BLASTX nr result
ID: Rehmannia28_contig00051771
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00051771
(858 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposo... 303 e-100
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 322 9e-98
gb|KYP40443.1| Retrovirus-related Pol polyprotein from transposo... 301 2e-96
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo... 311 2e-94
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 310 4e-93
gb|KYP40244.1| Retrovirus-related Pol polyprotein from transposo... 298 9e-93
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo... 299 4e-92
gb|KYP38387.1| Retrovirus-related Pol polyprotein from transposo... 293 5e-92
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo... 297 7e-92
gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposo... 290 1e-91
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo... 303 4e-91
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo... 303 5e-91
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 303 6e-91
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo... 303 7e-91
gb|KYP65286.1| Retrovirus-related Pol polyprotein from transposo... 296 9e-91
gb|KYP51497.1| Retrovirus-related Pol polyprotein from transposo... 296 1e-90
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 302 2e-90
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo... 298 2e-90
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 300 1e-89
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo... 299 2e-89
>gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 302
Score = 303 bits (775), Expect = e-100
Identities = 144/281 (51%), Positives = 192/281 (68%), Gaps = 1/281 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LG+P + + K QCNIP V FC +C+ K H+LP + S L+L+++DL
Sbjct: 16 LGNPKFHVQKLVSQQCNIPVVNKIDGFFCNACYMGKAHRLPSNLSDLVYKNPLELVYSDL 75
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+P+ S N +KYY+SF++++ FTWIYLL+ K DT F FK +VE QFNTS+KS+Q
Sbjct: 76 WGPAPIQSSNNYKYYLSFVNAYPCFTWIYLLQNKFDTLTVFKQFKMMVELQFNTSLKSLQ 135
Query: 362 TDGGGEFIA-LANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
TD GGEFI L G+ HR+ CP+TP QNG+ ERKHR+IVE+ L+L S ++LPLK+
Sbjct: 136 TDWGGEFIIPLPKYLKDLGVNHRVICPHTPHQNGVIERKHRHIVELGLTL-SHASLPLKF 194
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
WD F +AVYLINR P+ L + PY +L P+Y+ LKTFGC CFPLL+PYNKHKL+
Sbjct: 195 WDSTFCTAVYLINRLPTASLKYVVPYTILFKQSPDYTFLKTFGCACFPLLRPYNKHKLDF 254
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
+S F+GYS HKGY+ L P KI S+ V+FNE+ FP+
Sbjct: 255 RSHECVFLGYSTSHKGYKCLSPIGKIFISKDVVFNEYRFPY 295
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 322 bits (826), Expect = 9e-98
Identities = 150/280 (53%), Positives = 199/280 (71%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHPS IV L +CN+P + + C C K+HK F S K L+LIHTDL
Sbjct: 511 LGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDL 570
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+ PS +G +YY+ FID+++RFTWIY+LK KS+ FLHFK+ VE Q IK++Q
Sbjct: 571 WGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQ 630
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
+D GGE+ + + GIIHR+SCPYT +QNGLAERKHR+IVE ++L++Q++LP KYW
Sbjct: 631 SDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYW 690
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
DEAF ++VYLINR P+ +L KSP E+L KP+YS LK FGC+C+P L+P+N HKL+ +
Sbjct: 691 DEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFR 750
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
S+P TF+GYS HKGY+ L PN I+ SR VIF+E +FPF
Sbjct: 751 SIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAFPF 790
>gb|KYP40443.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 488
Score = 301 bits (770), Expect = 2e-96
Identities = 139/283 (49%), Positives = 193/283 (68%), Gaps = 1/283 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPF-VVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
LGHP +D + +AL CNI VN+ + FC SC +K H+LP S K L+L+ D
Sbjct: 4 LGHPHHDSLTKALQTCNIRLPTVNKISDFCDSCCIAKSHRLPSQPSTTIYSKPLELVFLD 63
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+WGP+ + S G+ Y+++ +D+ T++ WIYLL+ KSD + F +FKAL E QF T +K +
Sbjct: 64 VWGPASLESSCGYLYFLTCVDACTKYVWIYLLRRKSDVSSNFQNFKALAEKQFQTPLKFV 123
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
QTDGGGEF L F GI+HR++CPYT QNG ER+HR+IVE+ L+++ S LPL +
Sbjct: 124 QTDGGGEFRTLIPFFQQEGILHRLTCPYTHHQNGTVERRHRHIVELGLAMLHHSALPLNF 183
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
WD AF +A YLINR PS + F+SPY+L+ P+Y+ LK FGC CFPLL+PYN+HK++P
Sbjct: 184 WDHAFLTATYLINRLPSSSVGFQSPYKLIHNKDPDYAFLKIFGCSCFPLLRPYNQHKIQP 243
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFTN 847
+S F+GYSP HKGY+ L + +I S+ VIFNE FP+ +
Sbjct: 244 RSEECVFLGYSPSHKGYKCLSRSGRIYISKDVIFNEGRFPYND 286
>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1165
Score = 311 bits (796), Expect = 2e-94
Identities = 145/280 (51%), Positives = 192/280 (68%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP+ ++ + CNI E +FC +C K H LPF S + LDL+H+D+
Sbjct: 371 LGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDV 430
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+P+ S +GFKYYV F+D +RFTWIY LK KSD AF+ F+ LVENQFN IK++Q
Sbjct: 431 WGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQ 490
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
DGGGEF +L+ GI R SCPYT QNG AERKHR++VE L+L++Q+ +PL YW
Sbjct: 491 CDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYW 550
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
EAF++AV+LINR P++++ KSPY+ L P+Y+ +KTFGC C+P LKPYN+HKL+
Sbjct: 551 WEAFSTAVFLINRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFH 610
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
+ F+GYS HKGY+ L +I SRHV+FNEH FPF
Sbjct: 611 TTKCVFLGYSGSHKGYKCLNSTGRIFISRHVVFNEHHFPF 650
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 310 bits (793), Expect = 4e-93
Identities = 143/281 (50%), Positives = 198/281 (70%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHPS +K L++CN+ + + FC SC K+H+ PFS SH K L+LIH DL
Sbjct: 528 LGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHLDL 587
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+ V S++G++YY+ F+D+ +RF+WI+LL+ KS+ F++FK VE QF+ IKS+Q
Sbjct: 588 WGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKSLQ 647
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
TD GGEF A + + GI+HR+SCP+T QQNG+AERKHR IVE L+L+ ++LPLK+W
Sbjct: 648 TDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFW 707
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
DE+F + VYL NR P+ +L+ K P E+L P+YS LK FGC CFP L+PYN HKL+ +
Sbjct: 708 DESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYR 767
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFT 844
S TF+GYS +HKGY+ + N ++ S VIFNE SFP++
Sbjct: 768 SEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPYS 808
>gb|KYP40244.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 720
Score = 298 bits (762), Expect = 9e-93
Identities = 139/282 (49%), Positives = 192/282 (68%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP+ ++K LTQCN+ +FC SC+ K H+LP S S LDLI TDL
Sbjct: 437 LGHPNSHVLKLVLTQCNLLPSNTYVTEFCSSCYVGKSHRLPSSASQTVYSAPLDLIFTDL 496
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGPS + S +G+ YYV+FID+ +++TW+Y LK+K++T + F FKA+ E QFNT IKS+Q
Sbjct: 497 WGPSHITSFSGYIYYVAFIDAFSKYTWVYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQ 556
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
+D GG + A + + GI HR+ CP+T QNG+ ERKHR+IVE+ L+L+ ++LPL++W
Sbjct: 557 SDWGGVYQAFTSFLATNGIEHRLICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLQFW 616
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D FT+A+YLINR PS LNF P+ +L P+Y L+TFGC CFP L+P HKL +
Sbjct: 617 DFTFTTAIYLINRFPSAALNFDVPFTVLFNKSPDYKFLRTFGCACFPFLRPCASHKLHFR 676
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFTN 847
S F+GYS HKGY+ L +++I S+ VIFNEH FP+T+
Sbjct: 677 SQECVFLGYSNSHKGYKCLSSSSRIYISKDVIFNEHRFPYTD 718
>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 839
Score = 299 bits (765), Expect = 4e-92
Identities = 135/280 (48%), Positives = 191/280 (68%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP D++K CN P + + FC SC K HKLP S + +LI++DL
Sbjct: 156 LGHPHNDVLKSVFKLCNFPNINKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDL 215
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+PV S NG++YYV+F+D+HTRFTWI++LK+K+ T + F F A+V NQF IK++Q
Sbjct: 216 WGPAPVLSDNGYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFKQFHAMVRNQFQLPIKAIQ 275
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
TD GGEF + + + +GI HR+ CP+T QNG+ ERKHR+IVE+ L+L++Q++LP+ +W
Sbjct: 276 TDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVELGLTLLAQAHLPMHFW 335
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D AF ++VYLINR PS + P+ L H P+Y+ L+ FGC CFP L+PYNK KL+ +
Sbjct: 336 DYAFLTSVYLINRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQFR 395
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
S F+GYS HKGY+ L P+ ++ S+ VIF E+ FP+
Sbjct: 396 SQECVFLGYSTSHKGYKCLAPSGRVFISKDVIFCENRFPY 435
>gb|KYP38387.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 600
Score = 293 bits (749), Expect = 5e-92
Identities = 134/281 (47%), Positives = 191/281 (67%), Gaps = 1/281 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPF-VVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
LGH + D + +AL CNI VN+ + FC SC +K H+LP S K L+L+ D
Sbjct: 135 LGHQNNDAITKALKICNIHIPTVNKISDFCDSCCIAKSHRLPSQPSSSVYSKPLELVFLD 194
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+WGP+ + S G+ Y+++ +D+ TR+ WIYLL KSD + FL+FK L E QF T +KS+
Sbjct: 195 VWGPASLESSWGYMYFLTCVDACTRYMWIYLLHRKSDVFSHFLNFKTLAEKQFQTLLKSV 254
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
QTDGGGEF L + +GIIHR++CP+T QNG+ ER+H ++VE+ L+++ ++LPLK+
Sbjct: 255 QTDGGGEFRPLTSFLQQHGIIHRLTCPHTHHQNGIVERRHIHVVELGLAMLHHASLPLKF 314
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
WD F +A YLINR PS + +SPY L+ +P+Y LK FGC CFPLL+PYN+HK++P
Sbjct: 315 WDHGFLTATYLINRLPSSSIGHQSPYHLIHHKEPDYQFLKIFGCSCFPLLRPYNQHKIQP 374
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
+S F+GYSP HKGY+ L + +I S+ V+FNE FP+
Sbjct: 375 RSEECLFLGYSPTHKGYKCLSKSGRIYISKDVVFNESRFPY 415
>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 785
Score = 297 bits (760), Expect = 7e-92
Identities = 131/280 (46%), Positives = 189/280 (67%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP D++K CN P + + FC C K HKLP + S + +LI++DL
Sbjct: 409 LGHPHNDVIKSVFRLCNFPIINKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFELIYSDL 468
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+P+ S NG++YYV+F+D+HTRFTWI+LLK K+ T + F F A+++NQF IK++Q
Sbjct: 469 WGPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLPIKAIQ 528
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
TD GGEF + + + GI HR+ CP+T QNG+ ERKHR+IVE+ L++++Q++LP+++W
Sbjct: 529 TDWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGVVERKHRHIVELGLTMLAQAHLPMQFW 588
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D AF ++VYLINR PS + P+ L P+Y+ L+ FGC CFP L+PYNK+KL+ +
Sbjct: 589 DHAFLTSVYLINRLPSSSIQNDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFR 648
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
S F+GYS HKGY+ L P +I S+ V+F E FP+
Sbjct: 649 SQECVFLGYSTSHKGYKCLAPTGRIFISKDVVFCETRFPY 688
>gb|KYP75335.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 537
Score = 290 bits (741), Expect = 1e-91
Identities = 129/280 (46%), Positives = 187/280 (66%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP D++K CN P + + FC C K HKLP + S + +LI++DL
Sbjct: 45 LGHPHNDVMKSMFRLCNFPIINKTVSDFCTPCRLGKSHKLPSTLSKTVYHTPFELIYSDL 104
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
W P+P+ S NG++YYV+F+D+HTRF WI+L K+K+ T + F F A+++NQF IK++Q
Sbjct: 105 WRPAPITSDNGYQYYVTFVDAHTRFIWIFLFKSKAHTLDVFKQFHAMIQNQFQLPIKAIQ 164
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
TD GGEF + + + GI HR+ CP+T QNG+ ERKHR+IVE+ L++++Q++LP+++W
Sbjct: 165 TDWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGIVERKHRHIVELGLTMLAQAHLPMQFW 224
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D AF ++VYLINR PS + P+ L P+Y+ L+ FGC CFP L+PYNK+KL+ +
Sbjct: 225 DHAFLTSVYLINRLPSSSIQHDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQLR 284
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
S F+GYS HKGY+ L P +I S+ VIF E FP+
Sbjct: 285 SQECVFLGYSTSHKGYKCLAPTGRIFISKDVIFCETRFPY 324
>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1279
Score = 303 bits (775), Expect = 4e-91
Identities = 143/282 (50%), Positives = 191/282 (67%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP+ ++K LTQCN+ +FC SC K +LP S S LD+I TDL
Sbjct: 368 LGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYSAPLDVIFTDL 427
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGPS + S +G+ YYV+FID+ +++TWIY LK+K++T + F FKA+ E QFNT IKS+Q
Sbjct: 428 WGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQ 487
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
+D GGE+ A + + GI HR+ CP+T QNG+ ERKHR+IVE+ L+L+ ++LPLK+W
Sbjct: 488 SDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFW 547
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D AFT+AVYLINR PS LNF P+ L P+Y L+TFGC CFP L+PY HKL +
Sbjct: 548 DFAFTTAVYLINRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPYASHKLNFR 607
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFTN 847
S F+GYS HKGY+ L + +I S+ VIFNEH FP+T+
Sbjct: 608 SQECVFLGYSNSHKGYKCLSSSGRIYISKDVIFNEHRFPYTD 649
>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 303 bits (777), Expect = 5e-91
Identities = 142/281 (50%), Positives = 194/281 (69%), Gaps = 1/281 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPF-VVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
LGHP +D + RAL CNI VN+ + FC SC +K H+LP S K L+L+ D
Sbjct: 506 LGHPHHDSLTRALQTCNIRLPTVNKISDFCDSCCIAKSHRLPSHPSTTIYSKPLELVFLD 565
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+WGP+ + S G+ Y+++ +D+ T++ WIYLL+ KSD + F +FKAL E QF +KS+
Sbjct: 566 VWGPASLESSCGYLYFLTCVDACTKYVWIYLLRRKSDVFSNFQNFKALAEKQFQLPLKSV 625
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
QTDGGGEF AL + F GI+HR++CPYT QNG ER+HR+IVE+ L+++ S LPL +
Sbjct: 626 QTDGGGEFRALISFFQQEGILHRLTCPYTHHQNGTVERRHRHIVELGLAMLHHSTLPLNF 685
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
WD AF +A YLINR PS + F+SPY+L+ P+Y+ LK FGC CFPLL+PYN+HKL+P
Sbjct: 686 WDHAFLTATYLINRLPSSSVGFQSPYKLIHHKDPDYTFLKVFGCSCFPLLRPYNQHKLQP 745
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
+S F+GYSP HKGY+ L + +I S+ VIFNE FP+
Sbjct: 746 RSEECVFLGYSPLHKGYKCLSKSGRIYISKDVIFNEGRFPY 786
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 303 bits (777), Expect = 6e-91
Identities = 148/286 (51%), Positives = 205/286 (71%), Gaps = 2/286 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFV-VNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
LGHPSY +V++ + N+P + V+E+ C +C ++K H+L F +S + L+L+ +D
Sbjct: 460 LGHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFSD 519
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+WGP+P N KYYVSFID +++FTWIYLLK KS+ + F F++LVE FN I +M
Sbjct: 520 VWGPAPQSVGNN-KYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVAM 578
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
QTD GGE+ L + F+ GI H +SCP+T QQNG AERKHR+IVEV L+L++ S++PLK+
Sbjct: 579 QTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKF 638
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
W EAF SAVYLINRTPS++L+ SP E L GHKP+Y+ L+ FGC C+P L+PYNKHKL+
Sbjct: 639 WGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQF 698
Query: 719 KSLPSTFIGYSPQHKGYRILLPN-NKIITSRHVIFNEHSFPFTNKH 853
+S TF+GYS HKG++ L P+ ++ SR V+F+E FPFT H
Sbjct: 699 RSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKLH 744
>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1358
Score = 303 bits (775), Expect = 7e-91
Identities = 143/282 (50%), Positives = 191/282 (67%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP+ ++K LTQCN+ +FC SC K +LP S S LD+I TDL
Sbjct: 447 LGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYSAPLDVIFTDL 506
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGPS + S +G+ YYV+FID+ +++TWIY LK+K++T + F FKA+ E QFNT IKS+Q
Sbjct: 507 WGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQ 566
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
+D GGE+ A + + GI HR+ CP+T QNG+ ERKHR+IVE+ L+L+ ++LPLK+W
Sbjct: 567 SDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFW 626
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D AFT+AVYLINR PS LNF P+ L P+Y L+TFGC CFP L+PY HKL +
Sbjct: 627 DFAFTTAVYLINRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPYASHKLNFR 686
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFTN 847
S F+GYS HKGY+ L + +I S+ VIFNEH FP+T+
Sbjct: 687 SQECVFLGYSNSHKGYKCLSSSGRIYISKDVIFNEHRFPYTD 728
>gb|KYP65286.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 904
Score = 296 bits (759), Expect = 9e-91
Identities = 138/283 (48%), Positives = 191/283 (67%), Gaps = 1/283 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPF-VVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
LGHP +D + +AL CNI VN+ + FC SC +K H+LP S K L+L+ D
Sbjct: 473 LGHPHHDSLTKALQTCNIRLPTVNKISDFCDSCCIAKSHRLPSQPSTTIYSKPLELVFLD 532
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+WGP+ + S G+ Y+++ +D+ T++ WIYLL+ KSD + F +FK L E QF T +KS+
Sbjct: 533 VWGPASLESSCGYLYFLTCVDACTKYVWIYLLRRKSDVSSNFQNFKDLAEKQFQTPLKSV 592
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
QTDGGGEF L F GI+HR++CPYT QNG ER+HR+IVE L+++ S LPL +
Sbjct: 593 QTDGGGEFRTLIPFFQQEGILHRLTCPYTHYQNGTVERRHRHIVEFGLAMLHHSALPLNF 652
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
WD AF +A LINR PS + F+SPY+L+ P+Y+ LK FGC CFPLL+PYN+HK++P
Sbjct: 653 WDHAFLTATCLINRLPSSSVGFQSPYKLIHNKDPDYAFLKVFGCSCFPLLRPYNQHKIQP 712
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFTN 847
+S F+GYSP HKGY+ L + +I S+ VIFNE FP+ +
Sbjct: 713 RSEECVFLGYSPSHKGYKCLSRSGRIYISKDVIFNEGRFPYND 755
>gb|KYP51497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 872
Score = 296 bits (757), Expect = 1e-90
Identities = 138/286 (48%), Positives = 193/286 (67%), Gaps = 1/286 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPF-VVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
LGHP +D + +AL CNI VN+ + FC SC +K H+LP S K L+L+ D
Sbjct: 135 LGHPHHDSLTKALQTCNIRLPTVNKISDFCDSCCIAKSHRLPSQPSTTVYSKPLELVFLD 194
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+W P+ + S G+ Y+++ +D+ T++ WIYLL+ KSD + F +FKAL E QF T +KS+
Sbjct: 195 VWVPASLESSCGYLYFLTCVDACTKYMWIYLLRRKSDVYSNFQNFKALAEKQFQTPLKSV 254
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
QTDGGGEF L GI+HR++CPY QNG ER+HR+I+E+ L+++ S LPLK+
Sbjct: 255 QTDGGGEFRTLIPFLQQEGILHRLTCPYMHHQNGTVERRHRHIIELGLAMLHHSALPLKF 314
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
WD AF +A YLINR PS + F+SPY+L+ P+Y+ LK FGC CFPLL+PYN+HK++P
Sbjct: 315 WDHAFLTATYLINRLPSSSVGFQSPYKLIHNKDPDYAFLKVFGCSCFPLLRPYNQHKIQP 374
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPFTNKHI 856
+S F+GYSP HKGY+ L + +I S+ VIFNE FP+ + I
Sbjct: 375 RSEECLFLGYSPSHKGYKCLSRSGRIYISKDVIFNEGRFPYNDLFI 420
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 302 bits (773), Expect = 2e-90
Identities = 143/281 (50%), Positives = 188/281 (66%), Gaps = 1/281 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGH VK L CNIPF C C K H+L S+ K ++IH DL
Sbjct: 503 LGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDL 562
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+P S+ G+ YY++F+D++T+FTWIY LKAKSD AF FKAL++NQF SIK++Q
Sbjct: 563 WGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQ 622
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
+D GGEF A + GI HR++CP+T QNG ERKHR+IVE+ L+L+S ++LPLK+W
Sbjct: 623 SDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHADLPLKFW 682
Query: 542 DEAFTSAVYLINRTPSKLLN-FKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
D +FT AVYLINR PS + F+SPY L +P+YS +K FGCLCFP L+PYN HKL+
Sbjct: 683 DHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQY 742
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
KS P ++G SPQHKG++ L +I S+ VIF+E FP+
Sbjct: 743 KSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPY 783
>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1073
Score = 298 bits (764), Expect = 2e-90
Identities = 136/280 (48%), Positives = 190/280 (67%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGHP+ D++K NI V N K+ FC C K H+LP + S DL+++DL
Sbjct: 170 LGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDL 229
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+PV S G++YYV+F+D+HTRFTWIYLLK+K+ T N F F A+V+NQ++ IK++Q
Sbjct: 230 WGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQ 289
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
TD GGE+ + + GI HR+ CP+T QNG+AERKHR+IVE+ L+L++Q+ LP+++W
Sbjct: 290 TDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFW 349
Query: 542 DEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEPK 721
D +F +AVYLINR PS + PY L P+Y L+ FGC CFP L+PYNKHKL+ +
Sbjct: 350 DHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFR 409
Query: 722 SLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
S F+GYS HKGY+ L + ++ S+ V+FNE FP+
Sbjct: 410 SQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPY 449
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 300 bits (767), Expect = 1e-89
Identities = 142/281 (50%), Positives = 187/281 (66%), Gaps = 1/281 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQFCVSCFQSKMHKLPFSESHEHNYKTLDLIHTDL 181
LGH VK L CNIPF C C K H+L S+ K ++IH DL
Sbjct: 503 LGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDL 562
Query: 182 WGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSMQ 361
WGP+P S+ G+ YY++F+D++T+FTWIY LKAKSD AF FKAL++NQF SIK++Q
Sbjct: 563 WGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAIQ 622
Query: 362 TDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKYW 541
+D GGEF A + GI HR++CP+T QNG ERKHR+IVE+ L+L+S + LPLK+W
Sbjct: 623 SDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHAALPLKFW 682
Query: 542 DEAFTSAVYLINRTPSKLLN-FKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
D +FT AVYLINR PS + F+SPY L +P+YS +K FGCLCFP L+PYN HKL+
Sbjct: 683 DHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQY 742
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFPF 841
+S P ++G SPQHKG++ L +I S+ VIF+E FP+
Sbjct: 743 RSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPY 783
>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1403
Score = 299 bits (766), Expect = 2e-89
Identities = 137/280 (48%), Positives = 192/280 (68%), Gaps = 1/280 (0%)
Frame = +2
Query: 2 LGHPSYDIVKRALTQCNIPFVVNEKNQF-CVSCFQSKMHKLPFSESHEHNYKTLDLIHTD 178
L H S IV+ + CN+P +N ++ C SC K H LPFS+S+ L+L+++D
Sbjct: 486 LAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSD 545
Query: 179 LWGPSPVPSHNGFKYYVSFIDSHTRFTWIYLLKAKSDTKNAFLHFKALVENQFNTSIKSM 358
+WGPS S GF+YYV F D+ +++TWIY + KS+T + F+HFK++VENQF IK
Sbjct: 546 VWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIKMF 605
Query: 359 QTDGGGEFIALANTFSHYGIIHRMSCPYTPQQNGLAERKHRNIVEVALSLISQSNLPLKY 538
Q+DGG EF L F+ GI HR+SCP++ QQNG AERKHR+I EV L+L+S S LP +
Sbjct: 606 QSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSSGLPHIF 665
Query: 539 WDEAFTSAVYLINRTPSKLLNFKSPYELLTGHKPNYSLLKTFGCLCFPLLKPYNKHKLEP 718
W +AF++A+++INR P+ +L KSPYE+L P+Y LL+ FGC C+P L+P+N HK++
Sbjct: 666 WSDAFSTAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFNSHKMDF 725
Query: 719 KSLPSTFIGYSPQHKGYRILLPNNKIITSRHVIFNEHSFP 838
+S FIGYS QHKGY+ N KII SR+V+F+E +FP
Sbjct: 726 RSSQCVFIGYSMQHKGYKCFTTNGKIIISRNVVFDEDTFP 765