BLASTX nr result
ID: Rehmannia31_contig00002880
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia31_contig00002880
(409 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PON67291.1| U6 snRNA-associated Sm-like protein LSm [Paraspon... 66 2e-11
ref|XP_022885900.1| sm-like protein LSM2 [Olea europaea var. syl... 66 2e-11
ref|XP_015888400.1| PREDICTED: sm-like protein LSM2 [Ziziphus ju... 66 2e-11
ref|XP_008372267.1| PREDICTED: sm-like protein LSM2 [Malus domes... 66 2e-11
ref|XP_004493646.1| PREDICTED: sm-like protein LSM2 [Cicer ariet... 66 2e-11
ref|XP_004294156.1| PREDICTED: sm-like protein LSM2 [Fragaria ve... 66 2e-11
ref|XP_007212296.1| sm-like protein LSM2 [Prunus persica] >gi|64... 66 2e-11
ref|XP_006384992.1| hypothetical protein POPTR_0004s22870g [Popu... 65 2e-11
gb|ABK93357.1| unknown [Populus trichocarpa] 65 2e-11
gb|KZV18515.1| hypothetical protein F511_21694 [Dorcoceras hygro... 66 2e-11
gb|KYP70676.1| U6 snRNA-associated Sm-like protein LSm2, partial... 65 3e-11
ref|XP_023744031.1| sm-like protein LSM2 [Lactuca sativa] >gi|13... 65 3e-11
ref|XP_019188574.1| PREDICTED: sm-like protein LSM2 [Ipomoea nil] 65 3e-11
ref|XP_016443997.1| PREDICTED: sm-like protein LSM2 [Nicotiana t... 65 3e-11
ref|XP_009759372.1| PREDICTED: U6 snRNA-associated Sm-like prote... 65 3e-11
ref|XP_009613566.1| PREDICTED: sm-like protein LSM2 [Nicotiana t... 65 3e-11
ref|XP_013449697.1| u6 snRNA-associated-like-Smprotein [Medicago... 65 3e-11
ref|XP_003625831.1| u6 snRNA-associated-like-Smprotein [Medicago... 65 3e-11
ref|NP_001236540.1| Sm_like superfamily protein [Glycine max] >g... 65 3e-11
emb|CDP03596.1| unnamed protein product [Coffea canephora] 65 4e-11
>gb|PON67291.1| U6 snRNA-associated Sm-like protein LSm [Parasponia andersonii]
gb|POO03217.1| U6 snRNA-associated Sm-like protein LSm [Trema orientalis]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_022885900.1| sm-like protein LSM2 [Olea europaea var. sylvestris]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_015888400.1| PREDICTED: sm-like protein LSM2 [Ziziphus jujuba]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_008372267.1| PREDICTED: sm-like protein LSM2 [Malus domestica]
ref|XP_008383008.1| PREDICTED: sm-like protein LSM2 [Malus domestica]
ref|XP_009354825.1| PREDICTED: sm-like protein LSM2 [Pyrus x bretschneideri]
ref|XP_009344313.1| PREDICTED: sm-like protein LSM2 [Pyrus x bretschneideri]
ref|XP_009347993.1| PREDICTED: sm-like protein LSM2 [Pyrus x bretschneideri]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_004493646.1| PREDICTED: sm-like protein LSM2 [Cicer arietinum]
ref|XP_011079802.1| sm-like protein LSM2 [Sesamum indicum]
ref|XP_012569299.1| PREDICTED: sm-like protein LSM2 [Cicer arietinum]
ref|XP_012832661.1| PREDICTED: sm-like protein LSM2 [Erythranthe guttata]
ref|XP_016204855.1| sm-like protein LSM2 isoform X3 [Arachis ipaensis]
ref|XP_018839017.1| PREDICTED: sm-like protein LSM2 [Juglans regia]
ref|XP_018847438.1| PREDICTED: sm-like protein LSM2 [Juglans regia]
ref|XP_020982229.1| sm-like protein LSM2 [Arachis duranensis]
gb|EYU46622.1| hypothetical protein MIMGU_mgv1a017110mg [Erythranthe guttata]
gb|OVA20082.1| Ribonucleoprotein LSM domain [Macleaya cordata]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_004294156.1| PREDICTED: sm-like protein LSM2 [Fragaria vesca subsp. vesca]
ref|XP_024017947.1| sm-like protein LSM2 [Morus notabilis]
ref|XP_024198720.1| sm-like protein LSM2 [Rosa chinensis]
gb|PRQ30702.1| putative U6 snRNA-associated Sm-like protein LSm2 [Rosa chinensis]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_007212296.1| sm-like protein LSM2 [Prunus persica]
ref|XP_008226258.1| PREDICTED: sm-like protein LSM2 [Prunus mume]
ref|XP_021831406.1| sm-like protein LSM2 [Prunus avium]
gb|ONI12139.1| hypothetical protein PRUPE_4G147700 [Prunus persica]
Length = 93
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDVELLHDATRREARGG 93
>ref|XP_006384992.1| hypothetical protein POPTR_0004s22870g [Populus trichocarpa]
Length = 52
Score = 64.7 bits (156), Expect = 2e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDV+LLHDATRREARGG
Sbjct: 22 RGSVVRYVQLPPEGVDVDLLHDATRREARGG 52
>gb|ABK93357.1| unknown [Populus trichocarpa]
Length = 54
Score = 64.7 bits (156), Expect = 2e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDV+LLHDATRREARGG
Sbjct: 24 RGSVVRYVQLPPEGVDVDLLHDATRREARGG 54
>gb|KZV18515.1| hypothetical protein F511_21694 [Dorcoceras hygrometricum]
Length = 97
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVDVELLHDATRREARGG
Sbjct: 67 RGSVVRYVQLPPEGVDVELLHDATRREARGG 97
>gb|KYP70676.1| U6 snRNA-associated Sm-like protein LSm2, partial [Cajanus cajan]
Length = 92
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 62 RGSVVRYVQLPPEGVDIELLHDATRREARGG 92
>ref|XP_023744031.1| sm-like protein LSM2 [Lactuca sativa]
gb|PLY96540.1| hypothetical protein LSAT_5X187481 [Lactuca sativa]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|XP_019188574.1| PREDICTED: sm-like protein LSM2 [Ipomoea nil]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|XP_016443997.1| PREDICTED: sm-like protein LSM2 [Nicotiana tabacum]
ref|XP_016443998.1| PREDICTED: sm-like protein LSM2 [Nicotiana tabacum]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|XP_009759372.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nicotiana
sylvestris]
ref|XP_016473652.1| PREDICTED: sm-like protein LSM2 [Nicotiana tabacum]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|XP_009613566.1| PREDICTED: sm-like protein LSM2 [Nicotiana tomentosiformis]
ref|XP_018629817.1| PREDICTED: sm-like protein LSM2 [Nicotiana tomentosiformis]
ref|XP_019243322.1| PREDICTED: sm-like protein LSM2 [Nicotiana attenuata]
gb|OIT04590.1| sm-like protein lsm2 [Nicotiana attenuata]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|XP_013449697.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula]
gb|KEH23725.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|XP_003625831.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula]
ref|XP_017631279.1| PREDICTED: sm-like protein LSM2 [Gossypium arboreum]
ref|XP_020213999.1| sm-like protein LSM2 [Cajanus cajan]
ref|XP_023896479.1| sm-like protein LSM2 [Quercus suber]
gb|AES82049.1| u6 snRNA-associated-like-Smprotein [Medicago truncatula]
gb|AFK47860.1| unknown [Lotus japonicus]
gb|KHG23816.1| U6 snRNA-associated Sm-like protein LSm2 [Gossypium arboreum]
gb|POE55885.1| sm-like protein lsm2 [Quercus suber]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>ref|NP_001236540.1| Sm_like superfamily protein [Glycine max]
ref|XP_006576885.1| PREDICTED: sm-like protein LSM2 [Glycine max]
gb|ACU13636.1| unknown [Glycine max]
gb|KHN19868.1| U6 snRNA-associated Sm-like protein LSm2 [Glycine soja]
gb|KHN45376.1| U6 snRNA-associated Sm-like protein LSm2 [Glycine soja]
gb|KRG95475.1| hypothetical protein GLYMA_19G153500 [Glycine max]
gb|KRH67157.1| hypothetical protein GLYMA_03G150900 [Glycine max]
Length = 93
Score = 65.5 bits (158), Expect = 3e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 63 RGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>emb|CDP03596.1| unnamed protein product [Coffea canephora]
Length = 113
Score = 65.5 bits (158), Expect = 4e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 3 RGSVVRYVQLPPEGVDVELLHDATRREARGG 95
RGSVVRYVQLPPEGVD+ELLHDATRREARGG
Sbjct: 83 RGSVVRYVQLPPEGVDIELLHDATRREARGG 113