BLASTX nr result
ID: Rehmannia30_contig00014218
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia30_contig00014218
(416 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADX99119.1| RNA polymerase beta II subunit, partial (chloropl... 162 6e-47
gb|ADX99127.1| RNA polymerase beta II subunit, partial (chloropl... 164 2e-46
ref|YP_009354020.1| RNA polymerase beta'' subunit (chloroplast) ... 167 4e-45
ref|YP_009353932.1| RNA polymerase beta'' subunit (chloroplast) ... 167 4e-45
ref|YP_009316303.1| RNA polymerase beta' subunit (plastid) [Cast... 167 4e-45
gb|ADX99120.1| RNA polymerase beta II subunit, partial (chloropl... 162 4e-45
ref|YP_009239189.1| RNA polymerase beta'' subunit (chloroplast) ... 166 5e-45
gb|AEM44882.1| RNA polymerase beta chain, partial (plastid) [Hyd... 162 5e-45
gb|AVK80106.1| RNA polymerase beta'' subunit (chloroplast) [Pedi... 166 7e-45
gb|AEM44881.1| RNA polymerase beta chain, partial (plastid) [Pet... 162 7e-45
gb|ADX99111.1| RNA polymerase beta II subunit, partial (chloropl... 162 1e-44
gb|PLY63929.1| hypothetical protein LSAT_4X51820 [Lactuca sativa] 158 1e-44
gb|ADX99113.1| RNA polymerase beta II subunit, partial (chloropl... 164 1e-44
ref|YP_009254205.1| RNA polymerase beta' subunit (chloroplast) [... 165 1e-44
gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Neob... 165 1e-44
gb|ADX99128.1| RNA polymerase beta II subunit, partial (chloropl... 164 1e-44
gb|ADX99125.1| RNA polymerase beta II subunit, partial (chloropl... 164 1e-44
gb|ADX99115.1| RNA polymerase beta II subunit, partial (chloropl... 164 2e-44
gb|ADX99114.1| RNA polymerase beta II subunit, partial (chloropl... 164 2e-44
ref|YP_009388760.1| RNA polymerase beta' subunit (chloroplast) [... 165 2e-44
>gb|ADX99119.1| RNA polymerase beta II subunit, partial (chloroplast) [Citharexylum
montevidense]
Length = 287
Score = 162 bits (410), Expect = 6e-47
Identities = 85/99 (85%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNE ITRILGMPW+FLI
Sbjct: 70 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNEHITRILGMPWSFLI 129
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 130 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 168
>gb|ADX99127.1| RNA polymerase beta II subunit, partial (chloroplast) [Recordia
boliviana]
Length = 404
Score = 164 bits (414), Expect = 2e-46
Identities = 86/99 (86%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNERITRILGMPW FLI
Sbjct: 272 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLI 331
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 332 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 370
>ref|YP_009354020.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia henryi]
ref|YP_009354107.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia solanifolia]
gb|AQZ40563.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia henryi]
gb|AQZ40650.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia solanifolia]
Length = 1387
Score = 167 bits (422), Expect = 4e-45
Identities = 88/99 (88%), Positives = 91/99 (91%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI
Sbjct: 1128 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 1187
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1188 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1226
>ref|YP_009353932.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia glutinosa]
gb|AQZ40475.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia glutinosa]
Length = 1394
Score = 167 bits (422), Expect = 4e-45
Identities = 88/99 (88%), Positives = 91/99 (91%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI
Sbjct: 1135 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 1194
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1195 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1233
>ref|YP_009316303.1| RNA polymerase beta' subunit (plastid) [Castilleja paramensis]
gb|ANJ04263.1| RNA polymerase beta' subunit (plastid) [Castilleja paramensis]
Length = 1394
Score = 167 bits (422), Expect = 4e-45
Identities = 88/99 (88%), Positives = 91/99 (91%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI
Sbjct: 1135 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 1194
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1195 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1233
>gb|ADX99120.1| RNA polymerase beta II subunit, partial (chloroplast) [Baillonia
amabilis]
Length = 479
Score = 162 bits (410), Expect = 4e-45
Identities = 85/99 (85%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNE ITRILGMPW+FLI
Sbjct: 330 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNEHITRILGMPWSFLI 389
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 390 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 428
>ref|YP_009239189.1| RNA polymerase beta'' subunit (chloroplast) [Pedicularis ishidoyana]
gb|AML80477.1| RNA polymerase beta'' subunit (chloroplast) [Pedicularis ishidoyana]
Length = 1351
Score = 166 bits (421), Expect = 5e-45
Identities = 87/99 (87%), Positives = 91/99 (91%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRS+DSISMNLEKRVEGWNERITRILGMPWTFLI
Sbjct: 1126 LITFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRVEGWNERITRILGMPWTFLI 1185
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1186 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1224
>gb|AEM44882.1| RNA polymerase beta chain, partial (plastid) [Hydrangea sp.
DES-2011]
Length = 495
Score = 162 bits (410), Expect = 5e-45
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +1
Query: 160 SQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAELTIVQSRISLV 339
+QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILG+PW FLIGAELTIVQSRISLV
Sbjct: 369 TQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIPWGFLIGAELTIVQSRISLV 428
Query: 340 NKIQKVYRSQGVQIHNRHIEIIVRQ 414
NKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 429 NKIQKVYRSQGVQIHNRHIEIIVRQ 453
>gb|AVK80106.1| RNA polymerase beta'' subunit (chloroplast) [Pedicularis
hallaisanensis]
Length = 1379
Score = 166 bits (420), Expect = 7e-45
Identities = 86/99 (86%), Positives = 91/99 (91%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRS+DSISMNLEKR+EGWNERITRILGMPWTFLI
Sbjct: 1128 LITFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNERITRILGMPWTFLI 1187
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1188 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1226
>gb|AEM44881.1| RNA polymerase beta chain, partial (plastid) [Petalonyx parryi]
Length = 515
Score = 162 bits (410), Expect = 7e-45
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +1
Query: 160 SQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAELTIVQSRISLV 339
+QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILG+PW FLIGAELTIVQSRISLV
Sbjct: 390 TQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIPWGFLIGAELTIVQSRISLV 449
Query: 340 NKIQKVYRSQGVQIHNRHIEIIVRQ 414
NKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 450 NKIQKVYRSQGVQIHNRHIEIIVRQ 474
>gb|ADX99111.1| RNA polymerase beta II subunit, partial (chloroplast) [Mulguraea
aspera]
Length = 534
Score = 162 bits (410), Expect = 1e-44
Identities = 85/99 (85%), Positives = 89/99 (89%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQV EVRSIDSISMNLEKRV+GWNERITRILGMPW FLI
Sbjct: 327 LITFIYEKSRSGDITQGLPKVEQVFEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLI 386
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 387 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 425
>gb|PLY63929.1| hypothetical protein LSAT_4X51820 [Lactuca sativa]
Length = 359
Score = 158 bits (400), Expect = 1e-44
Identities = 78/85 (91%), Positives = 83/85 (97%)
Frame = +1
Query: 160 SQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAELTIVQSRISLV 339
+QGLPKVEQVLEVRSIDSISMNLEKR+EGWN+ ITRILG+PW FLIGAELTIVQSRISLV
Sbjct: 118 TQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKSITRILGIPWAFLIGAELTIVQSRISLV 177
Query: 340 NKIQKVYRSQGVQIHNRHIEIIVRQ 414
NK+QKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 178 NKVQKVYRSQGVQIHNRHIEIIVRQ 202
>gb|ADX99113.1| RNA polymerase beta II subunit, partial (chloroplast) [Neosparton
ephedroides]
Length = 667
Score = 164 bits (414), Expect = 1e-44
Identities = 86/99 (86%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNERITRILGMPW FLI
Sbjct: 483 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLI 542
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 543 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 581
>ref|YP_009254205.1| RNA polymerase beta' subunit (chloroplast) [Erythranthe lutea]
gb|ANC62905.1| RNA polymerase beta' subunit (chloroplast) [Erythranthe lutea]
Length = 1376
Score = 165 bits (418), Expect = 1e-44
Identities = 87/99 (87%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW FLI
Sbjct: 1130 VITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFLI 1189
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1190 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1228
>gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Neobartsia inaequalis]
Length = 1384
Score = 165 bits (418), Expect = 1e-44
Identities = 87/99 (87%), Positives = 91/99 (91%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWN+RITRILGMPWTFLI
Sbjct: 1125 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNKRITRILGMPWTFLI 1184
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1185 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1223
>gb|ADX99128.1| RNA polymerase beta II subunit, partial (chloroplast) [Petrea
volubilis]
Length = 682
Score = 164 bits (414), Expect = 1e-44
Identities = 86/99 (86%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW F+I
Sbjct: 464 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFVI 523
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 524 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 562
>gb|ADX99125.1| RNA polymerase beta II subunit, partial (chloroplast)
[Stachytarpheta cayennensis]
Length = 683
Score = 164 bits (414), Expect = 1e-44
Identities = 86/99 (86%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNERITRILGMPW FLI
Sbjct: 470 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLI 529
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 530 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 568
>gb|ADX99115.1| RNA polymerase beta II subunit, partial (chloroplast) [Diostea
juncea]
Length = 699
Score = 164 bits (414), Expect = 2e-44
Identities = 86/99 (86%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNERITRILGMPW FLI
Sbjct: 481 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLI 540
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 541 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 579
>gb|ADX99114.1| RNA polymerase beta II subunit, partial (chloroplast) [Lampayo
castellani]
Length = 701
Score = 164 bits (414), Expect = 2e-44
Identities = 86/99 (86%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRV+GWNERITRILGMPW FLI
Sbjct: 483 LITFIYEKSRSADITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLI 542
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 543 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 581
>ref|YP_009388760.1| RNA polymerase beta' subunit (chloroplast) [Ocimum basilicum]
gb|ARU77231.1| RNA polymerase beta' subunit (chloroplast) [Ocimum basilicum]
Length = 1385
Score = 165 bits (417), Expect = 2e-44
Identities = 87/99 (87%), Positives = 90/99 (90%), Gaps = 4/99 (4%)
Frame = +1
Query: 130 IITFFQMEWQS----QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 297
+ITF + +S QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW FLI
Sbjct: 1124 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFLI 1183
Query: 298 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 414
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ
Sbjct: 1184 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1222