BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00016023
         (2672 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...   775   0.0  
gb|KZV53534.1| hypothetical protein F511_42283 [Dorcoceras hygro...   764   0.0  
gb|PNX96222.1| retrovirus-related Pol polyprotein from transposo...   775   0.0  
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   762   0.0  
gb|PNX92904.1| retrovirus-related Pol polyprotein from transposo...   776   0.0  
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo...   772   0.0  
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo...   774   0.0  
gb|PNX93476.1| retrovirus-related Pol polyprotein from transposo...   773   0.0  
gb|PNX92993.1| retrovirus-related Pol polyprotein from transposo...   772   0.0  
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo...   756   0.0  
gb|KZV25004.1| Cysteine-rich RLK (receptor-like protein kinase) ...   764   0.0  
gb|PNY12308.1| retrovirus-related Pol polyprotein from transposo...   765   0.0  
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo...   754   0.0  
gb|PNY12226.1| retrovirus-related Pol polyprotein from transposo...   761   0.0  
gb|PNX95321.1| retroelement pol polyprotein-like [Trifolium prat...   759   0.0  
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   755   0.0  
gb|PNX93622.1| retrovirus-related Pol polyprotein from transposo...   756   0.0  
gb|KYP64168.1| Retrovirus-related Pol polyprotein from transposo...   738   0.0  
gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifo...   734   0.0  
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo...   737   0.0  

>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1316

 Score =  775 bits (2001), Expect = 0.0
 Identities = 408/878 (46%), Positives = 551/878 (62%), Gaps = 7/878 (0%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ +L FPLS  +  Q F+L+H+DIWGP    S+    Y LTIVDD TR TW++LM++KS
Sbjct: 449  KQKKLPFPLSHSYASQPFDLLHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQNKS 508

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E   HI  FI  V+ QF + VK +R+DNG EF   Q    F+ +GI+HQ +C  TPQQNG
Sbjct: 509  ETRQHIINFINQVETQFDKHVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNG 565

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            +VERKH+H+L + R+L+FQ+ LP  FW + L+ A  ++N +P+  L   SPFE LY  P 
Sbjct: 566  IVERKHQHLLNVTRSLLFQANLPSIFWCFALMHATFLINCIPTPFLHNISPFEKLYGHPC 625

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
                  VFGCLC++S +   R K +PRA  CIFLG+    KGY L+NL T  + +SR+V+
Sbjct: 626  DISILCVFGCLCYSSTITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVL 685

Query: 723  FHESNFP-FHNGNSSAAEIPLPIQA--IEFEEDAGEEVTHVSQKQQTDVQSPITDSEITD 893
            FHE +FP F   +S +   P+PI    +++       +   S    +D  S         
Sbjct: 686  FHEDHFPSFTKPHSPSFSSPVPIHYNYVDYPTFPSSSIVESSDPPTSDQHSS------PP 739

Query: 894  RLGRGHRVRHAPSWLQDY----VTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSS 1061
             L R  R R  P++LQD+     + +  H ST ++   L    +YDL          +S 
Sbjct: 740  PLRRSTRPRRPPTYLQDFHGAFTSTSTAHSSTGIR-HPLHSFLSYDL----------LSP 788

Query: 1062 TYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSK 1241
            ++  ++  IS S +EP ++ EA+K  SW +AM++E+ ALE N TW LT+LP  K AIG +
Sbjct: 789  SFHHYVFSIS-SVTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCR 847

Query: 1242 WVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDL 1421
            WVYK+K  +DG+IDRYKARLVAKGY Q+EG+DF ++FSPVAKL TVR+L++LA    W L
Sbjct: 848  WVYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHL 907

Query: 1422 HHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLL 1601
              +D+NNAFLHG L+EEVYM  P G   +  G+VC L+RSLYGLKQASRQW    S  L+
Sbjct: 908  KQLDVNNAFLHGDLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLI 967

Query: 1602 GFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGH 1781
              G+V S  D+ LF+K       A++IYVDD+++ G+    I +L + LH  F IKDLG+
Sbjct: 968  QHGYVPSPSDHSLFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGN 1027

Query: 1782 AKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADI 1961
             KYFLGLE+ R++ G HLCQRKYI+DLL DTG++  KPVSTP     +++A + TP  D 
Sbjct: 1028 LKYFLGLEVARNHTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDT 1087

Query: 1962 GKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYP 2141
              +RRLVGRL+YL  +RPDI+Y VQQLSQFV  PT AH      +L+YLKGT   G+F  
Sbjct: 1088 AAYRRLVGRLIYLTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLS 1147

Query: 2142 VGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMA 2321
            V    Q  A+ D+DW  C  TR+SITG+ V+ G+SL               +EAEYR++A
Sbjct: 1148 VNSSVQLRAFSDSDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALA 1207

Query: 2322 ATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQF 2501
             T CEL+WL  L  D  + P  P  L+CDN++AL I +NPVFHERTKH++IDCHIVR++ 
Sbjct: 1208 TTTCELQWLSYLLKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKV 1267

Query: 2502 KAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
              G +    +S+  Q AD+ TK L    FR+   KLGM
Sbjct: 1268 STGLLKLLPVSSSQQLADILTKPLSPFVFRSHCSKLGM 1305


>gb|KZV53534.1| hypothetical protein F511_42283 [Dorcoceras hygrometricum]
          Length = 1012

 Score =  764 bits (1972), Expect = 0.0
 Identities = 399/875 (45%), Positives = 545/875 (62%), Gaps = 4/875 (0%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ RL F         +FEL+HID+WGP+ + SV    + LTIVDD TR TW+Y+++ KS
Sbjct: 154  KQKRLPFESHNKTAAHSFELLHIDVWGPFSKYSVDGYRFFLTIVDDHTRFTWVYMLRSKS 213

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+      F  +V  QF   +K VRSDN  +       NLF+E GI+H  SC   PQQN 
Sbjct: 214  EVSSIFPMFCRMVDTQFGAKIKSVRSDNAPDL---GFINLFSELGIVHTYSCVERPQQNS 270

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            +VERKH+HIL +ARALMFQS +P  +W   ++ +++++N  PS++L  K+PFELL+ +PP
Sbjct: 271  IVERKHQHILNVARALMFQSSVPIDYWSDCIVTSMYLINRTPSSILHHKTPFELLHGKPP 330

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             Y   K+FGCLC+AS L   R KF PRA  C+FLGY  G +GY+L NLDT E+ IS DV+
Sbjct: 331  AYSHLKIFGCLCYASTLMSSRHKFSPRAIKCVFLGYPPGYRGYKLLNLDTNEILISCDVI 390

Query: 723  FHESNFPFHNGNSSAAEIPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEITDRLG 902
            FHE  FPF N  +S ++      +  F ++      H        +  PI+    + +  
Sbjct: 391  FHEHEFPFQNTYNSDSQ-----PSYIFSDNLLP--VHSQLNNSHTIPDPISSK--SKQQS 441

Query: 903  RGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLS 1082
            R  R+   P  LQ+Y  +   H S+          T++ L C   NYS  +S  +   ++
Sbjct: 442  RSQRILQPPHHLQNY--HCYMHSSSP------STSTSHPL-CNFVNYSK-LSPLHRNLVN 491

Query: 1083 HISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKR 1262
            +IS S  EPT++ +A     W++AM+ EL ALE N TW + SLP GK  +G +WVYK K 
Sbjct: 492  NIS-SIVEPTTFSQAVAIPEWKQAMSDELKALELNHTWSIVSLPPGKSVVGCRWVYKAKF 550

Query: 1263 NSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINN 1442
             +DG++ RYKARLVAKGY Q EG+D++E+FSPVAK+VTVR L+ALA  R W L  + ++N
Sbjct: 551  AADGSLQRYKARLVAKGYTQQEGLDYLETFSPVAKMVTVRTLLALAAARGWSLIQLHVHN 610

Query: 1443 AFLHGYLDEEVYMLPPEGYHKA----KKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFG 1610
            AFLHG LDEEVYM  P GY           VC L +SLYGLKQASRQW  +FS  LL  G
Sbjct: 611  AFLHGELDEEVYMSLPPGYSSEGGPLPPQSVCKLHKSLYGLKQASRQWFAKFSSTLLSVG 670

Query: 1611 FVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAKY 1790
            F QS  DN LF+K  D  +L L++YVDD++I  ++      LK++L+  F +KDLG  KY
Sbjct: 671  FSQSHADNSLFIKVRDNVFLVLLVYVDDIVIATNNEEAASELKSFLNNKFKLKDLGKLKY 730

Query: 1791 FLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGKF 1970
            FLG+E+ RS++G  +CQR Y M+ L + GLMGC+P STP      IT +      D   +
Sbjct: 731  FLGIEVARSSRGISICQRNYAMNFLTEAGLMGCRPRSTPMEANVKITQEDGEILPDPSSY 790

Query: 1971 RRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGD 2150
            RRL+GRLLYL ++RPD+++ V +LSQ+V  P   H + A+++L+Y+KGTI  GL+Y    
Sbjct: 791  RRLIGRLLYLTVTRPDLAFAVNKLSQYVSKPRLPHMEAALNILRYVKGTIGQGLYYGSNS 850

Query: 2151 CPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATV 2330
              +   + DADWG CL TR+S+TGYCVF G S+               AEAEYRSMAA  
Sbjct: 851  DLRLKFFSDADWGACLDTRRSVTGYCVFLGESMISWRAKKQHTVSRSSAEAEYRSMAAAT 910

Query: 2331 CELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKAG 2510
            CE+ W+ +L  DL +    P  L CD++AA+HI +NPVFHERTKH+DIDCH++R + + G
Sbjct: 911  CEILWIRSLLTDLGVKCDGPATLFCDSQAAIHIASNPVFHERTKHIDIDCHVIREKVQQG 970

Query: 2511 FISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
             +   H+S+  Q ADLFTKAL  + FR+ L K+G+
Sbjct: 971  IVKLMHVSSVQQLADLFTKALLTSRFRSLLSKMGI 1005


>gb|PNX96222.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1369

 Score =  775 bits (2002), Expect = 0.0
 Identities = 403/904 (44%), Positives = 553/904 (61%), Gaps = 33/904 (3%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQCRL FP S    E+ F LIH D+WG Y   +   + Y LTIVDD++RGTW+YL+K K+
Sbjct: 465  KQCRLPFPQSINKAEEPFSLIHSDLWGRYHTAAHDGSHYFLTIVDDYSRGTWVYLLKDKT 524

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            +    +  F  +V+ QF R VK  RSDNG EF ++  +    E+GI+H+ SC  TPQQNG
Sbjct: 525  QATGILMNFCKMVKTQFNRDVKTFRSDNGTEFTNSVFKAFLREKGIMHETSCVSTPQQNG 584

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKHRHIL +ARAL F + LP +FW   +LAA HI+N  P+   +  +P+E+L+ + P
Sbjct: 585  RVERKHRHILNVARALRFHANLPIRFWGECVLAATHIINRTPTMANKGITPYEMLFGKSP 644

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             YD  KVFGCLC+ +    QR KF PRA  C+FLGY  G KG+++YNL T+E  +SRDVV
Sbjct: 645  NYDHIKVFGCLCYVATTSKQRDKFGPRADRCVFLGYPQGQKGWKVYNLKTREFIVSRDVV 704

Query: 723  FHESNFPFHNGNSSAAEIP-------LPIQA---IEFEEDAGEEVTHVSQ----KQQTDV 860
            F+E+ FPF      A   P        P +    I  E +  EE    +Q    ++  +V
Sbjct: 705  FYENVFPFKIDEREAVTDPPRNLFHNTPPRIENEISSEGEMAEENDSAAQVNIMEESCEV 764

Query: 861  QSPITDSEITDRLGRGH------------RVRHAPSWLQD---YVTNTVHHGSTTL---K 986
              P T+        + H            R R  P++LQD   Y    V    + +    
Sbjct: 765  HVPQTEDNEEILNEKNHHQQTEAMIIMPPRDRKPPAYLQDFHCYAAGEVPPSKSLIFSPS 824

Query: 987  IGGLKKPTTYDL-DCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNK 1163
             G +   T +   DCF        S  +  FL+ IS    EPT+Y +A K   WR AMN+
Sbjct: 825  SGKVHSITNFMRNDCF--------SQRHQAFLAEISKH-EEPTTYSQAVKHVEWRNAMNQ 875

Query: 1164 ELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFM 1343
            EL ALEENETW+L   P GKK +G KWVYKIK  + G I++YKARLVAKGY Q+EG DF 
Sbjct: 876  ELKALEENETWELDFPPKGKKVVGCKWVYKIKYKATGEIEKYKARLVAKGYTQVEGEDFN 935

Query: 1344 ESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEV 1523
            E+F+PVAK+ TVR ++++A  + W+LH +D++NAFLHG LDEEVYM  PEGY   K G V
Sbjct: 936  ETFAPVAKMTTVRCMLSVAVAKDWELHQMDVSNAFLHGELDEEVYMKAPEGYALPKIGMV 995

Query: 1524 CLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLI 1703
            C L++SLYGL+QASR W  + S  LL +GF++S  D+ LF       +LA++IYVDD++I
Sbjct: 996  CRLKKSLYGLRQASRNWYSKLSNALLEYGFIESHADHSLFTYSHQSTFLAVLIYVDDLVI 1055

Query: 1704 TGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLM 1883
             G++ A     K YL   F +KDLG  KYFLGLEL R   G  +CQRKY +D+L + G++
Sbjct: 1056 AGNNTAACTKFKKYLSGCFHMKDLGPLKYFLGLELARGKSGLFICQRKYTLDILNECGML 1115

Query: 1884 GCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAP 2063
            GCKP S P  Q + +   +  P+A+  ++RRLVGRL+YL ++RP+I+Y V  LSQF+  P
Sbjct: 1116 GCKPSSFPMEQNHRLALASGEPYAEPSRYRRLVGRLIYLTITRPEITYAVHTLSQFMQCP 1175

Query: 2064 TEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGN 2243
             +AHWD A+H+L+YLK +   G+  P  +  +  AY D+DW +C LTR+SI+GY +  G 
Sbjct: 1176 QQAHWDAAMHVLRYLKSSPGQGIVLPRENELKLVAYSDSDWASCPLTRRSISGYLLKLGA 1235

Query: 2244 SLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAAL 2423
            +                +EAEYR+MA    E+ WL  L   LQ+  + P  L+CDN+AA+
Sbjct: 1236 APISWKTKKQSTVSRSSSEAEYRAMAHATSEILWLRRLLTCLQVDCNSPTTLYCDNQAAM 1295

Query: 2424 HITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLL 2603
            H+ ANPV+HERTKH+++DCH +R   + G I   ++ T  Q AD+FTK+LG T F++  +
Sbjct: 1296 HLAANPVYHERTKHIEVDCHFIREHIQEGTIVTDYVPTKQQQADIFTKSLGSTQFQSLSV 1355

Query: 2604 KLGM 2615
            KLG+
Sbjct: 1356 KLGV 1359


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  762 bits (1967), Expect = 0.0
 Identities = 395/890 (44%), Positives = 548/890 (61%), Gaps = 19/890 (2%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ RL   +S   +    EL+H DIWGPY  PSV    Y LT+VDDF+R TWI +MK KS
Sbjct: 127  KQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTLVDDFSRFTWIVMMKSKS 186

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E   H++ FI+ ++ QFQ  +K +R+DNG+EFL +   +LF  +GI+HQ SC  TPQQNG
Sbjct: 187  ETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMH---DLFLSKGIIHQGSCVETPQQNG 243

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            VVERKH+HIL  ARAL FQ+ LPK FW + +  AVH++N +PS LL  K+P++ L++ PP
Sbjct: 244  VVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPSPLLDNKTPYQALHQRPP 303

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
                 + FGCL +AS L   R KF+PRA   + LGY  G+KGY LY+L + E F+SR+V 
Sbjct: 304  ILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVF 363

Query: 723  FHESNFPFHNGNSSAAEIPLPI---------QAIEFEEDAGEEVTHVSQKQQTDVQSPIT 875
            FHE  FPFH  + ++   P P             + +       T  +         P++
Sbjct: 364  FHEFTFPFHTPSQTSLTQPSPTPITIQTPISSPYDLDNHVPPSPTSSTSIPPEQPHQPLS 423

Query: 876  DSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKP------TTYDLDCFPF 1037
             +    R     R+R  PS+L+DY  + +          G+  P       TYD  C P 
Sbjct: 424  PAPAPSR--HSTRMRQPPSYLKDYHCSLLAPTGRINSFSGISTPHSISSTLTYDF-CSP- 479

Query: 1038 NYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPA 1217
                    +Y  F   +S +  EP +Y +A+K   W  AM  ELAAL+ N+TW +  LP+
Sbjct: 480  --------SYKQFCLSVSTNF-EPHTYTQASKYDCWIMAMKTELAALDMNQTWSIVDLPS 530

Query: 1218 GKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVAL 1397
            GK+ IG KWVYKIK  SDG+I+RYKARLVAKGY Q EG+D+++++SPVAKL TVR+L+AL
Sbjct: 531  GKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTVRVLLAL 590

Query: 1398 ATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKG----EVCLLRRSLYGLKQAS 1565
               + W L  +D+NNAFLHG L EEVYM  P G           +VC L +S+YGLKQAS
Sbjct: 591  TAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLHKSIYGLKQAS 650

Query: 1566 RQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTY 1745
            RQW  + S  L+  G+  ST D+ LF+K     + AL++YVDD+++ G+    I  +K  
Sbjct: 651  RQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEIDFIKAQ 710

Query: 1746 LHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYN 1925
            LH+ F IKDLG+ +YFLGLE+ RSN+G  L QRKY +++L+D G +  KP STPF     
Sbjct: 711  LHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFNPSLK 770

Query: 1926 ITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKY 2105
            + +   +P+ D   +RRL+GRLLYL  +RPDISY VQQLSQFV  P + H+  A  +L+Y
Sbjct: 771  LHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAATRILRY 830

Query: 2106 LKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXX 2285
            LKG+   GLFY      + +A+ D+DW +C ++RKSITG+CVF G+SL            
Sbjct: 831  LKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRSKKQSTIS 890

Query: 2286 XXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKH 2465
               +EAEYR++A+  CEL+WL+ L  DL+ S + P  + CDNK+A+++  NP FHERTKH
Sbjct: 891  RSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPTFHERTKH 950

Query: 2466 LDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
            ++IDCH++R + ++  +    + +  Q AD FTK L  T+F +F+ KLG+
Sbjct: 951  IEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGL 1000


>gb|PNX92904.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1457

 Score =  776 bits (2003), Expect = 0.0
 Identities = 408/908 (44%), Positives = 547/908 (60%), Gaps = 29/908 (3%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ R  F  S    +  F LIH D+WGPY  P+     Y LTIVDDF+R  W+YL+  K 
Sbjct: 555  KQTRDVFQESNNKVDDCFSLIHCDLWGPYKVPASCGAFYFLTIVDDFSRAIWVYLLLEKK 614

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+   I  F A+ + QF++ VK VRSDNG EF     ++ F  +GILHQ SC  TPQQNG
Sbjct: 615  EVSQTIKNFCAMTERQFEKPVKIVRSDNGTEFTC--LKSYFEVKGILHQTSCVGTPQQNG 672

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKHRHIL +ARAL FQ+ LP +FW   +L A +++N  PS+LL+ KSP+E+L+K+ P
Sbjct: 673  RVERKHRHILNVARALRFQANLPIQFWGECVLTASYLINRTPSSLLRGKSPYEVLFKKKP 732

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             Y++ KVFGCLC+    G  + KF  R+  C+FLGY  G KG+R+Y+L T E F+SRDVV
Sbjct: 733  IYNQLKVFGCLCYVHHRGRDKDKFSERSKKCVFLGYPYGKKGWRVYDLKTGEYFVSRDVV 792

Query: 723  FHESNFPFHNGNSSAAEIPLPIQAIEF--------------------------EEDAGEE 824
            FHES FP+        +       +E+                            D  EE
Sbjct: 793  FHESTFPYVVDKDMVKDCEEEAHQVEYAWFDDAPDKDEVDERVLERGRLDSCENNDRNEE 852

Query: 825  VTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKK 1004
               V  ++  D  +  T+ E   +LG+G R+      L+D+VT T      +        
Sbjct: 853  CKTVVNEEVGD-DTNHTEQEHMQQLGKGKRISQPSVRLKDFVTYTARCSKDSPHTQSHSI 911

Query: 1005 PTTYDLDCFPF-NY--SPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAA 1175
              +     +P  NY  S   S  Y  FL+ +++   EPTS+  A KDA WREAM KE+ A
Sbjct: 912  SRSSGTTPYPITNYVTSAKFSPRYCAFLAAVTDE-DEPTSFSIAVKDARWREAMKKEIEA 970

Query: 1176 LEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFS 1355
            LE NETW L +LP GKKAIG KWVYKIK NSDGT++RYKARLV  G  QIEG+D+ E+F+
Sbjct: 971  LENNETWTLETLPPGKKAIGCKWVYKIKYNSDGTVERYKARLVILGNRQIEGLDYNETFA 1030

Query: 1356 PVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLR 1535
            PVAK+ TVR L+A+A  + W+LH +D++NAFLHG L EEVYM  P G+    K +VC LR
Sbjct: 1031 PVAKMATVRTLIAVAAAKNWELHQMDVHNAFLHGDLSEEVYMHLPPGFSTTHKSKVCRLR 1090

Query: 1536 RSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDS 1715
            +SLYGL+QA R W  + +  L  +GF QS  D  LF    +   L ++IYVDD++I G+ 
Sbjct: 1091 KSLYGLRQAPRCWFFKLATALKEYGFEQSKSDYSLFTYSSNKVQLNVLIYVDDLVIAGNV 1150

Query: 1716 AALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKP 1895
               +   K YL + F +KDLG  KYFLG+E+ R  QG  LCQRKY +D++ + GL+G KP
Sbjct: 1151 VKAVIEFKQYLSKCFHMKDLGELKYFLGIEVARGPQGIFLCQRKYALDIVSEAGLLGAKP 1210

Query: 1896 VSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAH 2075
               P  Q + +         +  ++RRLVGRL+YL ++RP++SY V  L+QF+  P EAH
Sbjct: 1211 ALFPMEQNHQLAMAQGEAMENPEQYRRLVGRLIYLTITRPELSYCVHVLAQFMQHPQEAH 1270

Query: 2076 WDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXX 2255
            W+ A+ +++YLKG    G+        Q  AYCD+DW +C LTR+S+TGY VF  +S   
Sbjct: 1271 WEAALRVVRYLKGKPGQGIVLHANTDLQLTAYCDSDWASCPLTRRSLTGYVVFLNSSPVS 1330

Query: 2256 XXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITA 2435
                         AEAEYRSMAA VCELKW+  L   L +S + P+ LHCD++AALHI  
Sbjct: 1331 WKTKKQHTVSRSSAEAEYRSMAAAVCELKWMKGLLASLGVSHTSPMQLHCDSQAALHIAT 1390

Query: 2436 NPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
            NPVFHERTKH+++DCH VR++ + G I+  ++ T  Q AD+ TKALG   F   + KLG+
Sbjct: 1391 NPVFHERTKHIEVDCHFVRDEIQCGNIATSYVRTTNQLADILTKALGRQQFEYLISKLGI 1450

Query: 2616 CSSTHIPT 2639
              + H PT
Sbjct: 1451 -QNLHAPT 1457


>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1353

 Score =  772 bits (1994), Expect = 0.0
 Identities = 408/908 (44%), Positives = 570/908 (62%), Gaps = 24/908 (2%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            K  RL FP S   +E  F+LIH+DIWGP    S+    Y LTIVDD +R TWI+ MK+K 
Sbjct: 462  KHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFFMKNKF 521

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E  L +  F++ VQ QFQ+++K +R+DNG+EFL    ++ +A+ GI+HQ SC  TPQQNG
Sbjct: 522  ETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEFL---LKDWYAKLGIVHQTSCVNTPQQNG 578

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            VVERKH+HIL +ARALMFQS + K FW Y +  AVH++N LP+  LQ  SP+ +LY E P
Sbjct: 579  VVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKP 638

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             +   KVFGCL FAS L   R K EPR+  C+FLGY +G KG+ +Y+L T+E FISRDV 
Sbjct: 639  DFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQ 698

Query: 723  FHESNFPFHNGNS---------SAAEIPLP------------IQAIEFEEDAGE-EVTHV 836
            F+E+ FP     S           A++PL             +   E E ++    +T+ 
Sbjct: 699  FYENIFPLQKDFSIQSTDGPVVPIAQMPLTSCDPIPSHTHDNLDETEHEHNSSTLPMTNS 758

Query: 837  SQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTY 1016
            S   Q +++  I +   T +     RV++ P +LQDY     H      K+        Y
Sbjct: 759  SNSDQPNIEINIPEIRRTSQ-----RVKNRPGYLQDY-----HCTLAASKVDQSSSTARY 808

Query: 1017 DLDCFPFNYSPHMSSTYAVFLSHISNSAS--EPTSYLEAAKDASWREAMNKELAALEENE 1190
             +     +Y P+ S + AV  S +S  +S  EP SY +A     W+EA+  EL AL++ +
Sbjct: 809  PIS----DYLPYTSYS-AVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQK 863

Query: 1191 TWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKL 1370
            TW LT LP  K+A+G +WV+K+K ++DG+++RYKARLVAKG+ QI G+D++++FSPV ++
Sbjct: 864  TWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRM 923

Query: 1371 VTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYG 1550
             T+R+ +A+A    W +H +DIN AFLHG L EEVYM PP G   +   +VC L++SLYG
Sbjct: 924  TTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYG 983

Query: 1551 LKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQ 1730
            LKQ SRQWN++ +E L  FGFVQS  D  LF K  + G++A+++YVDD++I+G     I 
Sbjct: 984  LKQVSRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIM 1043

Query: 1731 NLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPF 1910
             +K  L + F+IKDLG   YFLGLE  RS+QG  +CQRKY ++LL+DTGL+  KP STP 
Sbjct: 1044 KVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPM 1103

Query: 1911 PQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAI 2090
                 +       ++D   +RRLVGRL+YL  +RPD+++ V +LSQF+H P  AH+  A 
Sbjct: 1104 DHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAAR 1163

Query: 2091 HLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXX 2270
             +L+Y+K T + GLF+P     +   Y D+DW TC  +R+SI+G+C F GN+L       
Sbjct: 1164 KVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKK 1223

Query: 2271 XXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFH 2450
                    +EAEYR++A  VCE +WL+ L  D QL   +PI L CDN++AL+I ANPVFH
Sbjct: 1224 QNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFH 1283

Query: 2451 ERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGMCSSTH 2630
            ERTKH++IDCH VR+Q +AGFI    I++  Q AD+ TK L    F+ F+ KLG+ + T 
Sbjct: 1284 ERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSNFT- 1342

Query: 2631 IPT*RGGV 2654
             P+ R GV
Sbjct: 1343 TPSLREGV 1350


>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1423

 Score =  774 bits (1998), Expect = 0.0
 Identities = 409/908 (45%), Positives = 571/908 (62%), Gaps = 24/908 (2%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            K  RL FP S   +E  F+LIH+DIWGP    S+    Y LTIVDD +R TWI+ MK+K 
Sbjct: 532  KHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFFMKNKF 591

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E  L +  F++ VQ QFQ+++K +R+DNG+EFL    ++ +A+ GI+HQ SC  TPQQNG
Sbjct: 592  ETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEFL---LKDWYAKLGIVHQTSCVNTPQQNG 648

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            VVERKH+HIL +ARALMFQS + K FW Y +  AVH++N LP+  LQ  SP+ +LY E P
Sbjct: 649  VVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKP 708

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             +   KVFGCL FAS L   R K EPR+  C+FLGY +G KG+ +Y+L T+E FISRDV 
Sbjct: 709  DFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQ 768

Query: 723  FHESNFPFHNGNS---------SAAEIPLP------------IQAIEFEEDAGE-EVTHV 836
            F+E+ FP     S           A++PL             +   E E ++    +T+ 
Sbjct: 769  FYENIFPLQKDFSIQSTDGPVVPIAQMPLTSCDPIPSHTHDNLDETEHEHNSSTLPMTNS 828

Query: 837  SQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTY 1016
            S   Q +++  I +   T +     RV++ P +LQDY     H      K+        Y
Sbjct: 829  SNSDQPNIEINIPEIRRTSQ-----RVKNRPGYLQDY-----HCTLAASKVDQSSSTARY 878

Query: 1017 DLDCFPFNYSPHMSSTYAVFLSHISNSAS--EPTSYLEAAKDASWREAMNKELAALEENE 1190
             +     +Y P+ S + AV  S +S  +S  EP SY +A     W+EA+  EL AL++ +
Sbjct: 879  PIS----DYLPYTSYS-AVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQK 933

Query: 1191 TWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKL 1370
            TW LT LP  K+A+G +WV+K+K ++DG+++RYKARLVAKG+ QI G+D++++FSPV ++
Sbjct: 934  TWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRM 993

Query: 1371 VTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYG 1550
             T+R+ +A+A    W +H +DIN AFLHG L EEVYM PP G   +   +VC L++SLYG
Sbjct: 994  TTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYG 1053

Query: 1551 LKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQ 1730
            LKQASRQWN++ +E L  FGFVQS  D  LF K  + G++A+++YVDD++I+G     I 
Sbjct: 1054 LKQASRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIM 1113

Query: 1731 NLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPF 1910
             +K  L + F+IKDLG   YFLGLE  RS+QG  +CQRKY ++LL+DTGL+  KP STP 
Sbjct: 1114 KVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPM 1173

Query: 1911 PQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAI 2090
                 +       ++D   +RRLVGRL+YL  +RPD+++ V +LSQF+H P  AH+  A 
Sbjct: 1174 DHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAAR 1233

Query: 2091 HLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXX 2270
             +L+Y+K T + GLF+P     +   Y D+DW TC  +R+SI+G+C F GN+L       
Sbjct: 1234 KVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKK 1293

Query: 2271 XXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFH 2450
                    +EAEYR++A  VCE +WL+ L  D QL   +PI L CDN++AL+I ANPVFH
Sbjct: 1294 QNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFH 1353

Query: 2451 ERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGMCSSTH 2630
            ERTKH++IDCH VR+Q +AGFI    I++  Q AD+ TK L    F+ F+ KLG+ + T 
Sbjct: 1354 ERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSNFT- 1412

Query: 2631 IPT*RGGV 2654
             P+ R GV
Sbjct: 1413 TPSLREGV 1420


>gb|PNX93476.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1454

 Score =  773 bits (1995), Expect = 0.0
 Identities = 412/906 (45%), Positives = 556/906 (61%), Gaps = 27/906 (2%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ R SFP+S+   +  FELIH D+WGPY  PS    SY LTIVDD +RG WIYLM +K+
Sbjct: 557  KQTRTSFPISSSKADDLFELIHCDVWGPYSVPSSCGASYFLTIVDDHSRGVWIYLMANKT 616

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+   I  F A+ Q QF + VKR+RSDNG EF S   +N FA +GI  + SC  TPQQNG
Sbjct: 617  EVAKLIKNFCAMTQTQFNKIVKRIRSDNGTEFTS--LRNYFATQGISFETSCVGTPQQNG 674

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
              ERKHRHIL +ARAL FQ+ LP +FW   +L A +++N  P++ LQ K+P+ +++   P
Sbjct: 675  RAERKHRHILNVARALRFQANLPIEFWGECILTAGYLINRTPTSALQGKTPYHVIFGHNP 734

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             Y+  K FGCLCFASK+   R KF PR+  CIF+GY  G KG+RLY++DT++ F SRDVV
Sbjct: 735  IYNHIKTFGCLCFASKIPRDRDKFAPRSRKCIFVGYPYGKKGWRLYDIDTRDYFNSRDVV 794

Query: 723  FHESNFPFHNGNSSA------------------------AEIPLPIQAIEFEEDAGEEVT 830
            F+E++FP+ +  SS+                        A  P PIQ      +   ++ 
Sbjct: 795  FYENHFPYKHSISSSPTATNTVHPAVYDMEFVVHTTSQDATFPPPIQEQVSTTNNDIDML 854

Query: 831  HV--SQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKK 1004
             V  S    TD  +  +DS +     R  RVR     L+D+V +T               
Sbjct: 855  EVRGSDHVMTDPATISSDSNVR----RSTRVRQQSVRLRDHVCHTARRFDPPSASSSQSP 910

Query: 1005 PT-TYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALE 1181
            P+ T       +    + S++++ FL+ ++ +  EPT + EA + + WR+AM KE+ ALE
Sbjct: 911  PSGTTPYPIANYVTCNNFSTSHSRFLAAVT-AGFEPTRFSEAVRYSPWRDAMRKEIEALE 969

Query: 1182 ENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPV 1361
             N TW +  LP GKK IG KWVYKIK NS+GTI+R+KARLV  G  Q+ GVDF E+F+PV
Sbjct: 970  NNGTWTIEDLPPGKKTIGCKWVYKIKYNSNGTIERHKARLVVLGNNQVAGVDFNETFAPV 1029

Query: 1362 AKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRS 1541
            AK+V++R+ +A+A    W+LH +D++NAFLHG LDEEVYM  P G+     G+VC LR+S
Sbjct: 1030 AKMVSIRVFLAVAVIHGWELHQMDVHNAFLHGDLDEEVYMCLPPGFSGVSPGKVCRLRKS 1089

Query: 1542 LYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAA 1721
            LYGL+QA R W  + +  L  FGFVQS  D  LF     G  L +++YVDD++I G+ +A
Sbjct: 1090 LYGLRQAPRNWFSKLASALKSFGFVQSYADYSLFSLERHGIVLHILVYVDDLIIAGNDSA 1149

Query: 1722 LIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVS 1901
             I N K YL   F +KDLG  KYFLGLE+ R   G  + QRKY +D++ + GL+G KP  
Sbjct: 1150 AIANFKAYLSTCFHMKDLGTLKYFLGLEIARGPDGLFISQRKYALDIISEAGLLGAKPCD 1209

Query: 1902 TPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWD 2081
             P  Q + +    S        +RRLVGRL+YL ++RP++ Y V  L+QF+ +P EAHW+
Sbjct: 1210 FPMEQNHQLALDTSPNLEHPDCYRRLVGRLIYLTITRPELCYAVHTLAQFMQSPKEAHWN 1269

Query: 2082 VAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXX 2261
             A+ +L YLKG    GLF       Q  AYCD+D+ TC LTR+S+TGY +  G S     
Sbjct: 1270 SALRILHYLKGHPGQGLFLSKDSSLQLTAYCDSDYATCPLTRRSLTGYFIMLGVSPVSWK 1329

Query: 2262 XXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANP 2441
                       AEAEYRSMA T CEL WL +L   L +  S+P+ L CD++AALHI ANP
Sbjct: 1330 TKKQPTVSRSSAEAEYRSMATTSCELIWLKSLLKSLGVRHSMPMRLFCDSQAALHIAANP 1389

Query: 2442 VFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGMCS 2621
            VFHERTKH+++DCH VR+Q +AG I+  ++ T +Q AD+FTKALG   F+  L KLG+  
Sbjct: 1390 VFHERTKHIEVDCHFVRDQIQAGNIATFYVRTNMQLADIFTKALGKQQFQFLLSKLGI-R 1448

Query: 2622 STHIPT 2639
            + H PT
Sbjct: 1449 NLHAPT 1454


>gb|PNX92993.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1472

 Score =  772 bits (1994), Expect = 0.0
 Identities = 400/917 (43%), Positives = 562/917 (61%), Gaps = 38/917 (4%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ R  FP+S     Q F+LIH D+WGPY   ++    Y LTIVDD +R  W+YL+  K 
Sbjct: 560  KQIRDVFPISNNKAMQNFQLIHCDVWGPYRTLAMCGARYFLTIVDDHSRAVWVYLLNDKK 619

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+ +H+ +F+ +V+ QF   VK +RSDNG EF      + F E GILH+ SCP TPQQNG
Sbjct: 620  EVSVHLRQFLIMVERQFDMRVKTIRSDNGTEFTC--LGHYFREHGILHETSCPGTPQQNG 677

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKHRHIL +ARAL FQ+ LP  FW   +LAA +++N  PS++L  K+PFELLY + P
Sbjct: 678  RVERKHRHILNVARALRFQANLPIDFWGECILAAGYLINRTPSSILNGKTPFELLYGKSP 737

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
                 +VFGCLC+      +  KFE R+  CIF+GY  G KG+R+Y+L+T    ISRDVV
Sbjct: 738  PLTHLRVFGCLCYVHNQDRRGDKFESRSRRCIFVGYPYGKKGWRVYDLETSAFLISRDVV 797

Query: 723  FHESNFPFH---------------------------NGNSSAAEIPLPIQAIEFEEDAGE 821
            F E  FPFH                           +GN+S+ E  L +  +    + G 
Sbjct: 798  FCEDTFPFHKSLNHPMSQPSTADMWTYDCDNNEHLIDGNNSSNETHLFVDGVGDSVNTGT 857

Query: 822  EVTHVSQKQQTDVQSPITDSEITDR-----------LGRGHRVRHAPSWLQDYVTNTVHH 968
            E++ V+  Q +   S  ++    D+           LGRGHR++   + L+ +VT+ V +
Sbjct: 858  ELSDVNDGQNSAATSAGSNINNEDKGGSENINGEEKLGRGHRIKMPSTKLKGFVTHAVCN 917

Query: 969  GSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWR 1148
             S +       + +        F  S + S  Y  FL+ I+ + +EP ++ EA K   WR
Sbjct: 918  LSPSTSSLPPSQSSGTPYPIAHFVNSSNFSPKYQYFLAAIT-AGNEPRTFAEAVKYKQWR 976

Query: 1149 EAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIE 1328
             AM  E+ ALE N TW + +LP GKK+IG KWVYKIK +SDG+I+RYKARLV  G  Q+E
Sbjct: 977  TAMQLEIQALENNNTWTVETLPHGKKSIGCKWVYKIKYHSDGSIERYKARLVILGNNQVE 1036

Query: 1329 GVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKA 1508
            G+D+ E+F+PVAK+VTVR  +A+A  R+W+LH +D++NAFLHG L+EE+YM  P G+H +
Sbjct: 1037 GLDYNETFAPVAKMVTVRTFLAVAAARKWELHQMDVHNAFLHGDLEEEIYMKLPPGFHSS 1096

Query: 1509 KKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYV 1688
               + C LR+SLYGLKQA R W  + S  L  +GF QS  D  LF  H     L +++YV
Sbjct: 1097 APNQACRLRKSLYGLKQAPRCWFAKLSAALKKYGFKQSGSDYSLFTLHKGHVQLNVLVYV 1156

Query: 1689 DDVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLK 1868
            DD++++G+  + IQ+ K YL   F +KDLG  +YFLG+E+ R++ G  LCQRKY +D++ 
Sbjct: 1157 DDLIVSGNDTSAIQSFKNYLSTCFYMKDLGMLRYFLGIEVARNSTGIFLCQRKYALDIIS 1216

Query: 1869 DTGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQ 2048
            + G++G KP   P  Q ++++       ++  K+RRLVGRL+YL+++RP++SY V  L+Q
Sbjct: 1217 EVGMLGAKPAQIPMDQNHHLSLVDGPLLSEPEKYRRLVGRLIYLSVTRPELSYCVHMLAQ 1276

Query: 2049 FVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYC 2228
            F+  P   HW+ A+ ++KYLKG    G+F       Q  A+CD+DW +C LTR+S+TG+ 
Sbjct: 1277 FMQQPRLPHWEAALRVVKYLKGNPGQGIFLRADSDLQLYAWCDSDWASCPLTRRSLTGWL 1336

Query: 2229 VFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCD 2408
            +  GNS                AEAEYRS+A T CELKWL  L   L +S   P+ ++CD
Sbjct: 1337 ILLGNSPISWKTKKQHTVSRSSAEAEYRSLATTTCELKWLKELLSFLGVSHQRPMKVYCD 1396

Query: 2409 NKAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAF 2588
            ++AA+HI ANPVFHERTKH+++DCH VR++   G IS  ++ST  Q AD+FTKALG   F
Sbjct: 1397 SQAAMHIAANPVFHERTKHIEVDCHFVRDELLCGNISTHYVSTRTQLADIFTKALGKQQF 1456

Query: 2589 RTFLLKLGMCSSTHIPT 2639
              FL KLG+  + H PT
Sbjct: 1457 DYFLGKLGI-QNLHAPT 1472


>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1136

 Score =  756 bits (1952), Expect = 0.0
 Identities = 400/877 (45%), Positives = 544/877 (62%), Gaps = 6/877 (0%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ +LSFPLS  +  Q F+L+H+DIWGP    S+    Y L IVDD TR TW++LM++KS
Sbjct: 270  KQKKLSFPLSHSYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQNKS 329

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E   HI  FI  V+ QF ++VK +R+DNG EF   Q    F+ +GI+HQ +C  TPQQNG
Sbjct: 330  ETRQHIINFINQVETQFDKNVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCVETPQQNG 386

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            +VERKH+H+L + R+L+FQ+ LP  FW + L  A  ++N +P+  L   SPFE LY  P 
Sbjct: 387  IVERKHQHLLNVTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPC 446

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
                 +VFGCLC++S +   R K +PRA  CIFLG+    KGY L NL T  + +S++V+
Sbjct: 447  DISILRVFGCLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVI 506

Query: 723  FHESNFPFH---NGNSSAAEIPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEITD 893
            FHE +FP     N  S ++ +P+P    ++       +   S+    D  S         
Sbjct: 507  FHEDHFPSFTKPNSPSFSSPVPIPYNYADYPSFPSSSIVESSEPPPPDQHSS------PP 560

Query: 894  RLGRGHRVRHAPSWLQDY---VTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSST 1064
             L R  R R  P++LQD+    T+T  H ST     G++ P         F     +S +
Sbjct: 561  PLRRSTRPRRPPTYLQDFHGAFTSTGPHSST-----GIRHPL------HSFISYDRLSPS 609

Query: 1065 YAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKW 1244
            +  ++  IS S ++P +++EA+K  SW +AM++E++ALE N TW LT+LP  K AIG +W
Sbjct: 610  FHHYVFSIS-SVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRW 668

Query: 1245 VYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLH 1424
            VYK+K  +DG+IDRYKARLVAKGY Q+EG+DF ++FSPVAKL TVR+L++LA      L 
Sbjct: 669  VYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLK 728

Query: 1425 HIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLG 1604
             +D+NN+FLHG L+EEVYM  P G   +  G+VC L+RSLYGLKQASRQW    S  L+ 
Sbjct: 729  QLDVNNSFLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQ 788

Query: 1605 FGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHA 1784
             G+V S  D+ LF+K       A++IYVDD+++ G+    I +L + LH  F IKDLG+ 
Sbjct: 789  HGYVPSPSDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNL 848

Query: 1785 KYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIG 1964
            KYFLGLE+ R++ G HLCQRKY +DLL DTG++  KPVSTP     +++A + TPF D  
Sbjct: 849  KYFLGLEVARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTA 908

Query: 1965 KFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPV 2144
             +RRLVGRL+YL  +RP I+Y VQQLSQFV  P  AH      +L YLKGT   G+F  V
Sbjct: 909  AYRRLVGRLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSV 968

Query: 2145 GDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAA 2324
                Q  A+ D DW  C  TR+SITG+ V+ G+SL               +EAEYR++A 
Sbjct: 969  NSSVQLRAFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALAT 1028

Query: 2325 TVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFK 2504
            T CEL+WL  L  D  +    P  L+CDN+ AL I +NP+FHERTKH++IDCHIVR++  
Sbjct: 1029 TTCELQWLSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVS 1088

Query: 2505 AGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
             G +    +S+ LQ AD+ TK L    F +   KLGM
Sbjct: 1089 TGLLKLLPVSSSLQLADILTKPLSPFVFHSHYSKLGM 1125


>gb|KZV25004.1| Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras
            hygrometricum]
          Length = 1404

 Score =  764 bits (1974), Expect = 0.0
 Identities = 403/876 (46%), Positives = 547/876 (62%), Gaps = 5/876 (0%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ RL        + + FEL+HID WGP+ + SV    +  TIVDD +R TW+Y++K KS
Sbjct: 557  KQRRLPLASRNNISARIFELLHIDTWGPFSQTSVDGFRFFFTIVDDHSRYTWVYMLKSKS 616

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            ++      F  +V  QF  +VK VRSDN  E       + FA+ GI H  SC   PQQN 
Sbjct: 617  DVLSIFPDFCRMVSTQFGVTVKSVRSDNAPEL---GFADFFAKAGITHYHSCVERPQQNS 673

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            VVERKH+HIL +ARAL+FQS +P  +W   +  +V+++N  PS +L  K+PFELL+ + P
Sbjct: 674  VVERKHQHILNVARALLFQSHIPLDYWCDCINTSVYLINRTPSPILAHKTPFELLHGKLP 733

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             Y   KVFGCLC+AS L   R KF PRA  C+F+GY  G KGY+L NL+T E+FISRDV+
Sbjct: 734  SYSHLKVFGCLCYASTLLSSRHKFSPRAIRCVFIGYPPGYKGYKLLNLETNEIFISRDVI 793

Query: 723  FHESNFPFHNGNSSAAEIPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEITDRLG 902
            FHE+ FP+ N +      P+ +  + FE     ++T           S   D++   R  
Sbjct: 794  FHENTFPYQNTS------PMSLSDMTFEVSPSSQIT----------PSIPADAQQHSRTS 837

Query: 903  RGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYAVFLS 1082
            R H   + PS L+DY   ++    +T         T + +     NYS  +SS++  F+ 
Sbjct: 838  RPH---NTPSHLRDYHCYSISTPCST--------STAHPIHPL-VNYSK-LSSSHRAFVQ 884

Query: 1083 HISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKR 1262
            +IS S  EPT++ +A     WR+AM++EL ALE N TW + SLP GK A+G +WVYK K 
Sbjct: 885  NIS-SILEPTTFSQAVSLPEWRQAMDEELKALELNHTWSIVSLPQGKSAVGCRWVYKAKF 943

Query: 1263 NSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINN 1442
             +DG++ RYKARLVAKGY Q EG+D++E+FSPVAKLVTVR L+ALA  R W L  +D+NN
Sbjct: 944  AADGSLQRYKARLVAKGYTQQEGLDYLETFSPVAKLVTVRTLLALAAVRGWFLIQLDVNN 1003

Query: 1443 AFLHGYLDEEVYMLPPEGYHKAKKGE-----VCLLRRSLYGLKQASRQWNLEFSEKLLGF 1607
            AFLHG L EEVYM  P G+    +GE     VC L +S+YGLKQASRQW  +FS  LL  
Sbjct: 1004 AFLHGDLTEEVYMTLPPGF--CSEGELPSRAVCKLHKSIYGLKQASRQWFAKFSSTLLSI 1061

Query: 1608 GFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAK 1787
            GF+QS  DN LF++ D   +LALV+YVDD++I  +       LK +L+  F +KDLG+ K
Sbjct: 1062 GFIQSHADNSLFIRSDKNIFLALVVYVDDIVIATNDQNAASELKDFLNSKFKLKDLGNLK 1121

Query: 1788 YFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGK 1967
            YFLG+E+ RS +G  +CQR Y M LL + GL+GCKP +TP      +   +    +D   
Sbjct: 1122 YFLGIEVARSTRGVSICQRNYAMTLLTEAGLLGCKPRTTPMEANTKLAQDSGEMLSDPAS 1181

Query: 1968 FRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVG 2147
            +RRL+GRLLYL ++RPD+ + V +LSQ+V  P   H + A+++LKY+KGT+  GLFY   
Sbjct: 1182 YRRLIGRLLYLTITRPDLVFAVNKLSQYVSMPRIPHMEAALNILKYVKGTVGQGLFYSSS 1241

Query: 2148 DCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAAT 2327
               +  A+ DADWG CL TR+S+TGYCVF G SL               AEAEYRS+AA+
Sbjct: 1242 SDLKLRAFSDADWGACLDTRRSVTGYCVFLGESLISWRAKKQQTVSRSSAEAEYRSLAAS 1301

Query: 2328 VCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFKA 2507
             CE+ W++ L  DL ++ + P  L CD++AA+HI +NPVFHERTKH+DIDCHIVR + + 
Sbjct: 1302 TCEILWIHQLLADLGVTYNEPTVLFCDSQAAVHIASNPVFHERTKHIDIDCHIVREKVQQ 1361

Query: 2508 GFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
              +   H+S+  Q ADLFTK L  + F   L K+G+
Sbjct: 1362 KIVKLMHVSSERQLADLFTKPLLPSRFHNLLKKMGV 1397


>gb|PNY12308.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1449

 Score =  765 bits (1976), Expect = 0.0
 Identities = 406/911 (44%), Positives = 559/911 (61%), Gaps = 32/911 (3%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ R SFPLS      AF+L+H D+WGPY  PS     Y LTIVDD++R  WI+L+  K 
Sbjct: 549  KQTRDSFPLSNHKVCNAFDLVHCDLWGPYKTPSSCGAYYFLTIVDDYSRAVWIFLLLDKK 608

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E    +  FIAL++ Q+++ VK +RSDNG EF   ++Q  F+E GI+ Q SC  TPQQNG
Sbjct: 609  EAPRALLNFIALIKRQYEKEVKMIRSDNGTEFTCLRSQ--FSELGIMFQTSCTGTPQQNG 666

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKHRHIL +ARAL FQ  LP  FW   +L A +++N  P+ LL  KSP+E+L  +PP
Sbjct: 667  RVERKHRHILNVARALKFQGNLPISFWGECILTAGYLINRTPTPLLNGKSPYEMLNGKPP 726

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             Y+  KVFG LC+A   G    KF  R+  C+F+GY  G KG++L++LDT   F+SRDV 
Sbjct: 727  SYEHLKVFGSLCYAHNQGRNGDKFASRSRKCVFVGYPHGKKGWKLFDLDTNTYFVSRDVD 786

Query: 723  FHESNFPF-HNGNSSAAEIPLPI---------QAIEFEEDAGEEV--------------- 827
            F E  FPF H+  +S +E    +         + +E EE   +E+               
Sbjct: 787  FFEDEFPFGHSTVTSGSEAMSHMLDEEAISDTEIVESEEITNDELQKGETHGDVRGGQHV 846

Query: 828  --THVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLK 1001
              TH S+   T+ Q    +SE  ++ GRG R +     L+D VTNTV    TT+ +   +
Sbjct: 847  ENTHQSEDVVTNRQPENEESE--EQFGRGKRAKFPSVRLRDCVTNTVQ---TTMSLS-TR 900

Query: 1002 KPTTYDLDCFPFNYSPH-----MSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKE 1166
             PT+       +  S +      S  +  FL+ ++ +  EP ++ EA KD  W  AM +E
Sbjct: 901  SPTSQHQSKVRYPISHYTNCDKFSLQHQQFLAAVT-ADREPMTFAEAVKDNRWNLAMQQE 959

Query: 1167 LAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFME 1346
            + ALE+N TW +  LP  KKA+G KWVYKIK +SDGTI+R+KARLV  G  Q+EG+D+ E
Sbjct: 960  IQALEDNNTWTVCPLPVNKKALGCKWVYKIKYHSDGTIERFKARLVILGNHQVEGIDYTE 1019

Query: 1347 SFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVC 1526
            +F+PVAK+VTVR+++A+A  ++W+LH +D++NAFLHG L EEV+M PP G+  ++ G VC
Sbjct: 1020 TFAPVAKMVTVRIVLAVAAAKRWELHQMDVHNAFLHGDLKEEVFMKPPPGFQPSQPGMVC 1079

Query: 1527 LLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLIT 1706
             LR+SLYGLKQA R W  + S  L  +GF +S  D  LF   D    L +++YVDD++I 
Sbjct: 1080 KLRKSLYGLKQAPRCWFAKLSSALKDYGFTRSYSDYSLFTLQDKDVQLVVLVYVDDLIIC 1139

Query: 1707 GDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMG 1886
            G+    IQ  K YL   F +KDLG  KYFLG+E+ RS  G  LCQRKY +D++ + GL+G
Sbjct: 1140 GNDHDSIQRFKNYLSRCFHMKDLGKLKYFLGVEVARSPAGVFLCQRKYALDIISEVGLLG 1199

Query: 1887 CKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPT 2066
             KP STP  Q +++        A+  ++RRLVGRL+YL  +RP++SY V  LSQF+  P 
Sbjct: 1200 AKPASTPLEQNHHLGLAKGAFVANPDRYRRLVGRLIYLCFTRPELSYCVHVLSQFMQQPR 1259

Query: 2067 EAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNS 2246
              HWD A+ +++YLKG    G+        Q   +CD+DW +C LTR+S+TG+ +F G+S
Sbjct: 1260 TEHWDAALRVVRYLKGNPGQGVLLDSNSDLQLYGWCDSDWASCPLTRRSLTGWIIFLGHS 1319

Query: 2247 LXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALH 2426
                            AEAEYRSMA+T CELKW+  +   L +  S+PI L+CD++AALH
Sbjct: 1320 PVSWKTKKQHTVARSSAEAEYRSMASTTCELKWIKGVLSSLGIIHSMPIQLYCDSQAALH 1379

Query: 2427 ITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLK 2606
            I  NPVFHERTKH+D+DCH +R++     + P ++ T  Q AD FTKALG T F T L K
Sbjct: 1380 IAKNPVFHERTKHIDVDCHFIRDEIVRQNLQPSYVPTHTQLADTFTKALGSTQFYTLLDK 1439

Query: 2607 LGMCSSTHIPT 2639
            LG+  + H PT
Sbjct: 1440 LGIW-NPHAPT 1449


>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1115

 Score =  754 bits (1948), Expect = 0.0
 Identities = 405/875 (46%), Positives = 547/875 (62%), Gaps = 6/875 (0%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ +LS+  S+    + F+LIH+DIWGP+ + S+    Y LTI+DDF+R TW+ L+K KS
Sbjct: 233  KQKKLSYSPSSSRVSKIFDLIHMDIWGPFSKASIHGHKYFLTILDDFSRYTWVVLLKSKS 292

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+  H+  FI LV+NQ++  VK +RSDNG EF     ++ F  +GI+HQ SC YTPQQNG
Sbjct: 293  EVKTHVHNFINLVENQYETKVKCIRSDNGPEFF---LRDFFNSKGIIHQTSCVYTPQQNG 349

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKH+HIL +ARALMFQSKLP  FW Y +  A+ ++N +PS ++  K+PFELL K PP
Sbjct: 350  RVERKHQHILNVARALMFQSKLPSNFWSYAIKHAIFLINRVPSPIISHKTPFELLNKIPP 409

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             +   KVFGCLC+AS    QR KFEPR+   IF+G+  G KG+ + +++T+E+ +SR+V+
Sbjct: 410  DFSMLKVFGCLCYASTHN-QRHKFEPRSRKGIFMGFQNGTKGFVILDINTREILVSRNVI 468

Query: 723  FHESNFPFHNGNSSAAEIPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEITDRLG 902
            FHE++FPFH    ++  I  P   I    D        S    +  Q+P  D+  +    
Sbjct: 469  FHETSFPFHTSAPTSPFITQPSLTISPNPDI-LTTPPTSPNDTSPSQNPNPDASASPSSP 527

Query: 903  RGHRVRHAPSWLQDYVTNT-----VHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTY 1067
                     S +  Y T+T      HH S++  I     P   + D  P    P   S Y
Sbjct: 528  AAPTSPFHDS-ISSYPTSTDFDIVPHHRSSSPAI---PPPRRSERDIHP----PPYLSEY 579

Query: 1068 AVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWV 1247
               L  + +  S   S     ++  WREAM  EL ALE N TW +   P+  + IG KWV
Sbjct: 580  QYKLPSLKSVQSSTRSI----QNPCWREAMTCELKALELNHTWDVVETPSHVRPIGCKWV 635

Query: 1248 YKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHH 1427
            +KIKR  +G+I+RYKARLVAKGY QIEG+D+ E+FSPV K+ TVR+++ALA+  QW +  
Sbjct: 636  FKIKRLPNGSIERYKARLVAKGYSQIEGIDYFETFSPVVKMTTVRVVLALASINQWHIQQ 695

Query: 1428 IDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEFSEKLLGF 1607
            +D++NAFLHG L E+VYM  P+G         C LR+SLYGLKQ+SR+W  + S  LL  
Sbjct: 696  LDVSNAFLHGDLLEDVYMELPQGLTGYSSSHSCKLRKSLYGLKQSSRKWYEKLSNLLLSN 755

Query: 1608 GFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHAK 1787
            G+ Q+  D+ LF K     + AL+IYVDD+++TG+SAA I  +K  LH  F +KDLG  K
Sbjct: 756  GYKQAHSDHSLFTKRHGSAFTALLIYVDDIVLTGNSAAEITRIKHILHSNFHVKDLGQLK 815

Query: 1788 YFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIGK 1967
            YFLG+E+  S++G  LCQRKY +DLL D+G++GCKP STP      +   AS    D   
Sbjct: 816  YFLGIEVAHSSKGISLCQRKYCLDLLSDSGMLGCKPSSTPMDSTLRLHDDASGYLDDPLP 875

Query: 1968 FRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPVG 2147
            +RRLVGRL+YL  +RPDI++  QQLSQF+  PT AH   A+ +L+YLK     GLF+P  
Sbjct: 876  YRRLVGRLVYLTNTRPDIAFSTQQLSQFMSKPTNAHHAAAMRVLRYLKSCPGTGLFFP-R 934

Query: 2148 DCP-QFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAA 2324
             CP Q + + DADW TC+ +R+SITGYC F GN+L               +EAEYR++A+
Sbjct: 935  VCPIQVSGFSDADWATCVASRRSITGYCFFIGNALISWKTKKQTTVSRSSSEAEYRALAS 994

Query: 2325 TVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFK 2504
              CEL+W+  L  DL +S S    L+CDN +ALHI ANPVFHERTKHLDIDCHIVR + +
Sbjct: 995  ATCELQWIIYLLRDLHISLSQISLLYCDNTSALHIAANPVFHERTKHLDIDCHIVREKTQ 1054

Query: 2505 AGFISPQHISTFLQPADLFTKALGGTAFRTFLLKL 2609
            AG +    + +  Q AD+FTKAL   AF+  L KL
Sbjct: 1055 AGLMKLLPVPSAKQLADIFTKALPPHAFKLNLSKL 1089


>gb|PNY12226.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1464

 Score =  761 bits (1966), Expect = 0.0
 Identities = 409/906 (45%), Positives = 553/906 (61%), Gaps = 35/906 (3%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ +LS+ LST  T + F+L+H+DIWGPY   ++    Y LTIVDDF+R TW+ L+K K+
Sbjct: 561  KQKKLSYSLSTSQTTKCFDLLHMDIWGPYSTATLHGHKYFLTIVDDFSRFTWVILLKGKN 620

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+  H+  FI LV+NQF  +VK VRSDNG EF      + +A +GI+HQ SC YTPQQNG
Sbjct: 621  EVASHVQHFIQLVENQFDSTVKIVRSDNGPEF---SIPSFYASKGIVHQTSCVYTPQQNG 677

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKH+ IL IARAL+ QS LP K+W Y +L +V+++N +PS +++   P+  L+KE P
Sbjct: 678  RVERKHQSILAIARALLIQSHLPAKYWGYAVLHSVYLMNRMPSVVIEGDLPYHKLHKELP 737

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
                 ++FGCLC+ S     R K + RA  C+FLGY +G KG+   +L + EV +SR+V 
Sbjct: 738  DISMLRIFGCLCYVSTNDAHRLKLDHRARKCVFLGYKSGTKGFVALDLHSSEVVVSRNVQ 797

Query: 723  FHESNFPFHNGNSSAAE--------IPLPI------------QAIEFEEDAGEEVTHVSQ 842
            F E  FP+ +   S            P+P              AIE +E      + V Q
Sbjct: 798  FEELIFPYTSQPKSQTNWEFFVPPIDPIPYTTVNPTNNDATPTAIEPDEPIPSTESPVPQ 857

Query: 843  K------QQTDVQSPITDSEITDR--------LGRGHRVRHAPSWLQDYVTNTVHHGSTT 980
                   QQT+    I  +E +          L +  R+   PS L DYV + + H    
Sbjct: 858  TEPSQSIQQTEPSQSIQQNEPSQSIQPPNPPPLRKSTRITKPPSHLADYVCHGIAHS--- 914

Query: 981  LKIGGLKKPTTYDLDCF-PFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAM 1157
                     T Y +  +   N+      TY + L     + +EPTSY EA K   W +AM
Sbjct: 915  ---------TKYPISNYTSHNHISSQQLTYTLSLM----TETEPTSYFEACKHEHWVKAM 961

Query: 1158 NKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVD 1337
              EL ALE+N+TW + SLP G K IGSKWVYKIKR SDG+I+RYKARLVAKGY Q+EG+D
Sbjct: 962  QSELQALEQNKTWTIVSLPTGVKPIGSKWVYKIKRKSDGSIERYKARLVAKGYNQVEGID 1021

Query: 1338 FMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKG 1517
            + E+FSPVAK+ T+R+++A+A+ R W +H +D+NNAFLHG L E+VYM  P+G       
Sbjct: 1022 YFETFSPVAKMTTIRVVLAIASIRNWFVHQLDVNNAFLHGELCEDVYMQIPQGLEGFATD 1081

Query: 1518 EVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDV 1697
            +VC L +SLYGLKQASR+W  + S+ L+   F+Q   D  LFVK     + AL++YVDD+
Sbjct: 1082 KVCKLTKSLYGLKQASRKWYEKLSQFLISHHFIQVPSDPTLFVKKTSDSFTALLVYVDDI 1141

Query: 1698 LITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTG 1877
            ++TGDS A I N+K  LH  F IKDLG  K+FLGLE+  S +G  L QR+Y +DLL +TG
Sbjct: 1142 VLTGDSMAEITNIKNELHHTFGIKDLGILKFFLGLEVAHSTKGITLSQRQYCLDLLAETG 1201

Query: 1878 LMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVH 2057
             +GCKP S P      +    S P+ DI  +R LVG+LLYL  +RPDI++ VQQL QF+ 
Sbjct: 1202 DLGCKPSSIPMDPSLKLHHDDSAPYTDITGYRTLVGKLLYLTNTRPDIAFPVQQLCQFLD 1261

Query: 2058 APTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFF 2237
             PT+ H+  A  +L+YLKG    GL++P     Q   + DADWG C+ TR+SITGYC F 
Sbjct: 1262 CPTQLHYKAAHKVLRYLKGCPGSGLYFPRSSDTQLVGFTDADWGGCVDTRRSITGYCFFL 1321

Query: 2238 GNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKA 2417
            G+SL               +EAEYR++A+  CEL+WL  L  DLQ++      L+CD+++
Sbjct: 1322 GSSLICWKSKKQQTISRSSSEAEYRALASGTCELQWLTYLLRDLQVTLIQQPSLYCDSQS 1381

Query: 2418 ALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTF 2597
            A+HI +NPVFHERTKHLDIDCH+VR + +AG +    +S F Q AD+ TKAL    F   
Sbjct: 1382 AIHIASNPVFHERTKHLDIDCHVVRERLQAGLMKLLPVSGFQQLADIMTKALHPANFHRL 1441

Query: 2598 LLKLGM 2615
            L KLG+
Sbjct: 1442 LTKLGL 1447


>gb|PNX95321.1| retroelement pol polyprotein-like [Trifolium pratense]
          Length = 1433

 Score =  759 bits (1959), Expect = 0.0
 Identities = 389/900 (43%), Positives = 544/900 (60%), Gaps = 30/900 (3%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQCRL F +S    E  F+LIH D+WG Y   S +   Y LTIVDD++RGTW+YL+K K+
Sbjct: 534  KQCRLPFHISYNKAENPFDLIHCDLWGKYRTSSHSGCHYFLTIVDDYSRGTWVYLLKEKT 593

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+   ++ FI +V  QF   +KR+RSDNG EF ++  Q +    GILH+ SC  TPQQN 
Sbjct: 594  EVLRILTNFINMVNTQFNVKIKRLRSDNGTEFTNHAFQGILQREGILHETSCVGTPQQNA 653

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKHRHIL +ARAL FQ+ LP  FW   +L A +++N  PS +    +P+E L  +P 
Sbjct: 654  RVERKHRHILNVARALRFQANLPISFWGECVLTATYLINRTPSMINDGLTPYEKLLGKPS 713

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             Y+  K FGCLC+      Q+ KF+ RA  C+F+GY  G KG+ +YNL T+E+++SRDVV
Sbjct: 714  SYEHIKTFGCLCYVKNSNKQQDKFDSRAEKCVFVGYPKGQKGWTVYNLKTQEIYVSRDVV 773

Query: 723  FHESNFPF------HNGNSSAAEIPLPI----------------QAIEFEEDAGEEVTHV 836
            F+E  FP+       NG + ++   L                  Q I   E   E+V   
Sbjct: 774  FYEDIFPYASQEKDSNGENHSSTFSLDFCSVGEEIVPSNDGQQDQIIISNEQREEQVVET 833

Query: 837  SQKQQTDVQSPIT--DSEITDRLGRGHRVRHAPSWLQDY------VTNTVHHGSTTLKIG 992
            +    T+V+ P    +SE    +  G R R  P  L DY      +T+T     T+   G
Sbjct: 834  NSDVITEVEEPQNKGESETMINIDMGPRNRRPPKRLDDYYCYSAEITHTCTSPKTSTSSG 893

Query: 993  GLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELA 1172
             +   + Y       NY    S  Y  +L+ +  S  EP S+ +A     WREAM++EL 
Sbjct: 894  IIYPISNY------VNYD-EFSQKYQAYLAAVE-SIEEPQSFKQAIHKQEWREAMSQELK 945

Query: 1173 ALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESF 1352
            ALEEN+TW+++ LP GKKA+G +WVYK+K  S G +++YKARLVAKGY Q+EG DF E+F
Sbjct: 946  ALEENKTWEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETF 1005

Query: 1353 SPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLL 1532
            +P AK+ TVR L+ +A  + W+LH +D++NAFLHG LDEEVYM  P GY    K  VC L
Sbjct: 1006 APDAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYRVPDKEMVCRL 1065

Query: 1533 RRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGD 1712
            R+SLYGL+QASR W  + S+ L+ +GF +   D+ LF       ++A++IYVDD+++TG+
Sbjct: 1066 RKSLYGLRQASRNWYSKLSQALVKYGFHECEADHSLFTYSHGSIFIAVLIYVDDLVVTGN 1125

Query: 1713 SAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCK 1892
             A   +  K YL++ F +KDLG  KYFLGLEL R + G  +CQRKY +D+L + G++ CK
Sbjct: 1126 DAKSCEKFKQYLNKCFHMKDLGELKYFLGLELARGSSGLFICQRKYALDILNECGMLACK 1185

Query: 1893 PVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEA 2072
            P S P    + +   +S  + +  ++RRLVGRL+YL ++RP+++Y V  LSQF+  P + 
Sbjct: 1186 PSSIPLEPNHKLALDSSPLYENPSQYRRLVGRLIYLTITRPELTYSVHILSQFMQEPHQG 1245

Query: 2073 HWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLX 2252
            HWD A+H+L+YLK +   G+  P  +  +  AYCD+D+ +C LTR+SI+GY +  G +  
Sbjct: 1246 HWDAAMHVLRYLKSSPGQGIIIPRDNDLRLVAYCDSDYASCPLTRRSISGYVMKLGTAPI 1305

Query: 2253 XXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHIT 2432
                          +EAEYR+MA    E+ WL  L   LQ+    P  LHCDN+AA+H+ 
Sbjct: 1306 SWKTKKQTTVSRSSSEAEYRAMAHATSEVIWLRRLLTHLQVRCDSPTVLHCDNRAAIHLA 1365

Query: 2433 ANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLG 2612
            +NPVFHERTKH+++DCH +R     G IS  HI T  Q AD+FTK+LG   FR    KLG
Sbjct: 1366 SNPVFHERTKHIEVDCHFIREFLVKGIISTVHIPTKSQQADIFTKSLGTKQFRELSDKLG 1425


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  755 bits (1949), Expect = 0.0
 Identities = 404/893 (45%), Positives = 553/893 (61%), Gaps = 22/893 (2%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPY-LEPSVTNTSYMLTIVDDFTRGTWIYLMKHK 179
            KQ +LSF  S     + F L+H+DIWGPY    S+    +  TIVDD T  TWI+LM +K
Sbjct: 484  KQRKLSFSSSHSTASRPFSLLHMDIWGPYSCISSIHGHKFFFTIVDDNTHFTWIFLMINK 543

Query: 180  SEIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQN 359
            SE  +HIS FI L++NQF   ++ +++DNGAEFL    QN F  +GI+HQ +C  TPQQN
Sbjct: 544  SETRMHISNFINLIENQFNTRIQTIQTDNGAEFLM---QNFFNSKGIVHQTTCIETPQQN 600

Query: 360  GVVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEP 539
            GVVERKH+H+L +  AL+F SKLP  FW Y LL A +++N + + LL  K+PF+ LY + 
Sbjct: 601  GVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLINRITTPLLDNKTPFQKLYGQT 660

Query: 540  PKYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDV 719
                  +VFGCLC+ S     R K +PRA  C+FLG+    KGY  Y+L T+ + ISR+V
Sbjct: 661  CDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNV 720

Query: 720  VFHESNFPFHNGNSSAAEIPLPIQAIEF--EEDAGEEVTHVSQKQQTDVQSPITDSEITD 893
             F+E++FP     SS + IP+ +  I F     + + ++ +    Q +V SP   +   D
Sbjct: 721  SFYENHFPLLQSTSSTSNIPV-VSPISFGIHSPSHDLISILPDPHQHNVTSPNPATTSHD 779

Query: 894  RLG-------------------RGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTY 1016
             +                    R  R+R+ PS+LQDY      H S T     L     Y
Sbjct: 780  SISLAPYSTTADSLPPNSSPLRRSTRLRNPPSYLQDY------HHSLTSTSTNLHPGMLY 833

Query: 1017 DLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETW 1196
             ++ +  +YS  +S+ +  F+S IS + SEP SY EAAK   W +AM+ EL AL+ N+TW
Sbjct: 834  PIEKY-ISYS-RLSNDFQAFVSSIS-AVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTW 890

Query: 1197 QLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVT 1376
             LT LP  K+A+G +W+YKIK N+DG+I+RYKARLVAKGY Q+EG+D++ +FSPVAKL T
Sbjct: 891  TLTPLPPHKQAVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTT 950

Query: 1377 VRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLK 1556
            VR+L+ALA    W L  +D+NNAFLHG L+EEVYM  P G       +VC L++SLYGLK
Sbjct: 951  VRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYGLK 1010

Query: 1557 QASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNL 1736
            QASRQW  + S  L+  G+ QS  D+ LF+K       AL+IYVDD+++ G++ + IQ +
Sbjct: 1011 QASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLI 1070

Query: 1737 KTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQ 1916
               L   F IKDLG+ KYFLGLE+ R+  G HL QRKY++D+L D G+M  +PVSTP   
Sbjct: 1071 TGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDY 1130

Query: 1917 GYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHL 2096
               ++A + TP AD   +RRL+GRL+YL  +RPDISY V  LSQF+ AP+ AH      +
Sbjct: 1131 TSRLSASSGTPLADPSSYRRLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIFRI 1190

Query: 2097 LKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXX 2276
            L+YLK     GLF+P        A+ D+DW  CL TR+SITG+ V+ G+SL         
Sbjct: 1191 LRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKKQP 1250

Query: 2277 XXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHER 2456
                  +EAEYR++A T  EL+WL  L  DL +    P  L+CDN++ALHI AN VFHER
Sbjct: 1251 TVSRSSSEAEYRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFHER 1310

Query: 2457 TKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
            TKH+DIDCH+VR + ++G +    +++  Q AD+FTK+L  + F     KLGM
Sbjct: 1311 TKHIDIDCHLVREKLQSGLLKLLPVASPHQLADIFTKSLSPSMFTALYSKLGM 1363


>gb|PNX93622.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1454

 Score =  756 bits (1952), Expect = 0.0
 Identities = 400/916 (43%), Positives = 553/916 (60%), Gaps = 37/916 (4%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ R  F LS      AFELIH D+WGPY   S     Y +TIVDD++R  WIYL+  K 
Sbjct: 550  KQTREKFSLSEHVANDAFELIHCDLWGPYRTASSCGAFYFVTIVDDYSRAVWIYLIGDKR 609

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+   +  F  L++ QF + VK  RSDNG EF+    +  F E GI+ Q SC  TPQQNG
Sbjct: 610  EVSQTLINFFTLIKRQFDKQVKIFRSDNGTEFVC--MKRYFHENGIIFQTSCVGTPQQNG 667

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             VERKHRHIL +ARAL FQS LP  FW   +LAA ++LN  PSA+L  K+P+E+L+ + P
Sbjct: 668  RVERKHRHILNVARALRFQSNLPIDFWGECILAAGYLLNRTPSAILNGKTPYEMLHGQAP 727

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
              +  +VFGCLC+A  L  +  KF  ++  CIF+GY  G KG+RL++L+ +E F+SRDV 
Sbjct: 728  SLEHIRVFGCLCYAHNLNRKGDKFASKSRKCIFIGYPYGKKGWRLFDLENREQFVSRDVE 787

Query: 723  FHESNFPFHNGNSSAAE-----IPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITD--- 878
            F E+ +PF +     +E     +P    A + +E+  ++   V +   +D   P  D   
Sbjct: 788  FFETEYPFASTAEVVSERILTHVPHDEDA-DLDEEELDKGVEVGETLCSDQGHPTLDEKG 846

Query: 879  -----------------------SEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKI 989
                                   S+  + LG+G R +   + L+ +VT+T    S + ++
Sbjct: 847  GNEIEVEDQLNLEALSENVAELPSQTIETLGKGQRQKFPSTKLKGFVTHTAQKISPSSQL 906

Query: 990  ------GGLKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWRE 1151
                   G+  P T+ ++   F      S  +  F++ + ++  EPTSY+EA KD  WRE
Sbjct: 907  PSLSSFSGMPYPITHYVNLEKF------SLAHRAFVAGLDHN-KEPTSYVEAVKDHRWRE 959

Query: 1152 AMNKELAALEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEG 1331
            AM  E+ ALE N TW +T LP GKK +G KWVYKIK  SDGT++R+KARLV  G  QIEG
Sbjct: 960  AMQSEIQALENNGTWSVTHLPPGKKKLGCKWVYKIKHKSDGTVERFKARLVILGNHQIEG 1019

Query: 1332 VDFMESFSPVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAK 1511
            +D+ E+F+PVAK+VTVR ++A+A  + W+LH +D++NAFLHG L EEV+M PP G+H  +
Sbjct: 1020 IDYNETFAPVAKMVTVRTVLAVAATKNWELHQMDVHNAFLHGDLQEEVFMKPPPGFHTTQ 1079

Query: 1512 KGEVCLLRRSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVD 1691
             G VC L +SLYGLKQA R W  + S  L  +GF QS +D  LFV      +LA+++YVD
Sbjct: 1080 PGMVCRLHKSLYGLKQAPRCWFAKLSTALKTYGFEQSLYDYSLFVLQRQDCFLAVLVYVD 1139

Query: 1692 DVLITGDSAALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKD 1871
            D++ITG+    I   KTYLH  F +KDLG  KYFLG+E+ RS  G  LCQRKY +D++ +
Sbjct: 1140 DLIITGNDHTAISAFKTYLHTCFHMKDLGTLKYFLGVEVARSPTGILLCQRKYALDIISE 1199

Query: 1872 TGLMGCKPVSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQF 2051
            TGL+G KP STP  Q + +        A   K+RRLVGRL+YL  +RP++SY V  LSQF
Sbjct: 1200 TGLLGSKPASTPLEQNHRLALATGDILAQPEKYRRLVGRLIYLCFTRPELSYCVHILSQF 1259

Query: 2052 VHAPTEAHWDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCV 2231
            +  P + HW+ A+ +++YLKG    G+        Q   + D+DW +C LTR+S+TG+ +
Sbjct: 1260 MQQPRQEHWEAALRVVRYLKGNPGQGILLRHDSSLQLYGWSDSDWASCPLTRRSLTGWFI 1319

Query: 2232 FFGNSLXXXXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDN 2411
              GNS                AEAEYRSMA   CELKWL  L   L +S + P+ ++CD+
Sbjct: 1320 LLGNSPISWKTKKQHTVSRSSAEAEYRSMATICCELKWLKGLLSSLGISHTQPMQIYCDS 1379

Query: 2412 KAALHITANPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFR 2591
            +AALHI  NPVFHERTKH+++DCH +R++     I   ++ T  Q AD+FTKALG + F 
Sbjct: 1380 QAALHIAKNPVFHERTKHIEVDCHFIRDEIVKDHIRSTYVPTTAQLADIFTKALGRSQFL 1439

Query: 2592 TFLLKLGMCSSTHIPT 2639
            + L KLG+  + H PT
Sbjct: 1440 SLLGKLGI-HNLHAPT 1454


>gb|KYP64168.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 967

 Score =  738 bits (1906), Expect = 0.0
 Identities = 374/907 (41%), Positives = 542/907 (59%), Gaps = 29/907 (3%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQC+L F  S    E  F LIH D+WG Y   S   + Y LTIVDD++R TW+YLM+HKS
Sbjct: 66   KQCKLPFNHSNNKAEAPFHLIHCDLWGKYNTASQNGSHYFLTIVDDYSRATWVYLMRHKS 125

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E    +  F  +++ QF   VK++RSDNG EF ++  Q    E GI+H+ SC  TPQQN 
Sbjct: 126  ETLDMLKIFCTIIKRQFNVDVKKIRSDNGTEFTNSSFQRYIREEGIVHETSCVGTPQQNA 185

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
             V+RKHRHIL +ARAL F++ LP  FW   +L   H++N  P+      +P+++LY++PP
Sbjct: 186  RVKRKHRHILNVARALCFEANLPIHFWGECVLTTTHLINRTPTIANSGITPYKMLYEKPP 245

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
             YD  ++FGCLC+      ++ KF PR+  C+F+GY    KG+++YNL+T E FISRDV+
Sbjct: 246  SYDHLRIFGCLCYVKNSSKRQDKFMPRSEKCMFIGYPQNKKGWKVYNLETHEFFISRDVI 305

Query: 723  FHESNFPF------------------------HNGNS----SAAEIPLPIQAIEFEEDAG 818
            F++  F +                        H  N      A+++    +  E EE+  
Sbjct: 306  FYKEYFSYKLPARIVFENYTSQERDEYSYNMMHEDNDHVSKDASQVSSEGEHSENEEEIE 365

Query: 819  EEVTHVSQKQQTDVQSPITDSEITDRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIG-G 995
                ++  K   D    + +    +      R R   ++L+DY  + +    + +     
Sbjct: 366  SNSHNIEVKSSND--EDLENQSEGENRAEEKRTRQPLTYLKDYYCHAITVNPSCMTTNPN 423

Query: 996  LKKPTTYDLDCFPFNYSPHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAA 1175
                  Y L  F  +Y  H S  +  +L+ +  S  EP +Y +A K   WR AM +E+ A
Sbjct: 424  NSSGMVYPLSNF-VSYD-HFSHRHRAYLAALG-SHDEPKTYAQAMKHPEWRTAMTQEIKA 480

Query: 1176 LEENETWQLTSLPAGKKAIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFS 1355
            LE+N+ W+LT LP G++ +G KWVYKIK  + G I++YKARLVAKG+ QIEG DF E+F+
Sbjct: 481  LEDNQRWELTHLPPGRETVGCKWVYKIKYKATGEIEKYKARLVAKGFTQIEGEDFNETFA 540

Query: 1356 PVAKLVTVRMLVALATQRQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLR 1535
            PVAK+ T+R L++L   ++W+LH +D++NAFLHG L+EEVYM+ P+GY    KG VC LR
Sbjct: 541  PVAKMTTIRCLLSLTVAKEWELHQMDVSNAFLHGELNEEVYMVVPQGYGVPTKGMVCRLR 600

Query: 1536 RSLYGLKQASRQWNLEFSEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDS 1715
             SLYGL QASR W  + S  L  +GF +   D+ LFV   +  ++A++IYVDD++I  ++
Sbjct: 601  ESLYGLCQASRNWYTKLSHSLEEYGFKECDVDHSLFVYSHNSIFIAVLIYVDDLVIASNN 660

Query: 1716 AALIQNLKTYLHELFTIKDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKP 1895
            +      K YL   F +KDLG+ KYFLGLEL R ++G  +CQRKY +D+L + G++GCKP
Sbjct: 661  SLACAQFKEYLSNCFHMKDLGNLKYFLGLELARDSKGLFICQRKYTLDILNECGMLGCKP 720

Query: 1896 VSTPFPQGYNITAQASTPFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAH 2075
             S P  Q + +     +PF +  ++RRL+G L+YL ++RP+I+Y V  LSQF+ AP + H
Sbjct: 721  TSFPVEQNHRLALATGSPFPEPSQYRRLIGCLIYLTITRPEITYSVHILSQFMQAPLQEH 780

Query: 2076 WDVAIHLLKYLKGTISLGLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXX 2255
            WD A+ +L+YLK +   G+  P  +  +   YCD+DW +C LTRKSI+GY +  G +   
Sbjct: 781  WDAAMRVLRYLKSSPGQGIILPNTNDLRLVGYCDSDWASCPLTRKSISGYLMKLGPTPIS 840

Query: 2256 XXXXXXXXXXXXXAEAEYRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITA 2435
                         +EAEYR++A    E+ WL +L  DLQ+    P  LHCDN+AALH+ A
Sbjct: 841  WKTKKQSTVSRSSSEAEYRAIAHATSEIIWLRSLLKDLQVDCDSPTFLHCDNQAALHLAA 900

Query: 2436 NPVFHERTKHLDIDCHIVRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
            NPVFHERTKH+++DCH +RN  + G I+  +I T  Q AD+FTK+LG   F    +KLG+
Sbjct: 901  NPVFHERTKHIEVDCHFIRNHLEKGTITTSYIPTKEQQADIFTKSLGRKMFLELTVKLGV 960

Query: 2616 CSSTHIP 2636
              + H P
Sbjct: 961  -HNPHTP 966


>gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifolium pratense]
          Length = 865

 Score =  734 bits (1894), Expect = 0.0
 Identities = 395/831 (47%), Positives = 519/831 (62%), Gaps = 31/831 (3%)
 Frame = +3

Query: 240  SVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNGVVERKHRHILEIARALMFQ 419
            SVK +R DNG+EF+S   +  F   GI HQR+C YTPQQNGVVERKHRHIL +ARAL+F 
Sbjct: 45   SVKTIRVDNGSEFMS--MREFFQSHGIEHQRTCVYTPQQNGVVERKHRHILVVARALLFH 102

Query: 420  SKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPPKYDRFKVFGCLCFASKLGP 599
            S LP +FW   +L AV+++N LPS LL  KSPFELLY +PP  D  +VFGCLC+A+ + P
Sbjct: 103  SHLPLEFWGECVLTAVYLINRLPSPLLSNKSPFELLYNKPPSLDHLRVFGCLCYATIVHP 162

Query: 600  QRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVVFHESNFPFHNGNSSAAEIP 779
               KF+PRA   IF+GY TG KGY++Y+ +TK  F+SRDV F E+NFP    N+S   + 
Sbjct: 163  TH-KFDPRAKRGIFVGYPTGQKGYKIYDPETKTFFVSRDVKFCETNFP-SIPNTSEPNLI 220

Query: 780  LPIQAIEFEEDAGEEVTHVSQKQQTDVQS---PITDSEITD------------------- 893
                + E  +D     +   Q QQTD+ S   P + S IT                    
Sbjct: 221  SSHPSYEAIDDLPSPTSSHHQSQQTDIPSTHEPNSPSHITTETSSAASPIVEPTPLTTHT 280

Query: 894  ---------RLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYS 1046
                     ++ +  R +H P W  DY  +T  + + +    G    T Y L  +  +YS
Sbjct: 281  TDPPTPFIPQVRKSVRDKHPPIWHNDYHMSTQVNKTPSEPTSG--SGTRYPLSHY-LSYS 337

Query: 1047 PHMSSTYAVFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKK 1226
              +SS+   FL++I+ +  EP SY +A  D  W++AMN EL ALE+N TW L  LP+G K
Sbjct: 338  -RISSSNCAFLANIT-AHREPQSYDQAVHDPLWQDAMNAELEALEQNNTWSLVPLPSGHK 395

Query: 1227 AIGSKWVYKIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQ 1406
             IG KWVYKIK  SDGTI+RYKARLVAKGY Q+EG+D+ E+FSP AK+ T+R L+ +A  
Sbjct: 396  PIGCKWVYKIKYKSDGTIERYKARLVAKGYTQVEGIDYQETFSPTAKVTTLRCLLTVAAA 455

Query: 1407 RQWDLHHIDINNAFLHGYLDEEVYMLPPEGYHKAKKGEVCLLRRSLYGLKQASRQWNLEF 1586
            R W +H +D+ NAFLHG L E VYM PP G  +  +  VC L +SLYGLKQASR W   F
Sbjct: 456  RNWFIHQLDVQNAFLHGDLHELVYMEPPPGLRRQGENVVCRLNKSLYGLKQASRNWFSTF 515

Query: 1587 SEKLLGFGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTI 1766
            SE +   G+ QS  D  LF K     + A++IYVDD+L+TG+    ++ LK +L + F I
Sbjct: 516  SEVIQKAGYQQSKADYSLFTKSQGTSFTAVLIYVDDILLTGNDLQEMKRLKEFLLKRFRI 575

Query: 1767 KDLGHAKYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQAST 1946
            KDLG+ KYFLG+E  RS +G  + QRKY +D+L+D+GL G +P   P  Q   +T     
Sbjct: 576  KDLGNLKYFLGIEFSRSKKGIFMSQRKYALDILQDSGLTGARPDKFPMEQNLKLTPTDGV 635

Query: 1947 PFADIGKFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISL 2126
               D  K+RRLVGRL+YL ++RPDI Y VQ LSQF+H P + HWD A+ +L+Y+KGT   
Sbjct: 636  VLNDPTKYRRLVGRLIYLTVTRPDIVYSVQTLSQFMHEPRKPHWDAALRVLRYIKGTPGQ 695

Query: 2127 GLFYPVGDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAE 2306
            GL +   +     A+CD+DWG C  TR+S+TG+C+F GNSL               AE+E
Sbjct: 696  GLLFSSTNDLTLKAFCDSDWGGCHATRRSVTGFCLFLGNSLISWKSKKQVVVSRSSAESE 755

Query: 2307 YRSMAATVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHI 2486
            YR+MA T  EL WL  +  DL++S + P PL CDN+AALHI ANPVFHERTKH++IDCHI
Sbjct: 756  YRAMANTCLELTWLRFILQDLKVSQNTPTPLFCDNQAALHIAANPVFHERTKHIEIDCHI 815

Query: 2487 VRNQFKAGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGMCSSTHIPT 2639
            VR + +AG I+P ++ T  Q AD+FTKALG   F T   KLG+    H PT
Sbjct: 816  VREKLQAGIINPSYVPTRFQLADVFTKALGKDQFVTLRSKLGL-HDIHSPT 865


>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  737 bits (1903), Expect = 0.0
 Identities = 392/877 (44%), Positives = 534/877 (60%), Gaps = 6/877 (0%)
 Frame = +3

Query: 3    KQCRLSFPLSTIHTEQAFELIHIDIWGPYLEPSVTNTSYMLTIVDDFTRGTWIYLMKHKS 182
            KQ +L F  S    ++ F+L+H+DIWGP    S+    + LTIVDD +R TW+Y MKHKS
Sbjct: 130  KQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHKFFLTIVDDKSRHTWVYFMKHKS 189

Query: 183  EIHLHISKFIALVQNQFQRSVKRVRSDNGAEFLSNQTQNLFAERGILHQRSCPYTPQQNG 362
            E+  H+S FI L++NQF + VK VRSDNG EFL    +N + E+GILHQ SC  TPQQNG
Sbjct: 190  EVADHLSSFITLIENQFGKKVKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETPQQNG 246

Query: 363  VVERKHRHILEIARALMFQSKLPKKFWPYTLLAAVHILNSLPSALLQWKSPFELLYKEPP 542
            +VERKH+HI+ +ARAL+ QS LPK FW Y +  AV ++N  PS+ L+ K P+E++Y   P
Sbjct: 247  IVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALP 306

Query: 543  KYDRFKVFGCLCFASKLGPQRGKFEPRASACIFLGYVTGIKGYRLYNLDTKEVFISRDVV 722
                 KVFGCL +A+ L   R KF+PR   C+FLG+   +KG  LY+L+++E F+SR V 
Sbjct: 307  DLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVE 366

Query: 723  FHESNFPFHNGN----SSAAEIPLPIQAIEFEEDAGEEVTHVSQKQQTDVQSPITDSEIT 890
            + E  FPF   +    +    +P     +  + D     T+      T   SP++     
Sbjct: 367  YFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNT-----TPTSSPVSVVPPP 421

Query: 891  DRLGRGHRVRHAPSWLQDYVTNTVHHGSTTLKIGGLKKPTTYDLDCFPFNYSPHMSSTYA 1070
              + +  R R  PS+L DY     HH   T           Y +     +YS ++S +  
Sbjct: 422  PFVRKSTRPRKLPSYLHDY-----HHTLLTTHNSPTISQPLYSIHNH-ISYS-NLSPSQK 474

Query: 1071 VFLSHISNSASEPTSYLEAAKDASWREAMNKELAALEENETWQLTSLPAGKKAIGSKWVY 1250
             F   IS S  EP SY+EA +D SW+ A+  EL ALE+N TW LT LP  K+ +G KWV+
Sbjct: 475  AFSLSIS-SIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVF 533

Query: 1251 KIKRNSDGTIDRYKARLVAKGYLQIEGVDFMESFSPVAKLVTVRMLVALATQRQWDLHHI 1430
            K+K NSDGTI+R+KARLVAKGY Q E +D++++FSPV K+ TVR L+A+AT + W +H +
Sbjct: 534  KLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQL 593

Query: 1431 DINNAFLHGYLDEEVYMLPPEGYHKA--KKGEVCLLRRSLYGLKQASRQWNLEFSEKLLG 1604
            D+N  FLHG L EEVYM PP G   +  +   VC L +SLYGLKQASRQWN + +  L+ 
Sbjct: 594  DVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLID 653

Query: 1605 FGFVQSTHDNCLFVKHDDGGYLALVIYVDDVLITGDSAALIQNLKTYLHELFTIKDLGHA 1784
             GF QS  D  LF K     + A+++YVDD+++ G+    I  +K+ L + FTIKDLG  
Sbjct: 654  SGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQL 713

Query: 1785 KYFLGLELMRSNQGTHLCQRKYIMDLLKDTGLMGCKPVSTPFPQGYNITAQASTPFADIG 1964
            KYFLG+E+ RS+ G  L QRKY +DL++DTGL+  KP  +P      +     TP  D  
Sbjct: 714  KYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPT 773

Query: 1965 KFRRLVGRLLYLNLSRPDISYGVQQLSQFVHAPTEAHWDVAIHLLKYLKGTISLGLFYPV 2144
            ++RRL+GRL+YL  +R DIS+ V  LSQF+  PT+ H+  A+ +LKY+K     GLF+P 
Sbjct: 774  QYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPS 833

Query: 2145 GDCPQFNAYCDADWGTCLLTRKSITGYCVFFGNSLXXXXXXXXXXXXXXXAEAEYRSMAA 2324
                    Y D+DW +C  TR+S+TG+  F G +L               AEAEYR++A 
Sbjct: 834  SSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQ 893

Query: 2325 TVCELKWLYNLGLDLQLSPSLPIPLHCDNKAALHITANPVFHERTKHLDIDCHIVRNQFK 2504
            + CE +WL  L  D  L    PI L CDN++ALHI +NPVFHERTK++++DCHIVR + +
Sbjct: 894  STCEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIVREKLQ 953

Query: 2505 AGFISPQHISTFLQPADLFTKALGGTAFRTFLLKLGM 2615
             G I    IST  Q AD+FTKAL    F   + KLGM
Sbjct: 954  VGLIHLLPISTADQLADVFTKALSLRPFEQIIFKLGM 990