BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00034384
         (700 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   349   e-108
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   331   e-108
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   327   e-106
gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo...   323   e-103
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   331   e-102
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   322   e-100
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   320   5e-98
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   308   2e-97
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   318   4e-97
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   310   2e-93
gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]   303   4e-93
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     304   1e-91
dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subt...   301   1e-90
gb|KYP33374.1| Retrovirus-related Pol polyprotein from transposo...   281   2e-90
gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   275   2e-89
gb|KYP60819.1| Retrovirus-related Pol polyprotein from transposo...   286   9e-89
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   294   2e-88
gb|KYP51066.1| Retrovirus-related Pol polyprotein from transposo...   275   3e-88
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   288   8e-88
gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]            290   2e-87

>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  349 bits (896), Expect = e-108
 Identities = 163/238 (68%), Positives = 194/238 (81%), Gaps = 6/238 (2%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG VK L+NG   + T+V+Y+P+L+NNLLSIGQLQE+GLAILIKGG CKI+HP+KGLII
Sbjct: 332  GKGSVKFLLNGTNFIVTEVYYIPELRNNLLSIGQLQEKGLAILIKGGMCKIFHPEKGLII 391

Query: 185  QTDMSANRMFVLFSQQQ------QNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMV 346
            QT+MS NRMF L SQ Q       ++C  T +Q++SHLWH+RYGHLSYKGLRTL  K MV
Sbjct: 392  QTNMSTNRMFTLRSQAQVSPQAQSDQCFHTKAQDLSHLWHRRYGHLSYKGLRTLLYKNMV 451

Query: 347  HGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYT 526
             GLP F  S  +CT+CI GK HR+PIPKKS+WRA+Q L+L+HAD+CGPI+P SNSNKRY 
Sbjct: 452  RGLPQFSISSVICTNCINGKQHRDPIPKKSNWRATQKLELIHADVCGPISPSSNSNKRYI 511

Query: 527  LCFIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            L FIDDYSRKSW+Y+L+EKSE LN FKCFK MVE E  + IKCLRTDRGGEF S+EFN
Sbjct: 512  LLFIDDYSRKSWVYFLVEKSEALNSFKCFKTMVEKEAEMAIKCLRTDRGGEFNSNEFN 569


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  331 bits (848), Expect = e-108
 Identities = 154/236 (65%), Positives = 191/236 (80%), Gaps = 3/236 (1%)
 Frame = +2

Query: 2   TGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLI 181
           TGKG V+L I GVT + TDVF VP+LKNNLLSIGQLQE+GL ++ + G CK+YHPDKGLI
Sbjct: 30  TGKGSVRLNIKGVTHIITDVFLVPELKNNLLSIGQLQEKGLTVMFQSGTCKLYHPDKGLI 89

Query: 182 IQTDMSANRMFVLFSQQQQNK--CLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGL 355
           ++T+M+ NRMF+LF+Q    K  C   S+Q++S LWH+RY HLS+KGLR LQ+K MV GL
Sbjct: 90  LETNMTTNRMFILFAQSATKKDSCFHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGL 149

Query: 356 PN-FPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLC 532
           P+    ++++C DC+ GK HR+PIPKKS WRA Q L+L+HADICGPI P SNS KRY LC
Sbjct: 150 PSSLSTTEKVCEDCMKGKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNSQKRYFLC 209

Query: 533 FIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
           FIDDY+RK+WIY+L EKSE  ++F+CFK +VE E+GL IKCLRTDRGGEFTSSEFN
Sbjct: 210 FIDDYTRKAWIYFLTEKSEAFHYFQCFKNLVEKESGLMIKCLRTDRGGEFTSSEFN 265


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 560

 Score =  327 bits (838), Expect = e-106
 Identities = 153/234 (65%), Positives = 190/234 (81%), Gaps = 2/234 (0%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG V+L +NG T V T+VFYVP+LKNNLLSIGQLQE+GL+ILI+ G+CKIYHP+KGL+I
Sbjct: 308  GKGNVRLKVNGFTHVVTEVFYVPELKNNLLSIGQLQEKGLSILIQNGSCKIYHPEKGLVI 367

Query: 185  QTDMSANRMFVLFS--QQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
            QT+M+ NRMFVL +    Q+  CL T+ Q ++HLWH RYGHLS+KGLRTLQ KKMVHGLP
Sbjct: 368  QTEMTTNRMFVLTAVPMPQKPTCLHTTVQEIAHLWHCRYGHLSHKGLRTLQYKKMVHGLP 427

Query: 359  NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
                  ++CT C+IGK HR+PIPKK++WRA+Q L L+HADICGPI+P SNS KRY +CFI
Sbjct: 428  PLKSPTDVCTVCMIGKQHRDPIPKKANWRATQKLQLIHADICGPISPTSNSKKRYLICFI 487

Query: 539  DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            DD++ K+WIY+++EKSE L  FK +K  VE E+G  IKCLRTD+GGEF S EFN
Sbjct: 488  DDFTMKTWIYFMVEKSEALVIFKHYKNYVEKESGCSIKCLRTDQGGEFVSLEFN 541


>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  323 bits (828), Expect = e-103
 Identities = 153/236 (64%), Positives = 186/236 (78%), Gaps = 3/236 (1%)
 Frame = +2

Query: 2    TGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLI 181
            TGKG V+L I GVT V TDVF VP+LKNNLLSIGQLQE+GL ++ + G CK+YHPDKGLI
Sbjct: 338  TGKGSVRLNIKGVTHVITDVFLVPELKNNLLSIGQLQEKGLTVMFQSGTCKLYHPDKGLI 397

Query: 182  IQTDMSANRMFVLFSQQQQNK--CLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGL 355
            ++T+M+ N MF+LF+Q    K  C   S+Q++S LWH RY HLS+KGLR LQ+K MV GL
Sbjct: 398  LETNMTTNIMFILFAQSATKKDSCFHISTQDLSSLWHHRYAHLSHKGLRILQSKGMVRGL 457

Query: 356  PN-FPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLC 532
            P+    ++ +C DC  GK HR+PIPKKS WRA Q L+L+HADICGPITP SNS KRY LC
Sbjct: 458  PSSLSTTENVCEDCTKGKQHRDPIPKKSQWRAKQKLELIHADICGPITPSSNSQKRYFLC 517

Query: 533  FIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            FIDDYSRK+WIY+L +KSE  ++F+CFK +VE E+GL IKCL TDRGGEFTS EFN
Sbjct: 518  FIDDYSRKTWIYFLTKKSEAFHYFQCFKNLVEKESGLMIKCLITDRGGEFTSLEFN 573


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  331 bits (849), Expect = e-102
 Identities = 160/240 (66%), Positives = 187/240 (77%), Gaps = 7/240 (2%)
 Frame = +2

Query: 2    TGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLI 181
            +GKG VKL +NGV  V  DVFYVP+LKNNLLSIGQLQERGLAILI  G CKIYHP KGLI
Sbjct: 394  SGKGNVKLEVNGVNCVIGDVFYVPELKNNLLSIGQLQERGLAILIHYGKCKIYHPQKGLI 453

Query: 182  IQTDMSANRMFVL-------FSQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKK 340
            IQ++M+ANRMFVL        S   Q  C  T++Q+++HLWH R GH+S  GL+TLQ KK
Sbjct: 454  IQSEMTANRMFVLVARIEPTLSDSNQEICFNTTTQDLTHLWHCRLGHISNTGLQTLQRKK 513

Query: 341  MVHGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKR 520
            MVHGLP  P  D +C DC+ GK HR PIPK+S+WRA+Q L+L+HAD+CGPI+PISNS K+
Sbjct: 514  MVHGLPQLPALDVVCVDCLKGKQHREPIPKRSTWRATQRLELIHADLCGPISPISNSGKK 573

Query: 521  YTLCFIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            Y LC IDDYSRK+W Y+L EKSET   FK FK +VE ET L IKCLRTDRGGEFTS+EFN
Sbjct: 574  YVLCLIDDYSRKAWSYFLNEKSETFAVFKFFKILVEKETSLAIKCLRTDRGGEFTSAEFN 633


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  322 bits (825), Expect = e-100
 Identities = 153/234 (65%), Positives = 184/234 (78%), Gaps = 2/234 (0%)
 Frame = +2

Query: 5   GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
           GKG V+L  NGVT V TDV+Y+P+LKNNLLSIGQLQE+G+ ILI+ G C+IYHP KGLI+
Sbjct: 58  GKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVTILIRNGMCQIYHPRKGLIM 117

Query: 185 QTDMSANRMFVLFSQQ--QQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
           QT MSANRMFV+ +    Q + C  T S++ +HLWH RYGHLS+KGLRTLQ +KMV GLP
Sbjct: 118 QTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLP 177

Query: 359 NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
           +F  S +LC DC++GK HR  IPKKS WRAS  L L+H+DICGPI P+SNS KRY + FI
Sbjct: 178 DFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFI 237

Query: 539 DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
           DDYSRK+W+Y+L EKS+    FK FK +VE ETG  I+CLRTDRGGEFTS EFN
Sbjct: 238 DDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFN 291


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  320 bits (821), Expect = 5e-98
 Identities = 152/234 (64%), Positives = 184/234 (78%), Gaps = 2/234 (0%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG V+L  NGVT V TDV+Y+P+LKNNLLSIGQLQE+G+ ILI+ G C+IYHP KGLI+
Sbjct: 339  GKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVTILIRNGMCQIYHPRKGLIM 398

Query: 185  QTDMSANRMFVLFSQQ--QQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
            QT MSANRMFV+ +    Q + C  T S++ +HLWH RYGHLS+KGLR+LQ +KMV GLP
Sbjct: 399  QTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLP 458

Query: 359  NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
            +F  S +LC DC++GK HR  IPKKS WRAS  L L+H+DICGPI P+SNS KRY + FI
Sbjct: 459  DFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFI 518

Query: 539  DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            DDYSRK+W+Y+L EKS+    FK FK +VE ETG  I+CLRTDRGGEFTS EFN
Sbjct: 519  DDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFN 572


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  308 bits (789), Expect = 2e-97
 Identities = 146/235 (62%), Positives = 180/235 (76%), Gaps = 3/235 (1%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG ++L ++G+T V +DV++VP+L+NNLLSIGQLQE+GLAILI+ G CKIYH  KGLI+
Sbjct: 349  GKGSIRLKVDGLTQVISDVYFVPELRNNLLSIGQLQEKGLAILIQHGVCKIYHSKKGLIM 408

Query: 185  QTDMSANRMFVLFSQ---QQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGL 355
            QT M+ANRMFVL +       + C+  SS ++SHLWH RY HL+YKGL+TL  +KMV GL
Sbjct: 409  QTPMTANRMFVLLANVVVTDFSTCMQASSDDLSHLWHCRYSHLNYKGLKTLHYRKMVKGL 468

Query: 356  PNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCF 535
            P    S  +C DC++GK  R+ IPK S WRASQ L LVHADICGPITP SNS+KRY L F
Sbjct: 469  PQIKASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLVHADICGPITPTSNSDKRYVLSF 528

Query: 536  IDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            IDD+SRK W+Y+L EKS+    FK +K +VE E G PI CLRTDRGGEFTS+EFN
Sbjct: 529  IDDFSRKMWVYFLTEKSQAFTMFKRYKSLVEKEIGFPICCLRTDRGGEFTSNEFN 583


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  318 bits (814), Expect = 4e-97
 Identities = 150/234 (64%), Positives = 183/234 (78%), Gaps = 2/234 (0%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG V+L  NGVT V TDV+Y+P+LKNNLLSIGQLQE+G+AILI+ G C+IYHP KGLI+
Sbjct: 337  GKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVAILIQNGMCQIYHPRKGLIM 396

Query: 185  QTDMSANRMFVLFSQQ--QQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
            QT MSANRMFV+ +    Q + C  T S++ +HLWH RYGHLS+KGL+TLQ + MV GLP
Sbjct: 397  QTKMSANRMFVILANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLP 456

Query: 359  NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
            +F    +LC DC++GK HR  IPKKS WRAS  L L+H+DICGPI P+SN+ KRY + FI
Sbjct: 457  DFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNNRKRYLISFI 516

Query: 539  DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            DDYSRK+W+Y+L EKS+    FK FK +VE ETG  I+CLRTDRGGEFTS EFN
Sbjct: 517  DDYSRKTWVYFLNEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFN 570


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  310 bits (793), Expect = 2e-93
 Identities = 143/237 (60%), Positives = 182/237 (76%), Gaps = 6/237 (2%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG V+L + GV  +  DV+YVP LKNNLLS+GQLQERGLA+L++   C+IYH  KGL+ 
Sbjct: 335  GKGSVRLNVKGVNYLVRDVYYVPGLKNNLLSVGQLQERGLAVLMQSNECRIYHHTKGLVF 394

Query: 185  QTDMSANRMFVLFSQQQQNK------CLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMV 346
            QT+M+ANRMFVL S  Q  K      C   ++ +++HLWH+R+GHLSYKGL+TLQ K MV
Sbjct: 395  QTNMTANRMFVLLSSTQSIKKENKEECFQVTTDDVAHLWHRRFGHLSYKGLKTLQTKNMV 454

Query: 347  HGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYT 526
             GLP+F   + +CT+C+ GK HR+ I ++S+WRAS+ L+LVHADICGPI+P S  NKRY 
Sbjct: 455  RGLPSFSVGEIVCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYF 514

Query: 527  LCFIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEF 697
            +CFIDDYSRK+W+Y+L  KS+    FK FK +VE ETGL IKCLRTDRGGEFTS+EF
Sbjct: 515  ICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEF 571


>gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1017

 Score =  303 bits (776), Expect = 4e-93
 Identities = 141/237 (59%), Positives = 180/237 (75%), Gaps = 6/237 (2%)
 Frame = +2

Query: 5   GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
           GKG V+L + GV  +  DV+YVP LKNNLLS+GQLQERGLA+L++   C+IYH  KGL+ 
Sbjct: 31  GKGSVRLNVKGVNYLVRDVYYVPGLKNNLLSVGQLQERGLAVLMQSNECRIYHHTKGLVF 90

Query: 185 QTDMSANRMFVLFSQQQQNK------CLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMV 346
           QT+M+ANRMFVL S  Q  K      C   +++ ++HLWH+R+GHLSYKGL+TLQ K MV
Sbjct: 91  QTNMTANRMFVLLSSTQSIKKENKEECFQVTTEYVAHLWHRRFGHLSYKGLKTLQTKGMV 150

Query: 347 HGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYT 526
            GLP F + + +C +C+ GK HR+ I ++S+WRAS+ L+LVHADICGPI+P S  NKRY 
Sbjct: 151 RGLPCFSEGEIVCKNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYF 210

Query: 527 LCFIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEF 697
           +CFIDDYSRK+W+Y+L  KS+    FK FK +VE ET L IKCLRTDRGGEFTS+EF
Sbjct: 211 ICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEF 267


>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  304 bits (778), Expect = 1e-91
 Identities = 142/233 (60%), Positives = 180/233 (77%), Gaps = 2/233 (0%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG V+L +N +T + T VFYVP+LKNNLLSIGQLQE+GL IL + G CK++H  KGLI+
Sbjct: 360  GKGNVRLKVNEMTQIITGVFYVPELKNNLLSIGQLQEKGLTILFQHGKCKVFHSQKGLIM 419

Query: 185  QTDMSANRMFVLF--SQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
             T MS+NRMF+L+  SQ   + C  T ++++  LWH RYGHLS++GL+TLQ +KMV+GLP
Sbjct: 420  DTKMSSNRMFMLYALSQPISSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLP 479

Query: 359  NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
             F    +LC DC++GK HR+ IPKKS+WRA+++L LVHADICGPI PISNS KRY L F 
Sbjct: 480  QFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFT 539

Query: 539  DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEF 697
            DD+SRK+W+Y+L+EKSE    FK FK  VE ET   ++CLRTDRGGEFTS EF
Sbjct: 540  DDFSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEF 592


>dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subterraneum]
          Length = 1608

 Score =  301 bits (772), Expect = 1e-90
 Identities = 147/235 (62%), Positives = 174/235 (74%), Gaps = 5/235 (2%)
 Frame = +2

Query: 8    KGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLIIQ 187
            KG +++ INGVT V +DV++VP+LKNNLLS+GQLQE+GLAILI+   CK++HPDKGLI+ 
Sbjct: 340  KGSIRVQINGVTQVISDVYFVPELKNNLLSLGQLQEKGLAILIQNNTCKVFHPDKGLIMH 399

Query: 188  TDMSANRMFVLFSQQQQNK---CLLTS--SQNMSHLWHQRYGHLSYKGLRTLQNKKMVHG 352
            T M  NRMF L      NK   CL     S+  + LWH R+GHL+YKGL TL NKKMV G
Sbjct: 400  TSMKGNRMFYLTVSAAPNKHSMCLQAEMMSEKETQLWHSRFGHLNYKGLNTLSNKKMVIG 459

Query: 353  LPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLC 532
            LP+     ++CT C+IGK HR  IPKKSSWRAS+ L LVHADICGPITP SNSNKRY L 
Sbjct: 460  LPSLKSPKKICTTCLIGKQHRESIPKKSSWRASKKLQLVHADICGPITPSSNSNKRYILS 519

Query: 533  FIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEF 697
            FIDD++RK+WIY+L EKSE    FK FK  VE E G  I CLRTDRGGEF S+EF
Sbjct: 520  FIDDFTRKAWIYFLHEKSEAFGRFKNFKACVEKEVGAFITCLRTDRGGEFISNEF 574


>gb|KYP33374.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 421

 Score =  281 bits (720), Expect = 2e-90
 Identities = 135/232 (58%), Positives = 172/232 (74%), Gaps = 2/232 (0%)
 Frame = +2

Query: 5   GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
           GKG V+L +NG T +  DV +VPDL+NNLLSIGQLQE+GL+IL + G CK++H + GL+I
Sbjct: 172 GKGNVRLRMNGTTYIVIDVIFVPDLRNNLLSIGQLQEKGLSILFQHGKCKVFHLENGLVI 231

Query: 185 QTDMSANRMFVLF--SQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
           +T +SANRM++L   S   ++ C  + +++  HLWH RYGHLS++GL TL  + MV+GLP
Sbjct: 232 ETKISANRMYLLHVSSPPAKSTCFHSVTKDKMHLWHCRYGHLSFQGLNTLYQQYMVYGLP 291

Query: 359 NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
                  LC DC+IGK  R+  PKKS+WRA+QVL L+HADICGPITPISNS KRY L FI
Sbjct: 292 MMKAPTNLCQDCLIGKQSRDSFPKKSNWRATQVLQLIHADICGPITPISNSKKRYLLTFI 351

Query: 539 DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSE 694
           DD+SRK+WIY+L+ KSE L+ FK FK  VE E    I+ LRTDRGGEFT  E
Sbjct: 352 DDFSRKTWIYFLIAKSEALSIFKIFKVHVEKEANSLIRSLRTDRGGEFTLQE 403


>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  275 bits (703), Expect = 2e-89
 Identities = 129/232 (55%), Positives = 164/232 (70%)
 Frame = +2

Query: 5   GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
           GKG +KL + G   V +DV+Y+P+LKNNLLSIGQLQ++ L I+     CKI+H +KGLII
Sbjct: 5   GKGNLKLHLEGKISVISDVYYLPNLKNNLLSIGQLQQKNLTIVFSKNTCKIFHEEKGLII 64

Query: 185 QTDMSANRMFVLFSQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLPNF 364
            T M+ANRM+VL +     +CL+   +++ H+WH RYGHL++KGL TL  + MV GLP  
Sbjct: 65  STPMTANRMYVLLAPVMMPQCLVAKHEDIEHIWHCRYGHLNFKGLVTLAKRTMVKGLPIL 124

Query: 365 PKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFIDD 544
             S ELC DC+I KHHR+ IPK +SWRAS  L+L+H+DICGPI P SN   RY + F DD
Sbjct: 125 KDSAELCPDCVISKHHRDSIPKTASWRASSKLELIHSDICGPINPSSNGGCRYFITFTDD 184

Query: 545 YSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
           +SRK+W Y L  KS     F+ FK +VE E    IKCLRTDRGGEFTSS+FN
Sbjct: 185 FSRKTWTYPLKNKSSAFEVFRKFKALVEKELDHQIKCLRTDRGGEFTSSQFN 236


>gb|KYP60819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 722

 Score =  286 bits (731), Expect = 9e-89
 Identities = 141/239 (58%), Positives = 174/239 (72%), Gaps = 7/239 (2%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG V++ + G T+  T+VFY PDLK+NLLSIGQLQER L+ILIK G C IYH  +GLII
Sbjct: 316  GKGNVRMKLGGRTVTITEVFYTPDLKSNLLSIGQLQERNLSILIKNGCCSIYHDTEGLII 375

Query: 185  QTDMSANRMFVLFSQQ-------QQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKM 343
            +T +SANRMFVL +          +  CL  +S+N++ LWHQR+GHL+ KGLRTL  +KM
Sbjct: 376  RTTISANRMFVLTASIPVVDTNISKAACLNVTSENITSLWHQRFGHLNMKGLRTLAYRKM 435

Query: 344  VHGLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRY 523
            V GLP      +LCT C+ GK  R+  P+KS+WRAS+ L L+H+DICGPITP S+S+KRY
Sbjct: 436  VQGLPILKNQFKLCTICMTGKQQRHSFPQKSTWRASKPLQLIHSDICGPITPESHSHKRY 495

Query: 524  TLCFIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
             L FIDDYSRK W Y+L  KSE  + FK FK ++E  TG  I CLRTDRGGEFTSSEFN
Sbjct: 496  ILTFIDDYSRKMWSYFLHAKSEAFDTFKRFKSLIEKATGYYITCLRTDRGGEFTSSEFN 554


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  294 bits (752), Expect = 2e-88
 Identities = 135/234 (57%), Positives = 172/234 (73%), Gaps = 2/234 (0%)
 Frame = +2

Query: 2    TGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLI 181
            TG G V+L +NG+  V T+V+Y+P+LKNNLLSIGQLQE+GL +LI+ G CK+ HP +G I
Sbjct: 337  TGIGSVRLWVNGIVQVITNVYYIPELKNNLLSIGQLQEKGLTVLIQNGTCKVLHPSRGPI 396

Query: 182  IQTDMSANRMFVLFSQQQQN--KCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGL 355
            + +DMS NRMF   ++      KC+   + + S LWH R+GHL+YKGLRTL  + MV GL
Sbjct: 397  MHSDMSGNRMFYFLAKMVSTLPKCMQVEADDESRLWHSRFGHLNYKGLRTLAYRGMVEGL 456

Query: 356  PNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCF 535
            P      +LCT C++GK HR+PIPK++ WRA+  L LVH+DICGPI+PISNSNKRY L F
Sbjct: 457  PTVKTPQKLCTHCLVGKQHRDPIPKRNLWRATHKLQLVHSDICGPISPISNSNKRYILSF 516

Query: 536  IDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEF 697
            IDD++RK+WIY+L +KSE L  FK FK   E E G  IKCLRTDRGGE+ S EF
Sbjct: 517  IDDFTRKTWIYFLNQKSEALEAFKGFKTWTEKEAGTSIKCLRTDRGGEYNSKEF 570


>gb|KYP51066.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 392

 Score =  275 bits (703), Expect = 3e-88
 Identities = 133/236 (56%), Positives = 167/236 (70%), Gaps = 4/236 (1%)
 Frame = +2

Query: 2   TGKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLI 181
           T KG +++ ING + V T+V+YVP+LK NLLS+GQLQE+GLA+L +   CKIYHPD+GLI
Sbjct: 50  TTKGSIRIQINGTSHVITNVYYVPELKTNLLSLGQLQEKGLAVLFQNDTCKIYHPDRGLI 109

Query: 182 IQTDMSANRMFVLFSQQ--QQNKCLLT--SSQNMSHLWHQRYGHLSYKGLRTLQNKKMVH 349
           + T+M  NRMF L +    Q  +CL T  SS   + LWH+R+GHL +K L  L NK+MV 
Sbjct: 110 LHTNMKGNRMFYLTASMTSQPLRCLQTEDSSDRETQLWHKRFGHLHFKALNILANKQMVI 169

Query: 350 GLPNFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTL 529
            LP       LCT C++GK HR+ IPK+SS RAS  L L+H D+CGPI+P S++NKRY L
Sbjct: 170 SLPQMKLPQTLCTTCLVGKQHRDTIPKQSSSRASAKLQLIHVDVCGPISPASHNNKRYIL 229

Query: 530 CFIDDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEF 697
            FIDDYSRK+W+Y+L EKSET   FK FK  VE E    I CL+TD GGEFTS EF
Sbjct: 230 NFIDDYSRKTWVYFLHEKSETFTAFKSFKACVEKEANTHITCLKTDHGGEFTSKEF 285


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 930

 Score =  288 bits (736), Expect = 8e-88
 Identities = 139/234 (59%), Positives = 173/234 (73%), Gaps = 2/234 (0%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG ++L +NGV  + +  FYVP+LKNNLL +GQLQE+GL+IL + G CKIYHPDKGLI+
Sbjct: 315  GKGNIRLDVNGVISIISGGFYVPELKNNLLGLGQLQEKGLSILFQQGKCKIYHPDKGLIM 374

Query: 185  QTDMSANRMFVL--FSQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLP 358
            Q++MS+NRMF+L   S      C  T +++++ LWH R+GHLS+KGL+TLQ K MV GL 
Sbjct: 375  QSNMSSNRMFILHAISLPVAPTCFNTVTEDVAQLWHCRFGHLSFKGLQTLQQKGMVEGLA 434

Query: 359  NFPKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFI 538
                  +LC D +IGK HR+  P KSSWRASQ+L LVHADICGPI P+SNS KRY L FI
Sbjct: 435  MLKPPSKLCKDYLIGKQHRDSFPMKSSWRASQILQLVHADICGPIKPVSNSKKRYLLTFI 494

Query: 539  DDYSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            DD+SRK+W+Y+L EKSE    FK FK  VE  T + +K LRTD GGEFTS EFN
Sbjct: 495  DDFSRKTWVYFLAEKSEAFTVFKSFKLHVEKATNMSLKGLRTDLGGEFTSREFN 548


>gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]
          Length = 1172

 Score =  290 bits (742), Expect = 2e-87
 Identities = 134/232 (57%), Positives = 177/232 (76%)
 Frame = +2

Query: 5    GKGKVKLLINGVTLVATDVFYVPDLKNNLLSIGQLQERGLAILIKGGACKIYHPDKGLII 184
            GKG VKL +NG T + TDV+Y+P+LKNNLLSIGQLQ + L I+ K   CK+YH DKG+I+
Sbjct: 329  GKGNVKLQLNGFTQIITDVYYIPELKNNLLSIGQLQLKDLTIVFKRNWCKVYHQDKGMIM 388

Query: 185  QTDMSANRMFVLFSQQQQNKCLLTSSQNMSHLWHQRYGHLSYKGLRTLQNKKMVHGLPNF 364
             + M++N+++ +F++ +   C  T S+++S+LWH RYGHL++KGL+TLQ K MV  LP  
Sbjct: 389  SSQMASNKLYPIFAEAKV-ACFQTKSEDISYLWHCRYGHLNFKGLQTLQQKNMVKDLPKI 447

Query: 365  PKSDELCTDCIIGKHHRNPIPKKSSWRASQVLDLVHADICGPITPISNSNKRYTLCFIDD 544
             +SD +CT+C++GK HR  IPK S+ ++S+ L+LVH+DICGPITP SNS+ RY L FIDD
Sbjct: 448  EESDHMCTNCLVGKQHRESIPKTSNLKSSKRLELVHSDICGPITPASNSDNRYFLTFIDD 507

Query: 545  YSRKSWIYYLMEKSETLNHFKCFKKMVENETGLPIKCLRTDRGGEFTSSEFN 700
            YSRK+W Y+L  KS  L +FK FK MVE ETG  I CLRTDRGGEF S+EFN
Sbjct: 508  YSRKTWAYFLKNKSSALEYFKKFKNMVEKETGESICCLRTDRGGEFNSNEFN 559