BLASTX nr result
ID: Rehmannia30_contig00029317
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00029317
(797 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense] 171 2e-44
gb|PNX96793.1| ribonuclease H, partial [Trifolium pratense] 164 7e-44
gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium prat... 165 1e-43
gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense] 167 2e-43
gb|PNY07715.1| ribonuclease H [Trifolium pratense] 167 3e-43
gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense] 166 7e-43
gb|PNX98065.1| ribonuclease H [Trifolium pratense] 166 8e-43
gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense] 166 8e-43
gb|PNX73375.1| ribonuclease H, partial [Trifolium pratense] 165 1e-42
gb|PRQ55763.1| putative RNA-directed DNA polymerase [Rosa chinen... 161 3e-41
gb|PRQ25708.1| putative ribonuclease H-like domain, reverse tran... 155 3e-41
dbj|GAU28666.1| hypothetical protein TSUD_159480 [Trifolium subt... 152 2e-38
gb|PNY03092.1| ribonuclease H [Trifolium pratense] 152 3e-38
gb|OMO52105.1| reverse transcriptase [Corchorus capsularis] 152 6e-38
gb|PNX85350.1| hypothetical protein L195_g041418 [Trifolium prat... 143 2e-37
dbj|GAU41445.1| hypothetical protein TSUD_98410 [Trifolium subte... 142 1e-36
gb|PNX92808.1| ribonuclease H [Trifolium pratense] 147 2e-36
dbj|GAU19906.1| hypothetical protein TSUD_95110 [Trifolium subte... 141 6e-36
dbj|GAU51007.1| hypothetical protein TSUD_411560 [Trifolium subt... 146 6e-36
dbj|GAU39350.1| hypothetical protein TSUD_56760 [Trifolium subte... 145 7e-36
>gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]
Length = 1188
Score = 171 bits (432), Expect = 2e-44
Identities = 94/281 (33%), Positives = 145/281 (51%), Gaps = 22/281 (7%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXX 181
+++ ++F PYEA+MIL IP+ +PD L W+ T+DG Y VKSGY AI E+
Sbjct: 797 DIINQVFLPYEAQMILNIPIIDKTQPDMLTWDCTQDGQYSVKSGYH---AIMEWGNLPNA 853
Query: 182 XXGANKK-FWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIET 358
N + W +W LKVPPK +WR +P K +L K+G+ D C RC ++ET
Sbjct: 854 SPSNNSQHIWNVLWKLKVPPKHSHLLWRVLHNALPVKNNLFKRGVRCDPLCPRCSNSMET 913
Query: 359 MEHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWY 535
+ H DC W K W A L L ++Q T +DW+ +++ N +++ +++ +WY
Sbjct: 914 IHHVFLDCEWAKQTWFASALTLNLGQNQLTDFYDWINYMINNTNKECIEKITAIMYGIWY 973
Query: 536 ARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPDTKQPPR--------SATWRKPEI 691
ARN +Q K L Q + A+ +L+E++T G+ Q P+ +W P
Sbjct: 974 ARNVLVFQGKNLPPQEISSTALNQLQEYQT--HGLEQHIQDPQVRRNGCSNDISWSPPPR 1031
Query: 692 EWIKINTDAS------------IRQGSGTGIGVALRDHNGN 778
+KIN DA +R+ G+ +GVA R HNG+
Sbjct: 1032 GTLKINVDAHLSSDGHWSTGLVLRRSDGSTVGVATRTHNGS 1072
>gb|PNX96793.1| ribonuclease H, partial [Trifolium pratense]
Length = 463
Score = 164 bits (414), Expect = 7e-44
Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 25/282 (8%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXXX 184
++ ++F+ Y+A+MIL IP+ +PD L W+ TKDGIY VKSGY AI ++
Sbjct: 73 IINQVFTSYDAQMILQIPIIDKTQPDTLTWDDTKDGIYSVKSGYH---AIIDWDSNSNTN 129
Query: 185 XGANK----KFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENI 352
A+ + W+ +W KVPPK +WR IP K +L KKG+ D C RC ++
Sbjct: 130 NAASSNRPMEIWKTLWKFKVPPKYSHLLWRILNNAIPVKGNLFKKGVKCDPLCPRCLNHV 189
Query: 353 ETMEHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIV 529
E+++H +C W K W A PL L + +Q T +DW ++ N D+D +++ +
Sbjct: 190 ESIQHVFLECEWAKKVWFASPLTLNLNLNQLTDFYDWFTFVTNNTDKDCMEKILAIIYEI 249
Query: 530 WYARNTKTYQNKELEHQWCFNFAIRRLEEHRT--------SIEGIPDTKQPPRSATWRKP 685
W RN +Q K L Q + A ++L E+++ S P T + +W P
Sbjct: 250 WNVRNLLVFQEKNLPPQEISSNAFKKLHEYQSHGEVKTQKSQTSPPSTNSCSNNISWSPP 309
Query: 686 EIEWIKINTDAS------------IRQGSGTGIGVALRDHNG 775
+KIN DA +R+ G+ +G A R H G
Sbjct: 310 LRGTLKINVDAHLSSDGHWFAGMVLRRSDGSAVGAATRVHKG 351
>gb|PNX96408.1| hypothetical protein L195_g019614 [Trifolium pratense]
Length = 548
Score = 165 bits (417), Expect = 1e-43
Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 10/269 (3%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXX 181
+++ ++F PYEA+MIL IP+ +PD L W+ T+DG Y VKSGY AI E+
Sbjct: 255 DIINQVFLPYEAQMILNIPIIDKTQPDMLTWDCTQDGQYSVKSGYH---AIMEWGNLPNA 311
Query: 182 XXGANKK-FWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIET 358
N + W +W LKVPPK +WR +P K +L K+G+ D C RC ++ET
Sbjct: 312 SPSNNSQHIWNVLWKLKVPPKHSHLLWRVLHNALPVKNNLFKRGVRCDPLCPRCSNSMET 371
Query: 359 MEHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWY 535
+ H DC W K W A L L ++Q T +DW+ +++ N +++ +++ +WY
Sbjct: 372 IHHVFLDCEWAKQTWFASALTLNLGQNQLTDFYDWINYMINNTNKECIEKITAIMYGIWY 431
Query: 536 ARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPDTKQPPR--------SATWRKPEI 691
ARN +Q K L Q + A+ +L+E++T G+ Q P+ +W P
Sbjct: 432 ARNVLVFQGKNLPPQEISSTALNQLQEYQT--HGLEQHIQDPQVRRNGCSNDISWSPPPR 489
Query: 692 EWIKINTDASIRQGSGTGIGVALRDHNGN 778
+KIN DA + G+ LR +G+
Sbjct: 490 GTLKINVDAHLSSDGHWSTGLVLRRSDGS 518
>gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]
Length = 1376
Score = 167 bits (424), Expect = 2e-43
Identities = 93/280 (33%), Positives = 145/280 (51%), Gaps = 22/280 (7%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXX 181
+++ +IF PYEA+MIL IP+ +PD L W++T+DGIY VKSGY + I E++
Sbjct: 982 DIINQIFQPYEAQMILKIPIMDKAQPDTLTWDNTQDGIYSVKSGYHS---IMEWSHTLNA 1038
Query: 182 XXGANKK-FWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIET 358
N + W+ IW L VPPK +WR + +P K +L K+G+ D C RC +ET
Sbjct: 1039 TTSNNSQDLWKAIWKLNVPPKHTHLLWRVLKNALPVKNNLFKRGVRCDPLCPRCTNCLET 1098
Query: 359 MEHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWY 535
H DC W K W A L L ++Q T ++DW+ +++ N +++ +++ +WY
Sbjct: 1099 TNHVFLDCEWTKQVWFASSLNLNLGQNQITDVYDWIRYMINNTNKECIEQITAIIYGIWY 1158
Query: 536 ARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPD--------TKQPPRSATWRKPEI 691
ARN +Q K L Q + A ++L+E++ + G TK +W P
Sbjct: 1159 ARNMLVFQEKLLPPQEISSIATKQLQEYQ--LHGFEQEIHEPQVRTKSCSNDISWSPPLR 1216
Query: 692 EWIKINTDAS------------IRQGSGTGIGVALRDHNG 775
+KIN DA +R+ G+ +GVA R H+G
Sbjct: 1217 GTLKINVDAHLSSDGHWSTGLVLRRVDGSTVGVATRTHDG 1256
>gb|PNY07715.1| ribonuclease H [Trifolium pratense]
Length = 1567
Score = 167 bits (423), Expect = 3e-43
Identities = 88/267 (32%), Positives = 137/267 (51%), Gaps = 10/267 (3%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTAL--AIKEYTXXXX 178
++ + F P EA IL IPLS+ M D + W TKDG Y VKSGY + A E +
Sbjct: 1157 VISKTFFPIEANQILQIPLSNTMTEDIISWQGTKDGNYTVKSGYNAQMEWANVESSQAQT 1216
Query: 179 XXXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIET 358
++ FW IWN+KVPPK +WR IP K +L KKG+ +D+ C RC + ET
Sbjct: 1217 SNNHKDEPFWNKIWNIKVPPKQIHLLWRIMHNAIPVKTNLIKKGILIDSLCPRCNKGPET 1276
Query: 359 MEHALRDCPWVKFFWAAGPLRLRTDKSQ-GTIFDWLGWIMENVDEDSHNIFACLLWIVWY 535
++H C W W PL ++T Q T +W+ +++ N ++S I + + + +W+
Sbjct: 1277 IDHLFLHCEWAHLVWFYSPLTIKTTNIQLHTFHEWIKYMLHNTTKESMQILSSITYSIWF 1336
Query: 536 ARNTKTYQNKELEHQWCFNFAIRRL---EEHRTSIEGIPDTKQPP----RSATWRKPEIE 694
ARN K +QNK++ + A++ + + H T P +PP + +W P
Sbjct: 1337 ARNKKVFQNKDIPVNETVDRALKNIHDFQHHLTEACFAPTNSKPPSVNRHNTSWNPPPRN 1396
Query: 695 WIKINTDASIRQGSGTGIGVALRDHNG 775
++K+N DA + G+G LR +G
Sbjct: 1397 FLKLNVDAHLSDDGHWGLGWVLRGVDG 1423
>gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]
Length = 916
Score = 166 bits (419), Expect = 7e-43
Identities = 93/278 (33%), Positives = 138/278 (49%), Gaps = 20/278 (7%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALA-IKEYTXXXXX 181
++ +IF+PYEA MI IP+ + D L W+ T+DG Y VKSGY + K
Sbjct: 619 IINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDNNNAT 678
Query: 182 XXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETM 361
++ + W+ +W L VPPK F+WRC IP K L KKG+ D C RC ++ET+
Sbjct: 679 SSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLFKKGIRCDPLCPRCLNHVETI 738
Query: 362 EHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWYA 538
+H +C W K W A PL L + +Q T +DW +++ N D++ + + +W
Sbjct: 739 QHVFLECDWAKKVWFASPLTLNLNSNQLTEFYDWFNYMIINTDKECMEKIVAITYEIWNT 798
Query: 539 RNTKTYQNKELEHQWCFNFAIRRL------EEHRTSIEGIPDTKQPPRSATWRKPEIEWI 700
RN +QNK+L Q A++RL EE RT I+ P K + +W P +
Sbjct: 799 RNLLVFQNKDLPPQEISANALKRLHEFKSFEEQRTPIQK-PSHKSCRNNTSWSPPLRGCL 857
Query: 701 KINTDAS------------IRQGSGTGIGVALRDHNGN 778
K N DA +R+ G+ +G A R H G+
Sbjct: 858 KANVDAHLSSDGRWLSGLVLRREDGSAVGSATRMHKGS 895
>gb|PNX98065.1| ribonuclease H [Trifolium pratense]
Length = 1011
Score = 166 bits (419), Expect = 8e-43
Identities = 93/278 (33%), Positives = 138/278 (49%), Gaps = 20/278 (7%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALA-IKEYTXXXXX 181
++ +IF+PYEA MI IP+ + D L W+ T+DG Y VKSGY + K
Sbjct: 619 IINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDNNNAT 678
Query: 182 XXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETM 361
++ + W+ +W L VPPK F+WRC IP K L KKG+ D C RC ++ET+
Sbjct: 679 SSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLFKKGIRCDPLCPRCLNHVETI 738
Query: 362 EHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWYA 538
+H +C W K W A PL L + +Q T +DW +++ N D++ + + +W
Sbjct: 739 QHVFLECDWAKKVWFASPLTLNLNSNQLTEFYDWFNYMIINTDKECMEKIVAITYEIWNT 798
Query: 539 RNTKTYQNKELEHQWCFNFAIRRL------EEHRTSIEGIPDTKQPPRSATWRKPEIEWI 700
RN +QNK+L Q A++RL EE RT I+ P K + +W P +
Sbjct: 799 RNLLVFQNKDLPPQEISANALKRLHEFKSFEEQRTPIQK-PSHKSCRNNTSWSPPLRGCL 857
Query: 701 KINTDAS------------IRQGSGTGIGVALRDHNGN 778
K N DA +R+ G+ +G A R H G+
Sbjct: 858 KANVDAHLSSDGRWLSGLVLRREDGSAVGSATRMHKGS 895
>gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]
Length = 1070
Score = 166 bits (419), Expect = 8e-43
Identities = 93/278 (33%), Positives = 138/278 (49%), Gaps = 20/278 (7%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALA-IKEYTXXXXX 181
++ +IF+PYEA MI IP+ + D L W+ T+DG Y VKSGY + K
Sbjct: 773 IINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSVKSGYQAIMEWAKNSDNNNAT 832
Query: 182 XXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETM 361
++ + W+ +W L VPPK F+WRC IP K L KKG+ D C RC ++ET+
Sbjct: 833 SSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLFKKGIRCDPLCPRCLNHVETI 892
Query: 362 EHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWYA 538
+H +C W K W A PL L + +Q T +DW +++ N D++ + + +W
Sbjct: 893 QHVFLECDWAKKVWFASPLTLNLNSNQLTEFYDWFNYMIINTDKECMEKIVAITYEIWNT 952
Query: 539 RNTKTYQNKELEHQWCFNFAIRRL------EEHRTSIEGIPDTKQPPRSATWRKPEIEWI 700
RN +QNK+L Q A++RL EE RT I+ P K + +W P +
Sbjct: 953 RNLLVFQNKDLPPQEISANALKRLHEFKSFEEQRTPIQK-PSHKSCRNNTSWSPPLRGCL 1011
Query: 701 KINTDAS------------IRQGSGTGIGVALRDHNGN 778
K N DA +R+ G+ +G A R H G+
Sbjct: 1012 KANVDAHLSSDGRWLSGLVLRREDGSAVGSATRMHKGS 1049
>gb|PNX73375.1| ribonuclease H, partial [Trifolium pratense]
Length = 925
Score = 165 bits (418), Expect = 1e-42
Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 25/283 (8%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXXX 184
++ ++F+PY A+MIL IP+ +PD L W+ TKDGIY VKSGY AI ++
Sbjct: 539 IINQVFTPYVAQMILQIPIIDKTQPDTLTWDGTKDGIYSVKSGYH---AIIDWNSNSNTN 595
Query: 185 XGANK----KFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENI 352
A+ + W+ +W LKVPPK +WR IP K +L KKG+ D C RC ++
Sbjct: 596 NAASSNSSMEIWKTLWKLKVPPKYSHLLWRILNNAIPVKGNLFKKGVKCDPLCPRCLNHM 655
Query: 353 ETMEHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIV 529
E+++H +C W K W A PL L + +Q T +DW ++ N D+D +++ +
Sbjct: 656 ESIQHVFLECEWAKKVWFASPLTLNLNLNQLTEFYDWFTFMTNNTDKDCMEKILAIIYEI 715
Query: 530 WYARNTKTYQNKELEHQWCFNFAIRRLEEHRT--SIEGIPDTKQPP------RSATWRKP 685
W ARN +Q K L Q A ++L E+++ I+ PP + +W P
Sbjct: 716 WNARNLLVFQEKNLPPQEISFNAFKKLHEYQSHGEIQTQNSQTSPPLNNSYSNNISWSPP 775
Query: 686 EIEWIKINTDAS------------IRQGSGTGIGVALRDHNGN 778
+ +KIN DA +R+ G+ +G A R H G+
Sbjct: 776 LRDTLKINVDAHLSSDGHWFAGMVLRRSDGSAVGAATRVHKGS 818
>gb|PRQ55763.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1228
Score = 161 bits (408), Expect = 3e-41
Identities = 89/263 (33%), Positives = 134/263 (50%), Gaps = 5/263 (1%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIK---EYTXXX 175
L++E+F P E +I +IPLS DR +W+H K G+Y VKSGY A + E
Sbjct: 827 LLQELFMPLEVNLIASIPLSLRRPVDRWVWHHDKKGMYDVKSGYHIARIVDGATERASCS 886
Query: 176 XXXXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIE 355
G N K+W+ +W+ ++PPK+++F+WR +GI+PTK +L KK D C C E
Sbjct: 887 TGPVGLNGKYWKLVWHARIPPKVRMFIWRLLKGILPTKHELCKKVALPDFECVFCHGAGE 946
Query: 356 TMEHALRDCPWVKFFWAAGPLRLR-TDKSQGTIFDWLGWIMENVDEDSHNIFACLLWIVW 532
H RDC ++ FWA G L L+ D ++ +W+ +++ + E N+F LW++W
Sbjct: 947 HGLHLFRDCSYIACFWALGELDLKVVDVMAASLEEWVKNVIDVITEHHRNLFFVYLWVIW 1006
Query: 533 YARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPDTKQPPRSATWRKPEIEWIKINT 712
RN + +A + L E++ + K A W P +KIN
Sbjct: 1007 SERNNLVWNGSVFNAYNAAQWASKFLGEYQ-QVHPTRQKKSGRTRAKWENPPTGRLKINI 1065
Query: 713 DASIRQGSGT-GIGVALRDHNGN 778
D S R SG GIGV +RD G+
Sbjct: 1066 DGSYRPESGDGGIGVVIRDDKGS 1088
>gb|PRQ25708.1| putative ribonuclease H-like domain, reverse transcriptase
zinc-binding domain-containing protein [Rosa chinensis]
Length = 372
Score = 155 bits (391), Expect = 3e-41
Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 7/265 (2%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTT---ALAIKEYTXX 172
EL++E+F+ +E I AIPLS DRL+W++ + GIY VKSGY A +++
Sbjct: 23 ELLEELFTSHEVDTIAAIPLSLRNSDDRLVWHYDRKGIYSVKSGYYIFHKAQTVRDCASG 82
Query: 173 XXXXXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDL-DAYCGRCGEN 349
GA +++W +W+ VPPK++LFMW+ +GI+PTK +L +K + L D C C
Sbjct: 83 SMGEGGAWRRYWHMLWSASVPPKVKLFMWKLIKGILPTKCNLVQKKVSLPDEKCTFCMAA 142
Query: 350 IETMEHALRDCPWVKFFWAAGPLRLR-TDKSQGTIFDWLGWIMENVDEDSHNIFACLLWI 526
E+ H +DCP + FW GPL L + T+ W +++ + D + F LW
Sbjct: 143 CESGTHLFKDCPTLLCFWLYGPLHLNPVEHPAKTLSSWTLDMLDILSVDQCDFFFMGLWA 202
Query: 527 VWYARNTKTYQNKELEHQWCFNFAIRRLEE-HRTSIEGIPDTKQPPRSATWRKPEIEWIK 703
VW+ RN ++N + +A+R L E + + + KQ P W+ +K
Sbjct: 203 VWFERNKMVWKNDAFQPLMLIEWAVRHLVEFQKYHPKAVRKKKQAPMK--WQCSPRGRLK 260
Query: 704 INTDASIRQGSGT-GIGVALRDHNG 775
IN D + R G GIGV +RD G
Sbjct: 261 INVDGAFRADVGCGGIGVVVRDDVG 285
>dbj|GAU28666.1| hypothetical protein TSUD_159480 [Trifolium subterraneum]
Length = 641
Score = 152 bits (383), Expect = 2e-38
Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 8/266 (3%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXX 181
+++K+ F P EA IL IPLS N+ D + W T DG Y VKSGY + +
Sbjct: 244 QIIKQNFIPIEANQILQIPLSYNLEEDVVCWQGTTDGSYTVKSGYNAQIEWESNNSAQAH 303
Query: 182 XXGA--NKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIE 355
+ W+ +WN++ PPK +WR ++P K +L KKG+ D+ C R ++ E
Sbjct: 304 TSNQLEDSPIWKNLWNIESPPKQLHLLWRILHNVVPVKSNLLKKGIVCDSICPRSNKSPE 363
Query: 356 TMEHALRDCPWVKFFWAAGPLRLRTDKSQGTIF-DWLGWIMENVDEDSHNIFACLLWIVW 532
T++H C W + W P+ + T + Q F DWL +++ N ++ I + + + +W
Sbjct: 364 TIDHTFISCDWARMVWFCSPITIMTTQIQPLTFSDWLRYMLTNSTKECMQIISTITYSIW 423
Query: 533 YARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPDTKQPPRS-----ATWRKPEIEW 697
RN K + NK+ A++ L E+ + + +PP S +W P +
Sbjct: 424 LGRNNKVFHNKDTPASEAVERAMKTLSEYHHLVADRISSSKPPNSIVRNNISWSPPPSNF 483
Query: 698 IKINTDASIRQGSGTGIGVALRDHNG 775
+K+N DA + G G+ +R +G
Sbjct: 484 LKLNVDAHLTSDGRWGFGMLVRRDDG 509
>gb|PNY03092.1| ribonuclease H [Trifolium pratense]
Length = 970
Score = 152 bits (385), Expect = 3e-38
Identities = 87/266 (32%), Positives = 129/266 (48%), Gaps = 8/266 (3%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXXX 184
++ ++F P EA+ IL IP++ +PD LIW T DG Y VKSGY AI E++
Sbjct: 580 IINQLFLPIEAQKILQIPITGTSQPDALIWAGTIDGHYTVKSGYQ---AITEWSESTQAS 636
Query: 185 XGANKK-FWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETM 361
AN W +W L +PPK +WR IP K +L KKG+ D C RC ++ET+
Sbjct: 637 TSANNDDIWPMLWKLNIPPKHSHLLWRALNEAIPVKGNLFKKGVKCDPLCPRCFNHVETI 696
Query: 362 EHALRDCPWVKFFWAAGPLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWYA 538
HA DC W K W + L + + Q T + DW+ + + D+ S + L+ +WYA
Sbjct: 697 HHAFLDCVWAKQMWFSSNLTINLNHCQHTNLHDWVMHMFKQTDQASRELITSNLYGIWYA 756
Query: 539 RNTKTYQNKELEHQWCFNFAIRRLEEH------RTSIEGIPDTKQPPRSATWRKPEIEWI 700
RN +Q K L + A+ +L+E+ + + T + W P +
Sbjct: 757 RNLLVFQGKSLPPHEVSSIALAQLQEYQKHCIKKNFVNQTRATGNSSNNNCWSPPPRGTL 816
Query: 701 KINTDASIRQGSGTGIGVALRDHNGN 778
KIN DA + G+ LR +GN
Sbjct: 817 KINVDAHLGGDGHWFSGIILRGCDGN 842
>gb|OMO52105.1| reverse transcriptase [Corchorus capsularis]
Length = 1565
Score = 152 bits (383), Expect = 6e-38
Identities = 95/274 (34%), Positives = 142/274 (51%), Gaps = 16/274 (5%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYT--TALAIKEYTXXXX 178
L++ +F+ E + IP+ S PDRLIW+ T+DG Y VKS Y T+ AI
Sbjct: 1178 LLRMVFNQTEVNAVKKIPIGSESTPDRLIWHFTRDGNYSVKSRYRLLTSEAISFGNNGQS 1237
Query: 179 XXXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIET 358
+ WR +WNLKV PK++ F+WR R I+PTK +L K+ L + C RCG +E+
Sbjct: 1238 SSSMQQSRTWRNLWNLKVAPKVKNFLWRSCRNIVPTKENLVKRHCSLFSQCDRCGAEVES 1297
Query: 359 MEHALRDCPWVKFFWAAGPLRLRTDKSQGTIFDWLGWIMEN----VDEDSHNI---FACL 517
+EH L CP+ + W A + +S+G + +L W E+ V S N+ L
Sbjct: 1298 LEHILFFCPFAQAVWRASHFSY-SPRSEGFV-SFLKWWEESANTIVSFGSLNVVELIRYL 1355
Query: 518 LWIVWYARNTKTYQNKELEHQWCFNFAIRRLEEHRTS------IEGIPDTKQPPRSATWR 679
W VW ARN+ ++ +E +N A+ E+ S I G+ T+Q W+
Sbjct: 1356 CWNVWKARNSFVFEGREGNPIEVWNHAVAEFVEYNESLLNANRIHGMGPTQQ-----VWQ 1410
Query: 680 KPEIEWIKINTDASIRQGSG-TGIGVALRDHNGN 778
P+ ++IK+N DA+ SG GI V RDH+G+
Sbjct: 1411 PPQRDFIKLNCDAAFDMASGDAGIAVVCRDHDGS 1444
>gb|PNX85350.1| hypothetical protein L195_g041418 [Trifolium pratense]
Length = 307
Score = 143 bits (360), Expect = 2e-37
Identities = 88/261 (33%), Positives = 127/261 (48%), Gaps = 21/261 (8%)
Frame = +2
Query: 56 PLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXXXXGAN-KKFWRWIWNLKV 232
P +PD L W+ T+DG Y VKSGY AIKE+ N +K W +W L V
Sbjct: 19 PTGIKTQPDILTWDGTQDGQYSVKSGYQ---AIKEWGNIQNTSSSNNYQKIWNILWKLNV 75
Query: 233 PPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETMEHALRDCPWVKFFWAAG 412
PPK +WR R +IP K +L K+G+ D C RC ET H C W K W A
Sbjct: 76 PPKHSHLLWRVIRNVIPVKDNLFKRGIRSDPLCPRCLNTTETTYHVFLGCEWSKRAWFAS 135
Query: 413 PLRLRTDKSQGT-IFDWLGWIMENVDEDSHNIFACLLWIVWYARNTKTYQNKELEHQWCF 589
PL L + +Q T +DWL ++ +++ +++ +WYARN +Q K L Q
Sbjct: 136 PLTLNLNTNQYTDFYDWLDSMINKTNQECIEQITTIIYGIWYARNMLVFQEKSLPPQDIS 195
Query: 590 NFAIRRLEEHR-----TSIEGIPDTKQPPRS--ATWRKPEIEWIKINTDAS--------- 721
+ A+++L E++ T ++ P+ K RS +W P +KIN DA
Sbjct: 196 SIALKQLHEYQLHSSETQLQN-PNGKSTGRSHNISWSPPLRGTLKINVDAHLSSDGHWST 254
Query: 722 ---IRQGSGTGIGVALRDHNG 775
+R+ G+ +G A R HNG
Sbjct: 255 GLVLRRSDGSAVGAATRVHNG 275
>dbj|GAU41445.1| hypothetical protein TSUD_98410 [Trifolium subterraneum]
Length = 329
Score = 142 bits (357), Expect = 1e-36
Identities = 80/249 (32%), Positives = 117/249 (46%), Gaps = 9/249 (3%)
Frame = +2
Query: 5 LVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXXX 184
L+ ++F P EA+MI IP+ + D L W+ T DG Y VKSGY + E T
Sbjct: 73 LINQLFIPIEAKMICQIPIIDKTQHDALTWDGTLDGNYSVKSGYQAIMNWVESTTTNTTS 132
Query: 185 XGA-NKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETM 361
A + W+ +W L VPPK F+WR +P K +L KKG+ D C RC ++ET
Sbjct: 133 SSAMSNNIWQILWKLNVPPKHSHFIWRLLNEALPVKGNLFKKGIRCDPLCPRCSNHVETS 192
Query: 362 EHALRDCPWVKFFWAAGPLRLRTDKSQ-GTIFDWLGWIMENVDEDSHNIFACLLWIVWYA 538
H DC W K W A L + + + DW+ + D+ S + A L+ +WYA
Sbjct: 193 HHVFLDCVWAKQVWFASSLTINLNGCHFENLNDWVLHMFNQTDQASKELIAATLYGIWYA 252
Query: 539 RNTKTYQNKELEHQWCFNFAIRRLEEHRT-------SIEGIPDTKQPPRSATWRKPEIEW 697
RN +Q K L + A +L+E ++ +I+ T + W P
Sbjct: 253 RNLLVFQEKNLPPNDVSHIAFAQLQEFQSHNIKTQNAIKRTLSTGSSSNNTRWNPPPRGI 312
Query: 698 IKINTDASI 724
+KIN DA +
Sbjct: 313 LKINVDAHL 321
>gb|PNX92808.1| ribonuclease H [Trifolium pratense]
Length = 930
Score = 147 bits (372), Expect = 2e-36
Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 10/269 (3%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEY-TXXXX 178
+L+ + F +EA I IP+ RPD W +TKDGIY VKSGY KE
Sbjct: 535 QLIFDTFMQFEAEQITQIPIVHLSRPDEFSWPYTKDGIYTVKSGYQAIQDWKEDPNKPST 594
Query: 179 XXXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIET 358
N W+ +W+LK+PPK +WR + +P + +L K+G++ C RC ENIE
Sbjct: 595 SYKPKNNSVWQKLWHLKIPPKYTHLIWRILQDALPVQSNLRKRGVNCYPLCPRCKENIED 654
Query: 359 MEHALRDCPWVKFFWAAGPLRLRTDKSQGTIFDWLGWIMENVDED---SHNIFACLLWIV 529
+ H C W K W A PL L+ D+++ F + WI +N+ +D + N+ + + +
Sbjct: 655 LNHVFSGCWWAKQVWFASPLTLKFDQNE---FSFKNWIEDNIRKDQSQNMNLIGAICYHI 711
Query: 530 WYARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPD------TKQPPRSATWRKPEI 691
W ARN T+QNK + + A L E+ ++ I + + + W P
Sbjct: 712 WRARNLLTFQNKNVPVLDVIHRAQECLFEYHRQVKPISEQVNRNTRARSNNDSDWIPPPK 771
Query: 692 EWIKINTDASIRQGSGTGIGVALRDHNGN 778
+ +K+N DA + G+G LR +G+
Sbjct: 772 DTLKLNVDAHLMGDGHWGLGWILRKEDGS 800
>dbj|GAU19906.1| hypothetical protein TSUD_95110 [Trifolium subterraneum]
Length = 395
Score = 141 bits (356), Expect = 6e-36
Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 16/274 (5%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXX 181
+++ ++F P+E +I PL D+L+W H+K+GIY VKSGY K
Sbjct: 12 DIINQLFLPFERDLIKQTPLIPETLEDQLMWPHSKEGIYTVKSGYNLIKFWKNAESPSST 71
Query: 182 XXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENIETM 361
A K W+ +W L P+ ++ +WR +P + L+K+G+ C R + ET+
Sbjct: 72 HTDAYNKVWKKLWALPTIPRHKILLWRIIHQALPVRSALSKRGIQCLIQCPRYLQKEETI 131
Query: 362 EHALRDCPWVKFFWAAGPLRLRTDKSQGTIFDWLGWIMENVDEDSHNIFACLLWIVWYAR 541
H +CP W L +R D+ QG DW+ + ++E+ + A + + +W+AR
Sbjct: 132 NHVFMNCPHATRIWFGSKLGVRFDQRQGNFSDWIVHAINTLNEEDISYVAAITYSIWFAR 191
Query: 542 NTKTYQNKELEHQWCFNFAIRRLEEHR--TSIE---------GIPDTKQPPRSAT----- 673
N K +++K E W N A L+E++ +IE +P+ + T
Sbjct: 192 NLKVFEDKNCEDSWVINKAWVSLKEYQMANTIEQTQNQYQQAELPNPNHNQHTHTTNNRR 251
Query: 674 WRKPEIEWIKINTDASIRQGSGTGIGVALRDHNG 775
W +P IKIN DA++ + G+G RD G
Sbjct: 252 WTRPSNGIIKINCDANLAREGRWGLGTVCRDSKG 285
>dbj|GAU51007.1| hypothetical protein TSUD_411560 [Trifolium subterraneum]
Length = 1556
Score = 146 bits (368), Expect = 6e-36
Identities = 80/265 (30%), Positives = 130/265 (49%), Gaps = 11/265 (4%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALA---IKEYTXX 172
++++E F P EA IL IPL+++ D + W T DG Y VKSGY + KE
Sbjct: 1162 QIIRENFFPMEANKILDIPLTNSTEEDEISWRGTNDGNYSVKSGYNAMIEWDQAKENPTQ 1221
Query: 173 XXXXXGANKKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGENI 352
A+ W IW L+ PPK +WR IP K +L KG+ D C RC ++
Sbjct: 1222 QSNTHMADSN-WAKIWKLRNPPKQIHLLWRVLHNAIPVKANLIAKGILCDTLCPRCNKSP 1280
Query: 353 ETMEHALRDCPWVKFFWAAGPLRLRTDKSQGTIF-DWLGWIMENVDEDSHNIFACLLWIV 529
ET +H +C W + W + PL + KS+ F DW +++ N ++ + + + +
Sbjct: 1281 ETTDHTFLNCDWAQKTWFSSPLSINLYKSRYQSFSDWFYYMLNNTPKECIEMITTITYSI 1340
Query: 530 WYARNTKTYQNKELEHQWCFNFAIRRLEEHRTSIEGIPD-------TKQPPRSATWRKPE 688
WYARN K Y K+++ + +I+ L++++ + + D + +W P
Sbjct: 1341 WYARNQKIYHQKDIQIETNLMRSIQLLQDYQHNCNSLLDPPSVSSHLSSSSNNISWSPPS 1400
Query: 689 IEWIKINTDASIRQGSGTGIGVALR 763
++K+N DA +R GIG+ LR
Sbjct: 1401 ENYLKLNVDAHLRDAGHWGIGMILR 1425
>dbj|GAU39350.1| hypothetical protein TSUD_56760 [Trifolium subterraneum]
Length = 913
Score = 145 bits (367), Expect = 7e-36
Identities = 83/270 (30%), Positives = 130/270 (48%), Gaps = 12/270 (4%)
Frame = +2
Query: 2 ELVKEIFSPYEARMILAIPLSSNMRPDRLIWNHTKDGIYKVKSGYTTALAIKEYTXXXXX 181
+L+ + F PYEA I IPLS D + W TKDG Y VKSGY AI ++
Sbjct: 520 QLINKTFLPYEANQIRHIPLSPYSTEDTICWQGTKDGNYTVKSGYN---AIIDWESNNNE 576
Query: 182 XXGAN-----KKFWRWIWNLKVPPKIQLFMWRCGRGIIPTKFDLAKKGMDLDAYCGRCGE 346
+N W W L+ PPK +WR +P K +L +G+ D+ C RC +
Sbjct: 577 QGSSNLYSRHDTNWSKFWKLQNPPKQLHLIWRTLHNALPVKANLITRGIICDSLCPRCNQ 636
Query: 347 NIETMEHALRDCPWVKFFWAAGPLRLRTDKSQGTIF-DWLGWIMENVDEDSHNIFACLLW 523
+ ET++H +C W + W + PL L+T+ + F DW + + + D+D +++
Sbjct: 637 SPETVDHVFLNCEWAQKVWFSSPLTLKTNNNHTHNFNDWYNYFLNHTDKDYIQTINSIIY 696
Query: 524 IVWYARNTKTYQNKELEHQWCFNFAIRRLEEHRT--SIEGIPDTKQPP----RSATWRKP 685
+W ARN K + K+ AI+ L E+ T SI+ I P + +W P
Sbjct: 697 SIWLARNNKIHNQKDTPVHMTVEKAIQILHEYHTNCSIDNIVSADPIPPNTRHNKSWSPP 756
Query: 686 EIEWIKINTDASIRQGSGTGIGVALRDHNG 775
++K+N DA ++ G+G+ LR +G
Sbjct: 757 RRNFLKLNVDAHLKDDGHWGLGLVLRREDG 786