BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia31_contig00000542
         (2000 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011094631.1| RNA polymerase sigma factor sigF, chloroplas...   859   0.0  
ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF,...   843   0.0  
ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF,...   839   0.0  
ref|XP_011094632.1| RNA polymerase sigma factor sigF, chloroplas...   787   0.0  
gb|PIN23381.1| hypothetical protein CDL12_03889 [Handroanthus im...   768   0.0  
ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplas...   662   0.0  
gb|KZV34129.1| RNA polymerase sigma factor sigF, chloroplastic [...   649   0.0  
emb|CDP06761.1| unnamed protein product [Coffea canephora]            645   0.0  
ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF,...   641   0.0  
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   640   0.0  
emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]     638   0.0  
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   635   0.0  
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     633   0.0  
ref|XP_019250683.1| PREDICTED: RNA polymerase sigma factor sigF,...   631   0.0  
ref|XP_016487689.1| PREDICTED: RNA polymerase sigma factor sigF,...   629   0.0  
ref|XP_021289358.1| RNA polymerase sigma factor sigF, chloroplas...   628   0.0  
ref|XP_020422239.1| RNA polymerase sigma factor sigF, chloroplas...   625   0.0  
ref|XP_007027376.2| PREDICTED: RNA polymerase sigma factor sigF,...   625   0.0  
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   625   0.0  
ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplas...   625   0.0  

>ref|XP_011094631.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Sesamum
            indicum]
          Length = 561

 Score =  859 bits (2219), Expect = 0.0
 Identities = 447/566 (78%), Positives = 491/566 (86%), Gaps = 12/566 (2%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  +LV+SPPQFP RTH+RN        SVLLLH+QVTPA+TSLSTT L R  PTSVL
Sbjct: 1    MEAGRSLVSSPPQFPPRTHLRN----CSSSSVLLLHDQVTPALTSLSTT-LARHSPTSVL 55

Query: 1681 IQDQRNESRPLLCLKEDSTYQ--QTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLL 1508
             QDQ NESR +LC KEDS +Q  QTL  RQ +MAP  SS +GN NVDPD+YVN+FQLQLL
Sbjct: 56   TQDQHNESRSMLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLL 115

Query: 1507 RRPELWYLWASLQKEEQSFSSTSENLTG-------VEADHVVALAREAFSACKEAASIAK 1349
            RRPELWYLW SLQ +EQ FS T E+++        VEAD VVALAREAFSACKEAA+I K
Sbjct: 116  RRPELWYLWPSLQTKEQLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVK 175

Query: 1348 DARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPES 1172
            DA LFGA LDD SSIR L  VP +R VRSTRL+ERQ KRR VPKPKIE+QETNHRRKPES
Sbjct: 176  DAELFGARLDDSSSIRSLTGVPAQRTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPES 235

Query: 1171 HRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREP 992
             RK +EGFDPNDPLR+FL GPET QLLT+KEESELIVKIQELM+LQE++SRL+ QFSREP
Sbjct: 236  QRKSDEGFDPNDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREP 295

Query: 991  TLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGS 812
            TLVEWA AAG SC  LQSQ+HCG+SSR KLI ANFRMVVHIAKQYQGRGLSLQDLLQEGS
Sbjct: 296  TLVEWAAAAGISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGS 355

Query: 811  MGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKS 632
            MGLM+SVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLS+VYEAKK 
Sbjct: 356  MGLMRSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKL 415

Query: 631  CVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIE 452
            C+QQGNH PTKEDIAACAG+SVE LE+LLYTAR+PLS+Q+PVW DQ+TT+QEITADTTIE
Sbjct: 416  CIQQGNHLPTKEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIE 475

Query: 451  VPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQ 272
            VP+VG +KQ+MRQH RNLLSVL+PRERKIIRLRFGIE GEQKSLSEIGAGFGLSKERVRQ
Sbjct: 476  VPDVGVAKQLMRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQ 535

Query: 271  LESRALYKLKQCLSSQGLEAYADMLI 194
            LESRALYKLKQCL S GL AYA+M+I
Sbjct: 536  LESRALYKLKQCLGSHGLAAYANMII 561


>ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Erythranthe guttata]
 gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Erythranthe guttata]
          Length = 559

 Score =  843 bits (2178), Expect = 0.0
 Identities = 429/560 (76%), Positives = 485/560 (86%), Gaps = 9/560 (1%)
 Frame = -2

Query: 1846 NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQR 1667
            +LV+SPPQFPLRTH+RN        SVLLLHEQVTPA+TSLST SL R   TSVLIQDQR
Sbjct: 6    SLVSSPPQFPLRTHVRN--CSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQR 63

Query: 1666 NESRPLLCLKEDSTYQQTLDKRQLLMAPGLSS-REGNKNVDPDEYVNDFQLQLLRRPELW 1490
            NESRPLL LK+D+T+QQT D+RQ++  P  SS  EGN  +DPD+Y ND QLQLLRRPELW
Sbjct: 64   NESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELW 123

Query: 1489 YLWASLQKEEQSFS--------STSENLTGVEADHVVALAREAFSACKEAASIAKDARLF 1334
            YLW+SLQK+E  F         ST+EN+TG EA+HV+ALAREAFSACKEAASIA+DARL+
Sbjct: 124  YLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDARLY 183

Query: 1333 GAHLDDPSSIRGLASVPVRRIVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNE 1154
                D+ SS R L   PV+RIVRS R LERQ KRR PKP++E QE NHRRK E H+K +E
Sbjct: 184  ----DNSSSTRSLVGSPVQRIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLEPHKKSSE 239

Query: 1153 GFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWA 974
            G+DPNDPLR+FLWGPETTQLL+AKEE++LI KIQELMKLQEVRSRL+TQFSREPTLVEWA
Sbjct: 240  GYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWA 299

Query: 973  EAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKS 794
             A G S   LQ QV+CGN SR+KLIYANFR+VV+IAKQYQGRGL+LQDLLQ GSMGLMKS
Sbjct: 300  AAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKS 359

Query: 793  VEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGN 614
            VEKFKP  GCRFATYAYWWIRQSIRK+LFQHSRTIRLPENVY+LLSKVYEAKK+C++QGN
Sbjct: 360  VEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGN 419

Query: 613  HYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGA 434
            H PTKEDIAA AGLSVE+L++LLYT+RVPLSMQ+PVWMDQ+TT+QEITADT +E P+VGA
Sbjct: 420  HQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGA 479

Query: 433  SKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRAL 254
            SKQIMRQHTRNLLSVLNPRERKIIRLRFGIE GEQKSLS+IGAGFGLSKER+RQ+ESRAL
Sbjct: 480  SKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRAL 539

Query: 253  YKLKQCLSSQGLEAYADMLI 194
            YKLKQCLSS GL AYA+ML+
Sbjct: 540  YKLKQCLSSHGLSAYAEMLV 559


>ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Erythranthe guttata]
          Length = 558

 Score =  839 bits (2168), Expect = 0.0
 Identities = 428/560 (76%), Positives = 483/560 (86%), Gaps = 9/560 (1%)
 Frame = -2

Query: 1846 NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQR 1667
            +LV+SPPQFPLRTH+RN        SVLLLHEQVTPA+TSLST SL R   TSVLIQDQR
Sbjct: 6    SLVSSPPQFPLRTHVRN--CSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQR 63

Query: 1666 NESRPLLCLKEDSTYQQTLDKRQLLMAPGLSS-REGNKNVDPDEYVNDFQLQLLRRPELW 1490
            NESRPLL LK+D+T+QQT D+RQ++  P  SS  EGN  +DPD+Y ND QLQLLRRPELW
Sbjct: 64   NESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELW 123

Query: 1489 YLWASLQKEEQSFS--------STSENLTGVEADHVVALAREAFSACKEAASIAKDARLF 1334
            YLW+SLQK+E  F         ST+EN+TG EA+HV+ALAREAFSACKEAASIA+DARL+
Sbjct: 124  YLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDARLY 183

Query: 1333 GAHLDDPSSIRGLASVPVRRIVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNE 1154
                 D SS   L   PV+RIVRS R LERQ KRR PKP++E QE NHRRK E H+K +E
Sbjct: 184  -----DNSSSTSLVGSPVQRIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLEPHKKSSE 238

Query: 1153 GFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWA 974
            G+DPNDPLR+FLWGPETTQLL+AKEE++LI KIQELMKLQEVRSRL+TQFSREPTLVEWA
Sbjct: 239  GYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWA 298

Query: 973  EAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKS 794
             A G S   LQ QV+CGN SR+KLIYANFR+VV+IAKQYQGRGL+LQDLLQ GSMGLMKS
Sbjct: 299  AAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKS 358

Query: 793  VEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGN 614
            VEKFKP  GCRFATYAYWWIRQSIRK+LFQHSRTIRLPENVY+LLSKVYEAKK+C++QGN
Sbjct: 359  VEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGN 418

Query: 613  HYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGA 434
            H PTKEDIAA AGLSVE+L++LLYT+RVPLSMQ+PVWMDQ+TT+QEITADT +E P+VGA
Sbjct: 419  HQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGA 478

Query: 433  SKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRAL 254
            SKQIMRQHTRNLLSVLNPRERKIIRLRFGIE GEQKSLS+IGAGFGLSKER+RQ+ESRAL
Sbjct: 479  SKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRAL 538

Query: 253  YKLKQCLSSQGLEAYADMLI 194
            YKLKQCLSS GL AYA+ML+
Sbjct: 539  YKLKQCLSSHGLSAYAEMLV 558


>ref|XP_011094632.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Sesamum
            indicum]
 ref|XP_011094633.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Sesamum
            indicum]
          Length = 496

 Score =  787 bits (2033), Expect = 0.0
 Identities = 400/496 (80%), Positives = 439/496 (88%), Gaps = 10/496 (2%)
 Frame = -2

Query: 1651 LLCLKEDSTYQ--QTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWA 1478
            +LC KEDS +Q  QTL  RQ +MAP  SS +GN NVDPD+YVN+FQLQLLRRPELWYLW 
Sbjct: 1    MLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLRRPELWYLWP 60

Query: 1477 SLQKEEQSFSSTSENLTG-------VEADHVVALAREAFSACKEAASIAKDARLFGAHLD 1319
            SLQ +EQ FS T E+++        VEAD VVALAREAFSACKEAA+I KDA LFGA LD
Sbjct: 61   SLQTKEQLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLD 120

Query: 1318 DPSSIRGLASVPVRRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDP 1142
            D SSIR L  VP +R VRSTRL+ERQ KRR VPKPKIE+QETNHRRKPES RK +EGFDP
Sbjct: 121  DSSSIRSLTGVPAQRTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDP 180

Query: 1141 NDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAG 962
            NDPLR+FL GPET QLLT+KEESELIVKIQELM+LQE++SRL+ QFSREPTLVEWA AAG
Sbjct: 181  NDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAG 240

Query: 961  TSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKF 782
             SC  LQSQ+HCG+SSR KLI ANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLM+SVEKF
Sbjct: 241  ISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKF 300

Query: 781  KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPT 602
            KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLS+VYEAKK C+QQGNH PT
Sbjct: 301  KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPT 360

Query: 601  KEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQI 422
            KEDIAACAG+SVE LE+LLYTAR+PLS+Q+PVW DQ+TT+QEITADTTIEVP+VG +KQ+
Sbjct: 361  KEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQL 420

Query: 421  MRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLK 242
            MRQH RNLLSVL+PRERKIIRLRFGIE GEQKSLSEIGAGFGLSKERVRQLESRALYKLK
Sbjct: 421  MRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLK 480

Query: 241  QCLSSQGLEAYADMLI 194
            QCL S GL AYA+M+I
Sbjct: 481  QCLGSHGLAAYANMII 496


>gb|PIN23381.1| hypothetical protein CDL12_03889 [Handroanthus impetiginosus]
          Length = 547

 Score =  768 bits (1982), Expect = 0.0
 Identities = 398/567 (70%), Positives = 461/567 (81%), Gaps = 13/567 (2%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  +L++  PQFPLR H+RN                      S S++SL R PPTSVL
Sbjct: 1    MEAGRSLISPSPQFPLRAHLRNSSY-------------------SSSSSSLVRHPPTSVL 41

Query: 1681 IQDQRNESRPLLCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRR 1502
            IQD RNESR +L  KED++ +QT+D+R +++ P  SS E NKN  PD+Y+N+FQLQLLR 
Sbjct: 42   IQDNRNESRMILSSKEDNSLKQTIDRRLVVVGPASSSNEKNKNFHPDQYLNEFQLQLLRM 101

Query: 1501 PELWYLWASLQKEEQSFSSTSENL-------TGVEADHVVALAREAFSACKEAASIAKDA 1343
            PELWYLW SL ++EQ F ++ E+L       TG EA+ VVALA+EA SA +EAASI+KDA
Sbjct: 102  PELWYLWPSLHRKEQYFPTSKESLPYKGEKFTGAEANRVVALAKEALSASQEAASISKDA 161

Query: 1342 RLFGAHLDDPSSI---RGLASVPVRRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPE 1175
             LFG HLDD  S+   RGLA+ PV+ +VRS R LE Q KRR VPKP IE+Q+TNH +K E
Sbjct: 162  ELFGDHLDDSFSLSLLRGLANAPVKNVVRSKRRLEMQAKRRRVPKPNIEVQQTNHHKKAE 221

Query: 1174 SHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSRE 995
              RK +EGFD NDPLR+FL G ET QLLTAKEESELIVKIQELMKLQEVRS L+TQF RE
Sbjct: 222  LRRKLDEGFDQNDPLRLFLGG-ETRQLLTAKEESELIVKIQELMKLQEVRSCLQTQFCRE 280

Query: 994  PTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEG 815
            PTLVEWA A G SC  L+SQ+HCGNSSR+KLIYANFRMVVHIAKQYQGRG+SLQDLLQEG
Sbjct: 281  PTLVEWAAAIGISCQALRSQIHCGNSSREKLIYANFRMVVHIAKQYQGRGVSLQDLLQEG 340

Query: 814  SMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKK 635
            SMGLM+SVEKFKPQAGCRFATYAYWWIRQSIRKALF++SRTIRLPEN+Y  L+KV+EAKK
Sbjct: 341  SMGLMRSVEKFKPQAGCRFATYAYWWIRQSIRKALFRYSRTIRLPENMYGHLTKVHEAKK 400

Query: 634  SCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTI 455
             C Q+GNH+PTKEDIAACAG++VE+LE LLYTAR+PLSMQQ VW DQ+TTYQEITADT I
Sbjct: 401  LCFQKGNHHPTKEDIAACAGMTVEKLETLLYTARLPLSMQQTVWTDQDTTYQEITADTAI 460

Query: 454  EVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVR 275
            E+P++  SKQ+MRQH RNLLSVLNPRERKIIRLRFGIE G+ KSLSEIG GFGL+KERVR
Sbjct: 461  EIPDIAVSKQLMRQHVRNLLSVLNPRERKIIRLRFGIEDGKLKSLSEIGDGFGLTKERVR 520

Query: 274  QLESRALYKLKQCLSSQGLEAYADMLI 194
            QLESRA+YKLKQCL SQGLEAYAD+L+
Sbjct: 521  QLESRAMYKLKQCLGSQGLEAYADLLV 547


>ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplastic [Quercus suber]
 gb|POE50311.1| rna polymerase sigma factor sigf, chloroplastic [Quercus suber]
          Length = 570

 Score =  662 bits (1708), Expect = 0.0
 Identities = 355/572 (62%), Positives = 436/572 (76%), Gaps = 18/572 (3%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  NL++S   FPLR H++N        SVL+LHEQ  PAVTS+ +T + R  PTSVL
Sbjct: 1    MEAGRNLLSSTQSFPLRNHLKNCLASPSSASVLMLHEQAAPAVTSMPSTLIARRSPTSVL 60

Query: 1681 IQDQRNESRPLLCL-KEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLR 1505
            +Q+Q +E+  LL + KED+  +  LDKRQ  M  G S  E   + + D+ V DF+ QLL 
Sbjct: 61   LQEQHDENGLLLDMFKEDTAPRAMLDKRQ--MGTGASVHEEKNSGNSDQLVQDFERQLLH 118

Query: 1504 RPELWYLWASLQKEEQSFSSTS--------ENLTGVEADHVVALAREAFSACKEAASIAK 1349
             P LW+L+ SLQ  + + SS S        E    VE  +VVA+A++A SA KEAA +A+
Sbjct: 119  WPGLWHLFPSLQTGKNAHSSLSLQPVTTDLEKPMDVEPCNVVAIAKKALSASKEAALLAE 178

Query: 1348 DARLFGAHLDD-PSS---IRGLASVPVR--RIVRSTRLLERQTK-RRVPKPKIEIQETNH 1190
            D++L GA  DD PSS    R L ++P+   + VRSTRLLER++K RRVPK ++ I ET  
Sbjct: 179  DSKLIGADFDDSPSSGSGSRSLVNLPLEEEKTVRSTRLLERRSKKRRVPKSEVMIHETYS 238

Query: 1189 RRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLET 1010
             R  E  RK  EGFDPNDPLR+FLWGPET QLLT  EES+LI ++Q+L+KL+EV+SRL++
Sbjct: 239  TRNVEVKRKIREGFDPNDPLRLFLWGPETKQLLTVDEESKLIAQVQDLLKLEEVKSRLQS 298

Query: 1009 QFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQD 830
             F REPTLVEWAE AG S  VLQS++H  NSSR KLIYAN RMVVHIAKQY GRGLS QD
Sbjct: 299  HFGREPTLVEWAEGAGLSYRVLQSKLHSCNSSRQKLIYANLRMVVHIAKQYLGRGLSFQD 358

Query: 829  LLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKV 650
            LLQEGSMGLMKSV KFKPQAGCRF TYAYWWIRQ+IRKA+FQHSRTIRLPENV++LL K+
Sbjct: 359  LLQEGSMGLMKSVVKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVHTLLGKI 418

Query: 649  YEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEIT 470
             E+K++ +Q+GNH+PTKEDIA   G+++++LEKLLY  R+PLSMQQPVW DQ TT+QE+T
Sbjct: 419  MESKRALIQEGNHHPTKEDIARHVGMTLDKLEKLLYNTRMPLSMQQPVWADQKTTFQEVT 478

Query: 469  ADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLS 290
            ADT IE+P+V  +KQ+MRQH RNLLS L+PRERKIIRLRFGI+  EQKSL+EIG  FGLS
Sbjct: 479  ADTGIEIPDVSVAKQLMRQHVRNLLSNLSPRERKIIRLRFGIDNSEQKSLAEIGNMFGLS 538

Query: 289  KERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            KERVRQLESRALY+LKQCLSS+GL AYAD+L+
Sbjct: 539  KERVRQLESRALYRLKQCLSSEGLGAYADLLV 570


>gb|KZV34129.1| RNA polymerase sigma factor sigF, chloroplastic [Dorcoceras
            hygrometricum]
          Length = 492

 Score =  649 bits (1673), Expect = 0.0
 Identities = 337/486 (69%), Positives = 392/486 (80%), Gaps = 10/486 (2%)
 Frame = -2

Query: 1621 QQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE------ 1460
            ++TLD+R  ++AP   S E + N+  DEYV DF+LQL     L YLW SL  +E      
Sbjct: 8    KETLDRRLRVVAPASPSNEDDNNLATDEYVRDFRLQLQHWQSLSYLWPSLHGKELPSKKT 67

Query: 1459 -QSFSSTSENLTGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVP 1283
              S SS  E L GVEADHVVALAREA  ACKEAASI K   LF AHL +   + GLA+  
Sbjct: 68   ITSVSSKGETLIGVEADHVVALAREALYACKEAASIVKYTNLFEAHLHNLPDLIGLANTS 127

Query: 1282 VR--RIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWG 1112
            +R  R+VRSTRLLER+TK RR+P+ +IE+QETNH RK ES  K + GFD ND L+MFL G
Sbjct: 128  LRHKRMVRSTRLLERRTKQRRLPELRIEVQETNHHRKRESSGK-SGGFDSNDSLQMFLGG 186

Query: 1111 PETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQV 932
             ET QLLTA+EESELI KIQELMKLQEVR+ L TQFSREPT+VEWA A G S   L+S++
Sbjct: 187  SETRQLLTAEEESELISKIQELMKLQEVRNMLRTQFSREPTVVEWAAAIGISSQALRSEL 246

Query: 931  HCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFAT 752
            HCGNSSR++LIYANFR+VVH+AKQYQGRGL+  DLLQEGS+GLM+SVEKFKPQ GCRFAT
Sbjct: 247  HCGNSSRERLIYANFRLVVHVAKQYQGRGLNFPDLLQEGSIGLMRSVEKFKPQVGCRFAT 306

Query: 751  YAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGL 572
            YAYWW+RQ+IRKALFQHSRTIRLPENVY LLSKV+EAKK C+QQG H P  EDIAACAG+
Sbjct: 307  YAYWWVRQAIRKALFQHSRTIRLPENVYGLLSKVFEAKKVCIQQGTHNPKIEDIAACAGM 366

Query: 571  SVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLS 392
             VERLE LL+TAR+P+SMQQP+WMDQ+TT+QEITAD +IE PE+ A KQ+MRQH RNLL 
Sbjct: 367  KVERLESLLFTARMPISMQQPIWMDQDTTFQEITADPSIETPELSAEKQLMRQHIRNLLG 426

Query: 391  VLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEA 212
            +LN RERKIIRLRFGIE G+Q+SLSEIGA FGL+KERVRQLESRALYKL+QCL SQGL A
Sbjct: 427  ILNTRERKIIRLRFGIEDGKQRSLSEIGAVFGLTKERVRQLESRALYKLRQCLGSQGLAA 486

Query: 211  YADMLI 194
            Y D+L+
Sbjct: 487  YTDILV 492


>emb|CDP06761.1| unnamed protein product [Coffea canephora]
          Length = 556

 Score =  645 bits (1664), Expect = 0.0
 Identities = 350/563 (62%), Positives = 432/563 (76%), Gaps = 9/563 (1%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRN-GXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSV 1685
            MEA  N ++SPP F  RTH++N         SV +L E+V P +T +   ++     TS 
Sbjct: 1    MEAARNFLSSPPTFSSRTHLKNFPSSSSTSSSVSVLREKVAPLLTRMPAVTVACYFATST 60

Query: 1684 LIQDQRNESRPLLCL-KEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLL 1508
             I +Q  ES P L L K D   Q TLD+R +  AP  S+ +G+   DPD   ++  ++LL
Sbjct: 61   HISEQHEESGPSLRLMKYDRMSQATLDRRLIDAAP--SANQGSDTDDPDHLKSNSHVKLL 118

Query: 1507 RRPELWYLWASLQKEEQSFSSTSENLTGVEADHVVALAREAFSACKEAASIAKDARLFGA 1328
            + P LWYL+ SL    QS  S  ++ T VEA++VVALA+ A SA +EAA +A++++LFGA
Sbjct: 119  QLPGLWYLFQSLDTR-QSVPSIPDDFTDVEAENVVALAKNALSASREAALLAENSKLFGA 177

Query: 1327 HLDD---PSSIRGLASVPV-RRIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESHRK 1163
             +DD   PS +  L  +P+ ++ V STRLL+RQ K RRVPKPK+E+++T    +P   RK
Sbjct: 178  SVDDTLSPSLLYALTDIPLEKKTVHSTRLLQRQPKKRRVPKPKVEVEDTRPPVRPNLQRK 237

Query: 1162 FNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTLV 983
                FD  DPLR+FL GPET +LLT  EESELI KIQ+ MK +EV+SRL++QF+REPTLV
Sbjct: 238  ---AFDLIDPLRVFLSGPET-KLLTVDEESELIGKIQDWMKQEEVKSRLQSQFNREPTLV 293

Query: 982  EWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMGL 803
            EWAEAAG SC  LQ+Q+H GN SR+KLIYAN RMVVHIA+QY GRGLSLQDLLQEGSMGL
Sbjct: 294  EWAEAAGLSCRALQTQLHSGNRSREKLIYANHRMVVHIARQYMGRGLSLQDLLQEGSMGL 353

Query: 802  MKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCVQ 623
            M+S+EKFKPQ GCRFATYAYWWIRQ+IRKA+FQHSRTIRLP+NVY LLSKV EAKK C+Q
Sbjct: 354  MRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNVYGLLSKVKEAKKLCIQ 413

Query: 622  QGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVPE 443
            QG H PTKE+IA+CAG++VE+LEKLL+TAR+PLSMQQPVWMDQ+TT+QE+TADT IE  +
Sbjct: 414  QGIHSPTKEEIASCAGITVEKLEKLLFTARMPLSMQQPVWMDQDTTFQEVTADTAIEASD 473

Query: 442  VGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLES 263
            +  SKQ+MR H RNLL +LNP+ERKIIRLRFGIE G+QKSLSEIGA FGLSKERVRQLE+
Sbjct: 474  LSVSKQLMRIHIRNLLRILNPKERKIIRLRFGIEDGKQKSLSEIGAVFGLSKERVRQLET 533

Query: 262  RALYKLKQCLSSQGLEAYADMLI 194
            RALYKLKQCL+SQGL AYADML+
Sbjct: 534  RALYKLKQCLNSQGLNAYADMLL 556


>ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Vitis vinifera]
          Length = 566

 Score =  641 bits (1654), Expect = 0.0
 Identities = 342/571 (59%), Positives = 431/571 (75%), Gaps = 16/571 (2%)
 Frame = -2

Query: 1858 SMEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSV 1685
            SMEA  N+++S P FP RTH RN         VL+LH+QV PAV S+ TT + R  PTSV
Sbjct: 6    SMEAGTNILSSTPSFPPRTHFRNSSSS-----VLMLHDQVAPAVASIPTT-IARKFPTSV 59

Query: 1684 LIQDQRNESRPL-LCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLL 1508
            L+Q+QR+E RP    LK++ T+Q TL+KRQ+ +   +S+ E N + D ++Y+ +F+ QLL
Sbjct: 60   LLQEQRDEYRPFPQALKDERTFQATLEKRQMEIV--VSADEENSD-DHNQYMVNFERQLL 116

Query: 1507 RRPELWYLWASLQKEEQSFSSTS---------ENLTGVEADHVVALAREAFSACKEAASI 1355
             +P LWY   S Q  E+S  S+S         EN   V+   V+ALA++A SA K+A S+
Sbjct: 117  LQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSL 176

Query: 1354 AKDARLFGAHLDDPSSIRGLASVP----VRRIVRSTRLLERQTKRRVPKPKIEIQETNHR 1187
             ++A+L GA L+D  S  G  S P      + VRSTRLLER++K+R   PK+ + E +  
Sbjct: 177  YENAKLLGADLEDSPSSLGAISSPNLPLEEKTVRSTRLLERRSKKR-RNPKVAVHENHGS 235

Query: 1186 RKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQ 1007
            R+ E  RK NEG+DP DPLR+FLWGPET +LLTAKEESELIV+IQELM+L+EV+ RL++ 
Sbjct: 236  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 295

Query: 1006 FSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDL 827
              REPT+VEWAEA G SC VLQSQ+H GN SR KLIYAN RMVVHIAKQYQGRGL+LQDL
Sbjct: 296  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 355

Query: 826  LQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVY 647
            LQEGSMGLM SVEKFKP AGCRFA+YAYWWIRQ++RKA+FQHSRTIRLPEN+YSLL KV 
Sbjct: 356  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 415

Query: 646  EAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITA 467
            EAK+  +Q+G+H PTKE+IA   G+++E+L++LL   R+PLSMQQPVW DQ+TT+QE+TA
Sbjct: 416  EAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTA 475

Query: 466  DTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSK 287
            DT IE+P+V  +KQ+MRQH RNLL VL P+ER+IIRLRFGI  G  ++LSEIG  FG SK
Sbjct: 476  DTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSK 535

Query: 286  ERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            ERVRQLE RAL+KLKQCLSS GLE+Y D+L+
Sbjct: 536  ERVRQLEQRALHKLKQCLSSHGLESYTDLLV 566


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 567

 Score =  640 bits (1650), Expect = 0.0
 Identities = 343/572 (59%), Positives = 432/572 (75%), Gaps = 17/572 (2%)
 Frame = -2

Query: 1858 SMEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSV 1685
            SMEA  N+++S P FP RTH RN         VL+LH+QV PAV S+ TT + R  PTSV
Sbjct: 6    SMEAGTNILSSTPSFPPRTHFRNSSSS-----VLMLHDQVAPAVASIPTT-IARKFPTSV 59

Query: 1684 LIQDQRNESRPL-LCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLL 1508
            L+Q+QR+E RP    LK++ T+Q TL+KRQ+ +   +S+ E N + D ++Y+ +F+ QLL
Sbjct: 60   LLQEQRDEYRPFPQALKDERTFQATLEKRQMEIV--VSADEENSD-DHNQYMVNFERQLL 116

Query: 1507 RRPELWYLWASLQKEEQSFSSTS---------ENLTGVEADHVVALAREAFSACKEAASI 1355
             +P LWY   S Q  E+S  S+S         EN   V+   V+ALA++A SA K+A S+
Sbjct: 117  LQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSL 176

Query: 1354 AKDARLFGAHLDD-PSSIRGLASVP----VRRIVRSTRLLERQTKRRVPKPKIEIQETNH 1190
             ++A+L GA L+D PS   G  S P      + VRSTRLLER++K+R   PK+ + E + 
Sbjct: 177  YENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKR-RNPKVAVHENHG 235

Query: 1189 RRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLET 1010
             R+ E  RK NEG+DP DPLR+FLWGPET +LLTAKEESELIV+IQELM+L+EV+ RL++
Sbjct: 236  SRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQS 295

Query: 1009 QFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQD 830
               REPT+VEWAEA G SC VLQSQ+H GN SR KLIYAN RMVVHIAKQYQGRGL+LQD
Sbjct: 296  HLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQD 355

Query: 829  LLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKV 650
            LLQEGSMGLM SVEKFKP AGCRFA+YAYWWIRQ++RKA+FQHSRTIRLPEN+YSLL KV
Sbjct: 356  LLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKV 415

Query: 649  YEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEIT 470
             EAK+  +Q+G+H PTKE+IA   G+++E+L++LL   R+PLSMQQPVW DQ+TT+QE+T
Sbjct: 416  KEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVT 475

Query: 469  ADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLS 290
            ADT IE+P+V  +KQ+MRQH RNLL VL P+ER+IIRLRFGI  G  ++LSEIG  FG S
Sbjct: 476  ADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFS 535

Query: 289  KERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            KERVRQLE RAL+KLKQCLSS GLE+Y D+L+
Sbjct: 536  KERVRQLEQRALHKLKQCLSSHGLESYTDLLV 567


>emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score =  638 bits (1646), Expect = 0.0
 Identities = 342/571 (59%), Positives = 431/571 (75%), Gaps = 17/571 (2%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  N+++S P FP RTH RN         VL+LH+QV PAV S+ TT + R  PTSVL
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSS-----VLMLHDQVAPAVASIPTT-IARKFPTSVL 54

Query: 1681 IQDQRNESRPL-LCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLR 1505
            +Q+QR+E RP    LK++ T+Q TL+KRQ+ +   +S+ E N + D ++Y+ +F+ QLL 
Sbjct: 55   LQEQRDEYRPFPQALKDERTFQATLEKRQMEIV--VSADEENSD-DHNQYMVNFERQLLL 111

Query: 1504 RPELWYLWASLQKEEQSFSSTS---------ENLTGVEADHVVALAREAFSACKEAASIA 1352
            +P LWY   S Q  E+S  S+S         EN   V+   V+ALA++A SA K+A S+ 
Sbjct: 112  QPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY 171

Query: 1351 KDARLFGAHLDD-PSSIRGLASVP----VRRIVRSTRLLERQTKRRVPKPKIEIQETNHR 1187
            ++A+L GA L+D PS   G  S P      + VRSTRLLER++K+R   PK+ + E +  
Sbjct: 172  ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKR-RNPKVAVHENHGS 230

Query: 1186 RKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQ 1007
            R+ E  RK NEG+DP DPLR+FLWGPET +LLTAKEESELIV+IQELM+L+EV+ RL++ 
Sbjct: 231  RRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSH 290

Query: 1006 FSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDL 827
              REPT+VEWAEA G SC VLQSQ+H GN SR KLIYAN RMVVHIAKQYQGRGL+LQDL
Sbjct: 291  LKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDL 350

Query: 826  LQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVY 647
            LQEGSMGLM SVEKFKP AGCRFA+YAYWWIRQ++RKA+FQHSRTIRLPEN+YSLL KV 
Sbjct: 351  LQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVK 410

Query: 646  EAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITA 467
            EAK+  +Q+G+H PTKE+IA   G+++E+L++LL   R+PLSMQQPVW DQ+TT+QE+TA
Sbjct: 411  EAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTA 470

Query: 466  DTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSK 287
            DT IE+P+V  +KQ+MRQH RNLL VL P+ER+IIRLRFGI  G  ++LSEIG  FG SK
Sbjct: 471  DTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSK 530

Query: 286  ERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            ERVRQLE RAL+KLKQCLSS GLE+Y D+L+
Sbjct: 531  ERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
 ref|XP_016467962.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Nicotiana tabacum]
          Length = 572

 Score =  635 bits (1637), Expect = 0.0
 Identities = 347/568 (61%), Positives = 419/568 (73%), Gaps = 18/568 (3%)
 Frame = -2

Query: 1846 NLVTSPPQ-FPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQ 1670
            NL++SPP  F  +T +          SVL+L+E V PA+TS+    L R  P SV+  +Q
Sbjct: 7    NLLSSPPTTFSHKTQLSRSSPSSISSSVLMLYEHVAPALTSVPHAYLVRHVPASVINPEQ 66

Query: 1669 RNESR-PLLCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPEL 1493
            + E+R  L  +KE+ T   T+D+R  L+    S+ E N  VD ++ +N  Q+QLLR P L
Sbjct: 67   QFENRLQLHSVKEEKTSLATIDRR--LVEAASSAMEENDAVDSEQNINALQVQLLRSPGL 124

Query: 1492 WYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAASIAKDARL 1337
             YL++S   +E        +S S   E L   E  +VVALAR+A  A +EAA +A+D++L
Sbjct: 125  SYLFSSYHLKEKVPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSKL 184

Query: 1336 FGAHLDDPSSIRGLASVPV-------RRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRK 1181
             G + DD S    L S  +       +RI RSTRLLER++K+R  P  K ++QETN   +
Sbjct: 185  LGTNFDD-SIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSER 243

Query: 1180 PESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFS 1001
            P+  R+ NE  D NDPLRMFLWGPET QLLT KEESELIVKIQ  MKLQEV+ RL+TQF 
Sbjct: 244  PDVRRRVNESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFD 303

Query: 1000 REPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQ 821
            REPTL+EWAEAAG +   LQSQ+  G SSRDKLI AN RMVVHIAKQYQGRGLSLQDLLQ
Sbjct: 304  REPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQ 363

Query: 820  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEA 641
            EGS+GLMKSVEKFKPQAGCRF TYAYWWIRQ +RKA+FQHSRTIRLPENVY+LLSKV +A
Sbjct: 364  EGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDA 423

Query: 640  KKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADT 461
            KK C+QQGNH+PT+EDIA+CAG+SVERL+ LL  AR PLSMQQ VW DQ+ T+QEITAD 
Sbjct: 424  KKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADN 483

Query: 460  TIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKER 281
             IE PE+  SKQ+MR+H RNLL+VL+P+ERKIIRLRFGI  GE+KSLSEIGA FGLSKER
Sbjct: 484  AIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKER 543

Query: 280  VRQLESRALYKLKQCLSSQGLEAYADML 197
            VRQLESRALY+LKQ LSS GL+AY D+L
Sbjct: 544  VRQLESRALYRLKQNLSSHGLDAYNDLL 571


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  633 bits (1633), Expect = 0.0
 Identities = 351/577 (60%), Positives = 422/577 (73%), Gaps = 23/577 (3%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  NL+ SPP FP RTH                     PA TS+ TTSL R  PTSVL
Sbjct: 1    MEAGRNLLVSPPPFPQRTHAS------------------APAATSMPTTSLARNFPTSVL 42

Query: 1681 IQDQRNESRPLLC--LKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLL 1508
            +++QR E R +LC  LKE+ T + TLD RQ+L   G    E + N   D+ V DF+ +LL
Sbjct: 43   LREQREEYR-VLCHILKEERTSEATLDMRQMLN--GAVQEEISDN--SDQLVQDFERRLL 97

Query: 1507 RRPELWYLWASLQKEEQSFSSTS----------ENLTGVEADHVVALAREAFSACKEAAS 1358
            + P LW ++ SLQ      SS +          E   G E+    ALA ++ SA K+AA 
Sbjct: 98   QWPGLWPIFPSLQTGGSPSSSLAMQPVTPTTDGEKSAGTESCLAAALAMKSLSASKQAAP 157

Query: 1357 IAKDARLFGAHLD-------DPSSIRGLASVPVR--RIVRSTRLLERQTKRRVPKPKIEI 1205
            +  +++L   + D       DP+S   L SVP+   RIVRSTRLLER++K+RVPK  + +
Sbjct: 158  LLNESKLARVNGDGLPAPSLDPAS---LVSVPLDKVRIVRSTRLLERRSKKRVPK--VGV 212

Query: 1204 QETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVR 1025
             ET H R+ +  RK +EGFDPNDPLRMFLWGPET QLLTAKEE ELI  IQ++MKL+EV+
Sbjct: 213  HETFHSRRTDIKRKSSEGFDPNDPLRMFLWGPETKQLLTAKEEFELIDHIQDMMKLEEVK 272

Query: 1024 SRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRG 845
            SRL +QF  EPTL+EWAEAAG SC VLQSQ+   N SR+KLI AN RMVVHIAKQY G+G
Sbjct: 273  SRLLSQFGHEPTLIEWAEAAGISCRVLQSQLRTANKSREKLINANLRMVVHIAKQYLGKG 332

Query: 844  LSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYS 665
            LS  DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ++RKA+FQHSRTIRLPENVY+
Sbjct: 333  LSFPDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYT 392

Query: 664  LLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTT 485
            LL KV EAKKSC+Q+GNH PTKE++A   G++VE+LEKLLYT R+PLSMQQPVW  Q+TT
Sbjct: 393  LLGKVLEAKKSCIQEGNHRPTKEELARRVGITVEKLEKLLYTTRMPLSMQQPVWAGQDTT 452

Query: 484  YQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGA 305
            +QEI ADT IE+P++   KQ+MRQH RNLLS+L+P+ER+IIRLRFGIE G+QKSLSEIGA
Sbjct: 453  FQEIIADTEIEIPDISVGKQMMRQHVRNLLSILSPKERRIIRLRFGIEDGKQKSLSEIGA 512

Query: 304  GFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
             FGLSKERVRQLESRALY+LKQCLSSQGL AY D+L+
Sbjct: 513  VFGLSKERVRQLESRALYRLKQCLSSQGLGAYTDLLV 549


>ref|XP_019250683.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            attenuata]
 gb|OIT01336.1| rna polymerase sigma factor sigf, chloroplastic [Nicotiana attenuata]
          Length = 571

 Score =  631 bits (1627), Expect = 0.0
 Identities = 346/568 (60%), Positives = 418/568 (73%), Gaps = 18/568 (3%)
 Frame = -2

Query: 1846 NLVTSPP-QFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQ 1670
            NL++SPP  F  +T +           VL+L+E V PA TS+    L R  P SV+  +Q
Sbjct: 7    NLLSSPPTNFSHKTQLSRSSPSISSS-VLMLYELVAPAFTSVPHAYLARHVPASVINPEQ 65

Query: 1669 RNESR-PLLCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPEL 1493
            + E+R  L  +KED T   T+ +R  L+    S+ E N  VD ++ +N  Q+QLLR P L
Sbjct: 66   QFENRLQLHSVKEDKTSLATIGRR--LVEAASSAMEENDAVDSEQNINALQVQLLRSPGL 123

Query: 1492 WYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAASIAKDARL 1337
             YL++S   +E        +S S   E L   E  +VVALAR+A  A +EAA +AKD++L
Sbjct: 124  SYLFSSYHIKEKGPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAKDSKL 183

Query: 1336 FGAHLDDPSSIRGLASVPV-------RRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRK 1181
             G + DD S    L S  +       +RI RSTRLLER++K+R  P  K ++QETN   +
Sbjct: 184  LGTNFDD-SIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSER 242

Query: 1180 PESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFS 1001
            P+  R+ NE  D NDPLRMFLWGPET QLLT KEESELIVKIQ  MKLQEV+ RL+TQF 
Sbjct: 243  PDVRRRVNESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFD 302

Query: 1000 REPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQ 821
            REPT++EWAEAAG +   LQSQ+  G SSRDKLI AN RMVVHIAKQYQGRGLSLQDLLQ
Sbjct: 303  REPTMIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQ 362

Query: 820  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEA 641
            EGS+GLMKSVEKFKPQAGCRF TYAYWWIRQ +RKA+FQHSRTIRLPENVY+LLSKV +A
Sbjct: 363  EGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDA 422

Query: 640  KKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADT 461
            KK C+QQGNH+PT+EDIA+CAG+SVERL+ LL  AR PLSMQQ VW DQ+TT+QEITAD 
Sbjct: 423  KKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQLVWTDQDTTFQEITADN 482

Query: 460  TIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKER 281
             IE PE+  SKQ+MR+H RNLL+VL+P+ERKIIRLRFGI  GE+KSLSEIGA FGLSKER
Sbjct: 483  AIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKER 542

Query: 280  VRQLESRALYKLKQCLSSQGLEAYADML 197
            VRQLESRALY+LKQ L+S GL+AY+D+L
Sbjct: 543  VRQLESRALYRLKQNLNSHGLDAYSDLL 570


>ref|XP_016487689.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Nicotiana tabacum]
          Length = 572

 Score =  629 bits (1623), Expect = 0.0
 Identities = 344/568 (60%), Positives = 418/568 (73%), Gaps = 18/568 (3%)
 Frame = -2

Query: 1846 NLVTSPPQ-FPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQ 1670
            NL++SPP  F  +T            SVL+L+E V P +TS+    L R  P SV+  +Q
Sbjct: 7    NLLSSPPTTFSHKTQFSRSSPSSISSSVLMLYEHVAPGLTSVPHAYLARHVPASVINPEQ 66

Query: 1669 RNESR-PLLCLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPEL 1493
            + E+R  L  +K++ T   T+D+R  L+    S+ E N  VD ++ +N  Q+QLLR P L
Sbjct: 67   QFENRLQLHTVKKEKTSLATIDRR--LVEAASSAMEENDAVDSEQNINVLQVQLLRSPGL 124

Query: 1492 WYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAASIAKDARL 1337
             YL++S   +E        +S S   E L   E + VVALAR+A  A +EAA +A+D++L
Sbjct: 125  SYLFSSYHLKEKRPLTLDTESLSDKGEKLMNFEPESVVALARKALLASREAALLAEDSKL 184

Query: 1336 FGAHLDDPSSIRGLASVPV-------RRIVRSTRLLERQTKRR-VPKPKIEIQETNHRRK 1181
               + DD S    L S  +       ++ VRSTR LER++KRR VP PK ++QETN   +
Sbjct: 185  LETNFDD-SIFPNLLSTNLTDDKLKDQKTVRSTRFLERRSKRRGVPTPKHQVQETNRSER 243

Query: 1180 PESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFS 1001
            P+  R+  E  D NDPLRMFLWGPET QLLT KEESELIVKIQ  MKLQEV+ RL+TQF 
Sbjct: 244  PDVRRRVKESIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFD 303

Query: 1000 REPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQ 821
            REPTL+EWAEAAG +   LQSQ+  G SSRDKLI AN RMVVHIAKQYQGRGLSLQDLLQ
Sbjct: 304  REPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQ 363

Query: 820  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEA 641
            EGS+GLMKSVEKFKPQAGCRF TYAYWWIRQ +RKA+FQHSRTIRLPENVY+LLSKV +A
Sbjct: 364  EGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDA 423

Query: 640  KKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADT 461
            KK C+QQGN +PT+EDIA+CAG+SVERL+ LL  AR PLSMQQ VW DQ+TT+QEITAD+
Sbjct: 424  KKLCIQQGNRHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDTTFQEITADS 483

Query: 460  TIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKER 281
             IE PE+  SKQ+MR+H RNLL+VLNP+ERKIIRLRFGI  G++KSLSEIGA FGLSKER
Sbjct: 484  AIEAPELSVSKQLMRRHIRNLLNVLNPKERKIIRLRFGIGDGKRKSLSEIGAVFGLSKER 543

Query: 280  VRQLESRALYKLKQCLSSQGLEAYADML 197
            VRQLESRALYKLK+ LSS GL+AY+D+L
Sbjct: 544  VRQLESRALYKLKKNLSSHGLDAYSDLL 571


>ref|XP_021289358.1| RNA polymerase sigma factor sigF, chloroplastic [Herrania umbratica]
          Length = 568

 Score =  628 bits (1619), Expect = 0.0
 Identities = 332/575 (57%), Positives = 430/575 (74%), Gaps = 21/575 (3%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  NL+++PP F  RT +++        SVL+ HEQ  P+ TS+S TS+ R  PTSVL
Sbjct: 1    MEAARNLLSAPPTFSTRTQLKSSVFSTPSSSVLMFHEQAAPSATSISITSVARHFPTSVL 60

Query: 1681 IQDQRNESRPLLCL---KEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQL 1511
            +Q+QR++ RPL  L   KED  Y    DK+Q+   P L+  + + N         F+ +L
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGPSLNEEKASYNFGE----LGFEKKL 116

Query: 1510 LRRPELWYLWASLQKEEQSFSSTS--------ENLTGVEADHVVALAREAFSACKEAASI 1355
            L+ P+L  L + L+ EE   S+++        + +  VE  ++VALA++A SA K+AAS+
Sbjct: 117  LQWPDLTQLLSLLESEENPLSTSNMQFVATDTKEIMDVEPSNIVALAKKALSASKQAASL 176

Query: 1354 AKDARLFGAHLDDPSS----IRGLASVPVRR----IVRSTRLLERQTKRRVPKPKIEIQE 1199
            A+D +L    LDD  S        +++PV       VRSTR LERQ+KRR  +PK+ I+E
Sbjct: 177  AEDLKL---DLDDSLSNSLGSANSSTLPVEEEEVVTVRSTRRLERQSKRRRVQPKVTIRE 233

Query: 1198 TNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSR 1019
            T   R+ +  RK ++GFDPND LR+FLWGPET QLLTAKEESEL  ++Q+LM+L++V+S+
Sbjct: 234  TYSSRRTDVRRKLSKGFDPNDSLRLFLWGPETKQLLTAKEESELSNQVQDLMRLEKVKSK 293

Query: 1018 LETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLS 839
            L++QF REPTLVEWAEA G SC  LQ+++H GNSSRDKLIYAN RMVVHIAKQYQGRGLS
Sbjct: 294  LQSQFGREPTLVEWAEATGLSCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQGRGLS 353

Query: 838  LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLL 659
            LQDLLQEGSMGLMKSVE+FKPQ GCRFATYAYWWIRQ+IRK++ QHSRTIRLPE+V++LL
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTIRLPESVHTLL 413

Query: 658  SKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQ 479
            SKV +AKKS +++GNH P+KE++A   G++VE+L+KLL+T R+PLSMQQ VW DQ+TT+Q
Sbjct: 414  SKVLDAKKSYIREGNHCPSKEELARHVGITVEKLDKLLFTTRMPLSMQQSVWADQDTTFQ 473

Query: 478  EITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGF 299
            E+T DT IE+P+V  +KQ+MRQH RNLLSVL+P+ER+IIRLRFGIE  ++ SLSEIG  F
Sbjct: 474  EVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPKERRIIRLRFGIEESKENSLSEIGNMF 533

Query: 298  GLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            GLSKERVRQLESRALYKLKQCL+  GL AY D+L+
Sbjct: 534  GLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_020422239.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Prunus
            persica]
 gb|ONI03022.1| hypothetical protein PRUPE_6G234100 [Prunus persica]
          Length = 568

 Score =  625 bits (1613), Expect = 0.0
 Identities = 340/575 (59%), Positives = 432/575 (75%), Gaps = 21/575 (3%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXS-VLLLHEQVTPAVTSLSTTSLGRPPPTSV 1685
            MEA  + ++S   FP  TH+R+        + VL+LHEQ  PAVTS+  TS+ R  PTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1684 LIQDQRNESRPLL-CLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEY---VNDFQL 1517
            L+Q+QR+E +PLL  LKED T +  LD+ Q+    G S  E   ++D D++   VN  + 
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQI--ETGASVHE---DLDIDDFYPLVNSSKP 115

Query: 1516 QLLRRPELWYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAA 1361
            QLL   ++  +++SLQ           +S ++ S     VE  +VVALA++A SA +EAA
Sbjct: 116  QLLNH-DILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAA 174

Query: 1360 SIAKDARLFGAHLDDPSSIRGLAS--VPVRRIVRSTRLLERQTKR----RVPKPKIEIQE 1199
            S+A+D++  GA  D+  S+ GLA+  V   + VRSTR+LER+ KR    +VPK K+   E
Sbjct: 175  SLAEDSQSMGADFDESLSL-GLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHE 233

Query: 1198 TNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSR 1019
            +N     +  +K +EGF+PNDPLR+FLWGPET QLLTAKEE+ELI ++Q+L KL+EV+SR
Sbjct: 234  SNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSR 293

Query: 1018 LETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLS 839
            L+TQF REPTL+EWAEA G SC +L+SQ+  G SSR+KLIYAN RMVVHIAKQYQGRGL 
Sbjct: 294  LQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLG 353

Query: 838  LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLL 659
            LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ++RKA+FQHSRTIRLPENVYSLL
Sbjct: 354  LQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLL 413

Query: 658  SKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQ 479
             KV EAKKSC+Q+GNH P KE++A   G++VE+LEKLLY  R+PLSMQQPVW DQ+TT+Q
Sbjct: 414  GKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQ 473

Query: 478  EITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGF 299
            E+TADT +E+P+V  +KQ+MRQH R+LLS+LN RER+IIRLR+GIE G+Q+SLSEIG  F
Sbjct: 474  EVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMF 533

Query: 298  GLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            GLSKERVRQLESRA  KL+Q L SQGL AY  +L+
Sbjct: 534  GLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_007027376.2| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Theobroma
            cacao]
          Length = 568

 Score =  625 bits (1612), Expect = 0.0
 Identities = 333/575 (57%), Positives = 428/575 (74%), Gaps = 21/575 (3%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXSVLLLHEQVTPAVTSLSTTSLGRPPPTSVL 1682
            MEA  NL++SPP F  RT +++        SVL+ HEQ  PA TS+  TS+ R  PTSVL
Sbjct: 1    MEAARNLLSSPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 1681 IQDQRNESRPLLCL---KEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQLQL 1511
            +Q+QR++ RPL  L   KED  Y    DK+Q+     L+    + N         F+ +L
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQ----LGFEKKL 116

Query: 1510 LRRPELWYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAASI 1355
            L+ P+L  L + L+ EE        QS ++ ++ +  VE  ++VALA++A SA K+AAS+
Sbjct: 117  LQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASL 176

Query: 1354 AKDARLFGAHLDDP-SSIRGLAS---VPVRR----IVRSTRLLERQTKRRVPKPKIEIQE 1199
            ++D +L    LDD  S+  G A+   +PV +     VRSTR LERQ+KRR  +PK+ I+E
Sbjct: 177  SEDLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRE 233

Query: 1198 TNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSR 1019
            T   R+ +  RK +EGFDPNDPLR+FLWGPET QLLTAKEESEL  ++Q LM+L++V+S+
Sbjct: 234  TYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSK 293

Query: 1018 LETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLS 839
            L++QF REPTLVEWAEA G  C  LQ+++H GNSSRDKLIYAN RMVVHIAKQYQ RGLS
Sbjct: 294  LQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLS 353

Query: 838  LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLL 659
            LQDLLQEGSMGLMKSVE+FKPQ GCRFATYAYWWIRQ+IRK++ QHSRT+RLPENV++LL
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLL 413

Query: 658  SKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQ 479
            SKV +AKKS +++GNH P+KE++A   G++VE+L+KLL+T R+PLSMQQ VW+DQ+ T+Q
Sbjct: 414  SKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQ 473

Query: 478  EITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGF 299
            E+T DT IE+P+V  +KQ+MRQH RNLLSVL+PRER II+LRFGIE  ++ SLSEIG  F
Sbjct: 474  EVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMF 533

Query: 298  GLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            GLSKERVRQLESRALYKLKQCL+  GL AY D+L+
Sbjct: 534  GLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  625 bits (1612), Expect = 0.0
 Identities = 341/579 (58%), Positives = 432/579 (74%), Gaps = 25/579 (4%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXS-VLLLHEQVTPAVTSLSTTSLGRPPPTSV 1685
            MEA  + ++S   FP  TH+R+        + VL+LHEQ  PAVTS+  TS+ R  PTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1684 LIQDQRNESRPLL-CLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEY---VNDFQL 1517
            L+Q+QR+E +PLL  LKED T + TLD+ Q+    G S  E   ++D D++   VN  + 
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEATLDRMQI--ETGASVHE---DLDIDDFYPLVNGSKP 115

Query: 1516 QLLRRPELWYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAA 1361
            QLL  P++  +++SLQ           +S ++ S     VE  +VVALA++A SA +EAA
Sbjct: 116  QLLN-PDILDVFSSLQTGAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAA 174

Query: 1360 SIAKDARLFGAHLDDPSSIR-GLAS-----VPVRRIVRSTRLLERQTKR----RVPKPKI 1211
            S+A+D++  GA  D+  S+  G  S     V   + VRSTR+LER+ KR    +VPK K+
Sbjct: 175  SLAEDSQSMGADFDESLSLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKL 234

Query: 1210 EIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQE 1031
               E+N     +  +K +EGF+PNDPLR+FLWGPET QLLTAKEE+ELI ++Q+L KL+E
Sbjct: 235  IGHESNSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEE 294

Query: 1030 VRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQG 851
            V+SRL+TQF REPTL+EWAEA G SC +L+SQ+  G SSR+KLIYAN RMVVHIAKQYQG
Sbjct: 295  VKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQG 354

Query: 850  RGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENV 671
            RGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ++RKA+FQHSRTIRLPENV
Sbjct: 355  RGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENV 414

Query: 670  YSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQN 491
            YSLL KV EAKKSC+Q+GNH P KE++A   G++VE+LEKLLY  R+PLSMQQPVW DQ+
Sbjct: 415  YSLLGKVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQD 474

Query: 490  TTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEI 311
            TT+QE+TADT +E+P+V  +KQ+MRQH R+LLS+LN RER+IIRLR+GIE G+Q+SLSEI
Sbjct: 475  TTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEI 534

Query: 310  GAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            G  FGLSKERVRQLESRA  KL+Q L SQGL AY  +L+
Sbjct: 535  GGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
            avium]
          Length = 573

 Score =  625 bits (1611), Expect = 0.0
 Identities = 340/579 (58%), Positives = 433/579 (74%), Gaps = 25/579 (4%)
 Frame = -2

Query: 1855 MEA--NLVTSPPQFPLRTHIRNGXXXXXXXS-VLLLHEQVTPAVTSLSTTSLGRPPPTSV 1685
            MEA  + ++S   FP  TH+R+        + VL+LHEQ  PAVTS+  TS+ R  PTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1684 LIQDQRNESRPLL-CLKEDSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEY---VNDFQL 1517
            L+Q+QR+E +PLL  LKED T + TLD+ Q+    G S  E   ++D D++   VN  + 
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEATLDRMQI--ETGASVHE---DLDIDDFYPLVNGSKP 115

Query: 1516 QLLRRPELWYLWASLQKEE--------QSFSSTSENLTGVEADHVVALAREAFSACKEAA 1361
            QLL  P++  +++SLQ           +S ++ S     VE  +VVALA++A SA +EAA
Sbjct: 116  QLLN-PDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAA 174

Query: 1360 SIAKDARLFGAHLDDPSSI----RGLAS--VPVRRIVRSTRLLERQTKR----RVPKPKI 1211
            S+A+D++  GA  D+  S+      LA+  V     VRSTR+LER+ KR    +VPK K+
Sbjct: 175  SLAEDSQSMGADFDESLSLGLGYTSLANWIVEEETTVRSTRILERRRKRIKTRKVPKSKV 234

Query: 1210 EIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQE 1031
               E+N     +  +K +EGF+PNDPLR+FLWGPET QLLTAKEE+ELI ++Q+L KL+E
Sbjct: 235  IGHESNSFTSSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEE 294

Query: 1030 VRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQG 851
            V++RL+TQF REPTL+EWAEA G SC +L+SQ+  G SSR+KLIYAN RMVVHIAKQYQG
Sbjct: 295  VKTRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQG 354

Query: 850  RGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENV 671
            RGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ++RKA+FQHSRTIRLPENV
Sbjct: 355  RGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENV 414

Query: 670  YSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQN 491
            YSLL KV EAKKSC+Q+GNH P+KE++A   G++VE+LEKLLY  R+PLSMQQPVW DQ+
Sbjct: 415  YSLLGKVLEAKKSCIQEGNHNPSKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQD 474

Query: 490  TTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEI 311
            TT+QE+TADT +E+P+V  +KQ+MRQH R+LLS+LN RER+IIRLR+GIE G+Q+SLSEI
Sbjct: 475  TTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEI 534

Query: 310  GAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 194
            G  FGLSKERVRQLESRA  KL+Q L SQGL AY  +L+
Sbjct: 535  GGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 573