BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00001138
         (1393 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   553   0.0  
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...   545   e-179
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    540   e-177
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...   526   e-171
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         463   e-147
gb|KYP42945.1| Retrovirus-related Pol polyprotein from transposo...   435   e-146
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]   454   e-145
gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposo...   446   e-144
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...   452   e-143
emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]   444   e-143
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   447   e-141
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]      446   e-141
gb|KYP73265.1| Retrovirus-related Pol polyprotein from transposo...   429   e-140
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           444   e-140
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo...   434   e-136
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo...   434   e-136
gb|KYP54197.1| Retrovirus-related Pol polyprotein from transposo...   410   e-136
emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]   430   e-135
emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]   411   e-128
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]   411   e-128

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score =  553 bits (1425), Expect = 0.0
 Identities = 261/407 (64%), Positives = 314/407 (77%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +H TP +D F  Y AGDFG VKM                KTNVG T+ LKDVRHVPDLR+
Sbjct: 302  HHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRM 361

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+SGIALD+ GY+++F    W+L++G++V+A+G   GTLY+T+ +IC   LN A+ E S
Sbjct: 362  NLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEIS 421

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
             +LWH+R+GHMSEKGL  L KK LI+  K   + PC++CLFGKQ                
Sbjct: 422  VDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNIL 481

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              V+SDVCGP+E+ES+GGNKYF+TFIDDASRKLWVY LKTKDQVF+ F+ FH +VERETG
Sbjct: 482  DLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETG 541

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLK LRSDNGGEYTS+ F+ YC ++GIRHEKTVP TPQHNGVAERMNRTI+E+VRSML 
Sbjct: 542  RKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLR 601

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
            MAKLPK FWGEAV+ ACYLINRSPSVPL FE+PE++W+ K+ SYSHL+VFGC A+AHV K
Sbjct: 602  MAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPK 661

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESK 1223
            E R KLD ++ PCIFIGYGDEEFGYRLWDP +KKVIRSRDVVF ES+
Sbjct: 662  EQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESE 708


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  545 bits (1404), Expect = e-179
 Identities = 252/439 (57%), Positives = 316/439 (71%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            YH  P ++YFTTY+ GDFG V M                +T VG T+ LKDVRH+PD+RL
Sbjct: 295  YHCVPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDIHLQTGVGCTLILKDVRHIPDIRL 354

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LDK+GY++    G WKL++G++VVA+G +C TLYKT+VK+C   LN  E +AS
Sbjct: 355  NLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLYKTYVKVCKGQLNAVENDAS 414

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
             NLWH+RL H+SEKGL  L K+ LI   K   L+PC++C+FGK                 
Sbjct: 415  PNLWHRRLAHISEKGLQLLAKQSLIPQAKGDFLNPCDYCVFGKHHRVSFKKSSNRKKNKL 474

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VHSDVCGP+EVESLGGNKYF+TFIDDASRK WVY L+ K QVF+ F+ FH MVERETG
Sbjct: 475  ELVHSDVCGPMEVESLGGNKYFVTFIDDASRKTWVYLLQAKSQVFQCFQQFHAMVERETG 534

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             +LKC+R+DNGGEY SK F  YC  YGIRHEKTVP TPQHNG+AERMNRTI+E+VR ML 
Sbjct: 535  KQLKCIRTDNGGEYISKEFKDYCSKYGIRHEKTVPGTPQHNGIAERMNRTIVEKVRCMLR 594

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
            MAKLPKPFWGEAV+ A YLINR PSVPL F++PE++W+GK+ SYSHL+VFGC A+ HV K
Sbjct: 595  MAKLPKPFWGEAVQTAVYLINRLPSVPLGFDIPERVWAGKEVSYSHLKVFGCKAFMHVPK 654

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1262
            E R KLD +  PC+F+GYG+EEFGY+LWDP+ K+++RSRDV+FHE +T+ED++    ++ 
Sbjct: 655  EQRSKLDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSRDVIFHEHETIEDLKGGEAAKP 714

Query: 1263 SNIGAQISDAAPEPFVRDG 1319
               G   +   P     DG
Sbjct: 715  MEDGVNPTSHVPSECATDG 733


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  540 bits (1391), Expect = e-177
 Identities = 256/422 (60%), Positives = 311/422 (73%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            YH TP +D F  Y AGD+G VKM                KTNVG T+ LKDVRHVPDLR+
Sbjct: 303  YHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVPDLRM 362

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+SGIALD+ GY+N+F    W+L++G +V+A+G   GTLY+T+ +IC   LN A +E S
Sbjct: 363  NLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAEICQGELNAAHEENS 422

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
             +LWH+R+GH SEKGL  L KK LI+  K   + PCN+ LFGKQ                
Sbjct: 423  ADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHRVSFQTSSERKSNIL 482

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              V+SDVCGP+E+ES+GGNKYF+TFIDDASRKLWVY  + KDQVF+ F+ FH +VERETG
Sbjct: 483  DLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQVFQKFHALVERETG 542

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             K K LR+DNGGEYTS+ F+ YC  +GIRHEKTVP TPQHNGVAERMNRTI+E+VRSML 
Sbjct: 543  RKRKRLRTDNGGEYTSREFEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLR 602

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
            MAKLPK FWGEAVR ACYLINRSPSVPL F++PE++W+ K+ SYSHL+VFGC A+AHV K
Sbjct: 603  MAKLPKTFWGEAVRTACYLINRSPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVPK 662

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1262
            E R KLD ++ PCIFIGYGDEEFGYRLWD  +KKVIRSRDV+F ES+     +    ++K
Sbjct: 663  EQRTKLDDKSVPCIFIGYGDEEFGYRLWDLVKKKVIRSRDVIFRESEVGTAADLSEKAKK 722

Query: 1263 SN 1268
             N
Sbjct: 723  KN 724


>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score =  526 bits (1354), Expect = e-171
 Identities = 251/434 (57%), Positives = 309/434 (71%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +H TPH +YFTTY+ GDFG VKM                +T++G+ + LKDVR+VP LRL
Sbjct: 304  FHATPHLEYFTTYQGGDFGRVKMGNDGYSKISGIGDICFETDLGNKLMLKDVRYVPGLRL 363

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD+QG+ +H     W+L++G++V+ARG +C TLYKT+ KIC   LN+A+ ++S
Sbjct: 364  NLMSTGVLDRQGFHHHGGDQKWRLTKGSLVIARGKMCCTLYKTYGKICKGELNVAD-DSS 422

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
             +LWH+RLGHMSEKGL  L KK LI   K  +LD C++CLFGKQ                
Sbjct: 423  PSLWHKRLGHMSEKGLQVLAKKSLIPFAKGTSLDSCDYCLFGKQHKVSFTRTFTRKENVL 482

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VHSDVCGP+EVES+G NKYF+T+IDDASRK+WVY LKTKDQVF+ FK FH MVERETG
Sbjct: 483  DLVHSDVCGPMEVESVGHNKYFVTYIDDASRKVWVYLLKTKDQVFQTFKEFHAMVERETG 542

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
              LKC+RSDNGGEYTS  F  YC  +GI+H KT+P TPQHNGVAERMNRTI+E+VRSML 
Sbjct: 543  RTLKCIRSDNGGEYTSNEFRDYCSKHGIKHVKTIPGTPQHNGVAERMNRTILEKVRSMLK 602

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             A L K FWGEA+  ACYLINR+P VPL  E PE +W+G+  SYSHLRVFGC A+AHV K
Sbjct: 603  TANLTKKFWGEAMTTACYLINRTPCVPLGLETPEGVWTGRSASYSHLRVFGCKAFAHVPK 662

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1262
            E R KLD +  PCIF+GYG+EE GYRLW+PK KK+ RSRDVVFHE +T+ D +K  +   
Sbjct: 663  EQRSKLDDKAMPCIFLGYGNEEMGYRLWNPKTKKLFRSRDVVFHEGQTIADFDKNEVEHA 722

Query: 1263 SNIGAQISDAAPEP 1304
              +    S    EP
Sbjct: 723  DQLTYDSSPLQEEP 736


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  463 bits (1192), Expect = e-147
 Identities = 227/428 (53%), Positives = 290/428 (67%), Gaps = 1/428 (0%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            YHVTP K++FT+Y  GDFG ++M                +T+ G+ + LK+V+H PD+RL
Sbjct: 297  YHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIRL 356

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD  G+   F  G WK+++G++VVARG+    LY     +  DS+N+ EKE +
Sbjct: 357  NLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSDDSVNVVEKECA 416

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
              LWH+RLGHMS KG+  L KK  ++  KEA LD C HCL GKQ+               
Sbjct: 417  SELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVHCLAGKQRRVSFMSHPPTRKSEP 476

Query: 543  XX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERET 719
               +HSDVCGP++V SLGG  YF+TFIDD SRKLWVY LK K  V   FK FH +VER+T
Sbjct: 477  LDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQT 536

Query: 720  GNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSML 899
            G KLKC+R+DNGGEY    FD YC+ YGIRH+KT P+ PQ NG+AERMNRTIMERVR ML
Sbjct: 537  GKKLKCIRTDNGGEYCGP-FDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCML 595

Query: 900  SMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVS 1079
              AKLP  FW EAV  A ++IN SP + L  EVP+K+W GKD SY HLRVFGC A+ HV 
Sbjct: 596  DDAKLPSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVP 655

Query: 1080 KELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQ 1259
            ++ R KLD++T  CIFIGYG +EFGYRL+DP EKK++RSRDVVF E++T+EDI+K    +
Sbjct: 656  RDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPE 715

Query: 1260 KSNIGAQI 1283
              + G+ +
Sbjct: 716  SRDSGSLV 723


>gb|KYP42945.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 497

 Score =  435 bits (1118), Expect = e-146
 Identities = 214/410 (52%), Positives = 279/410 (68%), Gaps = 1/410 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            HVTP K++FT+Y +GDFG +KM                +TN+G  + L+ V+H PD+R N
Sbjct: 89   HVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQLLLRGVKHAPDVRFN 148

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   LD  GYDNHF  G WKL++G +V+A G     LY T   +  DS+N  + EAS 
Sbjct: 149  LISLQILDDGGYDNHFGSGKWKLTKGNLVMAGGEKNSKLYWTKALVAKDSVNAMDMEAS- 207

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH+RL H+SE GL+ L KK+++   K   L+ C++C+ GKQ +               
Sbjct: 208  -LWHRRLSHISENGLNCLAKKDVLQGLKSVELEKCSYCMAGKQTRVFFKKHPPSRKLELL 266

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VHSDVCGPL+V++  G  YF+TFIDD SRKLWVY L  KDQV E FK FH +VER++G
Sbjct: 267  KLVHSDVCGPLKVKAFSGALYFVTFIDDCSRKLWVYALSRKDQVLEGFKQFHALVERQSG 326

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLK +R+DNGGEY    FD YCK +GI H+KT P+TPQ NG+AERMNRT++ERVR MLS
Sbjct: 327  KKLKRIRTDNGGEYCGP-FDVYCKKHGIAHKKTPPKTPQLNGLAERMNRTLLERVRCMLS 385

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             AKLPK FWGEA+    ++IN +P+V LN EVPEK+W GK+ SY HLRVFGC A+ H+ +
Sbjct: 386  DAKLPKHFWGEALYTVVHVINLTPTVILNSEVPEKIWFGKNASYDHLRVFGCKAFVHIPR 445

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTME 1232
            + R KLD +T  CIFIGYG++EF YR +DP EKK++RSRDV F E +T++
Sbjct: 446  DERSKLDTKTRQCIFIGYGEDEFVYRFYDPVEKKLVRSRDVQFMEDQTIK 495


>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
          Length = 1207

 Score =  454 bits (1168), Expect = e-145
 Identities = 214/428 (50%), Positives = 299/428 (69%), Gaps = 1/428 (0%)
 Frame = +3

Query: 24   DYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLNLLSGIA 203
            D+FT+Y +GDFG+V+M                +T+ G+ +TLK+V+H+PD+R+NL+S   
Sbjct: 189  DFFTSYTSGDFGSVRMGNDDSAKAIGMRNVRLETSNGTMLTLKNVKHIPDIRMNLISTGK 248

Query: 204  LDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQNLWHQR 383
            LD +G+ N F    WKL+RG+MV+A+G+   +LY    ++   S+N  + +++  LWH R
Sbjct: 249  LDDEGFYNIFRDSQWKLTRGSMVIAKGNKSSSLYLMQTRVIDSSINAVDDDSTFELWHNR 308

Query: 384  LGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXXXXVHSD 560
            LGHMSEKGL  L KK L++  K+ +L  C HCL GKQ +                 V+SD
Sbjct: 309  LGHMSEKGLMILAKKNLLSGMKKGSLKRCAHCLAGKQTRVAFKTLRYTRKPGMLDLVYSD 368

Query: 561  VCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETGNKLKCL 740
            VCGP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G KLKC+
Sbjct: 369  VCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCI 428

Query: 741  RSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLSMAKLPK 920
            R+DNGGEY+S  FD YC+ +GIRH+KT P+TPQ NG+AERMNRT++ERVR +LS ++LP+
Sbjct: 429  RTDNGGEYSSP-FDEYCRQHGIRHQKTSPKTPQLNGLAERMNRTLVERVRCLLSQSQLPR 487

Query: 921  PFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQKL 1100
             FWGEA+    +++N +P VPL F+VP+++WS  + SY HLRVFGC A+ H+ K+ R KL
Sbjct: 488  SFWGEALNTVVHVLNLTPCVPLEFDVPDRIWSKNEISYDHLRVFGCKAFVHIPKDERSKL 547

Query: 1101 DARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQKSNIGAQ 1280
            DA+T PC+FIGYG +E GYR +DP +KK++RSRDVVF E  T++DIEK T   +S     
Sbjct: 548  DAKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEK-TNPMESQHSGD 606

Query: 1281 ISDAAPEP 1304
            + D  P P
Sbjct: 607  LIDLDPAP 614


>gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 990

 Score =  446 bits (1148), Expect = e-144
 Identities = 222/414 (53%), Positives = 287/414 (69%), Gaps = 1/414 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            HVTP K++FT+Y +GDFG +KM                +TN+G  + L+ V+HVPD+R N
Sbjct: 215  HVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVFLQTNMGMQLLLRGVKHVPDVRFN 274

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   LD  GYDNHF  G WKL++G +VVARG     LY T   +  D++N  + EAS 
Sbjct: 275  LISVQILDDGGYDNHFGSGKWKLTKGNLVVARGEKNSKLYWTKALVAKDNVNAMDMEAS- 333

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH+RL H+SEKGL+ L KK+++   K A L+ C+HC+ GKQ +               
Sbjct: 334  -LWHRRLSHISEKGLNCLAKKDVLQGLKIAELEKCSHCMAGKQTRVSFKKHPPSRKSKLL 392

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VHSDVCGPL+V+S  G  YF+TFIDD S+KLWVY L+ KD V E FK FH +VER++G
Sbjct: 393  QLVHSDVCGPLKVKSFSGALYFVTFIDDCSKKLWVYALQRKD-VLERFKQFHALVERQSG 451

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLK +R+DNGGEY    FD YCK +GI HEKT P+TPQ N +AERMN T++ERVR MLS
Sbjct: 452  KKLKRIRTDNGGEYCGP-FDVYCKQHGIAHEKTPPKTPQLNDLAERMNMTLLERVRCMLS 510

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             AKLPK FWGEA+  A ++IN +P+V LN EVP+K+W GK+ SY HLRVFGC A+ H+ +
Sbjct: 511  DAKLPKHFWGEALYTAVHVINLTPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPR 570

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK 1244
            + R KLD +T  CIFIGYG++EFGYR +DP EKK++RSRDV F E +T+EDI+K
Sbjct: 571  DERSKLDTKTRQCIFIGYGEDEFGYRFYDPIEKKLVRSRDVQFMEDQTIEDIDK 624


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  452 bits (1164), Expect = e-143
 Identities = 234/447 (52%), Positives = 295/447 (65%), Gaps = 13/447 (2%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +HVTPH+++F++Y+ GDFG VKM                 T  G+ + LK+VRHVPD+RL
Sbjct: 297  FHVTPHEEFFSSYQKGDFGMVKMGNHVTSKIVGIGEIALMTENGNKLMLKEVRHVPDMRL 356

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD+ G  N F+   WKLSRG+M+VARG   G+LY    KIC   +N+A+ +AS
Sbjct: 357  NLISVSKLDEAGMINQFSADRWKLSRGSMIVARGKKEGSLYTMQGKICKGDMNVAQ-DAS 415

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
            + LWH+RLGHMSEKGL  L K  L N+ K   L+ C  CL GKQ                
Sbjct: 416  KELWHRRLGHMSEKGLEILAKDHLPNI-KGQPLESCEDCLAGKQHRVSFRRPDDARRRKH 474

Query: 543  XX--VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 716
                VHSDVC   E  S+GG +YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER 
Sbjct: 475  ILDLVHSDVCSTSE-RSIGGAQYFVTFIDDHSRKVWVYPLKTKDQVLQAFKEFHALVERA 533

Query: 717  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 896
            TG KLKC+R+DNGGEY    F+ YCKT+GIRHEK  P+TPQ NGVAERMNRTI E+VRSM
Sbjct: 534  TGRKLKCIRTDNGGEYLGP-FEYYCKTHGIRHEKVPPKTPQMNGVAERMNRTIAEKVRSM 592

Query: 897  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1076
            LS AK+PK FWGEAV  A  LIN SPS PLN E+PE++WSGK   Y HL+VFGC A+ H+
Sbjct: 593  LSHAKIPKSFWGEAVLTAADLINLSPSRPLNGEIPEEVWSGKKAYYGHLKVFGCRAFVHI 652

Query: 1077 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMS 1256
             K+ R KLDA+   CI++    +E G+RLWDP  KK++RSRDV+F E +T++DI+KP   
Sbjct: 653  PKDERTKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSRDVIFFEDQTIQDIKKPEKP 712

Query: 1257 QK-----------SNIGAQISDAAPEP 1304
            ++           +N G +IS    EP
Sbjct: 713  KQKEVQDSSPIVINNSGGEISQRIDEP 739


>emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]
          Length = 1017

 Score =  444 bits (1143), Expect = e-143
 Identities = 211/433 (48%), Positives = 294/433 (67%), Gaps = 2/433 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            H TP KD+FT+Y   DFG+V+M                +T+ G+ +TLK+V+H+PD+R+N
Sbjct: 54   HATPRKDFFTSYTFSDFGSVRMGNDGLAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMN 113

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   LD +G  N F    WKL+RG+MV+ + +   +LY   V++   S+N  + +++ 
Sbjct: 114  LISTRKLDDEGLCNTFRDSQWKLTRGSMVITKENKSSSLYLMQVRVIDSSINAVDDDSTF 173

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH RL HMSEKGL  + KK L++  K+ +L  C HCL GKQ +               
Sbjct: 174  KLWHNRLSHMSEKGLMIMAKKNLLSGMKKGSLKRCAHCLGGKQTRVAFKTLHHTRKPGML 233

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              V+SDVCGP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G
Sbjct: 234  DLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSG 293

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLKC++ DNGGEY+S  FD YC+ +GIRH+KT P+TPQ NG+AE MNRT++ERVR +LS
Sbjct: 294  EKLKCIQIDNGGEYSSP-FDEYCRQHGIRHQKTPPKTPQLNGLAESMNRTLVERVRCLLS 352

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             ++LP+ FWGEA+    +L+N +P VPL F+VP+++WS  +  Y HLRVFGC A+ H+ K
Sbjct: 353  QSQLPRSFWGEALNTVVHLLNLTPCVPLEFDVPDRIWSNNEICYDHLRVFGCKAFVHIPK 412

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1262
            +   KLDA+T PC+FIGYG +E GYR +DP +KK++RSRDVVF E  T++DIEK    + 
Sbjct: 413  DEISKLDAKTRPCVFIGYGHDELGYRFYDPMQKKLVRSRDVVFMEDHTIQDIEKTNPMES 472

Query: 1263 SNIGAQIS-DAAP 1298
             + G  I  D AP
Sbjct: 473  QHSGDLIDLDLAP 485


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  447 bits (1149), Expect = e-141
 Identities = 212/434 (48%), Positives = 296/434 (68%), Gaps = 1/434 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            H TP KD+FT+Y +GDFG+V+M                +T+ G+ +TLK+V+H+PD+R+N
Sbjct: 280  HATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMN 339

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   LD +G+ N F    WKL+RG+MV+A+G+   +LY    ++   S+N  + +++ 
Sbjct: 340  LISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTF 399

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH +LGHMSEKGL  L KK L+   K+ +L  C HCL GKQ +               
Sbjct: 400  ELWHNKLGHMSEKGLMILAKKNLLXGMKKGSLKRCAHCLAGKQTRVAFKTLHHTRKPGML 459

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              V+SDV GP++ ++LGG+ YF+TFIDD SRK+WVY LKTKDQV + FK FH +VER++G
Sbjct: 460  DLVYSDVYGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSG 519

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLKC+R+DNGGEY S  FD YC+ +G RH+KT P+TPQ NG+AERMNRT++ERVR +LS
Sbjct: 520  EKLKCIRTDNGGEY-SGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCLLS 578

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             ++LP+ FWGEA+    +++N +P VPL F+VP+++WS  + SY HLRVFGC A+ H+ K
Sbjct: 579  QSQLPRSFWGEALNTIVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPK 638

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1262
            + R KLDA+T PC+FIGYG +E GY+ +D  +KK+ RS DVVF E  T++DIEK T   +
Sbjct: 639  DERSKLDAKTRPCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEK-TNPME 697

Query: 1263 SNIGAQISDAAPEP 1304
            S     + D  P P
Sbjct: 698  SQHSGDLIDLDPAP 711


>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
          Length = 1339

 Score =  446 bits (1147), Expect = e-141
 Identities = 217/441 (49%), Positives = 290/441 (65%), Gaps = 6/441 (1%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            H T  +D F+TY+ GDFG V+M                +T+  +T+ LK V+H+P+LR N
Sbjct: 307  HATSRRDLFSTYETGDFGVVRMGNNGQANVIGIGDICVETSNETTLVLKGVKHIPELRFN 366

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            LLS   LD +GYDN F++  WKL +G+MVVA+G     LY   + +    +N  + ++S 
Sbjct: 367  LLSVGELDNEGYDNSFSENEWKLKKGSMVVAKGKKNSNLYVVQLGVSKCYINTCDNDSSS 426

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXXX 545
             LWH+RLGHMSEKGLS L KK +++   +A L  C+HCL GKQ+                
Sbjct: 427  ELWHKRLGHMSEKGLSILAKKNVLHGVSDAKLRKCSHCLAGKQRRVSFKSSEPKRKSEVL 486

Query: 546  X-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VHSDVCGP++  SLGG  YF+TFIDD SRK W Y LKTKDQV + FK F   VERETG
Sbjct: 487  DLVHSDVCGPMKTRSLGGAYYFVTFIDDYSRKTWAYTLKTKDQVLDTFKSFQASVERETG 546

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLKC+R++NGGEY    FD YC+  GIRH+K+ P+TPQ NG+AERMNRT++ER+R +LS
Sbjct: 547  KKLKCIRTNNGGEYVGP-FDKYCQDQGIRHQKSPPKTPQLNGLAERMNRTLVERMRCLLS 605

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             + LPK FWGEA+    +L+N +P VPL F+VP  +W+GK+ SY HLRVFGC+AY H+ K
Sbjct: 606  QSMLPKYFWGEALNTVVHLLNLTPCVPLKFDVPNHVWNGKEVSYDHLRVFGCMAYVHIPK 665

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK-----P 1247
            + R KLD ++  C+F+GYG +EFGYR +DP ++K+IRSRDVVF E  T+EDI+K     P
Sbjct: 666  DERSKLDEKSKKCVFVGYGLDEFGYRFFDPVQRKLIRSRDVVFMEDYTIEDIDKVENKDP 725

Query: 1248 TMSQKSNIGAQISDAAPEPFV 1310
            T   +  +    +  AP P +
Sbjct: 726  TFEDEEIVDIGSTTIAPTPII 746


>gb|KYP73265.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 728

 Score =  429 bits (1104), Expect = e-140
 Identities = 210/414 (50%), Positives = 277/414 (66%), Gaps = 1/414 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            HVT  K++FT+Y  GDFG +K+                +TN+G  + L+ V H PD+  N
Sbjct: 274  HVTTRKEFFTSYTFGDFGVLKIGNDGVSKVIGVGDVCLQTNMGMQLLLRRVNHAPDVHFN 333

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   L+  GYD HF  G WKL++G +VVA+G     L+ T   +  D++N  + EAS 
Sbjct: 334  LISVQILEDGGYDTHFGSGKWKLTKGNLVVAKGEEISKLFWTKAMVAKDNVNAMDMEAS- 392

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH++L H+SEKGL+ L K +++   K A L+ C+HC+ GKQ +               
Sbjct: 393  -LWHRKLSHISEKGLNCLAKNDVLQGLKSAELEKCSHCMAGKQTRVSFKKHPPSRKSELL 451

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VH DVCGPL+ +S  G  YF+TFIDD SRKLWVY  + KDQV E FK FH +VER++G
Sbjct: 452  PLVHPDVCGPLKEKSFSGALYFVTFIDDCSRKLWVYVFQRKDQVLERFKQFHALVERQSG 511

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLK + +DNGGEY    FD YCK +GI HEKT P+TPQ NG+ ERMNRT++E VR MLS
Sbjct: 512  KKLKHIHTDNGGEYCGP-FDVYCKQHGIAHEKTPPKTPQLNGLVERMNRTLLETVRCMLS 570

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             AKLPK FWGEA+  A ++IN +P+V LN EVP+K+W GK+ SY HLRVFGC A+ H+ +
Sbjct: 571  DAKLPKHFWGEALYTAVHVINLTPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPR 630

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK 1244
            + R KLDA+T  CIFIGY ++EFGYR +DP EKK++RSRDV F E +T+EDI+K
Sbjct: 631  DERSKLDAKTRQCIFIGYDEDEFGYRFYDPVEKKLVRSRDVQFMEDQTIEDIDK 684


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  444 bits (1142), Expect = e-140
 Identities = 219/414 (52%), Positives = 282/414 (68%), Gaps = 1/414 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            H TP ++ F++Y  GDFG VKM                +T  G  + L+DVRHVPD+RLN
Sbjct: 301  HATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLN 360

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   LD++GY N F  G WKL++G+++VARG     LY T   I    +N+AE +++ 
Sbjct: 361  LISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNI 420

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH+RLGHMSEK ++ L+KK  +    +  L  C  CL GKQ +               
Sbjct: 421  KLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVL 480

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              VHSDVCGP + +SLGG +YF+TFIDD SRK WVY LKTKDQVF+ FK F  +VERETG
Sbjct: 481  DLVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETG 539

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLKC+R+DNGGEY  + FDAYCK +GIRH+ T P+TPQ NG+AERMNRT++ER R +LS
Sbjct: 540  KKLKCIRTDNGGEYQGQ-FDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLS 598

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             +KLPK FWGEA+  A Y++N SP VPL ++ PEK+W G+D SY  LRVFGC AY HV K
Sbjct: 599  HSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVPK 658

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEK 1244
            + R KLD +T  C+FIGYG +  GY+ +DP EKK++RSRDVVF E +T+EDI+K
Sbjct: 659  DERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDK 712


>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  434 bits (1116), Expect = e-136
 Identities = 217/428 (50%), Positives = 289/428 (67%), Gaps = 5/428 (1%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +HVTPH  +F++Y++GDFG V+M                 T+ G  + LKDVRHVP +RL
Sbjct: 287  FHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVLKDVRHVPAMRL 346

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD  G  N+F +G WKL++G++V+ARG   G+LY    K+C   +NI   +  
Sbjct: 347  NLISAGKLDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCKGEVNITTDDIE 406

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
              +WH+RLGH+SEKGL  L +K+L++  K  +LDPC HCL GKQ                
Sbjct: 407  --VWHKRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQRSSPPVRRKN 464

Query: 543  XX--VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 716
                VH+DVC   E +S+GG  YF+TFIDD SRK+W++ LK+KDQV + FK FH +VERE
Sbjct: 465  ILDLVHTDVCSMSE-KSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVERE 523

Query: 717  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 896
            TG K+KC+RSDNGGEY    F+ YCK +GIR EKT P+TPQ NG+AERMNRTI ERVR +
Sbjct: 524  TGRKIKCVRSDNGGEYRGP-FETYCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRCV 582

Query: 897  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1076
            LS AKLPK FWGEA+     ++N +PSVPL   +P+++W+GK  SY+HL+VFGC A+ H+
Sbjct: 583  LSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVFGCRAFVHI 642

Query: 1077 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDI---EKP 1247
             K+ R KLDA+T  CI++    +EFGYRLWDP  KKV+RSRDVVF E +T+EDI   EKP
Sbjct: 643  PKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEKP 702

Query: 1248 TMSQKSNI 1271
             + + + +
Sbjct: 703  RLRKSTEL 710


>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  434 bits (1116), Expect = e-136
 Identities = 217/428 (50%), Positives = 289/428 (67%), Gaps = 5/428 (1%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +HVTPH  +F++Y++GDFG V+M                 T+ G  + LKDVRHVP +RL
Sbjct: 287  FHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVLKDVRHVPAMRL 346

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD  G  N+F +G WKL++G++V+ARG   G+LY    K+C   +NI   +  
Sbjct: 347  NLISAGKLDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCKGEVNITTDDLE 406

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
              +WH+RLGH+SEKGL  L +K+L++  K  +LDPC HCL GKQ                
Sbjct: 407  --VWHKRLGHISEKGLHILARKQLLSNVKGKSLDPCAHCLAGKQHRVAFQRSSPPVRRKN 464

Query: 543  XX--VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERE 716
                VH+DVC   E +S+GG  YF+TFIDD SRK+W++ LK+KDQV + FK FH +VERE
Sbjct: 465  ILDLVHTDVCSMSE-KSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVERE 523

Query: 717  TGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSM 896
            TG K+KC+RSDNGGEY    F+ YCK +GIR EKT P+TPQ NG+AERMNRTI ERVR +
Sbjct: 524  TGRKIKCVRSDNGGEYRGP-FETYCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRCV 582

Query: 897  LSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHV 1076
            LS AKLPK FWGEA+     ++N +PSVPL   +P+++W+GK  SY+HL+VFGC A+ H+
Sbjct: 583  LSHAKLPKLFWGEAIMAVVDIVNLTPSVPLGGAIPDEVWTGKRASYNHLKVFGCRAFVHI 642

Query: 1077 SKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDI---EKP 1247
             K+ R KLDA+T  CI++    +EFGYRLWDP  KKV+RSRDVVF E +T+EDI   EKP
Sbjct: 643  PKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEKP 702

Query: 1248 TMSQKSNI 1271
             + + + +
Sbjct: 703  RLRKSTEL 710


>gb|KYP54197.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 512

 Score =  410 bits (1053), Expect = e-136
 Identities = 204/369 (55%), Positives = 258/369 (69%), Gaps = 1/369 (0%)
 Frame = +3

Query: 141  ITLKDVRHVPDLRLNLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVK 320
            + L+ V+H PD+R NL+S    D  GYDNHF  G WKL++G +VVARG     LY T   
Sbjct: 3    LLLRGVKHAPDVRFNLISVQIFDDGGYDNHFGSGKWKLTKGNLVVARGEKNSKLYWTKAL 62

Query: 321  ICTDSLNIAEKEASQNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQX 500
            +  DS+N  + EAS  LWH+RL H+SEKGL+ L KK+++   K A L+ C+HC+ GKQ  
Sbjct: 63   VAKDSVNAMDMEAS--LWHRRLSHISEKGLNCLAKKDVLQGLKSAELEKCSHCMAGKQTI 120

Query: 501  XXXXXXXXXXXXXXXX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVF 677
                             VHSDVCGPL+V+S  G  YF+TFIDD SRKLWVY L+ KDQV 
Sbjct: 121  VSFKKHLPSRKSELLQLVHSDVCGPLKVKSFSGALYFVTFIDDCSRKLWVYALQRKDQVL 180

Query: 678  EYFKLFHVMVERETGNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAE 857
            E FK FH +VER++G KLK +R+DNG EY    FD YCK +GI HEKT P+TPQ NG+ E
Sbjct: 181  ERFKQFHALVERQSGKKLKHIRTDNGSEYCGP-FDVYCKQHGIAHEKTPPKTPQLNGLVE 239

Query: 858  RMNRTIMERVRSMLSMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYS 1037
            RMNRT++ERVR MLS AKLPK F GEA+    ++IN +P+V LN EVPEK+W GK+ SY 
Sbjct: 240  RMNRTLLERVRYMLSDAKLPKHFLGEALYTVVHVINLTPTVILNSEVPEKIWFGKNASYD 299

Query: 1038 HLRVFGCLAYAHVSKELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHE 1217
            HLRVF C A+ H+ ++ R KLDA+T  CI IGYG++EFGYR +DP EKK++RSRDV F E
Sbjct: 300  HLRVFVCKAFVHIPRDERSKLDAKTRQCILIGYGEDEFGYRFYDPVEKKLVRSRDVQFME 359

Query: 1218 SKTMEDIEK 1244
             +T+EDI+K
Sbjct: 360  DQTIEDIDK 368


>emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]
          Length = 1302

 Score =  430 bits (1105), Expect = e-135
 Identities = 206/441 (46%), Positives = 290/441 (65%), Gaps = 1/441 (0%)
 Frame = +3

Query: 6    HVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRLN 185
            H TP KD+FT+Y +GDFG+V+M                +T+ G+ +TLK+V+H+PD+R+N
Sbjct: 167  HATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMN 226

Query: 186  LLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEASQ 365
            L+S   LD +G+ N F    WKL+RG+M +A+G+   +LY    ++   S+N  + +++ 
Sbjct: 227  LISTGKLDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSLYLMQARVIDSSINAVDDDSTF 286

Query: 366  NLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQ-QXXXXXXXXXXXXXXX 542
             LWH RLGHMSEKGL  L KK L++  K+ +L  C HCL GK  +               
Sbjct: 287  ELWHNRLGHMSEKGLMILAKKNLLSXMKKGSLKRCAHCLAGKXTRVAFKTLHHTRKPGML 346

Query: 543  XXVHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERETG 722
              V+ DVCGP++ ++L G+ YF+TFIDD SRK+WVY LK KDQV + FK FH +VER++G
Sbjct: 347  DLVYFDVCGPMKTKTLXGSLYFVTFIDDHSRKIWVYTLKXKDQVLDVFKQFHALVERQSG 406

Query: 723  NKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSMLS 902
             KLKC+R+DNGGEY S  FD YC+ +GIRH+KT P+TPQ NG+AERMNRT++ERVR +LS
Sbjct: 407  EKLKCIRTDNGGEY-SGPFDEYCRQHGIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLS 465

Query: 903  MAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSK 1082
             ++LP+ FWGEA+    +++N +P VPL F+VP+++WS  + SY HLRVFGC A+ H+ K
Sbjct: 466  QSQLPRSFWGEALNTVVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPK 525

Query: 1083 ELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMEDIEKPTMSQK 1262
            + R KLDA+T PC+FIGYG +E GYR +D  +KK++   D    +   M D+E PT    
Sbjct: 526  DERSKLDAKTRPCVFIGYGQDELGYRFYDSVQKKLV--EDEAHDDQHDMGDVETPT---- 579

Query: 1263 SNIGAQISDAAPEPFVRDGDV 1325
                 Q+ D A +     GDV
Sbjct: 580  -----QVEDEAHDDQHDMGDV 595


>emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]
          Length = 1246

 Score =  411 bits (1056), Expect = e-128
 Identities = 203/412 (49%), Positives = 261/412 (63%), Gaps = 1/412 (0%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +H TPH++    Y AGDFG V +                    GS   L+ VRH+PDLR 
Sbjct: 266  FHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRR 325

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD +G+   F  GTWK+++G  V+ARG   GTLY T      D++ +A+    
Sbjct: 326  NLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCP--RDTIAVADASTD 383

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
             +LWH+RLGHMSEKG+  L+ K  +   K    D C  C+ GKQ+               
Sbjct: 384  TSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEK 443

Query: 543  XX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERET 719
               VH+D+ GP  V SLGG++Y++TFIDD+SRK+WVYFLK K  VF  FK +  MVE ET
Sbjct: 444  LELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETET 503

Query: 720  GNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSML 899
            G K+KCLRSDNGGEY    F  YC   GIR EKT+P TPQ NGVAERMNRT+ ER RSM 
Sbjct: 504  GLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMR 563

Query: 900  SMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVS 1079
              A LPK FW +AV  A YLINR PSVP+ F +PE++WSGK+  +SHL+VFGC++Y H+ 
Sbjct: 564  LHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHID 623

Query: 1080 KELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMED 1235
             + R KLDA++  C FIGYGDE+FGYR WD + +K+IRSR+V+F+E    +D
Sbjct: 624  SDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKD 675


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score =  411 bits (1057), Expect = e-128
 Identities = 203/412 (49%), Positives = 261/412 (63%), Gaps = 1/412 (0%)
 Frame = +3

Query: 3    YHVTPHKDYFTTYKAGDFGAVKMXXXXXXXXXXXXXXXXKTNVGSTITLKDVRHVPDLRL 182
            +H TPH++    Y AGDFG V +                    GS   L+ VRH+PDLR 
Sbjct: 294  FHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRR 353

Query: 183  NLLSGIALDKQGYDNHFTKGTWKLSRGTMVVARGHICGTLYKTHVKICTDSLNIAEKEAS 362
            NL+S   LD +G+   F  GTWK+++G  V+ARG   GTLY T      D++ +A+    
Sbjct: 354  NLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGTLYMTSCP--RDTIAVADASTD 411

Query: 363  QNLWHQRLGHMSEKGLSTLIKKELINVDKEAALDPCNHCLFGKQQXXXXXXXXXXXXXXX 542
             +LWH+RLGHMSEKG+  L+ K  +   K    D C  C+ GKQ+               
Sbjct: 412  TSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEK 471

Query: 543  XX-VHSDVCGPLEVESLGGNKYFLTFIDDASRKLWVYFLKTKDQVFEYFKLFHVMVERET 719
               VH+D+ GP  V SLGG++Y++TFIDD+SRK+WVYFLK K  VF  FK +  MVE ET
Sbjct: 472  LELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETET 531

Query: 720  GNKLKCLRSDNGGEYTSKAFDAYCKTYGIRHEKTVPRTPQHNGVAERMNRTIMERVRSML 899
            G K+KCLRSDNGGEY    F  YC   GIR EKT+P TPQ NGVAERMNRT+ ER RSM 
Sbjct: 532  GLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMR 591

Query: 900  SMAKLPKPFWGEAVRVACYLINRSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVS 1079
              A LPK FW +AV  A YLINR PSVP+ F +PE++WSGK+  +SHL+VFGC++Y H+ 
Sbjct: 592  LHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHID 651

Query: 1080 KELRQKLDARTTPCIFIGYGDEEFGYRLWDPKEKKVIRSRDVVFHESKTMED 1235
             + R KLDA++  C FIGYGDE+FGYR WD + +K+IRSR+V+F+E    +D
Sbjct: 652  SDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKD 703