BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00003340
         (1280 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PIN11531.1| RNA-binding protein musashi/mRNA cleavage and pol...    66   5e-08

>gb|PIN11531.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation factor
            I complex, subunit HRP1 [Handroanthus impetiginosus]
          Length = 427

 Score = 66.2 bits (160), Expect = 5e-08
 Identities = 67/218 (30%), Positives = 68/218 (31%), Gaps = 7/218 (3%)
 Frame = -1

Query: 1280 NSSSYDGRMESNRYTXXXXXXXXXXXXXXXXYNVPGYGYGPTSXXXXXXXXXXXXXXXXX 1101
            NSSSYDGRMESNRY                 YN PGYGYGPT+                 
Sbjct: 213  NSSSYDGRMESNRYMQTQNAGAGYPSYGSSGYNAPGYGYGPTNNGMGYGYGNYGGGNPGY 272

Query: 1100 XXXXXXXXXGLPN-----AQRNSWGSQVAS--GYXXXXXXXXXXXXXXXXXXXXXXSPTX 942
                       PN     AQRN WGSQ  S  GY                      SPT 
Sbjct: 273  GGPAGGGYPNAPNAGYGTAQRNPWGSQAPSGYGYGSSQWGTSGVGAPGAGGAGTGQSPTG 332

Query: 941  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRAGSGPNGSSPAVDPQXXXXXXXXXXXX 762
                                           G AGSGPNGSSPA D              
Sbjct: 333  ASGYGNQGYGYGGYGGNDGAYGNQAAYGAVGGHAGSGPNGSSPAGD----TGGYMGGGYG 388

Query: 761  XXXXXXXXXXXGWRSDPSQASXXXXXXXXGAST*QALQ 648
                       GWRSD SQ S         AST QA Q
Sbjct: 389  DGSGNSGYGNSGWRSDSSQGSGNYGGGYGSASTRQAPQ 426