645
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVSRYM PGK HW AVKWILRY+ + D+ LV++Q + GY DSDYAGDLDKR
Sbjct: 1646 SVVSRYMSCPGKEHWQAVKWILRYLRGSADLCLVYDQ-SDCTSSVTGYVDSDYAGDLDKR 1704
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT + +SWK+ LQSTVALSTTEAEYMA++EAVKEA+W++ L+ LG+ Q
Sbjct: 1705 RSLTGYVFTYSGGAISWKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDF 1764
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
+V CDSQSAIHL KNQ+ H RTKHIDVRYHFVRE + +G+I++ K+ T +NPADMLTKV
Sbjct: 1765 TVVFCDSQSAIHLTKNQMFHERTKHIDVRYHFVREHVTQGDIVISKVATEKNPADMLTKV 1824
Query: 1538 VTSVKFKHCLYLINI 1494
+ + KFKHCL LI I
Sbjct: 1825 IPAYKFKHCLDLIGI 1839
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 609 bits (1571), Expect = 0.0
Identities = 297/495 (60%), Positives = 377/495 (76%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN W++ PK +K +GCKWVF KK+G + + ++YKARLVAKGY+QKEG+DY+E+
Sbjct: 7 SLHKNSVWELVPKPKERKLVGCKWVFRKKEGVHDADAIKYKARLVAKGYSQKEGVDYDEI 66
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKH+SIR+ +DVKTAFLHGDLEE+IYM+QPEGF GKE+ VC
Sbjct: 67 FSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKEDLVC 126
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQSPRQWYKRFD +M+ YTR YD CVY +D I LLLYVDDMLI
Sbjct: 127 RLRKSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLLLYVDDMLI 186
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A + +I++LK +L EF+MKDLG A+ ILG+EI RDR +GK+ L+Q++Y+ +VL+RF
Sbjct: 187 ACKDMSKIEELKKKLGAEFDMKDLGAAQNILGIEIRRDRKAGKIWLSQEKYILRVLERFN 246
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + K VS PLA H +LSA+ P + +E D M VPYA+AVG LMYAM+CTRPD++QA+
Sbjct: 247 M-DGAKVVSIPLAAHYQLSAKQRPSSQKEIDAMKDVPYASAVGCLMYAMICTRPDLAQAL 305
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVS+YM +PGK HW AVKWILRY+ T +G++FE+ ++ + G+ D+DYAGDLDKR
Sbjct: 306 SVVSKYMSNPGKPHWEAVKWILRYLKGTRQLGIMFERKQEVA-CVAGFVDADYAGDLDKR 364
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RSTTGY+FT PVSWKSTLQ+ ALSTTEAEYMA++EA KEAIWL L + G+ Q+
Sbjct: 365 RSTTGYVFTCGGGPVSWKSTLQAVTALSTTEAEYMALTEASKEAIWLNGLASEFGIHQEG 424
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
++V CDSQSAIHLAKNQV HARTKHIDVRYH +R+ +E GNI++EK+HT +N AD LTK
Sbjct: 425 VVVKCDSQSAIHLAKNQVFHARTKHIDVRYHRIRDWVESGNIIVEKVHTNDNAADCLTKP 484
Query: 1538 VTSVKFKHCLYLINI 1494
V KFKHCL L+++
Sbjct: 485 VAVEKFKHCLNLLSV 499
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 651 bits (1679), Expect = 0.0
Identities = 328/500 (65%), Positives = 388/500 (77%), Gaps = 2/500 (0%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN TW++ + P +K +GCKWVF KK+G R+KARLVAKG+ QKEGIDYNEV
Sbjct: 1326 SLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLVAKGFTQKEGIDYNEV 1385
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR+ LDVKTAFLHG+LEE IYM QPEGF V GKE+ VC
Sbjct: 1386 FSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVC 1445
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
L KSLYGLKQSPRQWYKRFD FM+ YTR YD CVY RKL D S IYLLLYVDDMLI
Sbjct: 1446 LLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLI 1505
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
AS++ EI+KLK+QL+ EFEMKDLG AKKILGM+I RDR +GKL ++QK Y++KVLQRFG
Sbjct: 1506 ASKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFG 1565
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + K VSTPLAPH KLSA+LSP++DEE+ M +PY++AVGS+MYAMVCTRPDIS AV
Sbjct: 1566 M-DKAKTVSTPLAPHFKLSAELSPQSDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAV 1624
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVSRYM PGK HW AVKWILRY+ + D+ LV++Q + GY DSDYAGDLDKR
Sbjct: 1625 SVVSRYMSCPGKEHWQAVKWILRYLRGSADLCLVYDQ-SDCTSSVTGYVDSDYAGDLDKR 1683
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT + +SWK+ LQSTVALSTTEAEYMA++EAVKEA+W++ L+ LG+ Q
Sbjct: 1684 RSLTGYVFTYSGGAISWKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDF 1743
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
+V CDSQSAIHL KNQ+ H RTKHIDVRYHFVRE + +G+I++ K+ T +NPADMLTKV
Sbjct: 1744 TVVFCDSQSAIHLTKNQMFHERTKHIDVRYHFVREHVTQGDIVISKVATEKNPADMLTKV 1803
Query: 1538 VTSVKFKHCLYLIN--ILHI 1485
+ + KFKHCL LI I HI
Sbjct: 1804 IPAYKFKHCLDLIERFISHI 1823
>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
baccatum]
Length = 1526
Score = 634 bits (1636), Expect = 0.0
Identities = 303/497 (60%), Positives = 388/497 (78%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN+TW + LP+GK+ I CKW+F +K+G P + RYKAR V +G+ Q+EGID+NEV
Sbjct: 496 SLLKNETWDLVMLPEGKRVISCKWIFKRKEGIPGVENARYKARFVVRGFDQQEGIDFNEV 555
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVV+HSSIR+ LDVKTAFLHG+LEEEIY+ QPEGF V GKEN VC
Sbjct: 556 FSPVVRHSSIRVLLALVALYDLELEQLDVKTAFLHGNLEEEIYIQQPEGFVVPGKENHVC 615
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQSPRQWYKRFD FM G Y+RS YD+CVY +KL D S +YLLLYVDDMLI
Sbjct: 616 RLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSLVYLLLYVDDMLI 675
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++ + +DKLK QLN EF+MKDLG AKKILGMEI+RDR +GKL L+QK+Y+ K+L RFG
Sbjct: 676 AARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFG 735
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + K V+TPLA H KLS+ P+++EE+ M VPY+NAVGSLMYAMVCTRPD++ AV
Sbjct: 736 M-RDCKAVNTPLAAHFKLSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAV 794
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVSR+MH+PGK HW +VKWILRY+ + D+GLVF++ G+VGY D+DY GDLD+R
Sbjct: 795 SVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLVFDRQRSDPGGVVGYVDADYGGDLDRR 854
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS + Y+FTL + +SW S+LQ+ ALSTTEAEY+A +E VKEAIWL+ L+ +LG+ Q
Sbjct: 855 RSLSAYIFTLCGSAISWYSSLQAIAALSTTEAEYIAATEGVKEAIWLRGLVAELGLQQHI 914
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
+++ CDSQ+A+HLA+N+ H++TKHID++ HF+R+I++ G I +EKIHTTENPADMLTK
Sbjct: 915 LVMFCDSQTAVHLARNRKHHSKTKHIDIKCHFIRDIVDAGEITVEKIHTTENPADMLTKP 974
Query: 1538 VTSVKFKHCLYLINILH 1488
+ + KF HCL L + L+
Sbjct: 975 LPAAKFDHCLDLADYLY 991
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 604 bits (1558), Expect = 0.0
Identities = 301/496 (60%), Positives = 373/496 (75%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL+KN TW+V LPK KK I CKW+F +K+G + +YKARLVA+GY+Q G+DYN+V
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR LDVKTAFLHG+LEE+IYM QPEGF V GKE +VC
Sbjct: 902 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
KL +SLYGLKQSPRQW KRFD FM+ + RSKYD CVY++ + S IYLLLYVDDMLI
Sbjct: 962 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNG-SPIYLLLYVDDMLI 1020
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++S++EI KLK L+ EF+MKDLG AKKILGMEISRDR SG L L+Q Y+KKVLQRF
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M +N K VSTP+APH KLSA P D E +YM +VPY++AVGSLMYAMVC+RPD+S A+
Sbjct: 1081 M-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1139
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
S+VSRYM +PGK HW AV+WI RY+ T L F G+ +G++GY DSDYA DLD+R
Sbjct: 1140 SLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRR 1196
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT+ VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L +L +
Sbjct: 1197 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESC 1256
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
I +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK
Sbjct: 1257 ISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKP 1316
Query: 1538 VTSVKFKHCLYLINIL 1491
+ KF+ C L+ ++
Sbjct: 1317 IPVAKFELCSSLVGLI 1332
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 600 bits (1548), Expect = 0.0
Identities = 301/495 (60%), Positives = 375/495 (75%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN+TW + P G+K I CKWVF KK+G V+YKAR+VA+G+ Q+EG+DYNE+
Sbjct: 816 SLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEI 875
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVV+H+SIR+ LDVKTAFLHG+LEEEIYMTQP+GF+V GKEN VC
Sbjct: 876 FSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVC 935
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
KL KSLYGLKQSPRQWYKRFD +M+ YTRS YD CVY +L D+SFIYL+LYVDDMLI
Sbjct: 936 KLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLI 995
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++ + +I KLK L+ EFEMKDLG A+KILGMEI RDR KL L+Q+ Y++KVL RFG
Sbjct: 996 AAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFG 1055
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M+ ++K + TP A ++ L+A +P+++EE++YM +VPYA+AVGSLMYAMVCTRPD++ AV
Sbjct: 1056 MS-SSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAV 1114
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVSR+M PG+ HW AVK I RY+ T DVGL++ D + + GY DSDYAGD+D R
Sbjct: 1115 SVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQC--LVTGYSDSDYAGDVDTR 1172
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FTL + VSWK+TLQ TV LSTTEAEYMA++EA KE IWL+ L+ DLG+
Sbjct: 1173 RSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQ 1232
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
V+CDS SAI LAK+QV H RTKHIDVRYHF+R E I ++K+ T +NPADM TK
Sbjct: 1233 ATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKP 1289
Query: 1538 VTSVKFKHCLYLINI 1494
V KF+HCL L+NI
Sbjct: 1290 VPQSKFQHCLDLLNI 1304
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 600 bits (1548), Expect = 0.0
Identities = 299/496 (60%), Positives = 371/496 (74%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL+KN TW+V LPK KK I CKW+F +K+G + +YKARLVA+GY+Q G+DYN+V
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR LDVKTAFLHG+LEE+IYM QPEGF V GKE +VC
Sbjct: 902 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
KL +SLYGLKQSPRQW KRFD FM+ + RSKYD CVY++ + S IYLLLYVDDMLI
Sbjct: 962 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNG-SPIYLLLYVDDMLI 1020
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++S++EI KLK L+ EF+MKDLG AKKIL MEISRDR SG L L+Q Y+KKVLQRF
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M +N K VSTP+APH KLSA P D E +YM +VPY++AVGSLMYAMVC+RPD+S A+
Sbjct: 1081 M-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1139
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
S+VSRYM +PGK HW V+WI RY+ T L F G+ +G++GY DSDYA DLD+R
Sbjct: 1140 SLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRR 1196
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT+ VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L +L +
Sbjct: 1197 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESC 1256
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
I +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK
Sbjct: 1257 ISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKP 1316
Query: 1538 VTSVKFKHCLYLINIL 1491
+ KF+ C L+ ++
Sbjct: 1317 IPVAKFELCSSLVGLI 1332
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 600 bits (1546), Expect = 0.0
Identities = 299/496 (60%), Positives = 371/496 (74%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL+KN TW+V LPK KK I CKW+F +K+ +YKARLVA+GY+Q G+DYN+V
Sbjct: 844 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDV 903
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR LDVKTAFLHG+LEE+IYM QPEGF V GKE +VC
Sbjct: 904 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 963
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
KL +SLYGLKQSPRQW KRFD FM+ + RSKYD CVY++ + S IYLLLYVDDMLI
Sbjct: 964 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNG-SPIYLLLYVDDMLI 1022
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++S++EI KLK L+ EF+MKDLG AKKILGMEISRDR SG L L+Q Y+KKVLQRF
Sbjct: 1023 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1082
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M +N K VSTP+APH KLSA P D E +YM +VPY++AVGSLMYAMVC+RPD+S A+
Sbjct: 1083 M-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAM 1141
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
S+VSRYM +PGK HW A++WI RY+ T L F G+ +G++GY DSDYA DLD+R
Sbjct: 1142 SLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRR 1198
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT+ VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L +L +
Sbjct: 1199 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESC 1258
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
I +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK
Sbjct: 1259 ISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKP 1318
Query: 1538 VTSVKFKHCLYLINIL 1491
+ KF+ C L+ ++
Sbjct: 1319 IPVAKFELCSSLVGLI 1334
>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
Length = 1892
Score = 611 bits (1576), Expect = 0.0
Identities = 309/495 (62%), Positives = 378/495 (76%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL +N+TW + + PKG + +GCKWV+ KK+G P R+KARLVAKG++QKEGIDYNE+
Sbjct: 1403 SLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEVEAARFKARLVAKGFSQKEGIDYNEI 1462
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR+ LDVKTAFLHGDLEE IYM QPEGF GKE+ VC
Sbjct: 1463 FSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLEETIYMDQPEGFLAEGKEDHVC 1522
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQSPRQWYKRFD FM ++RS +D CVY +K+ S IYLLLYVDDMLI
Sbjct: 1523 QLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAFDSCVYHKKMSGNSMIYLLLYVDDMLI 1582
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A+ + EI+ LK L++EF+MKDLG AKKILGMEISR+ +G + L+QK+Y++KVL+RF
Sbjct: 1583 AANNITEINILKKLLSKEFDMKDLGVAKKILGMEISRE--NGVVHLSQKRYIRKVLERFN 1640
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + +K VSTPLA H KLS P++ +E ++M KVPYA+AVGS+MYAMVCTRPDI+Q+V
Sbjct: 1641 M-DMSKPVSTPLASHFKLSELQMPQSMDEVEHMSKVPYASAVGSIMYAMVCTRPDIAQSV 1699
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVS+YM +PGK HW AVKWILRY+ DVGL F + G I+GY DSDYAGDLD+R
Sbjct: 1700 SVVSKYMANPGKRHWEAVKWILRYLKGAPDVGLTFRKSE--GISILGYVDSDYAGDLDRR 1757
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RSTTGY+FTL + VSWKSTLQS VALSTTEAEYMA +EAVKEAIWL+ L+ +L Q
Sbjct: 1758 RSTTGYIFTLVGSAVSWKSTLQSIVALSTTEAEYMAATEAVKEAIWLKGLVAELSSAQLK 1817
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
I+ CDSQSAIHL KNQ H RTKHIDVR+HF+R+++E+G I +EK+ T +N ADMLTK+
Sbjct: 1818 SILKCDSQSAIHLIKNQRFHERTKHIDVRFHFIRDVVEKGAIKVEKVITDDNAADMLTKI 1877
Query: 1538 VTSVKFKHCLYLINI 1494
V KF HC L +
Sbjct: 1878 VPLAKFAHCKDLAGV 1892
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 592 bits (1527), Expect = 0.0
Identities = 301/495 (60%), Positives = 374/495 (75%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL+KN +W++ +LPK KK I CKW+F +K+G ++ RYKARLVAKGY+Q GID+N+V
Sbjct: 750 SLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDV 809
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKHSSIR +DVKTAFLHG+LEE+IYM QPEGF V GKEN VC
Sbjct: 810 FSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVC 869
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQSPRQWYKRFD FM+ QK+ RS YD CVYL K+ D S IYLLLYVDDMLI
Sbjct: 870 RLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLI 928
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++ + EI KLKAQL+ EFEMKDLG AKKILGMEI+R+R SGKL L+QK Y++KVL RF
Sbjct: 929 AAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFN 988
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + K VST LA H +LS+ L P++ + +YM +VPY++AV SLMYAMVC+RPD+S A+
Sbjct: 989 M-HDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHAL 1047
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVSRYM +PGK HW AV+WI RY+ T L F G+ G+VGY DSD+AGDLD+R
Sbjct: 1048 SVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQF---GRSSDGLVGYVDSDFAGDLDRR 1104
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT+ VSWK++LQ+TVALSTTEAEYMA+SEA KE IWL+ L +L
Sbjct: 1105 RSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSC 1164
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
I + CDSQSAI L K+Q+ H RTKHID+RYHF+R ++ EG++ + KI T +NP DM+TK
Sbjct: 1165 INIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKP 1224
Query: 1538 VTSVKFKHCLYLINI 1494
V + KF+ C L+ +
Sbjct: 1225 VPATKFELCSSLVGV 1239
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 594 bits (1531), Expect = 0.0
Identities = 292/487 (59%), Positives = 367/487 (75%), Gaps = 1/487 (0%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL KN W++ PK +K +GCKWVF KK+G + + YKARLVAKGY+QKEG+DY+E+
Sbjct: 807 SLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEI 866
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPVVKH+SIR+ +DVKTAFLHGDLEE+IYM+QPEGF GKEN VC
Sbjct: 867 FSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVC 926
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQSPRQWYK FD +M+ YTR +YD CVY +D I LLLYVDDMLI
Sbjct: 927 RLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLI 986
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A + L+I KLK +L EF+MKDLG A+KILG+EI RDR +GK+ L+Q++Y+ K+L+RF
Sbjct: 987 ACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFN 1046
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M E K VS PLA H +LSA+ P + +E D M VPYA+AVG LMYAM+CTRPD++QA+
Sbjct: 1047 MAE-AKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAM 1105
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQG-IVGYCDSDYAGDLDK 1902
SVVS+YM +PGK HW AVKWI +Y+ NT +G++FE+ + G+ + G+ DSD+AGDLD+
Sbjct: 1106 SVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFER--RQGEACVAGFVDSDFAGDLDR 1163
Query: 1901 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 1722
RRST GY+FT PVSWK+TLQ+ ALSTTEAEYMA++EA KEAIWL L LGV Q+
Sbjct: 1164 RRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQE 1223
Query: 1721 HIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTK 1542
++V CDSQSAIHLAKNQV HARTKHID RYH +R+ +E G I++EK+HT +N AD LTK
Sbjct: 1224 GVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTK 1283
Query: 1541 VVTSVKF 1521
V+ K+
Sbjct: 1284 PVSVEKY 1290
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 591 bits (1523), Expect = 0.0
Identities = 300/495 (60%), Positives = 372/495 (75%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 2799
SL+KN TW++ +LPK KK I CKW+F +K G ++ RYKARLVAKGY+Q GID+N+V
Sbjct: 720 SLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDV 779
Query: 2798 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 2619
FSPV+KHSSIR +DVKTAFLHG+LEE+IYM QPEGF V GKEN V
Sbjct: 780 FSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVY 839
Query: 2618 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 2439
+L KSLYGLKQSPRQWYKRFD FM QK+ RS YD CVYL K+ D S IYLLLYVDDMLI
Sbjct: 840 RLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYL-KVVDGSSIYLLLYVDDMLI 898
Query: 2438 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 2259
A++ + EI+KLKAQL+ EFEMKDLG AKKILGMEI+R+R SGKL L+QK Y++KVL+RF
Sbjct: 899 AAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFN 958
Query: 2258 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 2079
M + K VSTPLA H +LS+ L P++D + +YM +VPY + VGSLMYAMVC+R D+S A+
Sbjct: 959 M-HDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHAL 1017
Query: 2078 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 1899
SVVSRYM +PGK HW V+WI +Y+ T L F G+ G+VGY DSD+AGDLD+R
Sbjct: 1018 SVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQF---GRSRDGLVGYVDSDFAGDLDRR 1074
Query: 1898 RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 1719
RS TGY+FT+ VSWK++LQ+TVALSTTE EYMA+SEA KEAIWL+ L +L
Sbjct: 1075 RSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSC 1134
Query: 1718 IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 1539
I + CDSQSAI K+Q+ H RTKHIDVRYHF+R ++ EG++ + KI T +NPADM+TK
Sbjct: 1135 INIFCDSQSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKP 1194
Query: 1538 VTSVKFKHCLYLINI 1494
V + KF+ C L+ +
Sbjct: 1195 VPTTKFELCSSLVGV 1209
>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 583 bits (1504), Expect = 0.0
Identities = 295/497 (59%), Positives = 369/497 (74%), Gaps = 1/497 (0%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNE 2802
+L +NKTW++ LPKG+KAIGCKWV+ K+DG N RY+ARLV KGYAQKEGID+NE
Sbjct: 764 ALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNE 821
Query: 2801 VFSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWV 2622
+FSPVV+ ++IR+ LDVKTAFLHG+L+EEIYM QPEGFK GKEN V
Sbjct: 822 IFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLV 881
Query: 2621 CKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDML 2442
C+L KSLYGLKQ+PR WYKRFD F++ Y R DHC Y + D FI LLLYVDDML
Sbjct: 882 CRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML 941
Query: 2441 IASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRF 2262
+ ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL KVL+RF
Sbjct: 942 VVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRF 1001
Query: 2261 GMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQA 2082
M ++ K +STPL + KLS+ +SP N+ ER M +VPYA+AVGSLMYAM+CTRPDI+QA
Sbjct: 1002 NM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1060
Query: 2081 VSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDK 1902
V VSR+M DPG+ HW VK ILRYI T DV L FE + GY DSD+AGDLDK
Sbjct: 1061 VGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFAGDLDK 1117
Query: 1901 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 1722
R+STTGY+FTLA VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+LG Q+
Sbjct: 1118 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQE 1177
Query: 1721 HIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTK 1542
I V+CDSQSA+H+A+N H+RTKHI ++YHFVRE++EEG + ++KIHT +N AD++TK
Sbjct: 1178 KITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADVMTK 1237
Query: 1541 VVTSVKFKHCLYLINIL 1491
V + KF C L +L
Sbjct: 1238 PVNTDKFTWCRSLFGLL 1254
>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 583 bits (1504), Expect = 0.0
Identities = 295/497 (59%), Positives = 369/497 (74%), Gaps = 1/497 (0%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNE 2802
+L +NKTW++ LPKG+KAIGCKWV+ K+DG N RY+ARLV KGYAQKEGID+NE
Sbjct: 764 ALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNE 821
Query: 2801 VFSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWV 2622
+FSPVV+ ++IR+ LDVKTAFLHG+L+EEIYM QPEGFK GKEN V
Sbjct: 822 IFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLV 881
Query: 2621 CKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDML 2442
C+L KSLYGLKQ+PR WYKRFD F++ Y R DHC Y + D FI LLLYVDDML
Sbjct: 882 CRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML 941
Query: 2441 IASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRF 2262
+ ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL KVL+RF
Sbjct: 942 VVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRF 1001
Query: 2261 GMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQA 2082
M ++ K +STPL + KLS+ +SP N+ ER M +VPYA+AVGSLMYAM+CTRPDI+QA
Sbjct: 1002 NM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1060
Query: 2081 VSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDK 1902
V VSR+M DPG+ HW VK ILRYI T DV L FE + GY DSD+AGDLDK
Sbjct: 1061 VGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFAGDLDK 1117
Query: 1901 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 1722
R+STTGY+FTLA VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+LG Q+
Sbjct: 1118 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQE 1177
Query: 1721 HIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTK 1542
I V+CDSQSA+H+A+N H+RTKHI ++YHFVRE++EEG + ++KIHT +N AD++TK
Sbjct: 1178 KITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADVMTK 1237
Query: 1541 VVTSVKFKHCLYLINIL 1491
V + KF C L +L
Sbjct: 1238 PVNTDKFTWCRSLFGLL 1254
>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 583 bits (1504), Expect = 0.0
Identities = 295/497 (59%), Positives = 369/497 (74%), Gaps = 1/497 (0%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNE 2802
+L +NKTW++ LPKG+KAIGCKWV+ K+DG N RY+ARLV KGYAQKEGID+NE
Sbjct: 813 ALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNE 870
Query: 2801 VFSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWV 2622
+FSPVV+ ++IR+ LDVKTAFLHG+L+EEIYM QPEGFK GKEN V
Sbjct: 871 IFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLV 930
Query: 2621 CKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDML 2442
C+L KSLYGLKQ+PR WYKRFD F++ Y R DHC Y + D FI LLLYVDDML
Sbjct: 931 CRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML 990
Query: 2441 IASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRF 2262
+ ++ +I +LKAQL +EF+MKDLG A KILGM+I RDR + ++ L+QK YL KVL+RF
Sbjct: 991 VVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRF 1050
Query: 2261 GMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQA 2082
M ++ K +STPL + KLS+ +SP N+ ER M +VPYA+AVGSLMYAM+CTRPDI+QA
Sbjct: 1051 NM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109
Query: 2081 VSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDK 1902
V VSR+M DPG+ HW VK ILRYI T DV L FE + GY DSD+AGDLDK
Sbjct: 1110 VGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFAGDLDK 1166
Query: 1901 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 1722
R+STTGY+FTLA VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+LG Q+
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQE 1226
Query: 1721 HIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTK 1542
I V+CDSQSA+H+A+N H+RTKHI ++YHFVRE++EEG + ++KIHT +N AD++TK
Sbjct: 1227 KITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADVMTK 1286
Query: 1541 VVTSVKFKHCLYLINIL 1491
V + KF C L +L
Sbjct: 1287 PVNTDKFTWCRSLFGLL 1303
>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 582 bits (1500), Expect = 0.0
Identities = 294/497 (59%), Positives = 368/497 (74%), Gaps = 1/497 (0%)
Frame = -2
Query: 2978 SLQKNKTWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNE 2802
+L +NKTW++ LPKG+KAIGCKWV+ K+DG N RY+ARLV KGYAQKEGID+NE
Sbjct: 764 ALHRNKTWELVDLPKGRKAIGCKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNE 821
Query: 2801 VFSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWV 2622
+FSPVV+ ++IR+ LDVKTAFLHG+L+EEIYM QPEGFK GKEN V
Sbjct: 822 IFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLV 881
Query: 2621 CKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDML 2442
C+L KSLYGLKQ+PR WYKRFD F++ Y R DHC Y + D FI LLLYVDDML
Sbjct: 882 CRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDML 941
Query: 2441 IASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRF 2262
+ ++ +I +LKAQL +EF+MKDLG A KILGM+I RD+ K+ L+Q+ YL KVL+RF
Sbjct: 942 VVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDKKDRKIWLSQRNYLLKVLRRF 1001
Query: 2261 GMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQA 2082
M ++ K +STPL + KLS+ +SP N+ ER M +VPYA+AVGSLMYAM+CTRPDI+QA
Sbjct: 1002 NM-QDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1060
Query: 2081 VSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDK 1902
V VSR+M DPG+ HW VK ILRYI T DV L FE + GY DSD+AGDLDK
Sbjct: 1061 VGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFF---VRGYVDSDFAGDLDK 1117
Query: 1901 RRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQK 1722
R+STTGY+FTLA VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+LG Q+
Sbjct: 1118 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQE 1177
Query: 1721 HIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTK 1542
I V+CDSQSA+H+A+N H+RTKHI ++YHFVRE++EEG + ++KIHT +N AD++TK
Sbjct: 1178 KITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGKVDMQKIHTKDNIADVMTK 1237
Query: 1541 VVTSVKFKHCLYLINIL 1491
V + KF C L +L
Sbjct: 1238 PVNTDKFTWCRSLFGLL 1254