BLASTX nr result
ID: Rehmannia30_contig00034483
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00034483
(439 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KZV34961.1| hypothetical protein F511_04935 [Dorcoceras hygro... 157 1e-54
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 155 2e-54
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro... 138 4e-41
dbj|GAU46320.1| hypothetical protein TSUD_401910 [Trifolium subt... 129 4e-41
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 122 2e-40
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 122 6e-40
gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposo... 127 6e-40
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 125 1e-39
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 125 1e-39
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo... 123 8e-39
dbj|GAU10233.1| hypothetical protein TSUD_417410 [Trifolium subt... 125 1e-38
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 130 1e-38
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo... 134 1e-38
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo... 134 1e-38
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 126 2e-38
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 130 2e-38
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 130 2e-38
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 130 2e-38
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 129 3e-38
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo... 131 3e-38
>gb|KZV34961.1| hypothetical protein F511_04935 [Dorcoceras hygrometricum]
Length = 345
Score = 157 bits (396), Expect(2) = 1e-54
Identities = 72/100 (72%), Positives = 87/100 (87%)
Frame = -2
Query: 300 LCVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLIN 121
LC + GI RHK+ PY+PQQNGV ERMNRTLLERVRSML +SGLSKKFWGE V+TA +LIN
Sbjct: 186 LCEQCGIKRHKTNPYTPQQNGVVERMNRTLLERVRSMLVSSGLSKKFWGECVLTAAFLIN 245
Query: 120 RSPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
RSPSVPL+GK PE VW+GK+ID+S+L+ FGC+AF H++ D
Sbjct: 246 RSPSVPLDGKCPESVWSGKEIDYSHLRTFGCTAFAHKRGD 285
Score = 84.3 bits (207), Expect(2) = 1e-54
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQSLC 293
FL+KNKSDVFD FK WKTL ENQTGK+IK LRTDNGLEFCN L D+ LC
Sbjct: 140 FLLKNKSDVFDSFKNWKTLTENQTGKKIKTLRTDNGLEFCNSLFDE-LC 187
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 155 bits (393), Expect(2) = 2e-54
Identities = 75/101 (74%), Positives = 84/101 (83%)
Frame = -2
Query: 303 NLCVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLI 124
NLC GI RHKSV ++PQQNGVAERMNRTLLERVRSML +SGL K FWGEA++TATYLI
Sbjct: 287 NLCANSGIRRHKSVVHTPQQNGVAERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLI 346
Query: 123 NRSPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
NRSPS+PLNG PE VW GK++D SNL VFG +AFVH K D
Sbjct: 347 NRSPSMPLNGDLPESVWCGKKVDLSNLHVFGYAAFVHHKGD 387
Score = 84.3 bits (207), Expect(2) = 2e-54
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQSLC 293
FL+K KSDVFDKFKTWKTLIENQTGKRIK LRTDNG+EFCN D +LC
Sbjct: 242 FLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFD-NLC 289
>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
Length = 1309
Score = 138 bits (347), Expect(2) = 4e-41
Identities = 65/101 (64%), Positives = 78/101 (77%)
Frame = -2
Query: 303 NLCVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLI 124
+ C + GIVRH +VP +PQQNG+AERMNRT+LERVR ML SGL + FW EAVVTA+YLI
Sbjct: 552 DFCKQEGIVRHYTVPNTPQQNGLAERMNRTILERVRCMLADSGLPRMFWAEAVVTASYLI 611
Query: 123 NRSPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
NR PS L K P+EVWTG + DFSNL+ FGC+AF H + D
Sbjct: 612 NRCPSTALEFKTPQEVWTGHRPDFSNLRAFGCTAFAHIRQD 652
Score = 57.8 bits (138), Expect(2) = 4e-41
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = -1
Query: 433 MKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCN 317
+K+K + F FK WK ++E QTGK+IK LRTDNGLE+C+
Sbjct: 509 LKSKDEAFKAFKDWKMMVETQTGKKIKKLRTDNGLEYCS 547
>dbj|GAU46320.1| hypothetical protein TSUD_401910 [Trifolium subterraneum]
Length = 1006
Score = 129 bits (323), Expect(2) = 4e-41
Identities = 65/108 (60%), Positives = 76/108 (70%)
Frame = -2
Query: 324 FVIN*LINLCVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAV 145
FV C + GI RH++V Y+PQQNG+AERMNRTLLERVR ML +GL K FWGEAV
Sbjct: 376 FVSEQFNEFCRKKGIKRHRTVAYTPQQNGLAERMNRTLLERVRYMLLGAGLPKSFWGEAV 435
Query: 144 VTATYLINRSPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
TA YLINR PS ++ K P EVW+GK D+S LK+FG AF H K D
Sbjct: 436 NTAAYLINRCPSAGIDLKTPMEVWSGKPADYSKLKIFGALAFAHVKQD 483
Score = 67.0 bits (162), Expect(2) = 4e-41
Identities = 29/45 (64%), Positives = 38/45 (84%)
Frame = -1
Query: 436 LMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQ 302
++KNKSDVF+KFK W TLIENQ G ++KVLRTDNGLEF ++ ++
Sbjct: 339 IIKNKSDVFEKFKEWHTLIENQIGTKLKVLRTDNGLEFVSEQFNE 383
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 122 bits (306), Expect(2) = 2e-40
Identities = 58/99 (58%), Positives = 70/99 (70%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C GI RH++ +PQQNG+AER NRT+LERVR ML ++GL K FW EAV TATYLINR
Sbjct: 554 CAASGIARHRTTAGTPQQNGLAERFNRTILERVRCMLTSAGLKKVFWAEAVSTATYLINR 613
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
PS L+ K PEEVW+G D L+VFGC A+ H + D
Sbjct: 614 CPSTALDMKTPEEVWSGHPPDLDKLRVFGCVAYAHIRQD 652
Score = 71.2 bits (173), Expect(2) = 2e-40
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLID 305
F+ K K + F+ FK+WKTL+ENQTG+++K LRTDNGLEFCN+ D
Sbjct: 507 FIQKTKDETFENFKSWKTLVENQTGRKVKRLRTDNGLEFCNEAFD 551
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 122 bits (307), Expect(2) = 6e-40
Identities = 56/95 (58%), Positives = 70/95 (73%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GI RH++V +PQQNGVAERMN+TLLER R ML +GL ++FW EAV TA YLINR
Sbjct: 553 CKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINR 612
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
P + K P E+W+GK D+SNLK FGC+A+ H
Sbjct: 613 GPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYH 647
Score = 69.3 bits (168), Expect(2) = 6e-40
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQ 302
++MK+KS+ F KFK WK L+ENQTGK+IK LRTDNGLEFC DQ
Sbjct: 506 YMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQ 551
>gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 993
Score = 127 bits (320), Expect(2) = 6e-40
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRHK+V ++PQQNG+AERMNRTLL+RVR +L +SGLSK FWGEA+ TA YL+NR
Sbjct: 502 CSDSGIVRHKTVSHTPQQNGLAERMNRTLLDRVRCLLFSSGLSKFFWGEALSTACYLVNR 561
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQ 10
+PS +N K P+E+W GK ++L+VFGC A+ HQ
Sbjct: 562 TPSSAINFKTPQELWKGKPPSLTHLRVFGCLAYPHQ 597
Score = 64.3 bits (155), Expect(2) = 6e-40
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQ 314
FL+K+K + F KF WK+++ENQ +++KVLRTDNGLEFCN+
Sbjct: 455 FLLKSKDETFSKFLEWKSMVENQKNRKLKVLRTDNGLEFCNE 496
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 125 bits (313), Expect(2) = 1e-39
Identities = 57/95 (60%), Positives = 75/95 (78%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH++V ++PQQNGVAERMN+TL++R R M +GLSKKFW EAV TA YL+NR
Sbjct: 887 CRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNR 946
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS ++ K P+EVW+GK ++S LK+FGC A+ H
Sbjct: 947 SPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAH 981
Score = 65.9 bits (159), Expect(2) = 1e-39
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQ 302
+ +K K +VF KFK WKT++E +TGK +K LRTDNGLEFCN+ D+
Sbjct: 840 YFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDE 885
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 125 bits (313), Expect(2) = 1e-39
Identities = 57/95 (60%), Positives = 75/95 (78%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH++V ++PQQNGVAERMN+TL++R R M +GLSKKFW EAV TA YL+NR
Sbjct: 674 CRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNR 733
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS ++ K P+EVW+GK ++S LK+FGC A+ H
Sbjct: 734 SPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAH 768
Score = 65.9 bits (159), Expect(2) = 1e-39
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQ 302
+ +K K +VF KFK WKT++E +TGK +K LRTDNGLEFCN+ D+
Sbjct: 627 YFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDE 672
>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 634
Score = 123 bits (309), Expect(2) = 8e-39
Identities = 57/99 (57%), Positives = 73/99 (73%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C E G+ RHK+V +PQ+NG+AER NRT+LERVR ML +GL K FW EAV +A Y INR
Sbjct: 221 CRENGVARHKTVRGTPQKNGLAERFNRTILERVRCMLNHAGLPKSFWVEAVSSAVYCINR 280
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
PS L K P+EVW+G+++D+S L+VFGC A+ H K D
Sbjct: 281 CPSTALEFKTPQEVWSGRKVDYSELRVFGCIAYAHIKQD 319
Score = 64.7 bits (156), Expect(2) = 8e-39
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQ 314
+ +K K++VFD+FK WK L+E QTG+ +K LRTDNGLEFC++
Sbjct: 174 YFLKQKNEVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDE 215
>dbj|GAU10233.1| hypothetical protein TSUD_417410 [Trifolium subterraneum]
Length = 987
Score = 125 bits (315), Expect(2) = 1e-38
Identities = 64/108 (59%), Positives = 75/108 (69%)
Frame = -2
Query: 324 FVIN*LINLCVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAV 145
FV C + GI RH++V Y+PQQNG+AERMNRTLLERVR ML +GL K FWGEAV
Sbjct: 628 FVSEQFNEFCRKKGIKRHRTVAYTPQQNGLAERMNRTLLERVRCMLLGAGLPKSFWGEAV 687
Query: 144 VTATYLINRSPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
TA YLINR PS ++ K P EVW+ K D+SNLK+FG AF K D
Sbjct: 688 NTAAYLINRCPSTGIDLKTPMEVWSDKPTDYSNLKIFGALAFARVKQD 735
Score = 62.0 bits (149), Expect(2) = 1e-38
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = -1
Query: 436 LMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQ 302
++KNKSD F+KFK W TLIENQ G ++KVLRT+NGL+F ++ ++
Sbjct: 591 IIKNKSDAFEKFKEWHTLIENQIGTKLKVLRTNNGLKFVSEQFNE 635
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 130 bits (326), Expect(2) = 1e-38
Identities = 57/95 (60%), Positives = 74/95 (77%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH ++PY+PQQNGVAERMNRT++ + R ML + ++K+FW EA TA YLINR
Sbjct: 568 CRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINR 627
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS+PLN K P EVW+G D+S L+VFGC+A+ H
Sbjct: 628 SPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAH 662
Score = 57.4 bits (137), Expect(2) = 1e-38
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLID 305
+ +K+K D F FK WK IE QT K +KVLRTDNG EFC+ D
Sbjct: 521 YFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFD 565
>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 780
Score = 134 bits (336), Expect(2) = 1e-38
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C GI RH++VP++PQQNG+AERMNRT+LERVR ML SGLSKKFWGEA TA YLINR
Sbjct: 559 CRNQGIKRHRTVPHTPQQNGLAERMNRTILERVRCMLLGSGLSKKFWGEAATTAAYLINR 618
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQK 7
PS LN K P E W GK +D+SNL+VFG A+ H K
Sbjct: 619 CPSSALNNKTPMEAWHGKPVDYSNLRVFGSLAYAHVK 655
Score = 53.5 bits (127), Expect(2) = 1e-38
Identities = 21/42 (50%), Positives = 34/42 (80%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQ 314
+++K+K++ + KF+ W TLI+NQ ++KVLRTDNGLEF ++
Sbjct: 512 YVLKDKTETYKKFRDWYTLIQNQLETKLKVLRTDNGLEFLSE 553
>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 498
Score = 134 bits (336), Expect(2) = 1e-38
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C GI RH++VP++PQQNG+AERMNRT+LERVR ML SGLSKKFWGEA TA YLINR
Sbjct: 156 CRNQGIKRHRTVPHTPQQNGLAERMNRTILERVRCMLLGSGLSKKFWGEAATTAAYLINR 215
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQK 7
PS LN K P E W GK +D+SNL+VFG A+ H K
Sbjct: 216 CPSSALNNKTPMEAWHGKPVDYSNLRVFGSLAYAHVK 252
Score = 53.5 bits (127), Expect(2) = 1e-38
Identities = 21/42 (50%), Positives = 34/42 (80%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQ 314
+++K+K++ + KF+ W TLI+NQ ++KVLRTDNGLEF ++
Sbjct: 109 YVLKDKTETYKKFRDWYTLIQNQLETKLKVLRTDNGLEFLSE 150
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 126 bits (316), Expect(2) = 2e-38
Identities = 58/101 (57%), Positives = 77/101 (76%)
Frame = -2
Query: 303 NLCVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLI 124
NLC E GI RH++ Y+PQQNGV+ERMN+T+++ VRSML +G+S++FW EA TA YLI
Sbjct: 462 NLCKEDGIKRHRTCTYTPQQNGVSERMNKTIMDIVRSMLAETGMSQEFWAEATSTAVYLI 521
Query: 123 NRSPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVHQKHD 1
NR+P+ + K PEEVWTG + D S+L+ FGCSA+VH D
Sbjct: 522 NRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQD 562
Score = 60.8 bits (146), Expect(2) = 2e-38
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLIDQSLC 293
+ +K K + + KF+ WK +ENQTGK+IK LRTDNGLEF N D +LC
Sbjct: 417 YFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEFYNTQFD-NLC 464
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1373
Score = 130 bits (327), Expect(2) = 2e-38
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH ++P++PQQNGVAERMNRT++ R R ML + ++K+FW EA TA YLINR
Sbjct: 567 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 626
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS+PLN K P EVW+G D+S LKVFGC+A+ H
Sbjct: 627 SPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAH 661
Score = 56.2 bits (134), Expect(2) = 2e-38
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCN 317
+ +K+K D F FK WK +IE QT +++K+LRTDNG EFC+
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCS 560
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 130 bits (327), Expect(2) = 2e-38
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH ++P++PQQNGVAERMNRT++ R R ML + ++K+FW EA TA YLINR
Sbjct: 567 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 626
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS+PLN K P EVW+G D+S LKVFGC+A+ H
Sbjct: 627 SPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAH 661
Score = 56.2 bits (134), Expect(2) = 2e-38
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCN 317
+ +K+K D F FK WK +IE QT +++K+LRTDNG EFC+
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCS 560
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 130 bits (327), Expect(2) = 2e-38
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH ++P++PQQNGVAERMNRT++ R R ML + ++K+FW EA TA YLINR
Sbjct: 567 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 626
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS+PLN K P EVW+G D+S LKVFGC+A+ H
Sbjct: 627 SPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAH 661
Score = 56.2 bits (134), Expect(2) = 2e-38
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCN 317
+ +K+K D F FK WK +IE QT +++K+LRTDNG EFC+
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCS 560
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 129 bits (325), Expect(2) = 3e-38
Identities = 56/95 (58%), Positives = 74/95 (77%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C + GIVRH ++PY+PQQNGVAERMNRT++ + R ML + ++K+FW EA TA YLINR
Sbjct: 568 CRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINR 627
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
SPS+PLN K P E+W+G D+S L+VFGC+A+ H
Sbjct: 628 SPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAH 662
Score = 56.6 bits (135), Expect(2) = 3e-38
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEFCNQLID 305
+ +K+K D F FK WK +IE QT K +KVLRTDN EFC+ D
Sbjct: 521 YFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFD 565
>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1269
Score = 131 bits (329), Expect(2) = 3e-38
Identities = 63/95 (66%), Positives = 73/95 (76%)
Frame = -2
Query: 297 CVEFGIVRHKSVPYSPQQNGVAERMNRTLLERVRSMLGTSGLSKKFWGEAVVTATYLINR 118
C E GI ++VP +PQQNGVAERMNRTL ER RSM SGL K+FW EAV TA YLINR
Sbjct: 531 CYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRMQSGLPKQFWAEAVNTAAYLINR 590
Query: 117 SPSVPLNGKYPEEVWTGKQIDFSNLKVFGCSAFVH 13
PSVPL K PEEVW+GK++ S+L+VFGC A+VH
Sbjct: 591 GPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVH 625
Score = 55.1 bits (131), Expect(2) = 3e-38
Identities = 22/39 (56%), Positives = 32/39 (82%)
Frame = -1
Query: 439 FLMKNKSDVFDKFKTWKTLIENQTGKRIKVLRTDNGLEF 323
+ +K+KS+VF+ FK WK ++EN+TG +IK LRTDNG E+
Sbjct: 484 YFLKHKSEVFEAFKMWKAMVENETGLKIKKLRTDNGGEY 522