BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00015097
         (2596 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY00469.1| retrovirus-related Pol polyprotein from transposo...   791   0.0  
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   811   0.0  
gb|PRQ55089.1| putative RNA-directed DNA polymerase [Rosa chinen...   790   0.0  
gb|PNX92270.1| retrovirus-related Pol polyprotein from transposo...   788   0.0  
gb|PNX74277.1| retrovirus-related Pol polyprotein from transposo...   769   0.0  
gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposo...   769   0.0  
gb|PNX93614.1| retrovirus-related Pol polyprotein from transposo...   786   0.0  
gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifo...   761   0.0  
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo...   779   0.0  
gb|KYP42321.1| Copia protein [Cajanus cajan]                          775   0.0  
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]   776   0.0  
dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subt...   772   0.0  
gb|PNY17451.1| retrovirus-related Pol polyprotein from transposo...   768   0.0  
gb|PNY16454.1| flavonol sulfotransferase-like protein [Trifolium...   768   0.0  
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo...   763   0.0  
gb|OMO88956.1| Integrase, catalytic core [Corchorus capsularis]       763   0.0  
gb|PNX97998.1| retrovirus-related Pol polyprotein from transposo...   747   0.0  
dbj|GAU41679.1| hypothetical protein TSUD_272630 [Trifolium subt...   753   0.0  
gb|PNX93131.1| retrovirus-related Pol polyprotein from transposo...   746   0.0  
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo...   755   0.0  

>gb|PNY00469.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 778

 Score =  791 bits (2044), Expect = 0.0
 Identities = 410/787 (52%), Positives = 529/787 (67%), Gaps = 23/787 (2%)
 Frame = +1

Query: 271  WDHCILTAAHIINRLPAPILHNKTPFEILFNKMPDYSHFKIFGCLAYVSTLTAQRHKFQA 450
            W+ C+  A H+INR+P+P+L +KTP+E+LF   P   H K+FGCL++ +TL A R KF +
Sbjct: 2    WNFCVQHAVHVINRIPSPLLKSKTPYELLFKLSPTLLHLKVFGCLSFATTLQAHRTKFDS 61

Query: 451  RASKCVFIGYPLGSKGYKLYDLESHKVLISRHVIFCENIFPFQEIASKSVSPEAPLFPIS 630
            RA KCVFIGY  G+KGY LYDL SH + +SR+V+F E++ PF+ +   + S  +P FP+ 
Sbjct: 62   RARKCVFIGYKDGTKGYILYDLHSHNIFLSRNVVFYEHVLPFKSVPGPTSSHNSPTFPLY 121

Query: 631  D--LSSAQDQSFSHFQNINAQNDIVTTTQII--------------------SDAQNDFAD 744
            D  L  + +     F       D V+    +                    + A   F D
Sbjct: 122  DDPLDISHNPCVDTFPLSTGSLDNVSLNPALTPPLVPTLDSSPLTPPINTATPAPPSF-D 180

Query: 745  AQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQH 924
            + H  A Q +  + + PV S  E S P P   R S+R    PSYLQ Y C I     +Q 
Sbjct: 181  SAHSAADQPSPNLDSVPVPS--EPSIPLP--TRVSTRVTRPPSYLQDYHCNIKSGCTNQV 236

Query: 925  SAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIR 1104
            S+  +     +P+   LS +  S  +K F   IS   EP +Y QASK   W+ AM AEI 
Sbjct: 237  SSNIV-----HPLSSVLSYNTCSPAYKLFCCSISSTIEPTTYNQASKFDCWKKAMDAEIT 291

Query: 1105 ALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTF 1284
            ALE N+TW + DLP  K  IGCKWVYK+KY +NG+IERYKARLVAKGYTQ EG+DYFDTF
Sbjct: 292  ALELNKTWTVVDLPCGKVPIGCKWVYKIKYHANGTIERYKARLVAKGYTQMEGVDYFDTF 351

Query: 1285 SPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKL 1464
            SPVAK+TTVR+L+A+AA +GW L QLDVNNAFLHGDLHEEVYM  PPGY  +   KVCKL
Sbjct: 352  SPVAKMTTVRVLLAVAAVRGWHLEQLDVNNAFLHGDLHEEVYMSLPPGY-DATPSKVCKL 410

Query: 1465 TKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGN 1644
             KSLYGLKQASRQW+ KL++ L++ G+  S++D SL+  SH  S T L VYVDDI+LAG 
Sbjct: 411  NKSLYGLKQASRQWYSKLSAALISLGYQASQADHSLYVKSHGTSFTALLVYVDDIVLAGT 470

Query: 1645 DISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLLTETGFLGSK 1824
             I +I+++KL LD++F IKDLG L++ LG+E+ARS+ GI + QRKY L+LL +TGFLGSK
Sbjct: 471  SIEEIKSVKLFLDQQFKIKDLGPLRFFLGLEIARSSSGIFLNQRKYTLELLEDTGFLGSK 530

Query: 1825 PSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLSQYLSKPTTT 2004
            P+T P+D   + S+ D  P  D S YRRLIGR+LYLT TRP++SF++Q LSQY+S P   
Sbjct: 531  PATVPLDPHTKLSATDGVPFDDPSGYRRLIGRLLYLTHTRPDISFAVQHLSQYVSTPLVP 590

Query: 2005 HLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGFAVFLGDSLI 2184
            H  AA RI RY+KS P KG+ +SS SPL L  F+D+DWA C  TRRS++G+ V LG SLI
Sbjct: 591  HYQAATRILRYLKSCPAKGVLFSSHSPLQLHGFADSDWACCPNTRRSVTGYCVLLGSSLI 650

Query: 2185 SWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHPQSL-MYTDSRSAYCIS 2361
            SWKSKKQ T+SRSS EAEYRA+A  TCE+QWL YL QD+HI  PQS  +Y D++SA  ++
Sbjct: 651  SWKSKKQNTVSRSSTEAEYRALASLTCELQWLQYLFQDLHITFPQSASVYCDNKSAIYLA 710

Query: 2362 QNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPAQFNYLISKLS 2541
             N   HER+KHI+LDCH +REKLQ  L  L+ +PS  Q AD+FTKPL    F+ ++SKL 
Sbjct: 711  HNPTFHERSKHIELDCHIIREKLQSKLIHLLSVPSKSQLADVFTKPLHSPAFSSMLSKLG 770

Query: 2542 MLNIHAP 2562
            + +IH P
Sbjct: 771  LCSIHHP 777


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  811 bits (2094), Expect = 0.0
 Identities = 420/801 (52%), Positives = 543/801 (67%), Gaps = 6/801 (0%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKHQHLL V  ALLF SK+P  FW + +L A ++INR+  P+L NKTPF+ L+ + 
Sbjct: 601  GVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLINRITTPLLDNKTPFQKLYGQT 660

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
             D +  ++FGCL YVST TA R K   RA  CVF+G+   +KGY  YDL +  + ISR+V
Sbjct: 661  CDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNV 720

Query: 550  IFCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIISDAQ 729
             F EN FP  +  S S S    + PIS            F   +  +D+++   I+ D  
Sbjct: 721  SFYENHFPLLQSTS-STSNIPVVSPIS------------FGIHSPSHDLIS---ILPDPH 764

Query: 730  NDFADAQHDLAAQNTTVVQTD-----PVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDC 894
                  QH++ + N      D     P ++  +   PN   LRRS+R R  PSYLQ Y  
Sbjct: 765  ------QHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPLRRSTRLRNPPSYLQDYHH 818

Query: 895  KIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKE 1074
             +  +  + H       G  YPI+ ++S  +LSN  +AF + IS ++EP SYA+A+K   
Sbjct: 819  SLTSTSTNLHP------GMLYPIEKYISYSRLSNDFQAFVSSISAVSEPHSYAEAAKHDC 872

Query: 1075 WQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQ 1254
            W  AM AE+ AL+ NQTW +T LP  K  +GC+W+YK+KY ++GSIERYKARLVAKGYTQ
Sbjct: 873  WLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIERYKARLVAKGYTQ 932

Query: 1255 EEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYL 1434
             EGLDY  TFSPVAK+TTVRLL+ALAA   W L QLDVNNAFLHGDL+EEVYM  P G  
Sbjct: 933  VEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMR 992

Query: 1435 QSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCV 1614
                 +VCKL KSLYGLKQASRQWF KL+S L+++G+ QS SD SLF      S T L +
Sbjct: 993  PEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSSSSTTALLI 1052

Query: 1615 YVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDL 1794
            YVDDI+LAGN++S+I+ I   LD  F IKDLG LKY LG+EVAR+  GIH+ QRKY LD+
Sbjct: 1053 YVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDI 1112

Query: 1795 LTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTL 1974
            L++ G + S+P +TPMD  ++ S++  +PL D S YRRL+GR++YLT TRP++S+ +  L
Sbjct: 1113 LSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLTTTRPDISYVVHHL 1172

Query: 1975 SQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISG 2154
            SQ++S P+T H  A  RI RY+K  P  GLF+ + S LHLK FSD+DWA C +TRRSI+G
Sbjct: 1173 SQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITG 1232

Query: 2155 FAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIK-HPQSLMY 2331
            F+V+LGDSLISW+SKKQPT+SRSS+EAEYRA+A TT E+QWLTYLL D+H+  H  +L+Y
Sbjct: 1233 FSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLHDLHVPVHQPALLY 1292

Query: 2332 TDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPA 2511
             D++SA  I+ N   HERTKHI +DCH VREKLQ GL KL+ + S  Q ADIFTK L P+
Sbjct: 1293 CDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPHQLADIFTKSLSPS 1352

Query: 2512 QFNYLISKLSMLNIHAPLEGG 2574
             F  L SKL MLN+++ LEGG
Sbjct: 1353 MFTALYSKLGMLNLYSQLEGG 1373


>gb|PRQ55089.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1285

 Score =  790 bits (2040), Expect = 0.0
 Identities = 408/815 (50%), Positives = 552/815 (67%), Gaps = 21/815 (2%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+ ERKH+HLL +ARALLFQ+ +P  FW   ILTAA++INR P PIL  KTPFE LF+K 
Sbjct: 468  GVAERKHRHLLNMARALLFQANLPKPFWGDAILTAAYLINRTPTPILQGKTPFEKLFHKE 527

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P YSH ++FGC  +VST   +  KF  R+ +CVF+GYP G KGYK+Y+L + K L+SR V
Sbjct: 528  PSYSHLRVFGCQCFVSTHPTRPSKFDPRSMECVFLGYPHGQKGYKVYNLTTKKSLVSRDV 587

Query: 550  IFCENIFPFQEIASKSVSPEAPLFP-ISDLSSAQDQSFSHFQNINAQNDIVTTTQIISDA 726
            IF EN FPF + +    S    LFP I  L+   + S      I   +    +  +IS  
Sbjct: 588  IFFENAFPFPKNSESFPSQNTDLFPSIPRLAHYDNPSIP---KIPPSSPTHHSPPMISP- 643

Query: 727  QNDFADAQHDLAAQNTTVVQTDPVNS-------------HIEHSNP---NPPILRRSSRN 858
             N  + A+  L + + ++  TDPV+S             HI   +P    PP  R+S+R 
Sbjct: 644  -NPQSSAEQYLNSPSKSLSSTDPVSSDITLPNLDTISSDHIPSLSPPEQTPPRPRKSTRA 702

Query: 859  RTNPSYLQVY--DCKIPPSIQSQHSAQTIIS-GKQYPIQDFLSVDKLSNKHKAFSAQISQ 1029
               P+ LQ +  D  +P  +    S+  + + G  + +   LS   LS+ H+ F+A I+ 
Sbjct: 703  TKLPTALQDFHIDAALPTRLAPSSSSNEVTTPGTAHSLSHVLSYANLSSPHRTFTANITL 762

Query: 1030 ITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGS 1209
              EP S++QA K  +W++AM+ E++AL+ N+TW +   PA K  IGCKWVYK+KY  +G+
Sbjct: 763  QREPTSFSQAVKDPKWREAMRLEVQALQDNKTWSLVPPPAHKRPIGCKWVYKIKYNPDGT 822

Query: 1210 IERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHG 1389
            IERYKARLVAKGY+Q EGLDY +TF+PVAK+TTVR+L++LAA + W LHQLDVNNAFL+G
Sbjct: 823  IERYKARLVAKGYSQVEGLDYRETFAPVAKLTTVRVLLSLAAQQNWHLHQLDVNNAFLNG 882

Query: 1390 DLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSS 1569
            DLHE+VYM  PPG+ +  + KVCKL KSLYGL+QAS+QWF KL+S L + GF QS SD S
Sbjct: 883  DLHEDVYMHLPPGFERKGEHKVCKLHKSLYGLRQASKQWFLKLSSALKSAGFKQSWSDYS 942

Query: 1570 LFTMSHDDSITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARS 1749
            +F  SH  + T L VYVDD+ILAGN++  I   K  L   F +KD+G LKY LG+EVARS
Sbjct: 943  MFVRSHQGTFTALLVYVDDVILAGNNLDDIIRTKSFLSSHFKLKDMGQLKYFLGLEVARS 1002

Query: 1750 TKGIHICQRKYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLY 1929
              GI + QRKYAL++L +TGFLG+KPS  P++     +  D   L DASQYRRL+GR++Y
Sbjct: 1003 KHGIALSQRKYALEILEDTGFLGAKPSRFPLEQNIILTQEDGRLLEDASQYRRLVGRLIY 1062

Query: 1930 LTITRPELSFSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSD 2109
             TITRP+L +++  LSQ++ KP   HL AAH++ RY+K TP +G+F  S  PL L  + D
Sbjct: 1063 QTITRPDLVYAVHILSQFMDKPRQPHLDAAHKVLRYLKQTPGQGIFLPSKGPLELSAYCD 1122

Query: 2110 ADWARCQETRRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYL 2289
            ADWARC++TRRS +G+ +FLG + ISWK+KKQ T+SRSSAEAEYR++A T CEI WL Y+
Sbjct: 1123 ADWARCKDTRRSTTGYCIFLGHAPISWKTKKQRTVSRSSAEAEYRSMATTCCEITWLQYI 1182

Query: 2290 LQDMHIKHPQSL-MYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPS 2466
            L+D++I+H Q + ++ D+++A  I+ N   HERTKHI++DCH VREK+Q GL +  HI +
Sbjct: 1183 LKDLNIQHLQPVKLFCDNKAAIHIASNPVFHERTKHIEIDCHVVREKVQRGLIQTEHIRT 1242

Query: 2467 TQQTADIFTKPLPPAQFNYLISKLSMLNIHAPLEG 2571
             +Q ADIFTKPL   QF+ L+ KL ++NIH+ L G
Sbjct: 1243 KEQPADIFTKPLSSEQFSLLLGKLGVINIHSNLRG 1277


>gb|PNX92270.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1246

 Score =  788 bits (2034), Expect = 0.0
 Identities = 404/810 (49%), Positives = 544/810 (67%), Gaps = 12/810 (1%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKH+HLL VARALLFQ+ +P +FW   ILTAA++INR   PILH KTPFEILF+K 
Sbjct: 437  GVVERKHRHLLNVARALLFQANLPKTFWGDSILTAAYLINRTSTPILHGKTPFEILFHKP 496

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P Y H ++FGCL + S    +  KF  R+ +C+F+GYP G+KGY++YDL + K   SR V
Sbjct: 497  PTYHHLRVFGCLCFASNHHHKPTKFDTRSIRCIFLGYPYGTKGYRVYDLATGKTFTSRDV 556

Query: 550  IFCENIFPFQEIASKSV--SPEAPLFPISDLSSAQDQSFSHF--QNINAQNDIVTTTQII 717
            IF E+IFP+   A+ S   + + PL  I    S+  ++   F      A +D   T  I+
Sbjct: 557  IFHEHIFPYSSAATMSTPSTHQIPLPNIEPFDSSSHETTPSFPTHTPTAFDDQQPTPPIV 616

Query: 718  SDAQNDFADAQHDLAAQNTTVVQTDPVNSHI----EHSNPNPPILRRSSRNRTNPSYLQV 885
            +       ++Q  +     + ++    +S      E  +  PP    + R    PSYL+ 
Sbjct: 617  TPT----IESQDTIIPTIVSTIEASTSDSTTITPPEAPHDIPPPALMAKRLIRPPSYLRQ 672

Query: 886  YDCKIP---PSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQ 1056
            Y  ++     S  S HS  T   G  +P+   L+ D+LS  H+AF+  IS I EP S+ Q
Sbjct: 673  YHVEVSLPTRSSPSSHSVLTAPKGIPHPLSSVLNYDRLSPAHRAFTTSISAIKEPTSFHQ 732

Query: 1057 ASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLV 1236
            A K  +W+ AM  E+RAL  N TW +  LP +K+ +GCKWVYK+K+  +G+IERYKARLV
Sbjct: 733  AVKDPKWRFAMDEELRALHDNGTWSLQHLPPNKNPVGCKWVYKIKFNPDGTIERYKARLV 792

Query: 1237 AKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYML 1416
            AKGY+Q EG DY +TF+PVAK+ TVRLL+A+A++  W L QLDVNNAFLHGDL EEVYM 
Sbjct: 793  AKGYSQIEGFDYRETFAPVAKLVTVRLLLAVASSMNWHLRQLDVNNAFLHGDLEEEVYMS 852

Query: 1417 PPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDS 1596
             PPGY +  + +VCKL KSLYGLKQASRQWF KL+  L+   + QSKSD SLF    D S
Sbjct: 853  LPPGYGRKGETRVCKLHKSLYGLKQASRQWFIKLSKVLILADYTQSKSDHSLFVRHRDTS 912

Query: 1597 ITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQR 1776
             T L +YVDDIILAGN++ +IE IK HL E+F +KDLG LKY LGIEV+RS +GI + QR
Sbjct: 913  FTALLIYVDDIILAGNNLQEIERIKAHLMEQFKLKDLGNLKYFLGIEVSRSKQGITLSQR 972

Query: 1777 KYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELS 1956
            KYAL++L + G+L  KP+ +PM+     +  D   + + S YRRL+GR++YLTITRP+L 
Sbjct: 973  KYALEILEDMGYLAVKPANSPMEQNLSLNKTDGDCIDEPSSYRRLVGRLIYLTITRPDLV 1032

Query: 1957 FSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQET 2136
            +++  LSQ++ KP   HL AA R+ RYIK TP +G+ + STS L L  F DADWARCQ+T
Sbjct: 1033 YAVHILSQFMDKPRIPHLEAAQRVLRYIKKTPGQGILFPSTSTLQLNAFCDADWARCQDT 1092

Query: 2137 RRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHP 2316
            RRS SG+ VF+G+SLISWK+KKQ T+SRSSAEAEYR++A   CE+ WL  +L D+ I+H 
Sbjct: 1093 RRSTSGYCVFIGNSLISWKTKKQVTVSRSSAEAEYRSMASVCCEVTWLLSVLHDLGIEHQ 1152

Query: 2317 QSL-MYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFT 2493
            Q + ++ D+++A  I+ N   HERTKHI++DCH VREK+Q G+ K  HI +++Q AD+FT
Sbjct: 1153 QPVKLFCDNQAALHIASNPVFHERTKHIEIDCHLVREKVQAGVVKTYHISTSEQPADVFT 1212

Query: 2494 KPLPPAQFNYLISKLSMLNIHAPLEGGCKD 2583
            K L   QF+ LI+KL M+NI++ L G  K+
Sbjct: 1213 KALSVPQFSNLINKLGMINIYSNLRGSVKN 1242


>gb|PNX74277.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 762

 Score =  769 bits (1985), Expect = 0.0
 Identities = 407/780 (52%), Positives = 520/780 (66%), Gaps = 16/780 (2%)
 Frame = +1

Query: 271  WDHCILTAAHIINRLPAPILHNKTPFEILFNKMPDYSHFKIFGCLAYVSTLTAQRHKFQA 450
            W+  +  A HIINRLP+P+L+ K P+E+L+ K P   H K+FGCL+Y +TL A R KF +
Sbjct: 2    WNFSVQHAVHIINRLPSPLLNLKCPYELLYKKPPSLVHLKVFGCLSYATTLQAHRTKFDS 61

Query: 451  RASKCVFIGYPLGSKGYKLYDLESHKVLISRHVIFCENIFPFQEIASKSVSPEAPLFPIS 630
            RA K +F+G+  G+KGY LYDL SH + +SR+V+F E  FP +           P+   S
Sbjct: 62   RARKAIFLGFKDGTKGYILYDLSSHDIFVSRNVVFYETYFPLRH--------SQPVHNAS 113

Query: 631  DLS------SAQDQSFSHFQNINAQNDIVTTTQIISDAQNDFA-DAQHDLAAQNTTVVQT 789
            D S      S  D   SH       N +        D+ +  + + + D    +      
Sbjct: 114  DFSKPLPSNSILDDPVSH-----THNSLPLPVMFEPDSTSPSSVNIEPDRTISSPASSSH 168

Query: 790  DPVNSHIEHSNPN---PPI---LRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGK 951
             P++S   H  PN   PP    LRRS+R  T P YL+ Y C          S    IS  
Sbjct: 169  TPLSSS-SHDRPNLAPPPYHDNLRRSTRTITRPGYLEDYHC-----YSVTGSVNNNISHP 222

Query: 952  QYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWI 1131
             YP+   LS D    ++K+F   IS I EPK+++QASK   W+ AM AE+ AL++N+TW 
Sbjct: 223  NYPLSSVLSYDNCVPEYKSFCCSISAIIEPKTFSQASKLDCWRKAMDAELLALDENKTWS 282

Query: 1132 MTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTV 1311
            + DLP  K  IGCKWVYK+KY +NGSIERYKARLVAKGYTQ EG+DYFDTFSPVAKITTV
Sbjct: 283  VVDLPHGKTPIGCKWVYKIKYHANGSIERYKARLVAKGYTQMEGIDYFDTFSPVAKITTV 342

Query: 1312 RLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQS-NDKKVCKLTKSLYGLK 1488
            R L+ALA+ KGW L QLDVNNAFLHGDL+EEVYM  PPGY  +    KVC+L KSLYGLK
Sbjct: 343  RFLLALASIKGWDLEQLDVNNAFLHGDLNEEVYMSLPPGYSSAIGSNKVCRLHKSLYGLK 402

Query: 1489 QASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNDISKIEAI 1668
            QASRQW+ KL+S L+++G+ QS SD SL+  S D   T L VYVDDI+LAGN   +I+A+
Sbjct: 403  QASRQWYSKLSSALISFGYKQSVSDHSLYIKSTDSEFTALLVYVDDIVLAGNSSKEIQAV 462

Query: 1669 KLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLLTETGFLGSKPSTTPMDC 1848
            K  LD+KF IKDLG L+Y LG E+ARS KGI + QRKY L+LL +TGFL +KPS  P + 
Sbjct: 463  KHFLDQKFKIKDLGKLRYFLGFEIARSPKGIFVNQRKYTLELLQDTGFLATKPSNIPFNP 522

Query: 1849 KAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLSQYLSKPTTTHLAAAHRI 2028
              + SS D +PL D S YRRLIGR+LYLT TRP++SFS+Q LSQ++SKP   H  AA RI
Sbjct: 523  TTKLSSTDGAPLKDPSSYRRLIGRLLYLTNTRPDISFSVQHLSQFVSKPLIPHYTAATRI 582

Query: 2029 *RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGFAVFLGDSLISWKSKKQP 2208
             +Y+KS P  GLF+  +S L L  ++D+DWARC +TR+SI+G+ VF+G SLISWKSKKQ 
Sbjct: 583  LKYLKSAPANGLFFPVSSSLKLTGYADSDWARCPDTRKSITGYCVFIGSSLISWKSKKQN 642

Query: 2209 TISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIK--HPQSLMYTDSRSAYCISQNSCHHE 2382
            T+SRSS EAEYRA+A  TCEIQWL YL QD  +K  +P S ++ DSRSA  ++ N   HE
Sbjct: 643  TVSRSSTEAEYRALASLTCEIQWLQYLFQDFKMKFSNPAS-VFCDSRSAIYLAHNPAFHE 701

Query: 2383 RTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPAQFNYLISKLSMLNIHAP 2562
            R+KHI++DCH +REK+Q  L  L+ IPS  Q AD+FTKPL    F  L+SKL++ +IH+P
Sbjct: 702  RSKHIEIDCHVIREKIQSQLIHLLPIPSNSQIADMFTKPLHFPAFFDLLSKLNLCSIHSP 761


>gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 810

 Score =  769 bits (1985), Expect = 0.0
 Identities = 403/793 (50%), Positives = 526/793 (66%), Gaps = 2/793 (0%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            GIVERKHQH+L V R+LLFQSKVP SFW   I  A HIINRLP P L+NK+PFE++FN+ 
Sbjct: 62   GIVERKHQHILNVCRSLLFQSKVPKSFWSFAIKHAVHIINRLPTPFLNNKSPFEMIFNQK 121

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P+    K FGCLAYVSTL+  R+K + RA KC+F+G+  G+KG+ L++L S  +L+SRH 
Sbjct: 122  PNLHDLKTFGCLAYVSTLSGGRNKLEPRAHKCIFLGFKTGTKGFVLFNLHSKSILLSRHA 181

Query: 550  IFCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTT-QIISDA 726
            IF + +FP+  +     +    + PIS+     D  F  +    + +D +T     I +A
Sbjct: 182  IFHQTVFPYINVFDNQSNSN--IVPISN-----DNIFQPYDFFPSYSDHLTNNPNSIENA 234

Query: 727  QNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPP 906
             N+F +   D   + +  +        IE     P   R S R+++ P YL  Y C    
Sbjct: 235  SNNFENHTQDPPIEMSQSIP-------IETGQIQPITTRVSLRSKSRPGYLDQYHCYNTV 287

Query: 907  SIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDA 1086
            S  S        S   YP+  ++                        + +AS +  W+ A
Sbjct: 288  SSDST-------SNSLYPMHLYI------------------------FKEASTKDCWKQA 316

Query: 1087 MKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGL 1266
            M AE+ ALE+N+TW +  LP  K  IGCKWVY+ K+++NG++ERYKARLVAKG+TQ EG+
Sbjct: 317  MIAELDALERNRTWSLVTLPPGKKLIGCKWVYRTKHKANGTVERYKARLVAKGFTQTEGI 376

Query: 1267 DYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSND 1446
            DYF+TFSPVAKIT++R L+ALA++  WF+HQLD++NAFLHGDL EEVYM PP G    + 
Sbjct: 377  DYFETFSPVAKITSIRFLLALASSHNWFIHQLDIDNAFLHGDLDEEVYMRPPQGLRLPSS 436

Query: 1447 KKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDD 1626
            K VCKL KSLYGLKQASR W QKLTS L   G+ QS +D SLF      SITIL +YVDD
Sbjct: 437  KLVCKLEKSLYGLKQASRNWNQKLTSELTLMGYKQSFADHSLFVNFTGSSITILLIYVDD 496

Query: 1627 IILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLLTET 1806
            I+L+GND+++I+ +K HL  KF IKDLG+LK+ LG+EVARS KGI + QRKY L+L+ ET
Sbjct: 497  IVLSGNDMTEIKKVKAHLHNKFHIKDLGSLKFFLGLEVARSKKGILLNQRKYCLELIDET 556

Query: 1807 GFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLSQYL 1986
            G LG KP+ TP D   +   +    L D + +RRLIGR+LYLT TRP++SFS+Q LSQ++
Sbjct: 557  GLLGCKPAPTPADPAMKLHVDHGDLLHDPTVFRRLIGRLLYLTNTRPDISFSVQQLSQFV 616

Query: 1987 SKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGFAVF 2166
            SKP   H+ AA RI RY+K  P  GLFYSST+PL ++ FSD+DWA C  TRRS++G+ VF
Sbjct: 617  SKPREPHMQAALRIVRYLKGAPGLGLFYSSTNPLKIQAFSDSDWATCATTRRSVTGYCVF 676

Query: 2167 LGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHPQSL-MYTDSR 2343
            +G+SLISWKSKKQ T+SRSS+EAEYRA+A  TCE+QWL YL   MHIK P     ++DS+
Sbjct: 677  IGNSLISWKSKKQSTVSRSSSEAEYRALASLTCELQWLKYLCDSMHIKIPTPFATFSDSQ 736

Query: 2344 SAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPAQFNY 2523
            SA  IS+N   HERTKHI++DCH +R K+QEGL  LIH+ S  Q AD FTK L P  F+ 
Sbjct: 737  SAIQISKNPTFHERTKHIEVDCHLIRIKIQEGLLHLIHVLSANQLADAFTKALFPKPFHT 796

Query: 2524 LISKLSMLNIHAP 2562
             ISKL +LNI+ P
Sbjct: 797  AISKLGLLNIYHP 809


>gb|PNX93614.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1430

 Score =  786 bits (2030), Expect = 0.0
 Identities = 411/804 (51%), Positives = 543/804 (67%), Gaps = 9/804 (1%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            GIVERKHQH+L VARAL FQ+ +P +FW   IL + H+INRLP P L +K+P+E+LF + 
Sbjct: 643  GIVERKHQHILNVARALSFQAFLPSNFWHLSILHSVHLINRLPTPFLQHKSPYEVLFQQP 702

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P   H + FGCLA+ STL   R KF  RA K VF+GY  G+KG+ LYD+ +H  L+SR+V
Sbjct: 703  PTLLHLRTFGCLAFASTLHNHRTKFMPRARKTVFLGYRDGTKGFLLYDISNHSFLVSRNV 762

Query: 550  IFCENIFPFQEIASKSVSPEAPL----FPISDLSSAQDQSFSHFQNINAQNDIVTTTQII 717
            IF E++FP   + S   S    L     PI   +           +  A   + T T  +
Sbjct: 763  IFYEDVFPLSSVNSSHTSSTTTLDNFVLPIDPPNFPS--------SCPAPLSVSTGTNPL 814

Query: 718  SDAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCK 897
            +D   + A    +  + +  V    P NS I      P   R S+R R  P YLQ + C 
Sbjct: 815  TDHAENSATLVDNQVSNSPAV---PPQNSSI------PAPTRVSNRIRKIPGYLQDFHCS 865

Query: 898  IPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEW 1077
            + PS   QH + +  +   YPI   LS    +  +K F   IS   EPK++ QA K   W
Sbjct: 866  LLPS---QHQSSSSNAFSTYPISSSLSYTNCATAYKHFCLSISTTIEPKTFKQACKSDCW 922

Query: 1078 QDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQE 1257
            ++AMK+E+ ALE N+TW + DLP  K+ IGCKWVYK+K+ ++GSIERYKARLVAKGYTQ 
Sbjct: 923  KEAMKSELAALELNRTWSIVDLPTGKNPIGCKWVYKIKHNADGSIERYKARLVAKGYTQM 982

Query: 1258 EGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQ 1437
            EG+DYFDTFSPVAK+TTV+ L+ALA+ KGWFL QLDVNNAFLHGDL+EEVYM  PPG + 
Sbjct: 983  EGVDYFDTFSPVAKLTTVKTLLALASIKGWFLEQLDVNNAFLHGDLNEEVYMSLPPGVII 1042

Query: 1438 ----SNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITI 1605
                SN  KVC+L KSLYGLKQASRQW+ KL+S LL+ G+ QS +D SLF      S T 
Sbjct: 1043 PNSCSNTPKVCRLHKSLYGLKQASRQWYSKLSSALLSLGYSQSAADHSLFLKKVGSSFTA 1102

Query: 1606 LCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYA 1785
            L VYVDDI+LAGN+  +I ++K  LD++F IKDLG L++ +G+E+ARS KGI + QRKY 
Sbjct: 1103 LLVYVDDIVLAGNNSLEITSVKSFLDKRFQIKDLGNLRFFVGLEIARSKKGILLNQRKYT 1162

Query: 1786 LDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSI 1965
            L+LL ++G L +KPS+TP D   +   ++S P  D S YRRLIGR+LYLT TRP+++F++
Sbjct: 1163 LELLQDSGNLAAKPSSTPYDPSLKLHDSESPPYNDPSGYRRLIGRLLYLTTTRPDITFAV 1222

Query: 1966 QTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRS 2145
            Q LSQ++S P   H  AA ++ RY+K++P KGLF+SS+S L L  FSD+DWA C  TR+S
Sbjct: 1223 QQLSQFVSSPREVHFQAATKVLRYLKASPAKGLFFSSSSSLKLSGFSDSDWATCAITRKS 1282

Query: 2146 ISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIK-HPQS 2322
            I+G+ VFLG SLISWKSKKQ T+SRSS+EAEYRA+A  +CE+QWL YL +D+ IK    +
Sbjct: 1283 ITGYCVFLGTSLISWKSKKQSTVSRSSSEAEYRALASLSCELQWLHYLFKDLGIKFDAPA 1342

Query: 2323 LMYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPL 2502
            ++Y D++SA  ++ N   HERTKHI++DCH VRE++Q GL  L+ +PS+ Q AD+ TK L
Sbjct: 1343 MVYCDNKSAIYLAHNPSFHERTKHIEIDCHVVRERIQSGLIHLLPVPSSSQLADVLTKQL 1402

Query: 2503 PPAQFNYLISKLSMLNIHAPLEGG 2574
              + F  LISKL +L+IH+P  GG
Sbjct: 1403 SSSAFASLISKLGLLDIHSPACGG 1426


>gb|PNX93928.1| hypothetical protein L195_g017092, partial [Trifolium pratense]
          Length = 865

 Score =  761 bits (1964), Expect = 0.0
 Identities = 388/795 (48%), Positives = 533/795 (67%), Gaps = 4/795 (0%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKH+H+L VARALLF S +PL FW  C+LTA ++INRLP+P+L NK+PFE+L+NK 
Sbjct: 83   GVVERKHRHILVVARALLFHSHLPLEFWGECVLTAVYLINRLPSPLLSNKSPFELLYNKP 142

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P   H ++FGCL Y +T+    HKF  RA + +F+GYP G KGYK+YD E+    +SR V
Sbjct: 143  PSLDHLRVFGCLCY-ATIVHPTHKFDPRAKRGIFVGYPTGQKGYKIYDPETKTFFVSRDV 201

Query: 550  IFCENIFPFQEIASKS--VSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIISD 723
             FCE  FP     S+   +S       I DL S      SH Q+   Q DI +T +    
Sbjct: 202  KFCETNFPSIPNTSEPNLISSHPSYEAIDDLPSPTS---SHHQS--QQTDIPSTHE---- 252

Query: 724  AQNDFADAQHDLAAQNTTVVQTDPVNSHI-EHSNPNPPILRRSSRNRTNPSYLQVYDCKI 900
              N  +    + ++  + +V+  P+ +H  +   P  P +R+S R++  P +   Y   +
Sbjct: 253  -PNSPSHITTETSSAASPIVEPTPLTTHTTDPPTPFIPQVRKSVRDKHPPIWHNDYH--M 309

Query: 901  PPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQ 1080
               +    S  T  SG +YP+  +LS  ++S+ + AF A I+   EP+SY QA     WQ
Sbjct: 310  STQVNKTPSEPTSGSGTRYPLSHYLSYSRISSSNCAFLANITAHREPQSYDQAVHDPLWQ 369

Query: 1081 DAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEE 1260
            DAM AE+ ALE+N TW +  LP+    IGCKWVYK+KY+S+G+IERYKARLVAKGYTQ E
Sbjct: 370  DAMNAELEALEQNNTWSLVPLPSGHKPIGCKWVYKIKYKSDGTIERYKARLVAKGYTQVE 429

Query: 1261 GLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQS 1440
            G+DY +TFSP AK+TT+R L+ +AAA+ WF+HQLDV NAFLHGDLHE VYM PPPG  + 
Sbjct: 430  GIDYQETFSPTAKVTTLRCLLTVAAARNWFIHQLDVQNAFLHGDLHELVYMEPPPGLRRQ 489

Query: 1441 NDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYV 1620
             +  VC+L KSLYGLKQASR WF   +  +   G+ QSK+D SLFT S   S T + +YV
Sbjct: 490  GENVVCRLNKSLYGLKQASRNWFSTFSEVIQKAGYQQSKADYSLFTKSQGTSFTAVLIYV 549

Query: 1621 DDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLLT 1800
            DDI+L GND+ +++ +K  L ++F IKDLG LKY LGIE +RS KGI + QRKYALD+L 
Sbjct: 550  DDILLTGNDLQEMKRLKEFLLKRFRIKDLGNLKYFLGIEFSRSKKGIFMSQRKYALDILQ 609

Query: 1801 ETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLSQ 1980
            ++G  G++P   PM+   + +  D   L D ++YRRL+GR++YLT+TRP++ +S+QTLSQ
Sbjct: 610  DSGLTGARPDKFPMEQNLKLTPTDGVVLNDPTKYRRLVGRLIYLTVTRPDIVYSVQTLSQ 669

Query: 1981 YLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGFA 2160
            ++ +P   H  AA R+ RYIK TP +GL +SST+ L LK F D+DW  C  TRRS++GF 
Sbjct: 670  FMHEPRKPHWDAALRVLRYIKGTPGQGLLFSSTNDLTLKAFCDSDWGGCHATRRSVTGFC 729

Query: 2161 VFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHI-KHPQSLMYTD 2337
            +FLG+SLISWKSKKQ  +SRSSAE+EYRA+A T  E+ WL ++LQD+ + ++  + ++ D
Sbjct: 730  LFLGNSLISWKSKKQVVVSRSSAESEYRAMANTCLELTWLRFILQDLKVSQNTPTPLFCD 789

Query: 2338 SRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPAQF 2517
            +++A  I+ N   HERTKHI++DCH VREKLQ G+    ++P+  Q AD+FTK L   QF
Sbjct: 790  NQAALHIAANPVFHERTKHIEIDCHIVREKLQAGIINPSYVPTRFQLADVFTKALGKDQF 849

Query: 2518 NYLISKLSMLNIHAP 2562
              L SKL + +IH+P
Sbjct: 850  VTLRSKLGLHDIHSP 864


>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1445

 Score =  779 bits (2011), Expect = 0.0
 Identities = 404/799 (50%), Positives = 528/799 (66%), Gaps = 8/799 (1%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            GIVERKHQHLL V RALLFQS++P +FW + I  A HIINRLP   L  K+PFE++++  
Sbjct: 691  GIVERKHQHLLNVCRALLFQSQIPKTFWSYAIKHAVHIINRLPTRFLKQKSPFEMIYHHK 750

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD    ++FGCLAY STL A R K   RASKC+F+GY  G+KGY LY+L S    +SR+V
Sbjct: 751  PDLHDLRVFGCLAYASTLAAGRTKLAPRASKCIFLGYKSGTKGYVLYNLHSRFFSLSRNV 810

Query: 550  IFCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIISDAQ 729
            IF E +FP+                            S F   ++ +D + T     ++ 
Sbjct: 811  IFHETVFPY----------------------------SDFHKFSSNSDAILT-----EST 837

Query: 730  NDFADAQ-HDLAAQNTTVVQT------DPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVY 888
            NDFA  + + +    TT   T       P+   ++     P   R S+R +  P+YL  Y
Sbjct: 838  NDFAHYELYPITVLETTNTHTPSEQLQQPLTEEMQDIPVQP---RVSTRQKFRPNYLNQY 894

Query: 889  DCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQ 1068
             C         +SA +  S   YP+  +LS +K S+ + AF   IS   EP +YAQA  Q
Sbjct: 895  HC---------YSATSSNSACLYPLHSYLSYNKCSSNYTAFCLSISAHVEPSNYAQAITQ 945

Query: 1069 KEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGY 1248
              W+ AM  E+ AL +N+TW +  LP  +  IGCKWVY++KY+++GS++R+KARLVAKG+
Sbjct: 946  DCWKQAMMTELDALNRNRTWSLVSLPPGRKLIGCKWVYRIKYKADGSVDRHKARLVAKGF 1005

Query: 1249 TQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPG 1428
            TQ EG+DYF+TFSPVAK+TTVR L+ALA+   WFLHQLDV+NAFLHGDL EEVYM PP G
Sbjct: 1006 TQTEGIDYFETFSPVAKLTTVRFLLALASTNNWFLHQLDVDNAFLHGDLEEEVYMRPPQG 1065

Query: 1429 YLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITIL 1608
                + K VCKL KSLYGLKQASR W QKL S LL+ G+ QS +D SLF      SITIL
Sbjct: 1066 LQLPDSKLVCKLEKSLYGLKQASRNWNQKLNSELLHLGYKQSSADHSLFIKKQGSSITIL 1125

Query: 1609 CVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYAL 1788
             VYVDD++L+GN+ S+I+ +K HL +KF IKDLG LK+ LG+EVARS KGI + QRKY L
Sbjct: 1126 LVYVDDVVLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARSKKGIILNQRKYCL 1185

Query: 1789 DLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQ 1968
            +L+ E+G LGSKP+ TP D   +  ++  S L D + +RRLIGR+LYLT TRP++SFS+Q
Sbjct: 1186 ELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLYLTNTRPDISFSVQ 1245

Query: 1969 TLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSI 2148
             LSQ++S+P   HL AA RI RY+K  P  GLFY + + L ++ FSD+DWA C  TR+S+
Sbjct: 1246 QLSQFVSQPREPHLQAALRIVRYLKGAPGLGLFYPAENHLRIQAFSDSDWATCSTTRKSV 1305

Query: 2149 SGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHPQSL- 2325
            +G+ VFLG SL+SWKSKKQ T+SRSS+EAEYRA+A  TCE+QWL +L   + +K P    
Sbjct: 1306 TGYCVFLGKSLVSWKSKKQSTVSRSSSEAEYRALASLTCELQWLKFLSDSLFVKIPAPFS 1365

Query: 2326 MYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLP 2505
            +++DS+SA  I++N   HERTKHI++DCH +R KLQE L  LIH+PS  Q AD FTK L 
Sbjct: 1366 VFSDSQSAIQIAKNPTFHERTKHIEVDCHLIRIKLQEELLHLIHVPSANQLADAFTKSLY 1425

Query: 2506 PAQFNYLISKLSMLNIHAP 2562
            P  F + ISKL + NIH P
Sbjct: 1426 PKLFLHAISKLGLSNIHGP 1444


>gb|KYP42321.1| Copia protein [Cajanus cajan]
          Length = 1456

 Score =  775 bits (2002), Expect = 0.0
 Identities = 395/801 (49%), Positives = 537/801 (67%), Gaps = 10/801 (1%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            GIVERKHQH+L V RALLFQ+K+P  FW   +  A HIINRLP P+L  K+PFE+++N  
Sbjct: 662  GIVERKHQHILNVCRALLFQAKLPKQFWSFAVKQATHIINRLPTPLLSQKSPFEMIYNCK 721

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD +  K+FGCLA+ +TL+++R K   RASKC+F+GY  G+KG+ L++L +   LISR V
Sbjct: 722  PDLTELKVFGCLAFATTLSSKRTKLDRRASKCIFLGYKNGTKGFLLFNLHNKSFLISRDV 781

Query: 550  IFCENIFPFQ-EIASKSVSPEAPLFPISDLSSA------QDQSFSHFQ-NINAQNDIVTT 705
            +F E IFP+   + S S S    L  + D  +          +FSH   +I     + ++
Sbjct: 782  LFYEKIFPYSAHVPSMSASDSLLLDVVKDNDTTIYSDPFPTTTFSHGSPSIPLDTPLPSS 841

Query: 706  TQIISDAQNDFADAQH-DLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQ 882
               IS  +  F+      +     +  +    N+  + S    P  R S+R R  P YLQ
Sbjct: 842  ETTISTDRPPFSPINTCPIPTATLSTPELPSSNTTNDASQVVMPQTRVSTRIRKPPRYLQ 901

Query: 883  VYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQAS 1062
             Y C+   ++ S  +A   +    YP+  F++ +  S  H +F   IS   EP S+ +A+
Sbjct: 902  EYYCE---NLASSSAASNCL----YPLSSFVTYNNCSPSHTSFCLSISAQHEPTSFKEAN 954

Query: 1063 KQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAK 1242
             ++ W+ AM+AE++ALEKNQTW +  LP  K  +GCKWVY+VKY+ +GS+ERYKARLVAK
Sbjct: 955  SEECWRRAMEAELQALEKNQTWSLVRLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAK 1014

Query: 1243 GYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPP 1422
            G+TQ EG+DYF+TFSPV K++TVR L++LAAA  WFLHQLDV+NAFLHGDL EEVYM PP
Sbjct: 1015 GFTQTEGVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPP 1074

Query: 1423 PGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSIT 1602
            PG+  S+ + VCKL KSLYGLKQASRQW QKLT  L++  FIQS +D SLF      SIT
Sbjct: 1075 PGFKLSHPRLVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSIT 1134

Query: 1603 ILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKY 1782
             L VYVDD++L GND+++I A+K +L  +F IKDLG LK+ LG+E+ARS  G+ + QRKY
Sbjct: 1135 ALLVYVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFLGLEIARSQSGLILNQRKY 1194

Query: 1783 ALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFS 1962
             L+LL+E G    KP +TP+D   +  +++  PL D + +RRLIGR+LYLT TRP++SF+
Sbjct: 1195 CLELLSEHGLTDCKPVSTPIDASVKLYASEGLPLDDPTIFRRLIGRLLYLTNTRPDISFA 1254

Query: 1963 IQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRR 2142
            +Q LSQ++  P  TH  AA RI RY+KS+P  GLFY S +   ++ FSD+DWA C  TRR
Sbjct: 1255 VQQLSQFVDSPRATHFQAALRILRYLKSSPALGLFYPSQTEHRIQAFSDSDWASCPNTRR 1314

Query: 2143 SISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHPQS 2322
            S++GF +F G +LISWKSKKQ T+SRSS+EAEYRA+A  TCE+QWL +L  D+ I  P  
Sbjct: 1315 SVTGFCIFYGSALISWKSKKQSTVSRSSSEAEYRALASVTCELQWLLFLCHDLSINIPTP 1374

Query: 2323 L-MYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKP 2499
              ++ DS+SA  I++N   HERTKHI++DCH  R K+Q+GL  L H+PS  Q AD+FTK 
Sbjct: 1375 FSIFCDSQSAIYIAKNPTFHERTKHIEVDCHLTRLKIQQGLIHLFHVPSKSQLADVFTKA 1434

Query: 2500 LPPAQFNYLISKLSMLNIHAP 2562
            L P  F   +SKL +++I+ P
Sbjct: 1435 LYPRNFTEAVSKLCLIDIYNP 1455


>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
          Length = 1523

 Score =  776 bits (2005), Expect = 0.0
 Identities = 401/806 (49%), Positives = 539/806 (66%), Gaps = 12/806 (1%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKH+HLL VARALLFQS +P  FW   ILTAA++INR P P+L  KTPFE LF+K 
Sbjct: 684  GVVERKHRHLLNVARALLFQSHLPKPFWGDAILTAAYLINRTPTPLLQGKTPFEKLFHKS 743

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P+YSH ++FGC  +VST   +  KF  R+ + VFIGYP G KGYK+Y L+  K LISR V
Sbjct: 744  PNYSHLRVFGCRCFVSTHPLRPSKFDPRSIESVFIGYPHGQKGYKVYSLKDKKXLISRDV 803

Query: 550  IFCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIISDAQ 729
             F E  FP+Q   S +       FP    +   D     F +  +      T+ +    Q
Sbjct: 804  TFFETEFPYQNXLSTTSPSLDTFFPSLPQTPDIDDDHISFNHSGSNLQPSATSSVDXHPQ 863

Query: 730  ----NDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCK 897
                N  + +  D  +   ++  + PV S      P+P   RRSSR    P+ LQ +  +
Sbjct: 864  PTLDNSHSSSHVDPPSSPPSLNTSPPVISQ-----PSPSQPRRSSRPTKTPTTLQDFHIE 918

Query: 898  -------IPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQ 1056
                   +PPS  S+ +     SG  + +   LS D+LS  HKAF+ +I+   EP+S++Q
Sbjct: 919  AALPSRPVPPSSTSEVAH----SGTIHSLSQVLSYDRLSPMHKAFTVKITLAKEPRSFSQ 974

Query: 1057 ASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLV 1236
            A     W++AM  EI+AL+ N+TW +  LP+ K  IGCKWVYK+KY  +G+IERYKARLV
Sbjct: 975  AVLDSRWREAMNTEIQALQANKTWSLVPLPSHKKPIGCKWVYKIKYNPDGTIERYKARLV 1034

Query: 1237 AKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYML 1416
            AKG++Q EG+DY +TF+PVAK+TTVR+L++LA+ +GW LHQLDVNNAFL+GDL+E+VYM 
Sbjct: 1035 AKGFSQVEGIDYRETFAPVAKLTTVRVLLSLASIQGWHLHQLDVNNAFLNGDLYEDVYMQ 1094

Query: 1417 PPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDS 1596
             PPG+ +  + +VCKL KSLYGLKQASRQWF KL+S L   GF QS SD SLF  +    
Sbjct: 1095 LPPGFGRKGEHRVCKLHKSLYGLKQASRQWFLKLSSALKAAGFKQSWSDYSLFXRNTQGR 1154

Query: 1597 ITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQR 1776
             T L VYVDD+ILAGN +  I   K  L   F +KD+G L+Y LGIEVARS +GI +CQR
Sbjct: 1155 FTTLLVYVDDVILAGNSLEDIIETKQFLASHFKLKDMGQLRYFLGIEVARSKQGIVLCQR 1214

Query: 1777 KYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELS 1956
            KYAL+LL + GFLG+KPS  P++     +  D + L DASQYRRL+GR++YLTITRP+L 
Sbjct: 1215 KYALELLEDAGFLGAKPSRFPVEQSLTLTRGDGAELKDASQYRRLVGRLIYLTITRPDLV 1274

Query: 1957 FSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQET 2136
            +++  LSQ++  P   HL AA+++ RY+K TP +G+F  ST  L L  + DADWARC++T
Sbjct: 1275 YAVHILSQFMDTPRQPHLDAAYKVLRYVKQTPGQGIFLPSTGQLELTAYCDADWARCKDT 1334

Query: 2137 RRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHP 2316
            RRS +G+ +F G++ ISWK+KKQ T+SRSSAEAEYR++A T CEI WL  LL D+++ H 
Sbjct: 1335 RRSTTGYCIFFGNAPISWKTKKQGTVSRSSAEAEYRSMATTCCEITWLRSLLADLNVNHA 1394

Query: 2317 QSL-MYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFT 2493
             ++ ++ D+++A  I+ N   HERTKHI++DCH VREK+Q GL K +HI + +Q AD+FT
Sbjct: 1395 HAVKLFCDNQAAIHIASNPVFHERTKHIEMDCHVVREKVQRGLVKTMHIRTQEQPADLFT 1454

Query: 2494 KPLPPAQFNYLISKLSMLNIHAPLEG 2571
            KPL   QF+ L+SKL ++NIH  L G
Sbjct: 1455 KPLSSKQFSTLLSKLGVINIHTNLRG 1480


>dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subterraneum]
          Length = 1512

 Score =  772 bits (1994), Expect = 0.0
 Identities = 404/815 (49%), Positives = 528/815 (64%), Gaps = 21/815 (2%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G VERKHQHLL V R+LLFQSK+P  FW + +  A +IINR+  P+L NK+P+ +L+NK 
Sbjct: 691  GRVERKHQHLLNVGRSLLFQSKLPKKFWSYAVSHATYIINRVCTPLLQNKSPYHLLYNKP 750

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD    K+FG L Y STL  QR K   RA KC+F+GY  G KG  LYD+ +H + +SR++
Sbjct: 751  PDLEQLKVFGSLCYASTLQNQRTKLDPRARKCIFLGYKSGMKGVILYDIHNHNIFVSRNI 810

Query: 550  IFCENIFPFQEIASKSV-----SPEAPLFPISDLSSAQDQSFSHFQN--------INAQN 690
               ++I P+   +S S+     SP    F     S++   S  H  +         + +N
Sbjct: 811  THYDHILPYAS-SSYSIPWSYHSPNIDPFITPPTSNSGSSSIPHSTDHIHFNTPMCDQEN 869

Query: 691  DIVTTTQIISD------AQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSS 852
                ++Q  SD        ND   +Q  +  Q        P  +    S+ + P  R+S+
Sbjct: 870  PSQPSSQTPSDLFVPQVTDNDIVSSQPSIPHQPHDTHSPLPTTNLPSPSHNSIPQTRQST 929

Query: 853  RNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQI 1032
            R    P +L  Y C +     S  S+     G  YPI  F S   +S+K + ++  I+  
Sbjct: 930  RMSVKPKHLSDYVCNL-----SVDSSPPSSPGILYPISSFHSYSNISSKFRNYALSITAS 984

Query: 1033 TEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSI 1212
             EP+ Y +AS+Q+ W DAM  EI+AL+ N+TW     PA    IGCKWVYKVK++++GS+
Sbjct: 985  VEPRDYKEASQQQCWVDAMNNEIQALQHNKTWCYVTPPAHIKPIGCKWVYKVKHKADGSV 1044

Query: 1213 ERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGD 1392
            ERYKARLVAKGY Q EGLD+FDTFSPVAKITTVR LIALA+ + W L+Q+DVNNAFLHGD
Sbjct: 1045 ERYKARLVAKGYNQVEGLDFFDTFSPVAKITTVRTLIALASIRSWHLNQMDVNNAFLHGD 1104

Query: 1393 LHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSL 1572
            L E+VYM  P G       +VCKL KSLYGLKQASR+W++KLTS LL  G+ Q+ SD SL
Sbjct: 1105 LQEDVYMEVPQGVNSPKPHQVCKLLKSLYGLKQASRKWYEKLTSLLLKEGYTQASSDHSL 1164

Query: 1573 FTMSHDDSITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARST 1752
            FT+ H    T L VYVDDIILAGN + +   IKL +D  F IKDLG LKY LGIEVA S 
Sbjct: 1165 FTLKHGSDFTALLVYVDDIILAGNSLQEFARIKLIMDNAFKIKDLGPLKYFLGIEVAHSK 1224

Query: 1753 KGIHICQRKYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYL 1932
            +GI ICQRKY LDLL +TG LGSKP+ TP+D   +   + S    D   YRRLIG++LYL
Sbjct: 1225 QGISICQRKYCLDLLKDTGLLGSKPAPTPLDPSIKLHQDSSPAYDDVGGYRRLIGKLLYL 1284

Query: 1933 TITRPELSFSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDA 2112
            T TRP++SF+IQ LSQ+LS PTTTH   A R+ RY+K +P +GLF+   SPL L  F+DA
Sbjct: 1285 TTTRPDISFAIQQLSQFLSSPTTTHFDTACRVVRYLKGSPGRGLFFPRQSPLQLLGFADA 1344

Query: 2113 DWARCQETRRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLL 2292
            DWA C +TRRS SG+  F+G SLISW++KKQ T+SRSS+EAEYR+++  +CE+QW+ YLL
Sbjct: 1345 DWANCADTRRSTSGYCFFIGSSLISWRAKKQNTVSRSSSEAEYRSLSFASCELQWIVYLL 1404

Query: 2293 QDMHIK-HPQSLMYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPST 2469
            +D+ I      ++Y D++SA  I+ N   HERTKH+++DCH VR+K+Q G+FKL+ I + 
Sbjct: 1405 KDLSIDCERPPVLYCDNQSAIHIASNPVFHERTKHLEIDCHLVRDKVQSGVFKLLPISTK 1464

Query: 2470 QQTADIFTKPLPPAQFNYLISKLSMLNI-HAPLEG 2571
             Q AD FTK LPP  FN  +SKL+MLNI H P  G
Sbjct: 1465 AQLADFFTKALPPKVFNSFLSKLNMLNIFHVPACG 1499


>gb|PNY17451.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1425

 Score =  768 bits (1983), Expect = 0.0
 Identities = 400/823 (48%), Positives = 534/823 (64%), Gaps = 29/823 (3%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            GIVERKHQH+L  ARALLFQS +P  FW H +  + HIINRLP P L  K+P+++L+N +
Sbjct: 595  GIVERKHQHILGTARALLFQSHLPKIFWAHAVGHSVHIINRLPTPFLSQKSPYQMLYNCL 654

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD ++ K+FGCLAY +TL   RHK  +R+ KCV +G   G KG+ L+DL+S +V ISR V
Sbjct: 655  PDINNLKVFGCLAYATTLQTNRHKLDSRSRKCVSLGLKTGVKGHILFDLQSREVFISRDV 714

Query: 550  IFCENIFPF-----QEIASKSVSPEAP--------LFPISDLSSAQDQSFSHFQNINAQN 690
            +F E+IFPF      +I   + + ++P        LF       +   S    Q     +
Sbjct: 715  VFFEHIFPFYTKNQHQIDQTNSATQSPILYDDLDMLFTNHSTHHSSSPSLPLLQTATPHS 774

Query: 691  DIVTTTQIISDAQNDFADAQHDLAAQNTTVVQTDPV-----NSHIEHSNPNPPIL----- 840
                 +    D  +      HD  +    V++TD +     N+ +  S+ + PI+     
Sbjct: 775  PTSIPSTHSPDDHSSPPSPTHDHHSPCDPVIETDVMIPTSTNTPLTTSSNSLPIIAPPSI 834

Query: 841  ---RRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQ--YPIQDFLSVDKLSNKHK 1005
               R+S R +  PSYLQ Y  KI  +I    S  T  S  Q  +PI  F+S D LS  HK
Sbjct: 835  NPVRKSDRVKHPPSYLQDYHTKILGNISHSASDSTHPSSSQCKFPISSFISYDHLSPAHK 894

Query: 1006 AFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYK 1185
             ++  IS +TEP SY +A   + W+ A+  E+ AL KN TW M  LP  K  IGCKWV+K
Sbjct: 895  HYALNISTLTEPSSYEEAMCDENWKSAVNVELTALLKNNTWDMVKLPPHKKAIGCKWVFK 954

Query: 1186 VKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLD 1365
            +K  ++G++ER+KARLVAKG+TQ EG+DY DTFSPV K+TTVR  +A+AA++ W L QLD
Sbjct: 955  LKLHADGTVERHKARLVAKGFTQTEGIDYIDTFSPVVKMTTVRTFMAIAASQNWPLFQLD 1014

Query: 1366 VNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGF 1545
            VN AFLHGDL+EEVYM PPPG   ++   VCKL +SLYGLKQASRQW  KLT  LL+ G+
Sbjct: 1015 VNTAFLHGDLNEEVYMKPPPGLPLAHPDLVCKLQRSLYGLKQASRQWNVKLTETLLSSGY 1074

Query: 1546 IQSKSDSSLFTMSHDDSITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYI 1725
            IQSK+D SLFT +     T + VYVDD++L G DI +I  +K  LD KF+IKDLG+LKY 
Sbjct: 1075 IQSKADYSLFTKNTSTGFTAILVYVDDLVLGGTDIDEIHQLKALLDTKFSIKDLGSLKYF 1134

Query: 1726 LGIEVARSTKGIHICQRKYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYR 1905
            LG EVARS  GI +CQRKY LDLL ++G LG+KP+ TPM    Q   +  + ++D + YR
Sbjct: 1135 LGFEVARSKTGISLCQRKYTLDLLQDSGLLGTKPTPTPMQPHLQLQKSSGNAISDPTTYR 1194

Query: 1906 RLIGRMLYLTITRPELSFSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSP 2085
            RLIGR+LYLT +RPE+S+++  LSQ+L  PT  H+ A   + +Y+K+ P +GLF+SS+S 
Sbjct: 1195 RLIGRLLYLTHSRPEISYAVSKLSQFLDSPTDAHMLAGLHVLKYLKNNPGQGLFFSSSSS 1254

Query: 2086 LHLKCFSDADWARCQETRRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTC 2265
            L LK +SD+DW  C +TRRS +GF  FLG S+ISWKSKKQ  +SRSS+EAEYRA+A   C
Sbjct: 1255 LALKGYSDSDWGACPDTRRSTTGFCFFLGTSIISWKSKKQTVVSRSSSEAEYRALAQAAC 1314

Query: 2266 EIQWLTYLLQDMHIKHPQS-LMYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGL 2442
            E QWL YLLQD  I H    ++Y D++SA  I+ N   HERTKHI++DCH VR+K+Q  +
Sbjct: 1315 EGQWLLYLLQDFQIPHDSPIILYCDNKSALHIAANPVFHERTKHIEIDCHVVRDKVQANI 1374

Query: 2443 FKLIHIPSTQQTADIFTKPLPPAQFNYLISKLSMLNIHAPLEG 2571
              L+ + S +Q ADIFTK L P  F+ L+SKL  ++IH+ L G
Sbjct: 1375 IHLLPVSSKEQIADIFTKSLHPGPFHTLLSKLGTIDIHSSLRG 1417


>gb|PNY16454.1| flavonol sulfotransferase-like protein [Trifolium pratense]
          Length = 1475

 Score =  768 bits (1984), Expect = 0.0
 Identities = 408/824 (49%), Positives = 537/824 (65%), Gaps = 27/824 (3%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKHQHLL  ARALLFQS +P  FWD+ I  + HIINRLP P L+N +P+++L N +
Sbjct: 635  GVVERKHQHLLGTARALLFQSSLPKVFWDYAIGHSVHIINRLPTPFLNNMSPYQVLHNAL 694

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD S+ K+FG L Y +TL+A R K  +R+ KC+ +G+  G KG+ L DL+S +V +SR V
Sbjct: 695  PDISNLKVFGSLCYAATLSAHRKKLDSRSRKCLLLGFKFGVKGHILLDLKSREVFVSRDV 754

Query: 550  IFCENIFPFQE------IASKSVSPEAPLF--PISDLSSAQDQSFSHFQNINA------- 684
            +F E+IFPFQ+      + S     ++PL+  P  D   +  +S S    I++       
Sbjct: 755  VFFEHIFPFQQQSQDVAVKSHLSHSQSPLYDDPFIDCPHSSPESPSPNDPISSPPPSNSL 814

Query: 685  ----QNDIVTTTQIISDAQNDFADAQHDLAAQN-TTVVQTDPVNSHIEHS-NPNP----P 834
                 N I   + I++   +  A   H  +  N  T   T  + S++ H   P+P    P
Sbjct: 815  PHDIHNSIPNQSPILNSPPH--ASTLHTPSTNNHDTDNPTVSIPSYVSHHPTPSPAMPPP 872

Query: 835  ILRRSSRNRTNPSYL-QVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAF 1011
              R+S+R    P YL + Y C       S     +  S  +YP+  ++S   LS+ H  +
Sbjct: 873  PTRKSNRITHPPPYLTEHYYCNAAIH-DSTKDTPSSSSKCKYPLSSYISYQHLSSAHHHY 931

Query: 1012 SAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVK 1191
             + IS I+EP  Y +A     W+ A+ AE+ AL+K  TW +  LP  KH IGCKWV+K+K
Sbjct: 932  LSNISTISEPTCYEKAVCDPNWKAAINAELSALDKYNTWKLVPLPKHKHAIGCKWVFKLK 991

Query: 1192 YRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVN 1371
              +NG+IERYKARLVAKGYTQ EG+DY DTFSPV K+TT+R+ +A+AA + W L+QLDVN
Sbjct: 992  LHANGTIERYKARLVAKGYTQTEGIDYMDTFSPVVKMTTIRMFLAIAAIQNWPLYQLDVN 1051

Query: 1372 NAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQ 1551
             AFLHGDL EEVYM PPPG    +   VCKL +SLYGLKQASRQW  KLT  LL+ G+ Q
Sbjct: 1052 TAFLHGDLDEEVYMKPPPGLDLPSPNLVCKLQRSLYGLKQASRQWNTKLTQTLLSSGYTQ 1111

Query: 1552 SKSDSSLFTMSHDDSITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILG 1731
            SKSD SLFT       T++ VYVDD++L G D  +I+ IK  LD KF+IKDLGTLKY LG
Sbjct: 1112 SKSDYSLFTKQASSGFTVILVYVDDLVLGGTDDKEIQKIKALLDRKFSIKDLGTLKYFLG 1171

Query: 1732 IEVARSTKGIHICQRKYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRL 1911
             EVAR+  GI +CQRKYALDL+ +TG LG+KP TTPM  + Q  S   + L+D S YRRL
Sbjct: 1172 FEVARTQAGISLCQRKYALDLIQDTGLLGAKPCTTPMQPQLQLHSESGTILSDPSTYRRL 1231

Query: 1912 IGRMLYLTITRPELSFSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLH 2091
            +GR+LYLT +RPE+++S+  LSQ+LS PT  H+ A   + +YIK+ P +GLF+++ S L 
Sbjct: 1232 VGRLLYLTHSRPEIAYSVSKLSQFLSAPTNEHMLAGLHVLKYIKNCPGQGLFFAANSSLK 1291

Query: 2092 LKCFSDADWARCQETRRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEI 2271
            LK FSD+DWA C +TRRS +G   FLG+SLISWKSKKQ  +SRSS+EAEYRA+A  TCE 
Sbjct: 1292 LKGFSDSDWAACPDTRRSTTGLCFFLGNSLISWKSKKQNVVSRSSSEAEYRALAQATCEA 1351

Query: 2272 QWLTYLLQDMHIKHPQSL-MYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFK 2448
            QWL YLL D HI H   + +Y D+RSA  I+ N   HERTKHI+LDCH VREKL  GL  
Sbjct: 1352 QWLKYLLNDFHISHSSPIVLYCDNRSALHIAANPVFHERTKHIELDCHVVREKLLAGLIH 1411

Query: 2449 LIHIPSTQQTADIFTKPLPPAQFNYLISKLSMLNIHAPLEGGCK 2580
            L+ + S +Q ADI TK L P  F+ L +KL M++I++ L G  K
Sbjct: 1412 LLPVSSKEQVADILTKSLHPGPFHTLQNKLGMIDIYSSLRGDVK 1455


>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1427

 Score =  763 bits (1971), Expect = 0.0
 Identities = 399/801 (49%), Positives = 531/801 (66%), Gaps = 4/801 (0%)
 Frame = +1

Query: 193  IVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKMP 372
            +VERKH+H+L + R LLF S VP SFW + +  A H+INRLP+P+L+N +P+++L++K P
Sbjct: 645  VVERKHRHILNITRTLLFHSNVPKSFWCYAVGHAIHLINRLPSPVLNNSSPYQMLYDKPP 704

Query: 373  DYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHVI 552
                 K+FG L Y STL   R K   +A+K V++G   G+KG+ + DL +  + +SR+V+
Sbjct: 705  TLLDLKVFGSLCYASTLVQGRSKLAPKATKGVYLGVKQGTKGFLVLDLLTRSIFVSRNVV 764

Query: 553  FCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIISDAQN 732
            F E+IFPF E  S  ++           S  Q+ +   F  +++ +  VTT    S    
Sbjct: 765  FYEHIFPFFEKGSTVITN----------SQQQNDACFDFLYLDSSSHPVTTIDNSSLLDI 814

Query: 733  DFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKI---P 903
            D A  ++DL          D   S       +P  LR+S+R++ +P+YL+ Y C +    
Sbjct: 815  DSAHYENDL---------NDIDESAHPSETSSPSQLRKSTRHKCSPAYLKDYHCNLLIGV 865

Query: 904  PSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQD 1083
            P  + +H         +YP+   LS D LS  +  +   I+   EP ++ QA K K W +
Sbjct: 866  PPPEDKHI--------RYPLNTVLSYDSLSASYSRYVLSITTHVEPHTFNQAVKNKVWVE 917

Query: 1084 AMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEG 1263
            AM+AE+ ALE N+TW +  LP  K  IG KWVYK+KY+S+GSIERYKARLV KGYTQ +G
Sbjct: 918  AMQAELDALEHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDGSIERYKARLVVKGYTQIQG 977

Query: 1264 LDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSN 1443
            LDYFDTF+PVAK++TVR+L+A+A+ + W LHQLD+NNAFLHGDL E+VYM  P G     
Sbjct: 978  LDYFDTFAPVAKLSTVRMLLAIASCQHWELHQLDINNAFLHGDLLEDVYMEIPQGLNIDK 1037

Query: 1444 DKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVD 1623
               VCKL KSLYGLKQASRQWF KL+S LL+  + QS+ D SLFT  H    T++ +YVD
Sbjct: 1038 PNHVCKLNKSLYGLKQASRQWFAKLSSFLLSLHYKQSQHDHSLFTKHHGTHFTVILIYVD 1097

Query: 1624 DIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLLTE 1803
            D+I+AG D  +I  IK  LD KF IKDLG L+Y LG+E+ARS  GI + QRKY LDLL E
Sbjct: 1098 DLIIAGTDSEEINHIKQSLDVKFKIKDLGPLRYFLGLEIARSHLGISLSQRKYTLDLLDE 1157

Query: 1804 TGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLSQY 1983
            T FL  KP  TP+    + S    SP  D + YRRLIG++LYL  TRP++S+S+Q LSQ+
Sbjct: 1158 TSFLAGKPVLTPIIKGTRLSHTTDSPYEDPAGYRRLIGKLLYLITTRPDISYSVQQLSQF 1217

Query: 1984 LSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGFAV 2163
            LS P  +H  AA R+ RY+K  P +GLFY + SPL LK FSD+DWA C +TRRS+SG+++
Sbjct: 1218 LSCPQQSHYQAAIRVLRYLKGNPGQGLFYPADSPLQLKAFSDSDWASCPDTRRSLSGYSI 1277

Query: 2164 FLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKH-PQSLMYTDS 2340
            FLG+SLISWK KKQ TISRSS+EAEYRA+A T CEIQWLTYLLQD  +     +L+Y D+
Sbjct: 1278 FLGNSLISWKCKKQSTISRSSSEAEYRALAATACEIQWLTYLLQDFSVPFTTPALLYCDN 1337

Query: 2341 RSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPAQFN 2520
            +SA  I+ N+  HERTKHI++DCH VREKLQ GLF L+ I S+ Q ADI TKPL P+ F 
Sbjct: 1338 QSARHIASNAVFHERTKHIEIDCHLVREKLQAGLFHLLPIASSHQLADILTKPLDPSPFQ 1397

Query: 2521 YLISKLSMLNIHAPLEGGCKD 2583
            YL+SKL ++NI++P   G  D
Sbjct: 1398 YLLSKLGVINIYSPACRGVLD 1418


>gb|OMO88956.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1451

 Score =  763 bits (1970), Expect = 0.0
 Identities = 401/828 (48%), Positives = 548/828 (66%), Gaps = 30/828 (3%)
 Frame = +1

Query: 193  IVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKMP 372
            IVERKHQH+L VAR+L FQ+ +P+ FW  C+L A  +INR+P  +L N TPF+ LFN+ P
Sbjct: 639  IVERKHQHILNVARSLRFQASLPIDFWGECVLHAVFLINRIPTKVLGNVTPFQKLFNESP 698

Query: 373  DYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHVI 552
            +    K+FG LA+ S  +  ++KF +R+ K VF+G+  G KGYKLYDL+++K  +SR V 
Sbjct: 699  NIDVLKVFGSLAFASNHSNIKNKFDSRSIKSVFLGFQPGVKGYKLYDLQNNKKNLSRDVT 758

Query: 553  FCENIFPFQEIA--------SKSVSPEAPLFPISDLSSAQD-----------QSFSHFQN 675
            F E+I+PF E          SK +S E  + P SD  +A +           Q+ SH  N
Sbjct: 759  FYEHIYPFTEEYAKTDNLQFSKHISTENLVLPNSDNFAAMNDSIPSSDVSTQQNMSHLSN 818

Query: 676  I-----NAQNDIVTTTQIISDAQNDFADAQHDLAAQNTTVVQTDPVNSHI----EHSNPN 828
            +     ++  + V    I +  QN+     H+++          P NS I    + SN N
Sbjct: 819  VPVASSSSNTEAVLQIPIATVYQNN--PVLHEISEPILQSSNVGPANSTIPNTSQQSNTN 876

Query: 829  PPILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKA 1008
               +RRS+R +  P +LQ ++C       S HS  ++ S            D +++KHKA
Sbjct: 877  YHNVRRSTRLKFRPPHLQSFECNQVQKT-SPHSLSSVFS-----------YDNITSKHKA 924

Query: 1009 FSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKV 1188
            F+  I Q TEP++Y +A K ++WQ AM  E+ ALEK +TW + DLP  K  IGCKWVYKV
Sbjct: 925  FAVAIDQDTEPRNYKEAIKSQQWQQAMNEELEALEKTKTWKLVDLPHGKQPIGCKWVYKV 984

Query: 1189 KYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDV 1368
            K +++GSIERYKARLVAKGYTQ+EG+DY DTFSPVAKI T+R L+ +AA KGW+LHQ DV
Sbjct: 985  KRKADGSIERYKARLVAKGYTQQEGVDYLDTFSPVAKIATIRTLLVVAALKGWYLHQCDV 1044

Query: 1369 NNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFI 1548
            N  FLHGDL EEVYM  P GYL+ + K VCKL KSLYGLKQASRQW  KLT  L+ YGF 
Sbjct: 1045 NTTFLHGDLSEEVYMKLPEGYLEGSTK-VCKLVKSLYGLKQASRQWNLKLTESLIKYGFH 1103

Query: 1549 QSKSDSSLFTMSHDDSITILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYIL 1728
            QS++D +LF    D +   L VYVDDII+A NDI+++  IK +L + F+IKDLG LK+ L
Sbjct: 1104 QSQADHTLFIKFVDKNFIALLVYVDDIIVASNDITEVINIKAYLHDLFSIKDLGELKFFL 1163

Query: 1729 GIEVARSTKGIHICQRKYALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRR 1908
            G+EVARS +GI++CQ+KY +DLL +  FL  KP++TP+  + + ++   +PL DASQYR+
Sbjct: 1164 GLEVARSKQGINVCQKKYTMDLLKDMNFLVCKPTSTPILPETRLTTESGTPLADASQYRQ 1223

Query: 1909 LIGRMLYLTITRPELSFSIQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPL 2088
            L+G++ YLT TR ++S+++Q L+Q+L KPT+ HL  AHR+ RY+K T  +GL +SS    
Sbjct: 1224 LVGKLQYLTTTRLDISYAVQQLAQFLDKPTSDHLQVAHRVLRYLKGTIGQGLLFSSQGIF 1283

Query: 2089 HLKCFSDADWARCQETRRSISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCE 2268
             LK +SD+DW  C ++R+SI+G+ +FLGDSL+SWK+KKQ T+SRSS+EAEYRA+A T CE
Sbjct: 1284 QLKAYSDSDWGTCLDSRKSITGYCIFLGDSLVSWKTKKQNTVSRSSSEAEYRALATTVCE 1343

Query: 2269 IQWLTYLLQDMHIK-HPQSLMYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLF 2445
            IQWL YL++D+ I   P + ++ D+ SA  I++N   HERTKHI +DCH VR KLQEGL 
Sbjct: 1344 IQWLNYLMKDLQITLEPSTPLFCDNLSAIHIAKNPVFHERTKHIDIDCHVVRTKLQEGLI 1403

Query: 2446 KLIHIPSTQQTADIFTKPLPPAQFNYLISKLSMLNIHAP-LEGGCKDS 2586
            KL+ + S  Q AD FTK L    F    SKL + N++ P L G  ++S
Sbjct: 1404 KLLPVSSKLQLADCFTKVLSSTNFINAFSKLGIQNLYIPSLRGDVRES 1451


>gb|PNX97998.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 964

 Score =  747 bits (1928), Expect = 0.0
 Identities = 383/797 (48%), Positives = 519/797 (65%), Gaps = 6/797 (0%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKH+HLL VARAL FQ+K+PLSFW  C+LTAA++IN+LP PIL  K+P ++L    
Sbjct: 187  GVVERKHRHLLDVARALRFQAKLPLSFWGECVLTAAYLINKLPTPILKYKSPHQVLLGSP 246

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P YS  ++FGCL +   +  Q HKF  RA   +F+GYP   KGY++YD+ + K+ +SR V
Sbjct: 247  PSYSSLRVFGCLCFAKNMNIQ-HKFDERAKPGIFVGYPFNQKGYRIYDMHTRKIYVSRDV 305

Query: 550  IFCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQI---IS 720
             F E +FP+ ++ + S +        SD+S   +  F  ++  +  +++   + I   IS
Sbjct: 306  QFFETVFPYHDLQTPSFA--------SDISI--NTQFLDYEVDDTPSNLSPASSIPPGIS 355

Query: 721  DAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNP--NPPILRRSSRNRTNPSYLQVYDC 894
               N      +  +  N + +   PV    +HS    N P  R   R+RT    L  + C
Sbjct: 356  HHDNTIVTIPNP-SVDNPSEIPAIPVEPPQQHSPTAINHPERRYPLRHRTPSVRLTDHVC 414

Query: 895  KIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKE 1074
             I            + S   +P++++ S+  LS  H+A    I +  EP SY+QA K  E
Sbjct: 415  DI----------NNVTSQSAFPLKNYFSLSNLSTSHRALLVNIIENKEPTSYSQAIKSAE 464

Query: 1075 WQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQ 1254
            W++AM  EI ALE N TW+++ LP  K  IGCKWVYK+KY S+G++ERYKARLVAKGY Q
Sbjct: 465  WREAMAKEIHALESNNTWVLSPLPNGKTAIGCKWVYKIKYHSDGTVERYKARLVAKGYNQ 524

Query: 1255 EEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYL 1434
              G+DY +TF+PVAK+ TVRLL+++AA K W LHQLDVNNAFL GDL+EEVYM  PPG+ 
Sbjct: 525  VHGIDYHETFAPVAKLVTVRLLLSIAAIKNWSLHQLDVNNAFLQGDLNEEVYMKLPPGFS 584

Query: 1435 QSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCV 1614
                  VCKL KS+YGLKQASRQWF K ++ L+  GF QS SD SLFT   + +   + V
Sbjct: 585  HKGQPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFHQSISDYSLFTFKSNHTTIFVLV 644

Query: 1615 YVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDL 1794
            YVDDII+ GN+   I  IK  L + F+IKDLG L Y LGIEV+RS KGI +CQRKY LD+
Sbjct: 645  YVDDIIITGNNDDAISDIKKFLAQAFSIKDLGNLSYFLGIEVSRSKKGIFLCQRKYTLDI 704

Query: 1795 LTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTL 1974
            L++ G  G +PS  PM+   +   ND SPL D + YRRLIGR+LYLT+TRP++ +++ TL
Sbjct: 705  LSDAGLTGCRPSEFPMEQHLRLRPNDGSPLPDPTVYRRLIGRLLYLTVTRPDIQYAVNTL 764

Query: 1975 SQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISG 2154
            SQ++  P TTHL AA R+ RY+K +  KGLF S++S L L  ++D+DWA C  TRRS +G
Sbjct: 765  SQFMQSPCTTHLDAATRVLRYLKGSVGKGLFLSASSSLQLIGYADSDWAGCPTTRRSTTG 824

Query: 2155 FAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKHPQSL-MY 2331
            +   LG + ISWK+KKQPTISRSSAEAEYR++A    E+QWL +LL D+ I HP  + ++
Sbjct: 825  YFTMLGSNPISWKTKKQPTISRSSAEAEYRSLATLASELQWLKFLLSDLDIAHPLPITVH 884

Query: 2332 TDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPA 2511
             DS++A  I++N   HERTKHI++DCHFVREK++ GL +  ++ S  Q ADIFTKPL   
Sbjct: 885  CDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGLLRPSYLRSFDQLADIFTKPLGGD 944

Query: 2512 QFNYLISKLSMLNIHAP 2562
             +  L+ KL +L I  P
Sbjct: 945  AYKRLLGKLGVLEISIP 961


>dbj|GAU41679.1| hypothetical protein TSUD_272630 [Trifolium subterraneum]
          Length = 1178

 Score =  753 bits (1945), Expect = 0.0
 Identities = 399/797 (50%), Positives = 524/797 (65%), Gaps = 6/797 (0%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKHQH+L VA                          R   P+L+ K P+E+L  + 
Sbjct: 432  GVVERKHQHILNVA--------------------------RFSTPLLNFKCPYEMLHKEP 465

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            P   H K+FGCL+Y +TL A R KF +RA K +F+GY  G+KGY LYDL SH++ +SR+V
Sbjct: 466  PSIVHLKVFGCLSYATTLQAHRTKFVSRARKAIFLGYKDGTKGYILYDLHSHEIFVSRNV 525

Query: 550  IFCENIFPF---QEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIIS 720
            IF E  FPF     + + S SP + L       +  D +      ++  +  +T + II 
Sbjct: 526  IFYETDFPFHLSNSVKTDSASPASHLNHTLLYDAEPDPNALPIPVMHEPD--LTLSPIIG 583

Query: 721  DAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKI 900
             + ND                 + P+NS      PNP  LR+SSR    P +L+ + C+ 
Sbjct: 584  PSYND-----------------STPINSPESSPIPNPAPLRKSSRVIQRPRHLEGFHCET 626

Query: 901  PPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQ 1080
                 S  S+ T+     YP+   LS +  +  + A    IS I EPK+Y QASK + W+
Sbjct: 627  LIGTHSAASSNTV-----YPLSSVLSYNNCAPNYHALCCSISAIVEPKTYTQASKFECWR 681

Query: 1081 DAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEE 1260
            +AM AE+ AL++N+TW + DLP  K  +GCKWVYKVKY +NGSIERYKARLVAKGYTQ E
Sbjct: 682  NAMNAELLALDENKTWSVVDLPNGKVPVGCKWVYKVKYHANGSIERYKARLVAKGYTQLE 741

Query: 1261 GLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQS 1440
            G+DYFDTFSPVAKITTVR+L+ALA+ KGW L QLDVNNAFLHGDL+E+VYM  PPG+  +
Sbjct: 742  GVDYFDTFSPVAKITTVRVLLALASIKGWHLEQLDVNNAFLHGDLNEDVYMSLPPGFAAT 801

Query: 1441 ND-KKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVY 1617
            N+  KVCKL KS+YGLKQASRQW+ KL+S L++ G+  S+SD SL+  S  +S T L VY
Sbjct: 802  NESNKVCKLHKSIYGLKQASRQWYSKLSSSLVSLGYTPSQSDHSLYIKSTTNSFTALLVY 861

Query: 1618 VDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLL 1797
            VDDI+LAGN I +I+ +KL LD+KF IKDLG L+Y L +E+ARS  GI + QRKY L+LL
Sbjct: 862  VDDIVLAGNSIHEIQTVKLFLDQKFKIKDLGKLRYFLVLEIARSDTGIFVNQRKYTLELL 921

Query: 1798 TETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLS 1977
             + G LG+KPS+ P     + SS D +PL D S YRRLIGR+LYLT TRP++SFS+Q LS
Sbjct: 922  EDVGLLGTKPSSIPFHPTTKLSSTDGAPLDDPSSYRRLIGRLLYLTHTRPDISFSVQHLS 981

Query: 1978 QYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGF 2157
            Q++SKP   H  AA  I +Y+KS P KG+F S++S L +  F+D+DWARC ETR+SI GF
Sbjct: 982  QFVSKPLVPHYNAAMHILKYLKSDPAKGIFLSASSSLKISAFADSDWARCPETRKSIIGF 1041

Query: 2158 AVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHI--KHPQSLMY 2331
             V LG SLISWKSKKQ T+SRSS EAEYRA+A  TCEIQWL Y+ QD  I   +P + ++
Sbjct: 1042 CVLLGSSLISWKSKKQNTVSRSSTEAEYRALASLTCEIQWLQYIFQDFKIIFSNP-AYVF 1100

Query: 2332 TDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPA 2511
             D++SA  ++ N   HER+KHI+LDCH +REK+Q  L  L+ +P+T Q AD+FTKPL   
Sbjct: 1101 CDNKSAIYLAHNPTFHERSKHIELDCHVIREKIQSKLIHLLPVPTTSQLADVFTKPLNHP 1160

Query: 2512 QFNYLISKLSMLNIHAP 2562
             F+  +SKL + +IH+P
Sbjct: 1161 AFSSFLSKLGLCSIHSP 1177


>gb|PNX93131.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 982

 Score =  746 bits (1925), Expect = 0.0
 Identities = 391/799 (48%), Positives = 522/799 (65%), Gaps = 10/799 (1%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G VERKHQH+L +ARALL+QS +P  FW + +L A  IIN++  P+L NK+P E+LF+ +
Sbjct: 193  GRVERKHQHILNIARALLYQSNLPKYFWSYAVLHATAIINKIVTPVLQNKSPHEMLFHCL 252

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD +  K+FG LAY STL   + K   R  KCVF+G   G KG  L+DL+S  + +SR+V
Sbjct: 253  PDLNELKVFGSLAYASTLDVNKTKLSPRGRKCVFLGQKQGVKGSILFDLDSKNIFLSRNV 312

Query: 550  IFCENIFPFQEIASK-------SVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTT 708
               ++I P+    SK       +++ E    P  D+    DQS +     +        T
Sbjct: 313  THFDHILPYTTNTSKLHWHYHSTINCE----PFLDI----DQSHTSTNPSDTTPSPTPPT 364

Query: 709  QIISDAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNP--PILRRSSRNRTNPSYLQ 882
             IISD                      +P  S    S+P P  P   R  R +  PSYL 
Sbjct: 365  NIISDP---------------------NPSTSSPLPSSPFPIQPANTRPDRIKHRPSYLS 403

Query: 883  VYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQAS 1062
             + C       S  SA++  +G  YPI  F S+ +LS  H  F++ ++Q TEP++Y +A 
Sbjct: 404  DFVCSA-----SDDSAKSSSTGTIYPISSFHSLSQLSPSHSVFTSSLTQHTEPRTYTEAC 458

Query: 1063 KQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAK 1242
            K + W  AM +E+ AL +  TW + DLP +   IG KWVYK+K++S+G+IERYKARLVAK
Sbjct: 459  KSQHWIQAMTSELEALARTGTWKIVDLPPNVKPIGSKWVYKIKHKSDGTIERYKARLVAK 518

Query: 1243 GYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPP 1422
            GY Q EGLD+FDTFSPVAK+TTVR+L+A+A+ KGWFLHQLDVNNAFLHGDL E VYM  P
Sbjct: 519  GYNQVEGLDFFDTFSPVAKLTTVRMLLAIASIKGWFLHQLDVNNAFLHGDLQENVYMSIP 578

Query: 1423 PGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSIT 1602
             G   S   +VCKL KSLYGLKQASR+W++KLTS L+  G+ QS SD SLFT+S  D+ T
Sbjct: 579  DGVQCSKPNQVCKLLKSLYGLKQASRKWYEKLTSLLVKEGYTQSSSDHSLFTISQQDNFT 638

Query: 1603 ILCVYVDDIILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKY 1782
             L +YVDDIILAG  + +I  IK  LD  F IKDLG +KY LG+EVA S +GI I QRKY
Sbjct: 639  ALLIYVDDIILAGTSLQEINRIKNILDTHFKIKDLGVVKYFLGLEVAHSKEGISISQRKY 698

Query: 1783 ALDLLTETGFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFS 1962
             LDLL ++G LGSKP++TP+D   +   +D  P  D S YRRL+G++LYLT TRP+++F+
Sbjct: 699  CLDLLHDSGLLGSKPASTPLDPSVKLHHDDGKPFEDISMYRRLVGKLLYLTNTRPDIAFA 758

Query: 1963 IQTLSQYLSKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRR 2142
             Q LSQ+L KPT TH  AA R+ RY+K  P  GL +   + + L  +SDADWA C +TRR
Sbjct: 759  TQQLSQFLHKPTMTHYKAACRVIRYLKHNPGMGLIFKRNADIQLIGYSDADWAGCLDTRR 818

Query: 2143 SISGFAVFLGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIK-HPQ 2319
            S +G+  F+G SLISWK+KKQ TIS+SS+EAEYRA++  TCE+ WL YLL+D+HI+   Q
Sbjct: 819  STTGYCFFVGSSLISWKAKKQTTISKSSSEAEYRALSSATCELVWLLYLLKDLHIECSKQ 878

Query: 2320 SLMYTDSRSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKP 2499
             +++ D++SA  I+ N   HERTKHI++DCH VREK+QEGL +LI + + +Q AD  TK 
Sbjct: 879  PVLFCDNQSALHIASNPVFHERTKHIEIDCHLVREKVQEGLLRLIPVSTQEQLADFLTKS 938

Query: 2500 LPPAQFNYLISKLSMLNIH 2556
            LP  +F+  + KL +L+I+
Sbjct: 939  LPAPKFHDFLCKLGLLDIY 957


>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1353

 Score =  755 bits (1949), Expect = 0.0
 Identities = 386/794 (48%), Positives = 530/794 (66%), Gaps = 3/794 (0%)
 Frame = +1

Query: 190  GIVERKHQHLLQVARALLFQSKVPLSFWDHCILTAAHIINRLPAPILHNKTPFEILFNKM 369
            G+VERKHQH+L +ARAL+FQS V   FW++ I  A H+INRLP   L   +P+ +L+++ 
Sbjct: 578  GVVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEK 637

Query: 370  PDYSHFKIFGCLAYVSTLTAQRHKFQARASKCVFIGYPLGSKGYKLYDLESHKVLISRHV 549
            PD+SH K+FGCLA+ STL+  R K + R+ KC+F+GY  G+KG+ +YDL++ +  ISR V
Sbjct: 638  PDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDV 697

Query: 550  IFCENIFPFQEIASKSVSPEAPLFPISDLSSAQDQSFSHFQNINAQNDIVTTTQIISDAQ 729
             F ENIFP Q+  S   S + P+ PI                  AQ  + +   I S   
Sbjct: 698  QFYENIFPLQKDFSIQ-STDGPVVPI------------------AQMPLTSCDPIPSHTH 738

Query: 730  NDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSS-RNRTNPSYLQVYDCKIPP 906
            ++  + +H+    ++T+  T+  NS   +   N P +RR+S R +  P YLQ Y C +  
Sbjct: 739  DNLDETEHE--HNSSTLPMTNSSNSDQPNIEINIPEIRRTSQRVKNRPGYLQDYHCTLAA 796

Query: 907  SIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDA 1086
            S   Q S     S  +YPI D+L     S   ++F + IS I EP+SY  A     W++A
Sbjct: 797  SKVDQSS-----STARYPISDYLPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEA 851

Query: 1087 MKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGL 1266
            ++AE+ AL+K +TWI+TDLP +K  +GC+WV+KVKY ++GS+ERYKARLVAKG+TQ  GL
Sbjct: 852  IRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGL 911

Query: 1267 DYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSND 1446
            DY DTFSPV ++TT+R+ +A+AAA  W +HQLD+N AFLHGDL EEVYM PPPG + S+ 
Sbjct: 912  DYIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSP 971

Query: 1447 KKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDD 1626
             KVCKL KSLYGLKQ SRQW  KLT  L  +GF+QSKSD SLFT   +     + VYVDD
Sbjct: 972  NKVCKLQKSLYGLKQVSRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDD 1031

Query: 1627 IILAGNDISKIEAIKLHLDEKFTIKDLGTLKYILGIEVARSTKGIHICQRKYALDLLTET 1806
            +I++G+D ++I  +K  LD++F+IKDLG L Y LG+E +RS +GI +CQRKYAL+LL +T
Sbjct: 1032 LIISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDT 1091

Query: 1807 GFLGSKPSTTPMDCKAQFSSNDSSPLTDASQYRRLIGRMLYLTITRPELSFSIQTLSQYL 1986
            G L SKP +TPMD   +   +     +D S YRRL+GR++YLT TRP+L+F++  LSQ++
Sbjct: 1092 GLLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFM 1151

Query: 1987 SKPTTTHLAAAHRI*RYIKSTPVKGLFYSSTSPLHLKCFSDADWARCQETRRSISGFAVF 2166
             +P   H  AA ++ RY+K+TP KGLF+ S+S L L  ++D+DWA C ++RRSISGF  F
Sbjct: 1152 HQPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFF 1211

Query: 2167 LGDSLISWKSKKQPTISRSSAEAEYRAIALTTCEIQWLTYLLQDMHIKH--PQSLMYTDS 2340
            LG++L+SWKSKKQ  +SRSS+EAEYRA+AL  CE QWL  LL D  ++   P SL + D+
Sbjct: 1212 LGNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISL-FCDN 1270

Query: 2341 RSAYCISQNSCHHERTKHIQLDCHFVREKLQEGLFKLIHIPSTQQTADIFTKPLPPAQFN 2520
            +SA  I+ N   HERTKH+++DCH VR+++Q G   L  I S+ Q ADI TKPL P  F 
Sbjct: 1271 QSALYIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQ 1330

Query: 2521 YLISKLSMLNIHAP 2562
              + KL + N   P
Sbjct: 1331 DFVCKLGLSNFTTP 1344