BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00004950
         (4283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAX03473.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2592   0.0  
dbj|BAX03478.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2433   0.0  
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                2422   0.0  
gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica m...  2417   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2398   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2397   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2393   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2393   0.0  
emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2392   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2392   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2390   0.0  
gb|AMY62703.1| RNA-dependent RNA polymerase [Plantago asiatica m...  2390   0.0  
gb|AMY62723.1| RNA-dependent RNA polymerase [Plantago asiatica m...  2389   0.0  
gb|ANY93292.1| RdRp [Plantago asiatica mosaic virus]                 2389   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  2387   0.0  
gb|AMY62718.1| RNA-dependent RNA polymerase [Plantago asiatica m...  2384   0.0  
gb|AMY62713.1| RNA-dependent RNA polymerase [Plantago asiatica m...  2384   0.0  
gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]                 2383   0.0  
gb|AVL84357.1| RNA-dependent RNA polymerase [Plantago asiatica m...  2365   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] >gi|...  2319   0.0  

>dbj|BAX03473.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1387

 Score = 2592 bits (6718), Expect = 0.0
 Identities = 1270/1384 (91%), Positives = 1319/1384 (95%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVFSQLTDPSLKAVIQDEAYRTLK ELA TRHSNPFAQ+PEAADALEALGINSHP
Sbjct: 1    MSNVRNVFSQLTDPSLKAVIQDEAYRTLKHELAHTRHSNPFAQSPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPK+NPVSFLFMKP+KLR+FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKDNPVSFLFMKPSKLRYFHRGPTHGDLFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+TV+SRLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETVLSRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYS+DGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA NQPTITA
Sbjct: 181  EALYRLRSLYPQIYTLTYSDDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTANNQPTITA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE+YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QRLLRPLRSDIQ++LQFFRGRPSFV+LIKALDWQP+TLEFPVR+VNT+LRGPPGF N
Sbjct: 361  NLLQRLLRPLRSDIQKILQFFRGRPSFVRLIKALDWQPVTLEFPVRSVNTKLRGPPGFRN 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFTKPHPVNPDD DTMR+FREF++T + S+P T+ADSLEGSAEN   HTSLKVGH+DLST
Sbjct: 421  PFTKPHPVNPDDDDTMRSFREFTHTLDNSSPATVADSLEGSAENPTIHTSLKVGHSDLST 480

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
            EQLRALHELGN+RLGGPLLPKIT  EQ RE          PT  S    Q +H DQ PVN
Sbjct: 481  EQLRALHELGNSRLGGPLLPKITLNEQSREPCPDLPPEPRPTTTSTTQAQENHPDQAPVN 540

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
            S+P+TLPWV+WLPKLNALGFEALEIQ DPSTG+ IMPITDVR L KATLPEHW EP LSK
Sbjct: 541  SEPSTLPWVSWLPKLNALGFEALEIQIDPSTGDTIMPITDVRSLQKATLPEHWIEPSLSK 600

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +LTTLRSLNR PT WCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ MLTDNVT NL
Sbjct: 601  ILTTLRSLNRSPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQAMLTDNVTTNL 660

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQ++LRQNPDLP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 661  AISVIHGAGGSGKSQALQSMLRQNPDLPMEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 720

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCSKSP+V+FDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP
Sbjct: 721  FVCSKSPVVVFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 780

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIF++LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKA
Sbjct: 781  ATTIFTKLSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLIKKA 840

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 841  AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 900

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVEDK TTLDDFKE L
Sbjct: 901  AFWEKLEATPYLKTFLSLVREDKIEEFAAPKDAPKPIAPPVTHFPVEDKSTTLDDFKEGL 960

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
            +DKF+REIFTEAHGHTNCVQG+DPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF
Sbjct: 961  NDKFDREIFTEAHGHTNCVQGNDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1020

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI+QIKGGERRQSP
Sbjct: 1021 RAKKDLGDILWTNYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSP 1080

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP
Sbjct: 1081 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1140

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVL++WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1141 NNIMINCEKTPQDLSRWVLSHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1200

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDD
Sbjct: 1201 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDD 1260

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSFALLKNRIALQAKPAY+PQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1261 CAIAQVCPEKPSFALLKNRIALQAKPAYSPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1320

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAISNV+ANYSLDA+LAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG
Sbjct: 1321 ELAKAQKKAGVKDAISNVVANYSLDARLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1380

Query: 72   SPFL 61
            SPFL
Sbjct: 1381 SPFL 1384


>dbj|BAX03478.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1387

 Score = 2433 bits (6305), Expect = 0.0
 Identities = 1191/1384 (86%), Positives = 1259/1384 (90%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1    MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSPEAADALEKLGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPV+FLFMKPAKLR+FHRGPTH D FLN HV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVAFLFMKPAKLRYFHRGPTHRDLFLNDHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T++SRLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETILSRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH+YDQLEWLTVGHL+A  QPT+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHRYDQLEWLTVGHLSAQGQPTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNY+TP +RTFTT + YVTVPDIFLPERYNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYMTPPKRTFTTADQYVTVPDIFLPERYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QRLLRP+R+D+QR++QFF+G+PSFVKLIKALDWQPITLEFPVR+V T +RGPPGF +
Sbjct: 361  NLLQRLLRPIRADMQRIVQFFKGQPSFVKLIKALDWQPITLEFPVRSVKTHVRGPPGFQS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFTKPHPVN DD  T + F++F+     +T  T+A +LE + E  A HT LK+    L+ 
Sbjct: 421  PFTKPHPVNTDDGQTSKDFQDFTLRGAGTTHHTVAAALEATTECEAGHTCLKIATEHLTE 480

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALH LGNTR GGPLLP  T   Q  E            +        +   + P N
Sbjct: 481  PQLLALHNLGNTRCGGPLLPPATTSAQVEEPCPDLPPAPRAAEGQTQTPPQEEQGEQPRN 540

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             +P  LPWVAWLPKLNALGFEA EIQTDPSTG +IMPITD  DLP+ATLP HW +P L K
Sbjct: 541  VEPNELPWVAWLPKLNALGFEAREIQTDPSTGAMIMPITDTLDLPRATLPAHWEDPELQK 600

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +LTTLRSLNRFPT W PDRARARAFTSDVKNSRTGKALHRE+  WKETQT+LTD    +L
Sbjct: 601  ILTTLRSLNRFPTPWTPDRARARAFTSDVKNSRTGKALHRESLVWKETQTLLTDTADVDL 660

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+P LPIEVVLPTNELRLDWL+KLPHNPPEQFRTFERA
Sbjct: 661  AISVIHGAGGSGKSQALQTLLRQDPTLPIEVVLPTNELRLDWLRKLPHNPPEQFRTFERA 720

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+SP+VIFDDYGKLPQGY+EAFAMTHA+LELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 721  FVCSRSPVVIFDDYGKLPQGYLEAFAMTHANLELVILTGDPRQSTHHEANEEALISKLTP 780

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT +F++LSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPGLHLLVPSL+KKA
Sbjct: 781  ATAVFAQLSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLMKKA 840

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 841  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 900

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EFS                PVE + TTLDDFKE L
Sbjct: 901  AFWEKLEATPYLKTFLSLVREDKIMEFSASDDSPAPVAPPTTHFPVEGRSTTLDDFKEEL 960

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF EAHGHTNCVQ DD T QLFSHQQAKDEALLWETIKARLTISTPEANLEEF
Sbjct: 961  DDKFDREIFNEAHGHTNCVQTDDTTIQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1020

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NYHKAM LPKEQP+FSEDLW RCAEEVQNTYLKKSI+QIKGGERRQSP
Sbjct: 1021 RAKKDLGDILWVNYHKAMGLPKEQPDFSEDLWVRCAEEVQNTYLKKSINQIKGGERRQSP 1080

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFH H+ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP
Sbjct: 1081 DFHTHEILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1140

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQD+SRWV+NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1141 NNIMINCEKTPQDISRWVMNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1200

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1201 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1260

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF LLKNR+ALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1261 CAIAQVCPEKPSFTLLKNRLALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1320

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG
Sbjct: 1321 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1380

Query: 72   SPFL 61
            SPFL
Sbjct: 1381 SPFL 1384


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 2422 bits (6277), Expect = 0.0
 Identities = 1197/1384 (86%), Positives = 1259/1384 (90%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRH+NPFAQ+P+AADALEALGINSHP
Sbjct: 1    MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSPDAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +
Sbjct: 361  NLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T  +FREF      S   T+ + LE S E+  +HTSLKV    LS 
Sbjct: 421  PFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSP 480

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
            EQL ALHELGN+R GGP+LPK +                  T  S+ L +  H    P  
Sbjct: 481  EQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQ 521

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
                  P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P   K
Sbjct: 522  QRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEK 581

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            ++ TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLTDN   + 
Sbjct: 582  IIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHT 641

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 642  AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 701

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FV S+ P+VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+P
Sbjct: 702  FVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSP 761

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 762  ATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKA 821

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSS
Sbjct: 822  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSS 881

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EFS                PVE+  T LDDF+E L
Sbjct: 882  AFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREEL 941

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEF
Sbjct: 942  HDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEF 1001

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSP
Sbjct: 1002 RAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSP 1061

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP
Sbjct: 1062 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1121

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1122 NNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1181

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDD
Sbjct: 1182 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDD 1241

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1242 CAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1301

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAHLHQVTVRDLVKFGG
Sbjct: 1302 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAHLHQVTVRDLVKFGG 1361

Query: 72   SPFL 61
            SPFL
Sbjct: 1362 SPFL 1365


>gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1387

 Score = 2417 bits (6265), Expect = 0.0
 Identities = 1189/1384 (85%), Positives = 1252/1384 (90%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVFSQLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHP
Sbjct: 1    MSNVRNVFSQLTDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKA+ESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAVESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH+YDQLEWLTVGHLTA  QPTITA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHRYDQLEWLTVGHLTAPGQPTITA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTP RRTF T++HYVTVP IFLPE YNCRTPISKT MMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPARRTFATSDHYVTVPQIFLPEDYNCRTPISKTTMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF+DVLSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFQDVLSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QRLLRPLR+D QRVLQFF+GRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF N
Sbjct: 361  NLLQRLLRPLRADFQRVLQFFQGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKN 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNP+DADT R F++F+  +      T+  +LE +AE+   HT LKV    L  
Sbjct: 421  PFTQPQPVNPEDADTSRGFQDFTRATTPKLQPTVEATLEATAESSDHHTQLKVLCDTLPE 480

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
            +QL A+H LG+ R GGPLLP  T      E           + AS A    +  D  P  
Sbjct: 481  KQLEAIHALGHLRCGGPLLPAPTQSCSPAEPCPDLPPSPVKSTASPASPDPNVLDAQPTT 540

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
              P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD RDLP+ATLP HW    L  
Sbjct: 541  QAPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTRDLPRATLPPHWQGHDLES 600

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +LTTLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT+N  A+L
Sbjct: 601  ILTTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQAWKETQTMLTENTQADL 660

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQNP LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 661  AISVIHGAGGSGKSQALQTLLRQNPSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 720

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FV S SP+VIFDDYGKLPQGY+EAFA+THA+LEL ILTGDPRQSTHHE+NEEALISKL P
Sbjct: 721  FVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELAILTGDPRQSTHHESNEEALISKLPP 780

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTI+S LSRYYINATHRNSK+LANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLVKKA
Sbjct: 781  ATTIYSTLSRYYINATHRNSKYLANKLGVYSANSCPLNVTYGFQPLPGMHLLVPSLVKKA 840

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTD GHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 841  AFTDVGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 900

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF                 PVE+  TTLDDFKE L
Sbjct: 901  AFWEKLEATPYLKTFLSLVREDKITEFQAPEDAPKPVTPPVTHFPVEEPATTLDDFKEEL 960

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIFT   GHTNCVQ DDPT QLFSHQQAKDEALLWETIKARLTISTPEAN++EF
Sbjct: 961  HDKFDREIFTSDRGHTNCVQTDDPTIQLFSHQQAKDEALLWETIKARLTISTPEANIDEF 1020

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILWANYH+AM LPKEQP+FSEDLWTRCAEEVQNTYLKKS++Q+KGGERRQSP
Sbjct: 1021 RAKKDLGDILWANYHRAMGLPKEQPDFSEDLWTRCAEEVQNTYLKKSLAQLKGGERRQSP 1080

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1081 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALGP 1140

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1141 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1200

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1201 VIEGYLDIKLSPKIFMGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1260

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1261 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1320

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQ+KAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1321 ELAKAQRKAGVKDAIANVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1380

Query: 72   SPFL 61
            SPFL
Sbjct: 1381 SPFL 1384


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2398 bits (6214), Expect = 0.0
 Identities = 1190/1388 (85%), Positives = 1249/1388 (89%), Gaps = 4/1388 (0%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   + T+       +LE  AE    H SL +    L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQ 2605
             QL ALHELGNTR GGPLLPK    +T  E   +          P + +        T  
Sbjct: 476  HQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTT------QTLD 529

Query: 2604 VPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEP 2425
            +P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P
Sbjct: 530  LPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGP 589

Query: 2424 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 2245
             + ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML +N 
Sbjct: 590  DMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENS 649

Query: 2244 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 2065
              NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRT
Sbjct: 650  QTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 709

Query: 2064 FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 1885
            FERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALIS
Sbjct: 710  FERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALIS 769

Query: 1884 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1705
            KL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPGLHLLVPSL
Sbjct: 770  KLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSL 829

Query: 1704 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1525
            VKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN
Sbjct: 830  VKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 889

Query: 1524 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDF 1345
            AQSSAFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDF
Sbjct: 890  AQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDF 949

Query: 1344 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1165
            KE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEAN
Sbjct: 950  KEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEAN 1009

Query: 1164 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 985
            L EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGER
Sbjct: 1010 LAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGER 1069

Query: 984  RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 805
            RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1070 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRE 1129

Query: 804  ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 625
            ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN
Sbjct: 1130 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 1189

Query: 624  LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 445
            LPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIY
Sbjct: 1190 LPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIY 1249

Query: 444  AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 265
            AGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL
Sbjct: 1250 AGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 1309

Query: 264  HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLV 85
            HASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLV
Sbjct: 1310 HASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLV 1369

Query: 84   KFGGSPFL 61
            KFGGSPFL
Sbjct: 1370 KFGGSPFL 1377


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2397 bits (6212), Expect = 0.0
 Identities = 1190/1384 (85%), Positives = 1245/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H SL +    L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLPK  P +  R                        +D +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + +
Sbjct: 534  QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NL
Sbjct: 594  ILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774  ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDFKE L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954  RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            S FL
Sbjct: 1374 SSFL 1377


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2393 bits (6202), Expect = 0.0
 Identities = 1188/1384 (85%), Positives = 1244/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H SL +  + L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDEHQSLSLKCSTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLPK  P +  R                        +D +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + +
Sbjct: 534  QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NL
Sbjct: 594  ILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774  ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDFKE L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954  RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            S FL
Sbjct: 1374 SSFL 1377


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2393 bits (6201), Expect = 0.0
 Identities = 1188/1384 (85%), Positives = 1244/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H SL +  + L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLPK  P +  R                        +D +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + +
Sbjct: 534  QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NL
Sbjct: 594  ILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774  ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDFKE L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954  RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            S FL
Sbjct: 1374 SSFL 1377


>emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2392 bits (6200), Expect = 0.0
 Identities = 1179/1384 (85%), Positives = 1247/1384 (90%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +
Sbjct: 361  NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T  +F+ F   +       +   LE  AE    H SL++    LS 
Sbjct: 421  PFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETILEQQAETPDEHQSLRLDCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLP+        E               +  N       +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPNLPSP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +
Sbjct: 534  QDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQ 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   NL
Sbjct: 594  IISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKA
Sbjct: 774  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVRED++AEFS                PVED  TTLDDF+E L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EF
Sbjct: 954  QDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            SPFL
Sbjct: 1374 SPFL 1377


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2392 bits (6198), Expect = 0.0
 Identities = 1187/1384 (85%), Positives = 1243/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H SL +    L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLPK  P +  R                        +D +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + +
Sbjct: 534  QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NL
Sbjct: 594  ILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774  ATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDFKE L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954  RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            S FL
Sbjct: 1374 SSFL 1377


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2390 bits (6195), Expect = 0.0
 Identities = 1187/1384 (85%), Positives = 1243/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H SL +  + L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R G PLLPK  P +  R                        +D +P  
Sbjct: 476  HQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + +
Sbjct: 534  QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NL
Sbjct: 594  ILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774  ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDFKE L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954  RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            S FL
Sbjct: 1374 SSFL 1377


>gb|AMY62703.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
 gb|AMY62708.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2390 bits (6195), Expect = 0.0
 Identities = 1176/1384 (84%), Positives = 1245/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA   PT+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLPTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +
Sbjct: 361  NLLQRILRPLTSSATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T  +F+ F   +       +   LE  AE    H SL++    LS 
Sbjct: 421  PFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETILEQQAETPDEHQSLRLDCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALH LGN R GGPLLP+        E               +  N       +P  
Sbjct: 476  HQLWALHALGNARCGGPLLPQRPDTSTAVEPCPDLPPETHAAPEPSQRNT--QAPNLPSP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +
Sbjct: 534  QDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQ 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   N+
Sbjct: 594  IISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNV 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKA
Sbjct: 774  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHK STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSS
Sbjct: 834  AFTDAGHKASTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVRED++AEFS                PVED  TTLDDF+E L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EF
Sbjct: 954  QDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            SPFL
Sbjct: 1374 SPFL 1377


>gb|AMY62723.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2389 bits (6192), Expect = 0.0
 Identities = 1175/1384 (84%), Positives = 1247/1384 (90%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +
Sbjct: 361  NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T  +F+ F   +       +   LE SAE    H SL++    LS 
Sbjct: 421  PFARPQPVNPDDAETTHSFQAFCQAT-----AAVGTILEQSAETPDEHQSLRLNCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGNTR GGPLLP+        E               +  N       +P  
Sbjct: 476  HQLWALHELGNTRCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPDLPSP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +
Sbjct: 534  QDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQ 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +++TLRS+NR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   NL
Sbjct: 594  IISTLRSINRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            A+SVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AVSVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHA+LELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHANLELVILTGDPRQSTHHEANEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL+KKA
Sbjct: 774  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLMKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLD+DTTMCTKEVLYTALSRAVDSIHF+NSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDSDTTMCTKEVLYTALSRAVDSIHFINSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVRED++AEFS                PVED  TTLDDF+E L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF +AHG+TNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS PEANL EF
Sbjct: 954  QDKFDREIFNQAHGYTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            SPFL
Sbjct: 1374 SPFL 1377


>gb|ANY93292.1| RdRp [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2389 bits (6191), Expect = 0.0
 Identities = 1177/1384 (85%), Positives = 1246/1384 (90%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPT+IAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTSIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +
Sbjct: 361  NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T  +F+ F   +       +   LE  AE    H SL++    LS 
Sbjct: 421  PFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETILEQQAETPDEHQSLRLDCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLP+        E               +  N       +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPNLPSP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +
Sbjct: 534  QDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQ 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   NL
Sbjct: 594  IISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKA
Sbjct: 774  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVRED++AEFS                PVED  TTLDDF+E L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EF
Sbjct: 954  QDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            SPFL
Sbjct: 1374 SPFL 1377


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2387 bits (6186), Expect = 0.0
 Identities = 1185/1384 (85%), Positives = 1242/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TA
Sbjct: 181  EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361  NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H SL +    L  
Sbjct: 421  PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLPK  P +  R                        +D +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P +++
Sbjct: 534  QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMAR 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT+N   NL
Sbjct: 594  ILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PGLHLLVPSLVKKA
Sbjct: 774  ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF+                PVED  TTLDDFKE L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954  RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            S FL
Sbjct: 1374 SSFL 1377


>gb|AMY62718.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2384 bits (6179), Expect = 0.0
 Identities = 1175/1384 (84%), Positives = 1242/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +
Sbjct: 361  NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T  +F+ F   +       +   LE  AE    H SL++    LS 
Sbjct: 421  PFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETILEQQAETPDEHXSLRLDCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLP+        E               +  N       +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPNLPSP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +
Sbjct: 534  QDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQ 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   NL
Sbjct: 594  IISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL KKA
Sbjct: 774  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLXKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHK STYAGCQGITAP+VQILLDNDTTMC KEVLYTALSRAVDSIHF+NSNAQSS
Sbjct: 834  AFTDAGHKASTYAGCQGITAPRVQILLDNDTTMCXKEVLYTALSRAVDSIHFINSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVRED++AEFS                PVED  TTLDDF+E L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EF
Sbjct: 954  QDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP Q HLHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQXHLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            SPFL
Sbjct: 1374 SPFL 1377


>gb|AMY62713.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2384 bits (6178), Expect = 0.0
 Identities = 1175/1384 (84%), Positives = 1244/1384 (89%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINS P
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSXP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR V+T LRGPPGF +
Sbjct: 361  NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVDTLLRGPPGFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T  +F+ F   +       +   LE  AE    H SL++    LS 
Sbjct: 421  PFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETILEQQAETPDEHQSLRLDCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL ALHELGN R GGPLLP+        E               +  N       +P  
Sbjct: 476  HQLWALHELGNARCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPNLPSP 533

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +
Sbjct: 534  QDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQ 593

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   NL
Sbjct: 594  IISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNL 653

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654  AISVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL P
Sbjct: 714  FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPP 773

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKA
Sbjct: 774  ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKA 833

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHK STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSS
Sbjct: 834  AFTDAGHKASTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSS 893

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVRED++AEFS                PVED  TTLDDF+E L
Sbjct: 894  AFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREEL 953

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EF
Sbjct: 954  QDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEF 1013

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSP 1073

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDD 1253

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1373

Query: 72   SPFL 61
            SPFL
Sbjct: 1374 SPFL 1377


>gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 2383 bits (6175), Expect = 0.0
 Identities = 1175/1385 (84%), Positives = 1246/1385 (89%), Gaps = 1/1385 (0%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1    MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TA
Sbjct: 181  EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSE TLLVNYFE TASLDSHTCFED+LSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSETTLLVNYFELTASLDSHTCFEDILSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR V+T LRGPP F +
Sbjct: 361  NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVHTLLRGPPWFDS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNPDDA+T   F+ F   +       +   LE  AE    H SL++    LS 
Sbjct: 421  PFTRPQPVNPDDAETTHIFQAFCQAA-----AAVETILEQQAETPEEHQSLRLDCPTLSE 475

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGD-HTDQVPV 2596
             QL +LHELGN R GGPLLP+                    T A+   +Q +     +P 
Sbjct: 476  HQLWSLHELGNARCGGPLLPQ---RPDTATVVEPCPDLPPETHAAPEPSQRNTQAPNLPS 532

Query: 2595 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLS 2416
              DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW +P + 
Sbjct: 533  PQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQDPDME 592

Query: 2415 KVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN 2236
            ++++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++   N
Sbjct: 593  QIISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTN 652

Query: 2235 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 2056
            LAISVIHGAGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 2055 AFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 1876
            AFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL 
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLP 772

Query: 1875 PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKK 1696
            PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KK
Sbjct: 773  PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKK 832

Query: 1695 AAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 1516
            AAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQS
Sbjct: 833  AAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQS 892

Query: 1515 SAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKES 1336
            SAFWEKLEATPYLKTFLSLVREDK+AEFS                PVED  TTLDDF+E 
Sbjct: 893  SAFWEKLEATPYLKTFLSLVREDKVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREE 952

Query: 1335 LSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEE 1156
            L DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL E
Sbjct: 953  LQDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAE 1012

Query: 1155 FRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQS 976
            FRAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQS
Sbjct: 1013 FRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQS 1072

Query: 975  PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALS 796
            PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 
Sbjct: 1073 PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALR 1132

Query: 795  PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 616
            PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1133 PNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192

Query: 615  WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGD 436
            WVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGD
Sbjct: 1193 WVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGD 1252

Query: 435  DCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 256
            DCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS
Sbjct: 1253 DCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 1312

Query: 255  LELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFG 76
            LELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFG
Sbjct: 1313 LELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFG 1372

Query: 75   GSPFL 61
            GSPFL
Sbjct: 1373 GSPFL 1377


>gb|AVL84357.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1388

 Score = 2365 bits (6130), Expect = 0.0
 Identities = 1165/1385 (84%), Positives = 1231/1385 (88%), Gaps = 1/1385 (0%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVFSQLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHP
Sbjct: 1    MSNVRNVFSQLTDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTH D FLNAHV
Sbjct: 61   YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHSDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+++RLENIPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIVNRLENIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            EALYR RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG LT+  QPTITA
Sbjct: 181  EALYRPRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGRLTSPGQPTITA 240

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNYLTPERRTF T +HYVTVP IFLPE YNCRTPISKT MMQMF
Sbjct: 241  QRLETKGANHLFIFQRGNYLTPERRTFATNDHYVTVPHIFLPENYNCRTPISKTTMMQMF 300

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDVLSG
Sbjct: 301  FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDVLSG 360

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
            NL+QRLLRPLRSD QR+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T LRGPPGF +
Sbjct: 361  NLLQRLLRPLRSDFQRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVCTTLRGPPGFKS 420

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            P T+P PVNP+DADT R+F++F+ T+  S   T+ ++L+ +AE L  HT LKV    LS 
Sbjct: 421  PLTRPQPVNPEDADTSRSFQDFTRTTAASPKPTVEETLDATAERLDHHTQLKVHCDTLSE 480

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL A+H LG+ R GGPLLP++TP     E            +           D  P  
Sbjct: 481  RQLEAIHSLGHLRCGGPLLPELTPRHAPAEPCPDLPPSPTKGQTETPSPSTSGPDLQPTT 540

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
              P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD R+LP+ATLP HW    L+ 
Sbjct: 541  QAPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTRELPRATLPAHWQGSNLTS 600

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +LTTLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQT+L +N    L
Sbjct: 601  ILTTLRSLNRFPTPWIPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTLLAENTQVEL 660

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            A+SVIHGAGGSGKSQALQTLLRQ+P LPIEV+LPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 661  ALSVIHGAGGSGKSQALQTLLRQDPSLPIEVILPTNELRLDWLKKLPHNPPEQFRTFERA 720

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FVCS+SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTG P+              K +P
Sbjct: 721  FVCSQSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGGPQAVHAPRVQRGGAHLKASP 780

Query: 1872 -ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKK 1696
                     SRYYINATHRNSKFLANKLGVYS+NSCPL VTYGFQP PGLHLLVPSL+KK
Sbjct: 781  RPQPSIQPFSRYYINATHRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKK 840

Query: 1695 AAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 1516
            AAFTDAGHKVSTYAGCQGITAPKVQILLD+DTTMCTKEVLYTALSRAVDSIHFVNSNAQS
Sbjct: 841  AAFTDAGHKVSTYAGCQGITAPKVQILLDSDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 900

Query: 1515 SAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKES 1336
            SAFWEKLEATPYLKTFLSLVREDKI EF                 PVE+  TTLDDFKE 
Sbjct: 901  SAFWEKLEATPYLKTFLSLVREDKITEFQAPEGDPKPVAPPVTHFPVEEPATTLDDFKEE 960

Query: 1335 LSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEE 1156
            L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLW TIKARLTISTPEAN+EE
Sbjct: 961  LQDKFDREIFTNDRGHTNCVQTDDPTTQLFSHQQAKDEALLWGTIKARLTISTPEANVEE 1020

Query: 1155 FRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQS 976
            FRAKKDLGDILW NYH+AM LPKEQP+FSEDLWTRCAEEVQNTYLKK+++Q+KGGERRQS
Sbjct: 1021 FRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWTRCAEEVQNTYLKKTVAQLKGGERRQS 1080

Query: 975  PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALS 796
            PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 
Sbjct: 1081 PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALC 1140

Query: 795  PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 616
            PNNIM+NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1141 PNNIMVNCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1200

Query: 615  WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGD 436
            WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE NIAYTHTRF+IPEGTAQIYAGD
Sbjct: 1201 WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTERNIAYTHTRFDIPEGTAQIYAGD 1260

Query: 435  DCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 256
            DCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS
Sbjct: 1261 DCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 1320

Query: 255  LELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFG 76
            LELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFG
Sbjct: 1321 LELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFG 1380

Query: 75   GSPFL 61
            GSPFL
Sbjct: 1381 GSPFL 1385


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
 sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase
 emb|CAA79761.1| 156K-protein [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 2319 bits (6010), Expect = 0.0
 Identities = 1151/1384 (83%), Positives = 1225/1384 (88%)
 Frame = -3

Query: 4212 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 4033
            MSNVRNVFSQLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHP
Sbjct: 1    MSNVRNVFSQLTDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHP 60

Query: 4032 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 3853
            YAIT HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHV
Sbjct: 61   YAITSHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHV 120

Query: 3852 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 3673
            EPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPP
Sbjct: 121  EPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPP 180

Query: 3672 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 3493
            E     RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA   PT+TA
Sbjct: 181  EPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTA 239

Query: 3492 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 3313
            QRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMF
Sbjct: 240  QRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMF 299

Query: 3312 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 3133
            FYIKS KEA+      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV   
Sbjct: 300  FYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PP 358

Query: 3132 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 2953
             L  +        I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF N
Sbjct: 359  KLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKN 418

Query: 2952 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 2773
            PFT+P PVNP+DAD    F++FS  + ++   T+   LE SAE+   HT LKV  + LS 
Sbjct: 419  PFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSE 478

Query: 2772 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 2593
             QL A+H LG++R GGPLLP++T +    E           ++AS A +     D  P  
Sbjct: 479  GQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTA 538

Query: 2592 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 2413
             +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW    L +
Sbjct: 539  QNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLER 598

Query: 2412 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 2233
            +L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N    L
Sbjct: 599  ILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTEL 658

Query: 2232 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2053
            AISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 659  AISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 718

Query: 2052 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 1873
            FV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 719  FVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPP 778

Query: 1872 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 1693
            ATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PGLHLLVPSL+KKA
Sbjct: 779  ATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKA 838

Query: 1692 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 1513
            AFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSS
Sbjct: 839  AFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSS 898

Query: 1512 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKMTTLDDFKESL 1333
            AFWEKLEATPYLKTFLSLVREDKI EF                 PVE+  TTLDDFKE L
Sbjct: 899  AFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEEL 958

Query: 1332 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1153
             DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEF
Sbjct: 959  RDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEF 1018

Query: 1152 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 973
            RAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSP
Sbjct: 1019 RAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSP 1078

Query: 972  DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 793
            DFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP
Sbjct: 1079 DFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1138

Query: 792  NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 613
            NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1139 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1198

Query: 612  VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 433
            VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1199 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1258

Query: 432  CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 253
            CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1259 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1318

Query: 252  ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 73
            ELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1319 ELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1378

Query: 72   SPFL 61
            SPFL
Sbjct: 1379 SPFL 1382