BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00024641
         (1047 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011097708.1| probable RNA polymerase II transcription fac...    64   2e-07
gb|PIN09333.1| RNA polymerase II transcription initiation/nucleo...    59   8e-06

>ref|XP_011097708.1| probable RNA polymerase II transcription factor B subunit 1-1 isoform
            X1 [Sesamum indicum]
          Length = 600

 Score = 63.9 bits (154), Expect = 2e-07
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = -1

Query: 1035 FEGAAIPDNEVCVNL*TTNTIAFHAEAGRAMHEVSVAPLSNEQLTRVETERRIKLLLENS 856
            FE  +  D +VC      N IAFHAEAGR + + S  P++NEQL+R ETERRIKLL ENS
Sbjct: 80   FEFDSFADRDVCREF-VANAIAFHAEAGRVVPDKSAPPVNNEQLSREETERRIKLLQENS 138


>gb|PIN09333.1| RNA polymerase II transcription initiation/nucleotide excision repair
            factor TFIIH, subunit TFB1 [Handroanthus impetiginosus]
          Length = 526

 Score = 58.9 bits (141), Expect = 8e-06
 Identities = 31/60 (51%), Positives = 41/60 (68%)
 Frame = -1

Query: 1035 FEGAAIPDNEVCVNL*TTNTIAFHAEAGRAMHEVSVAPLSNEQLTRVETERRIKLLLENS 856
            FE  +  D +VC     T  I++H E+GR + E S AP+++EQL+R ETERRIKLL ENS
Sbjct: 79   FEFDSFADRDVCREFVAT-AISYHTESGRGVPEKSAAPVNDEQLSRAETERRIKLLQENS 137