BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia29_contig00030589
         (1004 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...   303   1e-95
gb|PNX96445.1| copia LTR rider [Trifolium pratense]                   315   3e-94
emb|CAA37920.1| unnamed protein product, partial [Arabidopsis th...   293   2e-92
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   310   3e-92
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   299   4e-91
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   299   2e-90
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...   287   6e-89
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   300   7e-89
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   300   1e-88
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   300   1e-88
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   298   2e-88
gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]    297   5e-88
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        296   2e-87
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   290   1e-86
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   291   7e-86
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   291   3e-85
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]                        289   5e-85
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     289   5e-85
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   289   6e-85
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   289   7e-85

>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 530

 Score =  303 bits (775), Expect = 1e-95
 Identities = 164/333 (49%), Positives = 217/333 (65%), Gaps = 14/333 (4%)
 Frame = -3

Query: 966  DVHNDIENDNVELNDNEHDEFPLVDTELNH----EHAENDNLNDYVLTRDRTRRNIRVPN 799
            +V N   N +     ++  EF + D+   +    E + N       +   RTRR IR P 
Sbjct: 105  EVENLAGNKSTNKGVHQKVEFEVEDSNKENLNPVEQSSNVQEEPQSIATRRTRREIRKPT 164

Query: 798  KFADF------HMTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNT 637
            ++AD       +  +Y   V E++D+ EPK+Y +A+ S  + KWL AM +EM SL  N T
Sbjct: 165  RYADVTNVVDTNSVAYALLVGENLDSDEPKSYKEAIQSKEASKWLIAMDEEMQSLKKNQT 224

Query: 636  WELVPKPVNCSIVDCKWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKF 466
            WELVP P     V CKW+ K K+   GV   R+KARLVAKGF+QKEGIDY E+F+PVVK 
Sbjct: 225  WELVPLPRGVKPVGCKWVLKRKEGIPGVEPSRFKARLVAKGFSQKEGIDYHEVFSPVVKH 284

Query: 465  VTVRIMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLY 286
             T+R++LA+V+  D +L+QL+VK AFLHG LEE +YM QP+GF++  K NHVCLLKKSLY
Sbjct: 285  KTIRVLLAMVSALDMKLEQLNVKIAFLHGNLEEQVYMSQPDGFLEVGKKNHVCLLKKSLY 344

Query: 285  GLKQSPRQWNKKFDQCMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKA 109
            GLKQSPRQW K+FD  M+   F R++FD+C+Y  KL   S ++LL+YVDDML+       
Sbjct: 345  GLKQSPRQWYKRFDAFMISYNFVRNEFDNCVYSRKLSDGSYIYLLLYVDDMLIAAKSKTD 404

Query: 108  IDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRN 10
            ID +K  LS++F+MK LG AKKILGM I RDRN
Sbjct: 405  IDALKAMLSSEFEMKDLGTAKKILGMEIWRDRN 437


>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
          Length = 1318

 Score =  315 bits (806), Expect = 3e-94
 Identities = 165/336 (49%), Positives = 227/336 (67%), Gaps = 15/336 (4%)
 Frame = -3

Query: 966  DVHNDIENDNVELNDNEHD-EFPLVDTELN-----HEHAEN-----DNLNDYVLTRDRTR 820
            DV    E  + EL   E   E   VD EL+      E AEN     +  +DY+L+RDR+R
Sbjct: 705  DVGRSTETSDEELEQVEIPVEVEHVDAELHIPDEVEEEAENAEEVEETDDDYLLSRDRSR 764

Query: 819  RNIRVPNKFADFHMTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNN 640
            R I+ P +     + +Y       + + EP+ Y + + S N  +WL AM DEM SL+ N+
Sbjct: 765  RVIKAPQRLGYADLIAYALISASEVLDEEPRDYKEVMRSRNKTEWLKAMDDEMKSLHDNH 824

Query: 639  TWELVPKPVNCSIVDCKWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVK 469
            TWEL+ KP    +V CKW+FK+K+  EGV   RYKARLVA+GFTQKEG+D+ ++F+PVVK
Sbjct: 825  TWELIKKPAGARLVSCKWIFKVKEGIEGVTSKRYKARLVARGFTQKEGVDFNDVFSPVVK 884

Query: 468  FVTVRIMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSL 289
              ++R++LA+VAQFD EL+Q+DVKTAFL+G+L+E I MRQPEG+V+  K ++VC LK+SL
Sbjct: 885  HRSIRMLLAMVAQFDLELEQMDVKTAFLYGDLDETILMRQPEGYVERGKEDYVCKLKRSL 944

Query: 288  YGLKQSPRQWNKKFDQCMLDLKFCRSQFDHCLYFKL-DAISPVFLLIYVDDMLLTGPCIK 112
            YGLKQSPRQWN++FD+ M  + F RSQFDHC+YF+     S V LL+YVDD+L+    ++
Sbjct: 945  YGLKQSPRQWNRRFDKFMARISFIRSQFDHCVYFRFRPGNSFVILLLYVDDILIASNNVE 1004

Query: 111  AIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNS 4
             +  VK  L+ +FDMK LG A +ILG++I RDR  S
Sbjct: 1005 DVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKS 1040


>emb|CAA37920.1| unnamed protein product, partial [Arabidopsis thaliana]
          Length = 494

 Score =  293 bits (750), Expect = 2e-92
 Identities = 154/320 (48%), Positives = 206/320 (64%), Gaps = 4/320 (1%)
 Frame = -3

Query: 948 ENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFHMTSY 769
           E ++ E  D E +  P V+     E     +L +Y L RDR RR I  P +F +    ++
Sbjct: 2   EEESDESVDEEQEPEPQVELP---ETQTTSSLANYQLARDRERRQIHPPARFTEESGVAF 58

Query: 768 VFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCK 589
                E++   EP++Y +A ++    KW  A  +EM SL  N TW LV KP +  I+ C+
Sbjct: 59  ALVTVETLSMEEPQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCR 118

Query: 588 WLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWE 418
           WLFK+K    GV   RYKARLVAKG+TQ+EG+DY EIFAPV K  ++RI++++V   D E
Sbjct: 119 WLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIRILMSVVVDQDLE 178

Query: 417 LKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQC 238
           L+Q+DVKTAFLHGELEE +YM QP+GF+     N VCLLKKSLYGLKQSPRQWNK+F + 
Sbjct: 179 LEQMDVKTAFLHGELEEELYMEQPDGFISEDGENKVCLLKKSLYGLKQSPRQWNKRFSRF 238

Query: 237 MLDLKFCRSQFDHCLYFK-LDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKF 61
           M+D  F RS+ D C+Y K       ++LL+YVDDML+ G     I+ VK  LS +F+MK 
Sbjct: 239 MIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKD 298

Query: 60  LGDAKKILGMNIDRDRNNSV 1
           +G A +ILG++I RDR N V
Sbjct: 299 MGPASRILGIDIIRDRKNGV 318


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  310 bits (795), Expect = 3e-92
 Identities = 166/315 (52%), Positives = 218/315 (69%), Gaps = 10/315 (3%)
 Frame = -3

Query: 924  DNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADF------HMTSYVF 763
            D+  +E P++D        +ND+ +   +   R RR IR P ++ D       +  ++  
Sbjct: 855  DDTSEEQPVID--------QNDSQS---IAAHRPRREIRRPMRYVDCVSANITNPVAFAL 903

Query: 762  SVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWL 583
            +V E I   EP++Y +A+ S +S KWLS+M DEM SL  N TWELVP P     VDCKWL
Sbjct: 904  AVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWL 963

Query: 582  FKIKQ---ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELK 412
            FKIK     +E  +YK+RLVAKGF+QKEGIDY E+F+PVVK  ++R++LA+V+ F+ EL 
Sbjct: 964  FKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELD 1023

Query: 411  QLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQCML 232
            QLDVKTAFLHG LEE IYM+QPEGFVDS+K +HVC LKKSLYGLKQSPRQW K+FD  M+
Sbjct: 1024 QLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMV 1083

Query: 231  DLKFCRSQFDHCLYFK-LDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLG 55
              +F R+Q+D C+YFK L   S ++LL+YVDDML+       I+ +K  LS++F+MK LG
Sbjct: 1084 SHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLG 1143

Query: 54   DAKKILGMNIDRDRN 10
             AKKILGM I RDR+
Sbjct: 1144 AAKKILGMEIWRDRD 1158


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  299 bits (766), Expect = 4e-91
 Identities = 149/317 (47%), Positives = 206/317 (64%), Gaps = 3/317 (0%)
 Frame = -3

Query: 942  DNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFHMTSYVF 763
            +  E +D   ++ P    E +       +L +Y L +DR RR I  P +F +    ++  
Sbjct: 447  EECEESDENDEQEPETVNETDPTVESEGSLANYQLAKDRVRRQINPPARFTEESGVAFAL 506

Query: 762  SVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWL 583
             V ES+   EP++Y +A      +KW +A  +EM SL  N TW+LV KP N  I+ C+WL
Sbjct: 507  VVVESLSLEEPESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWL 566

Query: 582  FKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELK 412
            FK+K    GV   R+KARLVAKG+TQ+EG+DY EIFAPVVK  ++R+++++V   D EL+
Sbjct: 567  FKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQEIFAPVVKHTSIRVLMSVVVDQDMELE 626

Query: 411  QLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQCML 232
            Q+DVKTAFLHG+LEE +YM QPEGF+  K  + VCLLKKSLYGLKQSPRQWNK+F + M+
Sbjct: 627  QMDVKTAFLHGDLEEELYMEQPEGFITDKTKDKVCLLKKSLYGLKQSPRQWNKRFGRFMM 686

Query: 231  DLKFCRSQFDHCLYFKLDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGD 52
            + KF RS  D C+Y K      V+LL+YVDDML+ G     ++ +K  LS +F+MK +G 
Sbjct: 687  EQKFIRSAHDACVYVKQVEQGFVYLLLYVDDMLIAGKSKAEVNMIKEQLSVEFEMKDMGP 746

Query: 51   AKKILGMNIDRDRNNSV 1
            A +ILG +I RDR   +
Sbjct: 747  ASRILGKDITRDRKKGI 763


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  299 bits (765), Expect = 2e-90
 Identities = 151/289 (52%), Positives = 204/289 (70%), Gaps = 4/289 (1%)
 Frame = -3

Query: 855  LNDYVLTRDRTRRNIRVPNKFADFHMTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSA 676
            L +Y LTRD  RR+IR P +F    M +Y  S+ E +  +EPK YL+A++  +S KW++A
Sbjct: 417  LENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAISCKDSPKWMTA 476

Query: 675  MQDEMTSLYVNNTWELVPKPVNCSIVDCKWLFKIK---QENEGVRYKARLVAKGFTQKEG 505
            MQ+E  SL  N TW+LV KP  C +V CKW+FK K      E  R+KA LVAK +TQ+EG
Sbjct: 477  MQEEFESLLKNGTWQLVDKPKGCKVVGCKWVFKKKLGIPHVEPERFKATLVAKAYTQREG 536

Query: 504  IDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSK 325
            +D+ EIF+P+VK  ++R++LALV+ ++ EL Q+DV  AFLHGELEE I+M+QP+GF+   
Sbjct: 537  MDFNEIFSPMVKHTSIRVLLALVSLWNLELXQMDVNRAFLHGELEEEIFMQQPKGFIVKG 596

Query: 324  KPNHVCLLKKSLYGLKQSPRQWNKKFDQCMLDLKFCRSQFDHCLYF-KLDAISPVFLLIY 148
            K N VCLLK+SLYGLKQSPRQW K+FD+ M  + + RS+FD+C+Y  KL   S V+LL+Y
Sbjct: 597  KENQVCLLKRSLYGLKQSPRQWYKRFDKFMTSVGYSRSKFDNCVYMRKLTNGSYVYLLLY 656

Query: 147  VDDMLLTGPCIKAIDHVKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 1
            VDDMLL    I  I H+K  L ++F+MK LG AKKILG+   RDR+  +
Sbjct: 657  VDDMLLASKSITEIAHLKTQLQSEFEMKDLGCAKKILGIEPYRDRSTGI 705


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment)
 emb|CAA37917.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 587

 Score =  287 bits (734), Expect = 6e-89
 Identities = 152/320 (47%), Positives = 204/320 (63%), Gaps = 4/320 (1%)
 Frame = -3

Query: 948 ENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFHMTSY 769
           E ++ E  + E +  P V+           +L  Y L +DR RR I  P +F +    ++
Sbjct: 1   EEESDETVEEEQEPEPQVELPKTQT---TSSLAYYQLAKDRERREIHPPARFTEESGVAF 57

Query: 768 VFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCK 589
                E++   EP++Y +A +     KW  A  +EM SL  N TW LV KP +  I+ C+
Sbjct: 58  ALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQDRKIIGCR 117

Query: 588 WLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWE 418
           WLFK+K    GV   RYKARLVAKG+TQ+EG+DY EIFAPVVK   +RI++++V   D E
Sbjct: 118 WLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVVKHTFIRILMSVVVDQDLE 177

Query: 417 LKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQC 238
           L+Q+DVKTAFLHGELEE +YM QPEGF+     N VCLLKK LYGLKQSPRQWNK+F++ 
Sbjct: 178 LEQMDVKTAFLHGELEEELYMEQPEGFISEDGKNKVCLLKKLLYGLKQSPRQWNKRFNRF 237

Query: 237 MLDLKFCRSQFDHCLYFK-LDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKF 61
           M+D  F RS+ D C+Y K +     ++LL+YVDDML+ G     I+ VK  LS +F+MK 
Sbjct: 238 MIDQNFIRSEHDACVYVKQVTEQEHLYLLLYVDDMLIAGKNKSEINKVKEQLSMEFEMKD 297

Query: 60  LGDAKKILGMNIDRDRNNSV 1
           +G A +ILG++I RDR N V
Sbjct: 298 MGPASRILGIDIIRDRKNGV 317


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  300 bits (767), Expect = 7e-89
 Identities = 157/318 (49%), Positives = 215/318 (67%), Gaps = 5/318 (1%)
 Frame = -3

Query: 951  IENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRR-NIRVPNKFADFHMT 775
            I+N++      E D+ P  +T++      + + +   + +DR RR  +R P ++    M 
Sbjct: 720  IQNESDLKEPEEEDQEPQTETDIPESMPSDIHQS---IAQDRPRRVGVRPPTRYGFEDMV 776

Query: 774  SYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVD 595
             Y   V E +D SEP TY +A+ S +S KW +AM DEM SL+ N TW+LV +P    I+ 
Sbjct: 777  GYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIIT 836

Query: 594  CKWLFKIKQ---ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFD 424
            CKW+FK K+     EGV+YKAR+VA+GF Q+EG+DY EIF+PVV+  ++R++LA+VA  +
Sbjct: 837  CKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQN 896

Query: 423  WELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFD 244
             EL+QLDVKTAFLHGELEE IYM QP+GF    K NHVC LKKSLYGLKQSPRQW K+FD
Sbjct: 897  LELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFD 956

Query: 243  QCMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDM 67
              M+ L + RS +D C+Y+ +L+  S ++L++YVDDML+       I  +K  LSA+F+M
Sbjct: 957  SYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEM 1016

Query: 66   KFLGDAKKILGMNIDRDR 13
            K LG A+KILGM I RDR
Sbjct: 1017 KDLGAARKILGMEIIRDR 1034


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  300 bits (769), Expect = 1e-88
 Identities = 164/317 (51%), Positives = 214/317 (67%), Gaps = 4/317 (1%)
 Frame = -3

Query: 951  IENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFHMTS 772
            +++D VE+ D++ DE P                  Y +   RT+R I+   ++A+  + S
Sbjct: 1245 VQDDQVEVQDSDEDESP--------------QEKPYSIATGRTKRQIKPNPRYAN--LVS 1288

Query: 771  YVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDC 592
            +  SV ESI   EP +Y +AV    S +W  AM +E+ SL+ N+TWELV  P N  IV C
Sbjct: 1289 FALSVAESI-GIEPSSYNEAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGC 1347

Query: 591  KWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDW 421
            KW+FK K+   GV   R+KARLVAKGFTQKEGIDY E+F+PVVK  ++R++LA+VA+ D 
Sbjct: 1348 KWVFKKKEGILGVEATRFKARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDL 1407

Query: 420  ELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQ 241
            EL+QLDVKTAFLHGELEE IYMRQPEGF    K +HVCLLKKSLYGLKQSPRQW K+FD 
Sbjct: 1408 ELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDS 1467

Query: 240  CMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMK 64
             M+   + R  +D C+Y  KL   S ++LL+YVDDML+    +  I+ +K+ LS +F+MK
Sbjct: 1468 FMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASKNMSEINKLKSQLSGEFEMK 1527

Query: 63   FLGDAKKILGMNIDRDR 13
             LG AKKILGM+I RDR
Sbjct: 1528 DLGAAKKILGMDIHRDR 1544


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  300 bits (769), Expect = 1e-88
 Identities = 164/317 (51%), Positives = 214/317 (67%), Gaps = 4/317 (1%)
 Frame = -3

Query: 951  IENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFHMTS 772
            +++D VE+ D++ DE P                  Y +   RT+R I+   ++A+  + S
Sbjct: 1266 VQDDQVEVQDSDEDESP--------------QEKPYSIATGRTKRQIKPNPRYAN--LVS 1309

Query: 771  YVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDC 592
            +  SV ESI   EP +Y +AV    S +W  AM +E+ SL+ N+TWELV  P N  IV C
Sbjct: 1310 FALSVAESI-GIEPSSYNEAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGC 1368

Query: 591  KWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDW 421
            KW+FK K+   GV   R+KARLVAKGFTQKEGIDY E+F+PVVK  ++R++LA+VA+ D 
Sbjct: 1369 KWVFKKKEGILGVEATRFKARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDL 1428

Query: 420  ELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQ 241
            EL+QLDVKTAFLHGELEE IYMRQPEGF    K +HVCLLKKSLYGLKQSPRQW K+FD 
Sbjct: 1429 ELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDS 1488

Query: 240  CMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMK 64
             M+   + R  +D C+Y  KL   S ++LL+YVDDML+    +  I+ +K+ LS +F+MK
Sbjct: 1489 FMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASKNMSEINKLKSQLSGEFEMK 1548

Query: 63   FLGDAKKILGMNIDRDR 13
             LG AKKILGM+I RDR
Sbjct: 1549 DLGAAKKILGMDIHRDR 1565


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  298 bits (764), Expect = 2e-88
 Identities = 156/324 (48%), Positives = 210/324 (64%), Gaps = 7/324 (2%)
 Frame = -3

Query: 951  IENDNVELNDNEHD---EFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFH 781
            +++D+  + + E     E  +  +E   E  +   L  Y L RDR RRNI  P +F +  
Sbjct: 763  LQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEES 822

Query: 780  MTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSI 601
              ++   V E+    EP++Y +A+ S +  KW  A  DEM SL  N TW+LV KP +  I
Sbjct: 823  SVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKI 882

Query: 600  VDCKWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQ 430
            + C+WLFK+K    GV   R+KARLVAKG+TQ+EG+DY EIFAPVVK V++RI+++LV  
Sbjct: 883  IGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVD 942

Query: 429  FDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKK 250
             D EL+Q+DVKT FLHG+LEE +YM QPEGFV     N VC LKKSLYGLKQSPRQWNK+
Sbjct: 943  KDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKR 1002

Query: 249  FDQCMLDLKFCRSQFDHCLYFK-LDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKF 73
            FD+ M   +F RS+ D C+Y K +     ++LL+YVDDML+ G     I+ VK  LS +F
Sbjct: 1003 FDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEF 1062

Query: 72   DMKFLGDAKKILGMNIDRDRNNSV 1
            +MK +G A +ILG++I RDR   V
Sbjct: 1063 EMKDMGGASRILGIDIYRDRKGGV 1086


>gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1308

 Score =  297 bits (761), Expect = 5e-88
 Identities = 162/330 (49%), Positives = 218/330 (66%), Gaps = 5/330 (1%)
 Frame = -3

Query: 975  NANDVHNDIENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNK 796
            N  DV  ++E+D ++ +D E  E P        E + +     Y + ++R RR I+ P +
Sbjct: 717  NKEDVQIEVESDGMKNSDEE--EMP--------ESSSHGQSPGYSIAKERPRRQIKPPLR 766

Query: 795  FADFH-MTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPK 619
            F D   +++YVF   E  D++EP TY +A+ S +S +W  AMQ+EM SL+ N TW LV K
Sbjct: 767  FRDEEDISAYVFMAAELEDSTEPLTYNEAIASEDSERWQVAMQEEMDSLHKNQTWVLVDK 826

Query: 618  PVNCSIVDCKWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIM 448
            P    IV CKW+FK+K+   GV   RYKARLVAKGFTQ+ GIDY E+F+PVVK  ++R++
Sbjct: 827  PKGQKIVTCKWIFKLKEGIPGVEGPRYKARLVAKGFTQRAGIDYNEVFSPVVKHSSIRVI 886

Query: 447  LALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSP 268
            L+L A    EL+QLDVKTAFLHG L+E I M QP+GFV   + + VCLLK+SLYGLKQSP
Sbjct: 887  LSLTAVMGMELEQLDVKTAFLHGYLDEEILMNQPQGFVKKGEEDKVCLLKRSLYGLKQSP 946

Query: 267  RQWNKKFDQCMLDLKFCRSQFDHCLYFKLDAISP-VFLLIYVDDMLLTGPCIKAIDHVKN 91
            RQW K+FD+ M+   F RS +D C+YFK       V+LL+YVDDML+     + I + K+
Sbjct: 947  RQWYKRFDEYMVSNSFKRSSYDACVYFKEYCPGKYVYLLLYVDDMLVACQDSEEIRNTKD 1006

Query: 90   CLSAKFDMKFLGDAKKILGMNIDRDRNNSV 1
             L A+FDMK LG+AKKILGM I RD+   +
Sbjct: 1007 LLMAEFDMKELGEAKKILGMEITRDKGRGI 1036


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  296 bits (757), Expect = 2e-87
 Identities = 156/332 (46%), Positives = 211/332 (63%), Gaps = 7/332 (2%)
 Frame = -3

Query: 984  DPVNANDVHNDIENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRV 805
            D  +  +  +D E    E  ++E  E P  D            L +Y L RDR RR +R 
Sbjct: 742  DKSSEKEAASDDERATAESEEHEVSELPQAD------------LQNYQLARDRVRREVRA 789

Query: 804  PNKFADFHMTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELV 625
            P ++    + +Y     + +   EP  + +A+ SV+  KWL AMQDEM SL  N TW L+
Sbjct: 790  PVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLI 849

Query: 624  PKPVNCSIVDCKWLFKIKQENEGV------RYKARLVAKGFTQKEGIDYTEIFAPVVKFV 463
            P P N  +++CKW+FK    NEG+      +YKARLVA+GFTQ+EG+D+ EIF+PVVK  
Sbjct: 850  PNPGNKRLINCKWIFK---RNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHS 906

Query: 462  TVRIMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYG 283
            ++RI+LA+VA  D EL+Q+DVKTAFLHG LEE I M QPEGF    K ++VCLL KSLYG
Sbjct: 907  SIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYG 966

Query: 282  LKQSPRQWNKKFDQCMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAI 106
            LKQSPRQW ++FD  M+   + RS++D C+YF   D     +LL+YVDDML+       I
Sbjct: 967  LKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEI 1026

Query: 105  DHVKNCLSAKFDMKFLGDAKKILGMNIDRDRN 10
            + +KN L A+F+MK LG+AK+ILGM+I RDR+
Sbjct: 1027 ERLKNLLKAEFEMKDLGNAKRILGMDIIRDRS 1058


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  290 bits (743), Expect = 1e-86
 Identities = 157/314 (50%), Positives = 211/314 (67%), Gaps = 5/314 (1%)
 Frame = -3

Query: 939  NVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPNKFADFHMTSYVFS 760
            NV++  +   E  + D   +H   + +   +Y + RDRTRR I++P ++ D ++T+Y  S
Sbjct: 444  NVDVPSSSTTESSIDDHGDDHPIQQQE---EYNIARDRTRRQIKLPARYTDDNLTAYALS 500

Query: 759  VFESI-DNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIVDCKWL 583
            + + + D+ EP +Y +AV+ V+S KWL AM +E+ SL+ NNTW L   P     + CKW+
Sbjct: 501  IAQEVNDDVEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWI 560

Query: 582  FKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELK 412
            +K K    GV   R KARLV KGF QKEGID+ EIF+PVV+  ++RI+LA VA FD EL+
Sbjct: 561  YKKKDGIPGVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELE 620

Query: 411  QLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKFDQCML 232
            QLDVKTAFLHGELEE IYM QPEGFV   K + VC LKKSLYGLKQ+PRQW KKFD  M+
Sbjct: 621  QLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMI 680

Query: 231  DLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFDMKFLG 55
               + RS++D C+YF +    + ++LL+YVDDML+       I  +K  L+ +F+MK LG
Sbjct: 681  GQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELG 740

Query: 54   DAKKILGMNIDRDR 13
             AKKILGM I RDR
Sbjct: 741  AAKKILGMEIHRDR 754


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  291 bits (746), Expect = 7e-86
 Identities = 153/329 (46%), Positives = 212/329 (64%), Gaps = 4/329 (1%)
 Frame = -3

Query: 984  DPVNANDVHNDIENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRV 805
            +P  A   HN + N      D E +E          +    ++L+ Y L RDR RR I+ 
Sbjct: 742  NPSEATTSHNPVLNSPTHSQDEESEE---------EDSDAVEDLSTYQLVRDRVRRTIKA 792

Query: 804  PNKFADFHMTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELV 625
              K+ + +M  + +   E     EPK+Y +A+   +  KW +AM++EM S+  N+TW+LV
Sbjct: 793  NPKYNESNMVGFAY-YSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLV 851

Query: 624  PKPVNCSIVDCKWLFKIKQENEGV---RYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVR 454
             KP    ++ C+W+F  K    GV   R+ ARLVAKGFTQKEG+DY EIF+PVVK V++R
Sbjct: 852  TKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIR 911

Query: 453  IMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQ 274
             +L++V  ++ EL+Q+DVKTAFLHG LEE IYM QPEGF   +  N VCLLK+SLYGLKQ
Sbjct: 912  YLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQ 971

Query: 273  SPRQWNKKFDQCMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAIDHV 97
            SPRQWN +FD+ M  +K+ RS +D C+YF K +  + ++LL+YVDDML+       ++ +
Sbjct: 972  SPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNEL 1031

Query: 96   KNCLSAKFDMKFLGDAKKILGMNIDRDRN 10
            K  LS +F+MK LGDAKKILGM I RDR+
Sbjct: 1032 KQLLSREFEMKDLGDAKKILGMEISRDRD 1060


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  291 bits (744), Expect = 3e-85
 Identities = 157/318 (49%), Positives = 206/318 (64%), Gaps = 15/318 (4%)
 Frame = -3

Query: 924  DNEHDEFPLVDTELNHEHAENDNLND---------YVLTRDRTRRNIRVPNKFADFH--M 778
            +NE  E P+  T+   +  ++D   D         Y + + R +R IR P +  +    +
Sbjct: 1303 NNEQVELPVELTKKRDQETQSDESKDAEELASNEPYTIAKGRDKRRIRKPERLIEQENLI 1362

Query: 777  TSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVPKPVNCSIV 598
                 +  E I + EP +Y++A +  ++ +W  AM +EM SL+ N TW LV +P     V
Sbjct: 1363 AQAFVAAEEEIKDLEPSSYIEATSCKDAAQWQLAMMEEMESLHRNETWVLVKRPKGMRTV 1422

Query: 597  DCKWLFKIKQ---ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQF 427
             CKW++K K+   E E  R+KARLVAKGF+QKEGIDY EIF+PVVK  ++R++LALVAQF
Sbjct: 1423 GCKWVYKKKEGIPEVEAARFKARLVAKGFSQKEGIDYNEIFSPVVKHSSIRVLLALVAQF 1482

Query: 426  DWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQSPRQWNKKF 247
            D EL+QLDVKTAFLHG+LEE IYM QPEGF+   K +HVC LKKSLYGLKQSPRQW K+F
Sbjct: 1483 DLELQQLDVKTAFLHGDLEETIYMDQPEGFLAEGKEDHVCQLKKSLYGLKQSPRQWYKRF 1542

Query: 246  DQCMLDLKFCRSQFDHCLYF-KLDAISPVFLLIYVDDMLLTGPCIKAIDHVKNCLSAKFD 70
            D  M    F RS FD C+Y  K+   S ++LL+YVDDML+    I  I+ +K  LS +FD
Sbjct: 1543 DAFMTTHGFSRSAFDSCVYHKKMSGNSMIYLLLYVDDMLIAANNITEINILKKLLSKEFD 1602

Query: 69   MKFLGDAKKILGMNIDRD 16
            MK LG AKKILGM I R+
Sbjct: 1603 MKDLGVAKKILGMEISRE 1620


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
          Length = 1335

 Score =  289 bits (740), Expect = 5e-85
 Identities = 155/333 (46%), Positives = 213/333 (63%), Gaps = 5/333 (1%)
 Frame = -3

Query: 984  DPVNANDVHNDIENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRV 805
            +PV+  D HN     N   +D+ HD+       L  E        D  + + +++R  + 
Sbjct: 745  EPVDEQDDHN-----NDVADDDAHDDVQQTPPILQLEE-------DLSIAQRKSKRTTKP 792

Query: 804  PNKFAD-FHMTSYVFSVFESIDN-SEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWE 631
            P +  +  +++ Y  S  E ++N  EP TY +AV   +S  W+SAM +EM SL  N+TWE
Sbjct: 793  PKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWE 852

Query: 630  LVPKPVNCSIVDCKWLFKIKQE---NEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVT 460
            +VP P     + CKW+FK K+    +E  +YKARLVA+G++Q  G+DY ++F+PVVK  +
Sbjct: 853  VVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSS 912

Query: 459  VRIMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGL 280
            +R  L++VA  D EL+QLDVKTAFLHGELEE+IYM QPEGF+   K  +VC LK+SLYGL
Sbjct: 913  IRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGL 972

Query: 279  KQSPRQWNKKFDQCMLDLKFCRSQFDHCLYFKLDAISPVFLLIYVDDMLLTGPCIKAIDH 100
            KQSPRQWNK+FD  ML   F RS++D C+Y K    SP++LL+YVDDML+       I  
Sbjct: 973  KQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITK 1032

Query: 99   VKNCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 1
            +K  LS++FDMK LG AKKILGM I RDR + +
Sbjct: 1033 LKKLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1065


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  289 bits (739), Expect = 5e-85
 Identities = 155/328 (47%), Positives = 214/328 (65%), Gaps = 12/328 (3%)
 Frame = -3

Query: 957  NDIENDNVELNDNEHDEFPLV--DTELNHEHAENDNLNDYV------LTRDRTRRNIRVP 802
            N+  ND V + + EH + P V    E + +  +N  +          +  D+ +RN +  
Sbjct: 701  NEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNSPIPQAPESFKRSIALDKPKRNRKPI 760

Query: 801  NKFADFHMTSYVFSVFESIDNSEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELVP 622
             +F  F     V     SI   +P TY DA+ SV S  W+ AM +EM SL+ N+ WELVP
Sbjct: 761  QRFG-FEPEEDVSRAL-SISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVP 818

Query: 621  KPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVRI 451
            KP    +V CKW+F+ K+   E++ + YKARLVAKG++QKEG+DY EIF+PVVK  ++R+
Sbjct: 819  KPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRL 878

Query: 450  MLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQS 271
            +L++ AQ+D E++Q+DVKTAFLHG+LEE+IYM QPEGFV++ K N VC LKKSLYGLKQS
Sbjct: 879  LLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQS 938

Query: 270  PRQWNKKFDQCMLDLKFCRSQFDHCLYFKL-DAISPVFLLIYVDDMLLTGPCIKAIDHVK 94
            PRQW K FD  ML + + R Q+D C+Y+ + +    + LL+YVDDML+    +  I  +K
Sbjct: 939  PRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLK 998

Query: 93   NCLSAKFDMKFLGDAKKILGMNIDRDRN 10
              L A+FDMK LG A+KILG+ I RDRN
Sbjct: 999  KKLGAEFDMKDLGAAQKILGIEIRRDRN 1026


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  289 bits (739), Expect = 6e-85
 Identities = 152/331 (45%), Positives = 212/331 (64%), Gaps = 5/331 (1%)
 Frame = -3

Query: 978  VNANDVHNDIENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPN 799
            V    VH   +++N   +D+ HD+       L  E        +  + + +++R  + P 
Sbjct: 740  VQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEE-------ELPIAQRKSKRTTKPPK 792

Query: 798  KFAD-FHMTSYVFSVFESIDN-SEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELV 625
            +  +  +++ Y  S  E ++N  EP TY +AV   +S  W+SAM +EM SL  N+TWE+V
Sbjct: 793  RLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVV 852

Query: 624  PKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVR 454
            P P     + CKW+FK K+    +E  +YKARLVA+G++Q  G+DY ++F+PVVK  ++R
Sbjct: 853  PLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIR 912

Query: 453  IMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQ 274
              L++VA  D EL+QLDVKTAFLHGELEE+IYM QPEGF+   K  +VC LK+SLYGLKQ
Sbjct: 913  TFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQ 972

Query: 273  SPRQWNKKFDQCMLDLKFCRSQFDHCLYFKLDAISPVFLLIYVDDMLLTGPCIKAIDHVK 94
            SPRQWNK+FD  ML   F RS++D C+Y K    SP++LL+YVDDML+       I  +K
Sbjct: 973  SPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITKLK 1032

Query: 93   NCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 1
              LS++FDMK LG AKKILGM I RDR + +
Sbjct: 1033 KLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1063


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  289 bits (739), Expect = 7e-85
 Identities = 152/331 (45%), Positives = 212/331 (64%), Gaps = 5/331 (1%)
 Frame = -3

Query: 978  VNANDVHNDIENDNVELNDNEHDEFPLVDTELNHEHAENDNLNDYVLTRDRTRRNIRVPN 799
            V    VH   +++N   +D+ HD+       L  E        +  + + +++R  + P 
Sbjct: 740  VQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEE-------ELPIAQRKSKRTTKPPK 792

Query: 798  KFAD-FHMTSYVFSVFESIDN-SEPKTYLDAVNSVNSVKWLSAMQDEMTSLYVNNTWELV 625
            +  +  +++ Y  S  E ++N  EP TY +AV   +S  W+SAM +EM SL  N+TWE+V
Sbjct: 793  RLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVV 852

Query: 624  PKPVNCSIVDCKWLFKIKQ---ENEGVRYKARLVAKGFTQKEGIDYTEIFAPVVKFVTVR 454
            P P     + CKW+FK K+    +E  +YKARLVA+G++Q  G+DY ++F+PVVK  ++R
Sbjct: 853  PLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIR 912

Query: 453  IMLALVAQFDWELKQLDVKTAFLHGELEENIYMRQPEGFVDSKKPNHVCLLKKSLYGLKQ 274
              L++VA  D EL+QLDVKTAFLHGELEE+IYM QPEGF+   K  +VC LK+SLYGLKQ
Sbjct: 913  TFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQ 972

Query: 273  SPRQWNKKFDQCMLDLKFCRSQFDHCLYFKLDAISPVFLLIYVDDMLLTGPCIKAIDHVK 94
            SPRQWNK+FD  ML   F RS++D C+Y K    SP++LL+YVDDML+       I  +K
Sbjct: 973  SPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITKLK 1032

Query: 93   NCLSAKFDMKFLGDAKKILGMNIDRDRNNSV 1
              LS++FDMK LG AKKILGM I RDR + +
Sbjct: 1033 KLLSSEFDMKDLGSAKKILGMEISRDRKSGL 1063