BLASTX nr result
ID: Rehmannia28_contig00044411
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00044411
(1155 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011080605.1| PREDICTED: DNA-directed RNA polymerase III s... 281 1e-90
ref|XP_011081983.1| PREDICTED: DNA-directed RNA polymerase III s... 279 8e-90
ref|XP_012843484.1| PREDICTED: DNA-directed RNA polymerase III s... 252 3e-79
emb|CDP07151.1| unnamed protein product [Coffea canephora] 248 2e-76
ref|XP_009774782.1| PREDICTED: DNA-directed RNA polymerase III s... 232 2e-71
ref|XP_009620517.1| PREDICTED: DNA-directed RNA polymerase III s... 229 3e-70
ref|XP_004245997.1| PREDICTED: DNA-directed RNA polymerase III s... 224 1e-68
ref|XP_009785680.1| PREDICTED: DNA-directed RNA polymerase III s... 224 2e-68
ref|XP_006366884.1| PREDICTED: DNA-directed RNA polymerase III s... 224 3e-68
ref|XP_009625703.1| PREDICTED: DNA-directed RNA polymerase III s... 223 8e-68
ref|XP_015169403.1| PREDICTED: DNA-directed RNA polymerase III s... 202 8e-60
ref|XP_015932888.1| PREDICTED: DNA-directed RNA polymerase III s... 201 1e-59
ref|XP_011048175.1| PREDICTED: DNA-directed RNA polymerase III s... 201 1e-59
ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Popu... 201 1e-59
ref|XP_011003009.1| PREDICTED: DNA-directed RNA polymerase III s... 201 3e-59
ref|XP_011008461.1| PREDICTED: DNA-directed RNA polymerase III s... 201 3e-59
ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Popu... 202 5e-59
ref|XP_011003010.1| PREDICTED: DNA-directed RNA polymerase III s... 201 5e-59
ref|XP_010647482.1| PREDICTED: DNA-directed RNA polymerase III s... 196 1e-57
ref|XP_015872858.1| PREDICTED: DNA-directed RNA polymerase III s... 196 2e-57
>ref|XP_011080605.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Sesamum indicum]
Length = 239
Score = 281 bits (719), Expect = 1e-90
Identities = 146/231 (63%), Positives = 167/231 (72%), Gaps = 2/231 (0%)
Frame = -2
Query: 860 SHKRKRPEKYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXX 681
S KRKRPE G VDAER IL+ IK KK LGI R+IKQET
Sbjct: 9 SLKRKRPETDSPGLVDAERAILNSIKGKKDLGIWARDIKQETKLTDHVVNKSLKSLLAKK 68
Query: 680 XXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVV 501
KEVVNI NK KHYMAVEFEPS EISGG+WYVDG L+KE I+ L++LC RY+RT+KV
Sbjct: 69 LIKEVVNIQNKGKKHYMAVEFEPSKEISGGEWYVDGNLDKELINVLKQLCFRYLRTQKVA 128
Query: 500 TLERVHDLLKK--VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRV 327
TLE V++ LKK VVTFDIS+QQV E IEVKSTGLGDYHSIP+GT+CYR+
Sbjct: 129 TLEGVYNELKKNRVVTFDISNQQVSEILNSMVLDNDLIEVKSTGLGDYHSIPIGTVCYRI 188
Query: 326 ASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
AS AGV GPR GAFASIPCGACPRIS+CTP+GVI+P CV+Y KWL+I+F
Sbjct: 189 ASAAGVAKGPRMGAFASIPCGACPRISLCTPNGVISPGTCVYYTKWLSIDF 239
>ref|XP_011081983.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Sesamum indicum]
Length = 239
Score = 279 bits (713), Expect = 8e-90
Identities = 150/240 (62%), Positives = 170/240 (70%), Gaps = 2/240 (0%)
Frame = -2
Query: 887 MSHSLVSLSSHKRKRPEKYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXX 708
MS SLVS S KRKRPE P G +DAER ILD IK KK LG R+IKQET
Sbjct: 1 MSRSLVS-PSLKRKRPETGPPGLIDAERAILDSIKGKKDLGNWARDIKQETKLTDHVVNK 59
Query: 707 XXXXXXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCL 528
KEVVNI NK KHYM+VEFEPS EISGG+WYVDG L+KE I+ L++LCL
Sbjct: 60 SLKSLLAKKLIKEVVNIQNKGKKHYMSVEFEPSKEISGGEWYVDGNLDKELINILKQLCL 119
Query: 527 RYMRTKKVVTLERVHDLLKK--VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSI 354
RY+R +KV LE VH+ LKK VVTF+IS QQVGE IEVKSTGLGDYHSI
Sbjct: 120 RYLRVQKVAILEGVHNDLKKNRVVTFEISCQQVGEILNSMVLDNDIIEVKSTGLGDYHSI 179
Query: 353 PVGTICYRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
P+GTICYR A+GAG GPR GAFA++ GACPRIS+CTPDGVI+PS CV+Y KWLNI+F
Sbjct: 180 PIGTICYRFANGAGAGKGPRLGAFATVRFGACPRISLCTPDGVISPSTCVYYTKWLNIDF 239
>ref|XP_012843484.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Erythranthe guttata] gi|604321791|gb|EYU32313.1|
hypothetical protein MIMGU_mgv1a012840mg [Erythranthe
guttata]
Length = 238
Score = 252 bits (643), Expect = 3e-79
Identities = 133/241 (55%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Frame = -2
Query: 887 MSHSLVSLSSHKRKRPEKYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXX 708
MS S +L KR+RP SG +D+ER +L+ IKSK ++GI R+IK ET
Sbjct: 1 MSRSNANL---KRRRPGTDESGLIDSERAVLNSIKSKGNMGIWTRDIKLETNLTDPVVSK 57
Query: 707 XXXXXXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCL 528
KEVVNI NK KHYM+VEFEPS EISGG+WY +G L+KE I +Q +CL
Sbjct: 58 SVKSLMAKNLIKEVVNIQNKGKKHYMSVEFEPSKEISGGEWYSNGALDKELIKAVQDMCL 117
Query: 527 RYMRTKKVVTLERVHDLLKK--VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSI 354
R++R +KV T+E VH+ LKK V+TF+ S +QV + IEVKS+GLGDYHSI
Sbjct: 118 RFLRAQKVTTIEGVHNDLKKSRVLTFEPSREQVVDILNSMVLDNNIIEVKSSGLGDYHSI 177
Query: 353 PVGTICYRVASGAGVLT-GPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIE 177
P+GT+CYRVASGAGV GP+ G FASIPCGACPRIS+CTPDG I+P+ CV+Y KWLN+E
Sbjct: 178 PIGTVCYRVASGAGVAKGGPKKGGFASIPCGACPRISVCTPDGPISPATCVYYTKWLNVE 237
Query: 176 F 174
F
Sbjct: 238 F 238
>emb|CDP07151.1| unnamed protein product [Coffea canephora]
Length = 334
Score = 248 bits (633), Expect = 2e-76
Identities = 132/253 (52%), Positives = 166/253 (65%), Gaps = 6/253 (2%)
Frame = -2
Query: 923 SPANNFHPTSFC--MSHSLVSLSSHKRKRPEKYPSGP--VDAERTILDLIKSKKHLGICV 756
SP N H +SF MS S+ + SS KRKRPE + VDA+R + ++IKSK+ +GI
Sbjct: 82 SPEPNLHQSSFVFRMSRSM-NASSLKRKRPESSSANGSLVDADRAVFNVIKSKEDMGIWT 140
Query: 755 REIKQETXXXXXXXXXXXXXXXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVD 576
R+IK ET KE+VNI NK KHYMA EFEPS E++GG WYVD
Sbjct: 141 RDIKFETKLADTVVNKSLKSLLSKKLIKEIVNIKNKGRKHYMAAEFEPSKEVTGGAWYVD 200
Query: 575 GELNKEFIDELQKLCLRYMRTKKVVTLERVHDLL--KKVVTFDISSQQVGEXXXXXXXXX 402
G L+KE I L+ LCL+ + +KKV T+E V+D L KV TFD ++QQ+ E
Sbjct: 201 GNLDKELIGVLKGLCLKIINSKKVATVEGVYDFLTKSKVTTFDCTNQQIAEVLNSMVLDN 260
Query: 401 XXIEVKSTGLGDYHSIPVGTICYRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVI 222
IEVKSTGLG+YHSIP+GT+CYR+A GAG+ + GA ASIPCG CPRIS CTPDGVI
Sbjct: 261 EVIEVKSTGLGEYHSIPIGTVCYRIAKGAGLGESLKIGAMASIPCGMCPRISQCTPDGVI 320
Query: 221 APSNCVHYEKWLN 183
+PS CV+Y+KW+N
Sbjct: 321 SPSTCVYYQKWMN 333
>ref|XP_009774782.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nicotiana sylvestris]
Length = 240
Score = 232 bits (591), Expect = 2e-71
Identities = 119/230 (51%), Positives = 149/230 (64%), Gaps = 3/230 (1%)
Frame = -2
Query: 854 KRKRPE--KYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXX 681
KRKRP+ G DAER +L L+K+KK+LGI V E+K+E
Sbjct: 11 KRKRPDLDSPTQGLPDAERVVLSLVKNKKNLGIWVAEVKKEANLPPTLVDKSLTALVKKK 70
Query: 680 XXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVV 501
K+VVNI NK KHYMAVEFEPS E++GG WY +G L+KEFI L+ CL+ + KV
Sbjct: 71 LIKQVVNIQNKGKKHYMAVEFEPSEELTGGSWYSEGNLDKEFITVLRDTCLKVIELLKVA 130
Query: 500 TLERVHDLLKKVVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVAS 321
T+E +H+ LKK + +SQQ+ E IEVKSTGLG+YH IPVG++CYR AS
Sbjct: 131 TVEGIHNFLKKRKVVECTSQQIAEILNSMVLDNAIIEVKSTGLGEYHPIPVGSVCYRTAS 190
Query: 320 GAGVLTGPRT-GAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
G + TGP+T G ASIPCGACPRIS C+P+GVI+P CV+Y KWLN EF
Sbjct: 191 GVALGTGPKTIGPMASIPCGACPRISQCSPNGVISPQTCVYYTKWLNTEF 240
>ref|XP_009620517.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nicotiana tomentosiformis]
Length = 240
Score = 229 bits (583), Expect = 3e-70
Identities = 117/230 (50%), Positives = 149/230 (64%), Gaps = 3/230 (1%)
Frame = -2
Query: 854 KRKRPE--KYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXX 681
KRKRP+ G DAER +L L+K+K++LGI V E+K+E
Sbjct: 11 KRKRPDLDSPTRGLPDAERVVLSLVKNKRNLGIWVVEVKKEANLPPTLVDKSLTALVKKK 70
Query: 680 XXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVV 501
K+VVNI NK KHYMAVEFEPS E++GG WY +G L+KEFI L+ C + + KV
Sbjct: 71 LIKQVVNIQNKGKKHYMAVEFEPSEELTGGSWYSEGNLDKEFITVLRDTCFKVIELLKVA 130
Query: 500 TLERVHDLLKKVVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVAS 321
T+E +H+ LKK + +SQQ+ E IEVKSTGLG+YHSIPVG++CYR +S
Sbjct: 131 TVEGIHNFLKKRKVVECTSQQIAEILNSMVLDNAIIEVKSTGLGEYHSIPVGSVCYRTSS 190
Query: 320 GAGVLTGPRT-GAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
G + TGP+T G ASIPCGACPRIS C+P+GVI+P CV+Y KWLN EF
Sbjct: 191 GVALGTGPKTIGPMASIPCGACPRISQCSPNGVISPQTCVYYTKWLNTEF 240
>ref|XP_004245997.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Solanum lycopersicum] gi|970044133|ref|XP_015083473.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc6-like [Solanum pennellii]
Length = 237
Score = 224 bits (572), Expect = 1e-68
Identities = 115/229 (50%), Positives = 154/229 (67%), Gaps = 2/229 (0%)
Frame = -2
Query: 854 KRKRPEKYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXXXX 675
KRKRP+ G VDAE +L+++KSKK+ G+ V ++K+E
Sbjct: 11 KRKRPDSSTQGLVDAELVVLNVVKSKKNQGVWVADVKKEANIAPALVDKCLTSLVKKNLI 70
Query: 674 KEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVVTL 495
K+V +I NK K+YMAVE+EPS E++GG WY +G+L+KEFI L++ CL+ + KV T+
Sbjct: 71 KKVPSIQNKAKKYYMAVEYEPSEELTGGAWYSEGKLDKEFITVLRETCLKVIGMMKVATV 130
Query: 494 ERVHDLLKK-VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVASG 318
E +HD LKK V +SQQVGE IEVKSTGLG+YHSIP+G++CYR+A
Sbjct: 131 EGIHDFLKKRKVVECCTSQQVGEILNSMVLDDSIIEVKSTGLGEYHSIPIGSVCYRIA-- 188
Query: 317 AGVLTGPRT-GAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
GV +GP+T G ASIPCGACPRIS+CTPDG+I+P CV++ KWL+IEF
Sbjct: 189 VGVTSGPKTIGPMASIPCGACPRISVCTPDGIISPKTCVYFTKWLDIEF 237
>ref|XP_009785680.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nicotiana sylvestris]
Length = 244
Score = 224 bits (572), Expect = 2e-68
Identities = 118/230 (51%), Positives = 146/230 (63%), Gaps = 3/230 (1%)
Frame = -2
Query: 854 KRKRPE--KYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXX 681
KRKRP+ G DAER +L L+K+KK+LGI V E+K+E
Sbjct: 15 KRKRPDLDSPTQGLPDAERVVLSLVKNKKNLGIWVAEVKKEANLPPTLVDKSLTALVKKK 74
Query: 680 XXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVV 501
K+VVNI NK KHYMAVEFE S E++GG WY +G L+KEFI L+ CL+ + KV
Sbjct: 75 LIKQVVNIQNKGKKHYMAVEFECSEELTGGSWYSEGNLDKEFITVLRDTCLKVIELLKVA 134
Query: 500 TLERVHDLLKKVVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVAS 321
T+E +H+ LKK + +SQQ+ E IEVKST LG+YHSIPVG +CYR AS
Sbjct: 135 TVEGIHNFLKKRKVVECTSQQIVEILNSMVLDNAIIEVKSTELGEYHSIPVGLVCYRTAS 194
Query: 320 GAGVLTGPRT-GAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
G + TGP+T G ASIPCGACPRIS C+P+GVI P CV+Y KWLN EF
Sbjct: 195 GVALGTGPKTIGPMASIPCGACPRISQCSPNGVICPQTCVYYTKWLNTEF 244
>ref|XP_006366884.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Solanum
tuberosum]
Length = 237
Score = 224 bits (570), Expect = 3e-68
Identities = 117/229 (51%), Positives = 151/229 (65%), Gaps = 2/229 (0%)
Frame = -2
Query: 854 KRKRPEKYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXXXX 675
KRKR + G VDAE +L+++KSKK+LG+ V ++K+E
Sbjct: 11 KRKRLDSSTQGLVDAEFVVLNVVKSKKNLGVWVADVKKEANIAPALVDKCLTSLVKKNLI 70
Query: 674 KEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVVTL 495
K+V I NK KHYMAVE+EPS E++GG WY +G+L+KEFI L++ CL+ + KV T+
Sbjct: 71 KKVPTIQNKAKKHYMAVEYEPSEELTGGAWYSEGKLDKEFITVLRETCLKVIGMMKVATV 130
Query: 494 ERVHDLLKK-VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVASG 318
E +HD LKK V +SQQVGE IEVKSTGLG+YHSIP+G+ CYR+A
Sbjct: 131 EGIHDFLKKRKVVECCTSQQVGEILNSMVLDDAIIEVKSTGLGEYHSIPIGSACYRIA-- 188
Query: 317 AGVLTGPRT-GAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
G +GP+T G ASIPCGACPRIS+CTPDG+I+P CV+Y KWLNIEF
Sbjct: 189 VGDTSGPKTIGPMASIPCGACPRISVCTPDGIISPKTCVYYTKWLNIEF 237
>ref|XP_009625703.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nicotiana tomentosiformis]
Length = 240
Score = 223 bits (567), Expect = 8e-68
Identities = 115/230 (50%), Positives = 146/230 (63%), Gaps = 3/230 (1%)
Frame = -2
Query: 854 KRKRPE--KYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXX 681
KRKRP+ G DAE +L L+K+KK+LGI V E+K+E
Sbjct: 11 KRKRPDLDSPTRGLPDAECVVLSLVKNKKNLGIWVAEVKKEANLPPTLVDKSLTALVKKK 70
Query: 680 XXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVV 501
K+VVNI NK KHYMAVEFEPS E++GG WY +G L+KEFI L+ C + + KV
Sbjct: 71 LIKQVVNIQNKGKKHYMAVEFEPSEELTGGSWYSEGNLDKEFITVLRDTCFKVIELLKVA 130
Query: 500 TLERVHDLLKKVVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVAS 321
T+E +H+ LKK + + QQ+ E IEVKSTGLG+YHSIPVG++CYR +S
Sbjct: 131 TVEGIHNFLKKRKVVECTGQQIAEILNSMVLDNAIIEVKSTGLGEYHSIPVGSVCYRTSS 190
Query: 320 GAGVLTGPRT-GAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
G + TGP+T G ASIPCGAC RIS C+P+GVI+P CV+Y KWLN EF
Sbjct: 191 GVALGTGPKTIGPMASIPCGACRRISQCSPNGVISPQTCVYYTKWLNTEF 240
>ref|XP_015169403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Solanum tuberosum]
Length = 241
Score = 202 bits (514), Expect = 8e-60
Identities = 106/229 (46%), Positives = 142/229 (62%), Gaps = 2/229 (0%)
Frame = -2
Query: 854 KRKRPEKYPSGPVDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXXXX 675
+R + G VDA+ +L+++KSKK+ GI +K+E
Sbjct: 13 RRLNVDSPTQGLVDADYIVLNVVKSKKNQGILKAGVKKEANIAPIVVDKSLKLLVKKNLI 72
Query: 674 KEVVNIHNK-RNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVVT 498
K+V NI +K RN +Y+AVEFEPS+E++GG WY +G L+KEFI L+ CL+ ++ KV T
Sbjct: 73 KQVTNIQSKGRNPYYIAVEFEPSDELTGGAWYSEGNLDKEFITVLRDTCLKVIQMLKVAT 132
Query: 497 LERVHDLLKKVVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRVASG 318
E +HD LKK + +SQQ+ E IEVKS GLG+YHSIPVG++CYR ASG
Sbjct: 133 AEGIHDFLKKRKVVECTSQQIAEILKSMVLDNTVIEVKSIGLGEYHSIPVGSVCYRTASG 192
Query: 317 AGVLTGPRTGA-FASIPCGACPRISMCTPDGVIAPSNCVHYEKWLNIEF 174
+ P+T A ASIPCGAC RI+ CTP+GVI+P CV+Y KWLN EF
Sbjct: 193 VALEADPKTIAPMASIPCGACSRINQCTPNGVISPQTCVYYTKWLNFEF 241
>ref|XP_015932888.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Arachis duranensis] gi|1012210061|ref|XP_015932889.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC6-like [Arachis duranensis]
gi|1012210065|ref|XP_015932890.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC6-like
[Arachis duranensis]
Length = 239
Score = 201 bits (512), Expect = 1e-59
Identities = 106/238 (44%), Positives = 147/238 (61%), Gaps = 3/238 (1%)
Frame = -2
Query: 887 MSHSLVSLSSHKRKRPEKYPSGPV-DAERTILDLIKSKKHLGICVREIKQETXXXXXXXX 711
MS S SS KRKR S + D ER + +LI SK+ +GI ++K+ET
Sbjct: 1 MSRLQGSSSSLKRKRELALVSDTLTDGERVLYNLILSKRDMGIWSGDMKRETNLPDNVVK 60
Query: 710 XXXXXXXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLC 531
KEVVNI NK KHYMA +FEPS EI+GGDWY +G L+KE I+ ++ +C
Sbjct: 61 KSLKLLQSKGLIKEVVNIQNKARKHYMAAQFEPSKEITGGDWYSEGNLDKELINAVKSVC 120
Query: 530 LRYMRTKKVVTLERVHDLLKK--VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHS 357
L+Y+ +KVVT + V + +K V T ++S+QQ+ E IEVKSTG GD+ +
Sbjct: 121 LKYISRQKVVTCDGVLEWSRKSGVFTAEVSNQQIEEILRTLVLDDEIIEVKSTGYGDFEN 180
Query: 356 IPVGTICYRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
+PVG +CY+ S GV P+ GA +SIPCG CPRI+ C+PDG+++P CV+Y+KWL+
Sbjct: 181 VPVGRVCYKCKSKGGVRGEPKDGAMSSIPCGVCPRINFCSPDGIVSPRTCVYYQKWLD 238
>ref|XP_011048175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Populus euphratica] gi|743909396|ref|XP_011048177.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC6-like [Populus euphratica]
gi|743909398|ref|XP_011048178.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC6-like [Populus
euphratica]
Length = 239
Score = 201 bits (512), Expect = 1e-59
Identities = 105/233 (45%), Positives = 141/233 (60%), Gaps = 6/233 (2%)
Frame = -2
Query: 863 SSHKRKRPEKYPSGPVDA----ERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXX 696
SS KRKRPE + PV + ER + D+I+ K+ +GI R++K+E
Sbjct: 8 SSLKRKRPEL--NSPVQSLTEHERILYDVIRGKQDIGIWTRDMKKEAKLPDNVVNKSLKA 65
Query: 695 XXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMR 516
KEVVNI NK KH+MA EFEPS EISGG WY++G L+ EFI+ L++LC R +
Sbjct: 66 LRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQLCKRQIE 125
Query: 515 TKKVVTLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGT 342
K V TL V D++ F D++ QQ+ E +EVKS G+G++ SIP G
Sbjct: 126 KKGVATLVEVTDMINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEFASIPFGE 185
Query: 341 ICYRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
+CY+ S G+ P+ GA ASIPCG CPRIS CTPDG+I+P CV+Y+KWL+
Sbjct: 186 VCYKYVSKGGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLD 238
>ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| hypothetical protein
POPTR_0018s04220g [Populus trichocarpa]
Length = 239
Score = 201 bits (512), Expect = 1e-59
Identities = 104/231 (45%), Positives = 139/231 (60%), Gaps = 4/231 (1%)
Frame = -2
Query: 863 SSHKRKRPEKYPSGP--VDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXX 690
SS KRKRPE + ER + D+I+SK+ +GI R++K+E
Sbjct: 8 SSLKRKRPEVNSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVNKSLKALQ 67
Query: 689 XXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTK 510
KEVVNI NK KH+MA EFEPS EISGG WY++G L+ EFI+ L++LC R + +
Sbjct: 68 VKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLCKRQIERR 127
Query: 509 KVVTLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTIC 336
V TLE V D + F D++ QQ+ E +EVKS G+G++ SIP G +C
Sbjct: 128 GVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFASIPFGEVC 187
Query: 335 YRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
Y+ S G+ P+ GA ASIPCG CPRIS CTPDG+I+P CV+Y+KWL+
Sbjct: 188 YKYISKVGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLD 238
>ref|XP_011003009.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform X1 [Populus euphratica]
Length = 239
Score = 201 bits (510), Expect = 3e-59
Identities = 105/231 (45%), Positives = 141/231 (61%), Gaps = 4/231 (1%)
Frame = -2
Query: 863 SSHKRKRPE-KYPSGPVDA-ERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXX 690
SS KRKRPE P+ ++ ER + D+I+SK+ +GI R++K+E
Sbjct: 8 SSLKRKRPEVNSPAQSLNEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVNKSLKALQ 67
Query: 689 XXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTK 510
KEVVNI NK KH+MA EFEPS EISGG WY++G L+ EFI+ L++LC R +
Sbjct: 68 VKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLCKRQIERS 127
Query: 509 KVVTLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTIC 336
V TLE V D + F D++ QQ+ E +EVKS G+G++ SIP G +C
Sbjct: 128 GVATLEAVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFASIPFGEVC 187
Query: 335 YRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
Y+ S G+ P+ GA ASIPCG CPRIS CTPDG+I+P CV+Y+KWL+
Sbjct: 188 YKYVSKGGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLD 238
>ref|XP_011008461.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Populus euphratica] gi|743928510|ref|XP_011008462.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC6-like [Populus euphratica]
Length = 241
Score = 201 bits (510), Expect = 3e-59
Identities = 110/240 (45%), Positives = 147/240 (61%), Gaps = 5/240 (2%)
Frame = -2
Query: 887 MSHSLVSLSSHKRKRPE-KYPSGP-VDAERTILDLIKSKKHLGICVREIKQETXXXXXXX 714
MS S S SS KRKRP PS +D ER + D+I+SKK +GI R++K+ET
Sbjct: 1 MSRSQGSSSSLKRKRPGLSSPSQSLIDHERKLYDVIRSKKDMGIWTRDMKKETNLPDNVV 60
Query: 713 XXXXXXXXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKL 534
KEVVNI NK KHYMA EF+PS E++GG WYV G L+ +FI L+
Sbjct: 61 NKSLKALHAKNLIKEVVNIQNKGRKHYMATEFQPSKELTGGSWYVAGSLDTDFIGSLRMF 120
Query: 533 CLRYMRTKKVVTLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYH 360
C++Y+ +KV T+E+V +L++ F +++ QQV E +EVKS G+G++
Sbjct: 121 CVKYIAEEKVATVEQVTELIRGNGAFAVEVTKQQVEEIVRALVLDDEVMEVKSNGMGEFG 180
Query: 359 SIPVGTICYR-VASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
S+PVG +CY+ V G G GA ASIPCG CPRIS+CTPDGVI+P CV+Y KWL+
Sbjct: 181 SVPVGNVCYKCVGKGRGGGVKAVIGAMASIPCGVCPRISLCTPDGVISPRTCVYYTKWLD 240
>ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Populus trichocarpa]
gi|550346475|gb|EEE82426.2| hypothetical protein
POPTR_0001s04090g [Populus trichocarpa]
Length = 291
Score = 202 bits (513), Expect = 5e-59
Identities = 107/233 (45%), Positives = 141/233 (60%), Gaps = 6/233 (2%)
Frame = -2
Query: 863 SSHKRKRPEKYPSGPVDA----ERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXX 696
SS KRKRPE + PV + ER + D+I+SK+ +GI R++K+E
Sbjct: 60 SSLKRKRPEL--NSPVQSLTEHERILYDVIRSKQDIGIWTRDMKKEAKLPDNVVNKSLKA 117
Query: 695 XXXXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMR 516
KEVVNI NK KH+MA EFEPS EISGG WY++G L+ EFI+ L++LC R +
Sbjct: 118 LRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQLCKRQIE 177
Query: 515 TKKVVTLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGT 342
K V TLE V D + F D++ QQ+ E +EVKS G+G++ SIP G
Sbjct: 178 KKGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEFASIPFGK 237
Query: 341 ICYRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
+CYR S + P+ GA ASIPCG CPRIS CTPDG+I+P CV+Y+KWL+
Sbjct: 238 VCYRYISKGALGGEPKAGALASIPCGVCPRISHCTPDGIISPKTCVYYQKWLD 290
>ref|XP_011003010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform X2 [Populus euphratica]
Length = 258
Score = 201 bits (510), Expect = 5e-59
Identities = 105/231 (45%), Positives = 141/231 (61%), Gaps = 4/231 (1%)
Frame = -2
Query: 863 SSHKRKRPE-KYPSGPVDA-ERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXX 690
SS KRKRPE P+ ++ ER + D+I+SK+ +GI R++K+E
Sbjct: 27 SSLKRKRPEVNSPAQSLNEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVNKSLKALQ 86
Query: 689 XXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTK 510
KEVVNI NK KH+MA EFEPS EISGG WY++G L+ EFI+ L++LC R +
Sbjct: 87 VKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLCKRQIERS 146
Query: 509 KVVTLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTIC 336
V TLE V D + F D++ QQ+ E +EVKS G+G++ SIP G +C
Sbjct: 147 GVATLEAVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFASIPFGEVC 206
Query: 335 YRVASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
Y+ S G+ P+ GA ASIPCG CPRIS CTPDG+I+P CV+Y+KWL+
Sbjct: 207 YKYVSKGGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLD 257
>ref|XP_010647482.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 196 bits (499), Expect = 1e-57
Identities = 102/232 (43%), Positives = 142/232 (61%), Gaps = 5/232 (2%)
Frame = -2
Query: 863 SSHKRKRPEKYPSGP--VDAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXX 690
SS KRKRP+ + +DAER + DLI+SK+ +GI R++K+ET
Sbjct: 7 SSLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQ 66
Query: 689 XXXXXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTK 510
KEVVNI +K KHYMAVEFEPS E++GG WYV+G L+ E+I L+K C+R +
Sbjct: 67 VKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKL 126
Query: 509 KVVTLERVHDLLKK--VVTFDISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTIC 336
KV T E + + + K + + S+QQ+ E +EV+S+G G++ SIP+G +C
Sbjct: 127 KVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVC 186
Query: 335 YRVASGAGV-LTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
YR + G+ GP GA ASIPCG CPRI+ CTPDG+I+P C +Y KWL+
Sbjct: 187 YRCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLD 238
>ref|XP_015872858.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus
jujuba]
Length = 238
Score = 196 bits (498), Expect = 2e-57
Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 4/228 (1%)
Frame = -2
Query: 854 KRKRPEKY-PSGPV-DAERTILDLIKSKKHLGICVREIKQETXXXXXXXXXXXXXXXXXX 681
KRKRP+ PS + + ER + D+I+SK+ +GI R++K+ET
Sbjct: 11 KRKRPDSNSPSESLTEQERILYDVIRSKQDMGIWTRDMKRETNLPDNVVNKSLKSLQAKK 70
Query: 680 XXKEVVNIHNKRNKHYMAVEFEPSNEISGGDWYVDGELNKEFIDELQKLCLRYMRTKKVV 501
KEVVNI NK KHYMA EFEPS EISGG WYV+G L+ EFID L+ C + + ++V
Sbjct: 71 LIKEVVNIQNKGRKHYMAAEFEPSKEISGGAWYVEGSLDTEFIDLLKDQCAKIIYKQRVA 130
Query: 500 TLERVHDLLKKVVTF--DISSQQVGEXXXXXXXXXXXIEVKSTGLGDYHSIPVGTICYRV 327
T+E + D++++ F + S+QQ+ E ++VKS G+G++ SIPVG +CY+
Sbjct: 131 TVEGILDVIRRTGIFKVEFSTQQIEEILRALVLDNVVMDVKSNGMGEFDSIPVGKVCYK- 189
Query: 326 ASGAGVLTGPRTGAFASIPCGACPRISMCTPDGVIAPSNCVHYEKWLN 183
+ GV P+ GA ASIPCG CPRI+ CTPDG+I+P+ CV+Y KWL+
Sbjct: 190 CTNKGVRGEPKAGAMASIPCGVCPRINHCTPDGIISPTTCVYYNKWLD 237