BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00043953
         (3526 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]  1455   0.0  
emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]  1291   0.0  
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]  1210   0.0  
emb|CAN74536.1| hypothetical protein VITISV_023111 [Vitis vinifera]  1170   0.0  
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]  1139   0.0  
gb|KYP71150.1| Retrovirus-related Pol polyprotein from transposo...  1128   0.0  
gb|KYP77007.1| Retrovirus-related Pol polyprotein from transposo...  1128   0.0  
gb|KYP79141.1| Retrovirus-related Pol polyprotein from transposo...  1105   0.0  
emb|CAN66690.1| hypothetical protein VITISV_023209 [Vitis vinifera]  1086   0.0  
gb|AIC77183.1| polyprotein [Gossypium barbadense]                    1085   0.0  
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...  1076   0.0  
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...  1074   0.0  
gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...  1071   0.0  
ref|XP_013688817.1| PREDICTED: uncharacterized protein LOC106392...  1071   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]        1071   0.0  
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...  1070   0.0  
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...  1069   0.0  
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...  1064   0.0  
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768...  1035   0.0  
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi...  1035   0.0  

>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score = 1455 bits (3767), Expect = 0.0
 Identities = 702/978 (71%), Positives = 803/978 (82%)
 Frame = -1

Query: 3391 QNGERTNFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTV 3212
            Q  ERTNFAEKEEEVSLLM CH  + T  N+WY+D+GC+NHMCGDK  FS+LDE+FR +V
Sbjct: 262  QGEERTNFAEKEEEVSLLMACHANQXTHPNLWYIDTGCSNHMCGDKSAFSDLDETFRXSV 321

Query: 3211 KFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGV 3032
             FGDNS +SVMGKG V + +KE S Q+ISNV FVP LKTNLLS+ QLQEKGYEI IKDGV
Sbjct: 322  TFGDNSKVSVMGKGSVXIHSKEKSDQIISNVFFVPDLKTNLLSVXQLQEKGYEIFIKDGV 381

Query: 3031 CRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTL 2852
            CRIQDEKLGLIAQV MT NRMFPLYL NT+ +CFS KL D  WLWHFRYGHLNFGGLKTL
Sbjct: 382  CRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSTKLMDEGWLWHFRYGHLNFGGLKTL 441

Query: 2851 HQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSN 2672
             QKNMVTGLP I  PS++CEECVV KQHR QFP+GKSWR  + LELVHSDICGPINPTSN
Sbjct: 442  QQKNMVTGLPPIXTPSQICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSN 501

Query: 2671 RGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNS 2492
             GKRY ITFI DYS KTWVYFLQEKSEAF  FK++K+ VEKE   PIK+ R+D GGEY S
Sbjct: 502  GGKRYFITFIXDYSXKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTS 561

Query: 2491 HVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWS 2312
              F NFC  HGI++QLT AY+PQQNG   RKNRTI+N+V ++L++  +P+SFWPEAV WS
Sbjct: 562  QEFVNFCENHGIQKQLTAAYSPQQNGXSXRKNRTILNMVRTILSKGHIPRSFWPEAVIWS 621

Query: 2311 IHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFL 2132
            IHILNRSPTL VQN+TP EAW+ R+PSV++FRIFGCI+YAHIP +KR+KLDDKGEKCIFL
Sbjct: 622  IHILNRSPTLVVQNVTPXEAWNGRKPSVNHFRIFGCIAYAHIPXQKRKKLDDKGEKCIFL 681

Query: 2131 GVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXX 1952
            GVS+ SKAYKLYNPI+KKI ISRD++FDE  +W W+++  +QQI A+FD           
Sbjct: 682  GVSEXSKAYKLYNPITKKIXISRDIIFDEGSFWKWDDNTTKQQIQABFDGENEEERQQPL 741

Query: 1951 XXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKE 1772
              Q+  A     E P  A   PT              D  +   +  +CDPTTFE AVKE
Sbjct: 742  QQQIPXAEIPPNEAPTTAETSPT----------TPEFDEQVEAXVGXNCDPTTFESAVKE 791

Query: 1771 PRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGY 1592
             +W+KAMD EIAAIERN+TWEL++LPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGY
Sbjct: 792  SKWRKAMDAEIAAIERNDTWELSELPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGY 851

Query: 1591 KQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPG 1412
            KQEFGVDY+EVFAPVAR DT+RL++ALAAQNSWPIFQLDV SAFLHGNL+EQVF+DQPPG
Sbjct: 852  KQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVXSAFLHGNLEEQVFVDQPPG 911

Query: 1411 YVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKIL 1232
            Y+++  EHKVY+LKKALYGLKQAPRAWYSRI+AYF KEGF+KCPYEHTL+ K+ +GGK+L
Sbjct: 912  YIKVKNEHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTLFVKVSNGGKML 971

Query: 1231 IICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKY 1052
            I+CLYVDD+I+TG+DS MF +FKKSMM EF+MSDL          V QSD GIFISQKKY
Sbjct: 972  IVCLYVDDIIFTGNDSVMFERFKKSMMVEFEMSDL----------VVQSDTGIFISQKKY 1021

Query: 1051 VQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYA 872
            V+EILNRFQM++CN  STP + GLKL KD   +KVD   YKQIVGSLMYLTATRPDIM++
Sbjct: 1022 VREILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVDXIIYKQIVGSLMYLTATRPDIMHS 1081

Query: 871  VSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRK 692
            VSLISRYME P E+H LAAK+I RYLQGT D+GLFYKKG+ S L+GFTDSDYAGD D+R+
Sbjct: 1082 VSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRR 1141

Query: 691  STSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGP 512
            STSGYVFMLG GA+SWSSKKQ IVTLSTTEAEFVAAT CACQAIWLRKILEE+H KQ G 
Sbjct: 1142 STSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLRKILEELHLKQVGA 1201

Query: 511  TPIYCDNSSTIKLSKNPV 458
            T I+CDNSSTIKLSKNPV
Sbjct: 1202 TTIFCDNSSTIKLSKNPV 1219



 Score =  106 bits (264), Expect = 2e-19
 Identities = 49/64 (76%), Positives = 59/64 (92%)
 Frame = -3

Query: 458  LHGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGLCTL 279
            LHGR KHIDVK+YFLR+LS DGVI+L+YCRSE+Q+ADIFTK LKL +F+KLRKLLG+ TL
Sbjct: 1220 LHGRSKHIDVKYYFLRELSNDGVIDLVYCRSENQVADIFTKPLKLAAFLKLRKLLGVSTL 1279

Query: 278  EDAI 267
            ED+I
Sbjct: 1280 EDSI 1283



 Score = 76.3 bits (186), Expect = 2e-10
 Identities = 31/57 (54%), Positives = 43/57 (75%)
 Frame = -2

Query: 3522 RGRGWGNHHSTTHKPKSVDKSNVECFRCHRYGHYQSECRTNLTHKMEKELTLQKKKK 3352
            +GRG G ++STT+K  S DKSNVEC+RCHRYGHY+ ECRTN+  + E+     +K++
Sbjct: 218  QGRGQGGNYSTTYKSXSTDKSNVECYRCHRYGHYKXECRTNMNKQGEERTNFAEKEE 274


>emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]
          Length = 1041

 Score = 1291 bits (3340), Expect = 0.0
 Identities = 664/993 (66%), Positives = 750/993 (75%), Gaps = 12/993 (1%)
 Frame = -1

Query: 3400 FDTQNGERTNFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKV-FSELDESF 3224
            +D+   +     E EEE  +      +EET+  M     G NN++   K+V F E  E  
Sbjct: 95   WDSMKKKYQELIEDEEEAKV-----EVEETEITMIV---GTNNNIIVIKRVNFKEETEDV 146

Query: 3223 RNTVKFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISI 3044
              T +                L  +   T  + NV  V  LKTNLLS+GQLQEK YEI I
Sbjct: 147  EATTQ---------------QLIDQSQKTSPMLNVTDVIDLKTNLLSVGQLQEKIYEIFI 191

Query: 3043 KDGVCRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGG 2864
            KDGV +IQD KLG+IAQV MT NR FPLYLHNT H CF AKLK  AWLWHFRYGHLNFGG
Sbjct: 192  KDGVFQIQDAKLGIIAQVNMTVNRTFPLYLHNTIHLCFLAKLKYEAWLWHFRYGHLNFGG 251

Query: 2863 LKTLHQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPIN 2684
            LKTL QKNMVTGLPQI A S+ CEECVVSKQH NQFPQ KSWRAK+ALELVHSDICGPI 
Sbjct: 252  LKTLQQKNMVTGLPQIIASSQFCEECVVSKQHCNQFPQVKSWRAKKALELVHSDICGPII 311

Query: 2683 PTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGG 2504
            P SN  KRYIITFIDDYSRK WVYFLQEKSEAFVAFK+YK  VEKEVG PIK  R DRGG
Sbjct: 312  PNSNGSKRYIITFIDDYSRKIWVYFLQEKSEAFVAFKSYKALVEKEVGNPIKFFRMDRGG 371

Query: 2503 EYNSHVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEA 2324
            EYNSH FANFC  HGI RQLT  Y PQQNGVCERKN TIMN+V SLLT SG+PKSFW EA
Sbjct: 372  EYNSHEFANFCENHGIRRQLTATYIPQQNGVCERKNSTIMNMVRSLLTTSGIPKSFWLEA 431

Query: 2323 VNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEK 2144
            VNWSIHILNRSPTL VQNMTP+EAWS R+  V++FRIFGCI+YA+IPDEKRRKLD+KGEK
Sbjct: 432  VNWSIHILNRSPTLVVQNMTPKEAWSGRKLVVNHFRIFGCIAYAYIPDEKRRKLDNKGEK 491

Query: 2143 CIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFD------- 1985
            CIFLGVSD+ KAYKLYNP + KI++SRDVVFDE+  WSW  +GV++ IP DFD       
Sbjct: 492  CIFLGVSDKLKAYKLYNPSTMKIVLSRDVVFDEKDTWSWKQNGVKENIPVDFDDDEKWQQ 551

Query: 1984 ----XXXXXXXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSL 1817
                                P AT++ +RPQR R+RP WM ++EVTG +Q EDPL +F++
Sbjct: 552  PMENEQEEEVTQNVPIVDQSPLATES-QRPQRVRKRPAWMTNHEVTGVDQGEDPLTYFAM 610

Query: 1816 FSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKEN 1637
            FSDCD   FE AVKEP+W+KAMD EIAAIERN+TWEL  LPKG KTIGVKWVYKTKLKEN
Sbjct: 611  FSDCDLIIFETAVKEPKWRKAMDAEIAAIERNDTWELCDLPKGQKTIGVKWVYKTKLKEN 670

Query: 1636 GEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFL 1457
            GEVDK+KA LVAKGYKQEFGVDY+EVFA +AR DT++L              LDVK AFL
Sbjct: 671  GEVDKHKACLVAKGYKQEFGVDYKEVFASIARHDTIKL--------------LDVKLAFL 716

Query: 1456 HGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPY 1277
            HG+L E+VFIDQP GY ++G EHKVYKLKKALYGLKQ PRAWY+RI+ YF KEGF+KCPY
Sbjct: 717  HGDLKEEVFIDQPLGYAKLGNEHKVYKLKKALYGLKQTPRAWYNRIETYFLKEGFQKCPY 776

Query: 1276 EHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIE 1097
            EHTL+ KIEDGGK+ I+CLYVDDLIYTG+++AMF  FKKSMM EF+MSDLG MHYFLGIE
Sbjct: 777  EHTLFIKIEDGGKMHIVCLYVDDLIYTGNNTAMFESFKKSMMAEFEMSDLGMMHYFLGIE 836

Query: 1096 VKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVG 917
            + Q   GI ISQKKYV EIL+RFQM++CN  +TP E G+KL KD+  +KVD T YKQIVG
Sbjct: 837  MMQYSTGILISQKKYVGEILDRFQMKDCNPVNTPSEFGMKLNKDNGGKKVDDTLYKQIVG 896

Query: 916  SLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLM 737
            SLMYLT T PDIM+ VS+ISRYME P E+HLLAAKRI RYL+                  
Sbjct: 897  SLMYLTITIPDIMHVVSVISRYMEYPTEIHLLAAKRIFRYLK------------------ 938

Query: 736  GFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIW 557
               DSDYAGDLDDRKSTSGYVFM+G G +SWSSKKQ IVTLS+TEAEFV A  CACQAIW
Sbjct: 939  ---DSDYAGDLDDRKSTSGYVFMMGTGVVSWSSKKQPIVTLSSTEAEFVVAIACACQAIW 995

Query: 556  LRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            L+KIL+E+HFK+E PT IYCDNS TIKLSKNPV
Sbjct: 996  LKKILKELHFKEERPTQIYCDNSLTIKLSKNPV 1028


>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
          Length = 1246

 Score = 1210 bits (3130), Expect = 0.0
 Identities = 587/864 (67%), Positives = 674/864 (78%), Gaps = 24/864 (2%)
 Frame = -1

Query: 3391 QNGERTNFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTV 3212
            Q  ERTNFAEKEEEVSLLM CH  + T  N+WY+D+ C+NHMCGDK  FS+LDE+FRN+V
Sbjct: 262  QGEERTNFAEKEEEVSLLMACHANQGTHXNLWYIDTXCSNHMCGDKSAFSDLDETFRNSV 321

Query: 3211 KFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGV 3032
             FGDNS +SVMGKG V + +KE S ++ISNV FVP LKT LLS+GQLQEKGYEI IKDGV
Sbjct: 322  TFGDNSKVSVMGKGSVRIHSKEKSDKIISNVFFVPDLKTTLLSVGQLQEKGYEIFIKDGV 381

Query: 3031 CRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTL 2852
            CRIQDEKLGLIAQV MT NRMFPLYL NT+ +CFS KL D  WLWHFRYGHLNF  LKTL
Sbjct: 382  CRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSVKLMDEGWLWHFRYGHLNFXXLKTL 441

Query: 2851 HQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSN 2672
              KNMVTGLP I   S++CEECV  KQHR QFP+GKSWR  + LELVHSDICGPINPTSN
Sbjct: 442  QXKNMVTGLPXIQTXSQICEECVXGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSN 501

Query: 2671 RGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNS 2492
             GKRY ITFI DYS KTWVYFLQEKSEAF  FK++K+ VEKE   PIK+ R+D GGEY S
Sbjct: 502  GGKRYFITFIXDYSWKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTS 561

Query: 2491 HVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWS 2312
              F NFC  HGI++QLT AY+PQQNG  ERKN TI+N+V ++L++  +P+SFWPEAV WS
Sbjct: 562  QEFVNFCENHGIQKQLTAAYSPQQNGXSERKNXTILNMVXTILSKGHIPRSFWPEAVIWS 621

Query: 2311 IHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFL 2132
            IHILNRSPTL VQN+TPEEAW+  +PSV++FRIFGCI+YAHIPD+KR KLDDKGEKCIFL
Sbjct: 622  IHILNRSPTLVVQNVTPEEAWNGXKPSVNHFRIFGCIAYAHIPDQKRNKLDDKGEKCIFL 681

Query: 2131 GVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXX 1952
            GVS+ SKAYKLYNPI+KKI+IS D++FDE  +W W+++  +QQI A+FD           
Sbjct: 682  GVSEMSKAYKLYNPITKKIVISHDIIFDEGSFWKWDDNTTKQQIQANFDGENEEERQQPL 741

Query: 1951 XXQLYPAATQNEERP------------------------QRARRRPTWMADYEVTGYNQS 1844
              ++  A     E P                         R R+RP WM+DYEVTG +QS
Sbjct: 742  QQRIPAAKIPPNEAPTTAETSPTTPEFDEQVEATVGSSSHRVRKRPAWMSDYEVTGIDQS 801

Query: 1843 EDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKW 1664
            EDPL HF+LF DCDPTTFE AVKE +W+KAMD EI AIERN+TWEL++LP GHKTIGVKW
Sbjct: 802  EDPLTHFALFLDCDPTTFESAVKESKWRKAMDXEIVAIERNDTWELSELPXGHKTIGVKW 861

Query: 1663 VYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIF 1484
            VYKTKLKENGEVDKYKA LVAKGYKQEFGVDY+EVFAPVAR DT+RL++ALAAQNSWPIF
Sbjct: 862  VYKTKLKENGEVDKYKAXLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWPIF 921

Query: 1483 QLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFS 1304
            QLDV SAFLHGNL+EQVF+DQPPGY+++  EHKVY+LKK LYGLKQ PRAWYSRI+AYF 
Sbjct: 922  QLDVISAFLHGNLEEQVFVDQPPGYIKVKNEHKVYRLKKXLYGLKQGPRAWYSRIEAYFL 981

Query: 1303 KEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLG 1124
            KE                            DDLI+TG+DS MF +FKKSMM EF+MSDLG
Sbjct: 982  KE----------------------------DDLIFTGNDSVMFERFKKSMMVEFEMSDLG 1013

Query: 1123 GMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVD 944
             MHYFLGIEV QSD GIFISQKKYVQEILNRFQM++CN  STP + GLKL KD   +KVD
Sbjct: 1014 MMHYFLGIEVVQSDTGIFISQKKYVQEILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVD 1073

Query: 943  STFYKQIVGSLMYLTATRPDIMYA 872
            +  YKQIVGSLMYLTATRPDIM++
Sbjct: 1074 NIIYKQIVGSLMYLTATRPDIMHS 1097



 Score =  101 bits (252), Expect(3) = 5e-42
 Identities = 48/64 (75%), Positives = 58/64 (90%)
 Frame = -3

Query: 458  LHGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGLCTL 279
            LHGR KHIDVK+YFLR+LS DGVI+L+Y RSE+Q+ADIFTK LKL +F+KLRKLLG+ TL
Sbjct: 1183 LHGRSKHIDVKYYFLRELSNDGVIDLVYRRSENQVADIFTKPLKLAAFLKLRKLLGVSTL 1242

Query: 278  EDAI 267
            ED+I
Sbjct: 1243 EDSI 1246



 Score = 82.0 bits (201), Expect(3) = 5e-42
 Identities = 38/49 (77%), Positives = 42/49 (85%)
 Frame = -1

Query: 604  EAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            +A+FVAAT CACQAIWLRK LEE+H KQ G   I+CDNSSTIKLSKNPV
Sbjct: 1134 KAKFVAATACACQAIWLRKNLEELHLKQVGAITIFCDNSSTIKLSKNPV 1182



 Score = 39.7 bits (91), Expect(3) = 5e-42
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = -2

Query: 711  EISMIGRAHPVMYLCWVLVQFHGHPRSNQL 622
            EI +IG A  VM+LCW    FHGH RSN+L
Sbjct: 1098 EIKIIGGALRVMFLCWAQGLFHGHLRSNRL 1127



 Score = 79.3 bits (194), Expect = 3e-11
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = -2

Query: 3522 RGRGWGNHHSTTHKPKSVDKSNVECFRCHRYGHYQSECRTNLTHKMEKELTLQKKKK 3352
            +GRG G ++STT+K +S DKSNVEC+RCHRYGHY+SECRTN+  + E+     +K++
Sbjct: 218  QGRGQGGNYSTTYKSRSTDKSNVECYRCHRYGHYKSECRTNMNKQGEERTNFAEKEE 274


>emb|CAN74536.1| hypothetical protein VITISV_023111 [Vitis vinifera]
          Length = 1278

 Score = 1170 bits (3026), Expect = 0.0
 Identities = 599/1007 (59%), Positives = 723/1007 (71%), Gaps = 21/1007 (2%)
 Frame = -1

Query: 3415 RMPNQFDTQNGERTNFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSEL 3236
            ++PN  D + GE++N+AEK+E  +LLM   V E+ Q  +WY+D+GC+NHMCG        
Sbjct: 273  KLPN--DKEKGEKSNYAEKKEVETLLMAAQVNEQPQAEVWYVDTGCSNHMCG-------- 322

Query: 3235 DESFRNTVKFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGY 3056
              SFR+TV FGD ST++VMGKG + ++TK    + IS V +VP LK+NLLS GQLQEKGY
Sbjct: 323  --SFRSTVSFGDCSTVNVMGKGDINIRTKNGFVETISYVFYVPDLKSNLLSAGQLQEKGY 380

Query: 3055 EISIKDGVCRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHL 2876
             I+I+ G C I D   G I  V+M +NR+FPL + +   S   A++KD +WLWH RYGHL
Sbjct: 381  IITIQKGACEIYDPSRGAIDVVQMASNRLFPLKIDSVQ-SFLMAEVKDLSWLWHLRYGHL 439

Query: 2875 NFGGLKTLHQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDIC 2696
            NFGGLKTL QK+MVTGLPQI+ PS+VCEECVV KQHR+QFPQGKS RAK           
Sbjct: 440  NFGGLKTLQQKHMVTGLPQISIPSQVCEECVVGKQHRSQFPQGKSRRAKN---------- 489

Query: 2695 GPINPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRT 2516
                                           EKSEAF AFK++K  VEKE G  IK+LRT
Sbjct: 490  -------------------------------EKSEAFSAFKSFKARVEKETGRSIKILRT 518

Query: 2515 DRGGEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSF 2336
            DRGGEY S+ F +FC+  GI R+LT AYTPQQNGV ERKNRTI+N+V SLL R  +PKSF
Sbjct: 519  DRGGEYCSNEFEHFCDDQGIRRELTAAYTPQQNGVSERKNRTILNMVRSLLXRGKIPKSF 578

Query: 2335 WPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDD 2156
            WP AVNWSIH+LNRSPT +VQNMTPEEAW+                      EKR+KLDD
Sbjct: 579  WPXAVNWSIHVLNRSPTFSVQNMTPEEAWN----------------------EKRKKLDD 616

Query: 2155 KGEKCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWN----------NDG--- 2015
            KGEKC+FL  S+ SKAYKL+NP++KKI+ SRDV+F EE  W+WN          ND    
Sbjct: 617  KGEKCVFLXXSEASKAYKLFNPLTKKIVTSRDVIFXEESTWNWNGQXPTQVIFDNDAEEE 676

Query: 2014 ----VQQQIPADFDXXXXXXXXXXXXXQLYPAATQN---EERPQRARRRPTWMADYEVTG 1856
                +QQ+IP                      A  N   E R +R R+RP WM D+EVTG
Sbjct: 677  RQQLLQQRIPTVSIPKSPPNDASTATETSSTPAESNVVAESRLRRVRKRPAWMQDFEVTG 736

Query: 1855 YNQSE-DPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKT 1679
                  D + H++L SDCDP TF+EA+K+ +W KAM+EEI +IE+NN+WEL +LPKG K+
Sbjct: 737  VQSDNYDTIAHYALLSDCDPITFQEAIKDLKWHKAMNEEIGSIEKNNSWELVELPKGQKS 796

Query: 1678 IGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQN 1499
            IGVKWVYKTKL ++G VDKYKA LVAKGYKQEFGVDY+ VFAPVA+LDT+ L++++AAQN
Sbjct: 797  IGVKWVYKTKLNKDGGVDKYKAXLVAKGYKQEFGVDYKXVFAPVAKLDTIXLVLSMAAQN 856

Query: 1498 SWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRI 1319
            SW I QLDVKSAFLHG L+E+V+IDQPPGYV+ G E++VYKLKKALYGLKQAPRAWYSRI
Sbjct: 857  SWSIHQLDVKSAFLHGXLEEEVYIDQPPGYVKQGYENQVYKLKKALYGLKQAPRAWYSRI 916

Query: 1318 DAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFD 1139
            DAYF +EGF KCPYEHTLYTK     KILI+CLYVDDLIYT ++  M   FKKSMM  FD
Sbjct: 917  DAYFIEEGFIKCPYEHTLYTKYGVDKKILIVCLYVDDLIYTSNNKTMLADFKKSMMKXFD 976

Query: 1138 MSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSD 959
            M+D+G MHYFLGIEV QS  G+FISQKKY  EIL++F +++CNS  TP EVGLKL K   
Sbjct: 977  MTDMGLMHYFLGIEVVQSSAGVFISQKKYALEILDKFMLKDCNSVITPSEVGLKLSKSGA 1036

Query: 958  EEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSD 779
             ++VDST YKQIVGSLMYLT+TRPDIM+AV+LI RYME P E+HLLAAKRI  YL+GT D
Sbjct: 1037 XKRVDSTLYKQIVGSLMYLTSTRPDIMHAVNLIXRYMENPTEVHLLAAKRIFXYLKGTVD 1096

Query: 778  YGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEA 599
            +G+ YK+GE SSL+GF+DSDYA DLDDRKSTS  VFML  GAI+WSSK Q IVTLSTTE 
Sbjct: 1097 FGILYKRGERSSLIGFSDSDYAXDLDDRKSTSXAVFMLNSGAITWSSKXQQIVTLSTTEV 1156

Query: 598  EFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            EFVA  + +CQAIWLR++LE ++ +Q+GPT IYCDN S IKLSKN V
Sbjct: 1157 EFVAXASSSCQAIWLRRLLEVLYNQQQGPTVIYCDNLSAIKLSKNLV 1203



 Score = 90.5 bits (223), Expect = 1e-14
 Identities = 39/64 (60%), Positives = 54/64 (84%)
 Frame = -3

Query: 458  LHGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGLCTL 279
            LHGR KHIDV+++FLRDL +DGVI+L++C+SEDQIADI TK LK   F+KLR +LG+C+ 
Sbjct: 1204 LHGRSKHIDVRYHFLRDLCKDGVIDLVFCKSEDQIADILTKPLKPVVFMKLRSMLGVCSS 1263

Query: 278  EDAI 267
            ++ +
Sbjct: 1264 KEVV 1267


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score = 1139 bits (2947), Expect = 0.0
 Identities = 563/1000 (56%), Positives = 707/1000 (70%), Gaps = 28/1000 (2%)
 Frame = -1

Query: 3373 NFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNS 3194
            N+A+ +EE+ L+    + +  +++MW+LDSGC+NHMCG K+ F + D SFR++VK G+N+
Sbjct: 269  NYADTQEEMLLMAYVDMNKAHREDMWFLDSGCSNHMCGTKEYFLDFDGSFRDSVKLGNNT 328

Query: 3193 TISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDE 3014
            ++ V GKG                V +VP LK NLLS+GQLQEKG  I  + G C++   
Sbjct: 329  SMVVTGKG----------------VFYVPELKNNLLSIGQLQEKGLTILFQSGKCKVFHP 372

Query: 3013 KLGLIAQVKMTANRMFPLYLHNT--SHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKN 2840
            + G+I ++KM++NRMF L+  +   + +CF+A  +D   LWH RYGHL+F GLKTL QK 
Sbjct: 373  ERGVITEMKMSSNRMFMLHAISQPIASTCFNAITEDIVHLWHCRYGHLSFKGLKTLQQKK 432

Query: 2839 MVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNRGKR 2660
            MV GLPQ+ +P  +C++C+V KQ R  FP   +WRA + L LVH+DI GPI P SN  KR
Sbjct: 433  MVNGLPQLKSPLRLCKDCLVGKQQRYSFPWKSTWRASQILXLVHADIXGPIKPISNSKKR 492

Query: 2659 YIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFA 2480
            Y+ITF DD+SRKTWVYFL EKSEAFV FK +K+ VEKE    I+ L TDRGGE+ S  F 
Sbjct: 493  YLITFTDDFSRKTWVYFLIEKSEAFVVFKRFKIHVEKETNSFIRALXTDRGGEFTSXEFT 552

Query: 2479 NFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHIL 2300
            NFC+ +GI RQLT AYTPQQN V ERKNRTIMN+V S+++   +PK FWPEAVNW++H+L
Sbjct: 553  NFCDVNGIRRQLTAAYTPQQNXVXERKNRTIMNMVRSMISEKKIPKPFWPEAVNWTVHVL 612

Query: 2299 NRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSD 2120
            NRSPTLAVQN TP EAWS  +PSV++FR+FGCIS+ H+PD KR KLDDK   C+ LGVS+
Sbjct: 613  NRSPTLAVQNKTPXEAWSGVKPSVEHFRVFGCISHVHVPDNKRTKLDDKSLSCVLLGVSE 672

Query: 2119 QSKAYKLYNPISKKIIISRDVVFDEEKYWSW--------------------------NND 2018
                               DVVF+E K W W                          N +
Sbjct: 673  G------------------DVVFEEHKNWDWDKTYEKSIVCDLEWGDLEEEATMFDENEE 714

Query: 2017 GVQQQIPADFDXXXXXXXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSED 1838
            G +  + AD +                P++T      +R RR P WM DY++      ED
Sbjct: 715  GTESDLEADIEAEEDNFSSDSLTEDSSPSSTA-----ERIRRPPAWMRDYDIGEGLSEED 769

Query: 1837 PLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVY 1658
               H ++F+  DP  FE+AVK  +W+KAMD E+AAI +N TWELT+LP+G K IGVKW+Y
Sbjct: 770  NEAHLAMFAAADPIHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEGGKKIGVKWIY 829

Query: 1657 KTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQL 1478
            KTK  ENGEVDKYKARLVAKGY Q+ GVDY EVFAPVAR++T+RL+VALAAQ  W I+QL
Sbjct: 830  KTKFNENGEVDKYKARLVAKGYTQQHGVDYTEVFAPVARMETIRLVVALAAQRKWTIYQL 889

Query: 1477 DVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKE 1298
            DVKSAFLHG L+E+VF++QP GYV+ G E KVYKLKKALYGLKQAP AWYS I+AYF KE
Sbjct: 890  DVKSAFLHGELNEEVFVEQPCGYVQKGHEQKVYKLKKALYGLKQAPXAWYSXIEAYFMKE 949

Query: 1297 GFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGM 1118
            GF KC YEHTL+ K    GK+LI+ LYVDDLI+TG+D  MF  FK+SM DEFDM+DLG M
Sbjct: 950  GFEKCDYEHTLFIKTRKEGKVLIVSLYVDDLIFTGNDELMFTDFKRSMKDEFDMTDLGKM 1009

Query: 1117 HYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDST 938
             YFLG+EV Q   GIFISQKKY  E+L RF M   NS   PI  G KL+KD    KVD T
Sbjct: 1010 RYFLGLEVLQRSDGIFISQKKYALEVLQRFGMDKSNSVHNPIVPGFKLMKDEGGVKVDKT 1069

Query: 937  FYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKK 758
            +YKQ+VGSLMYL ATRPD+M+ VSLISRYME P E+HL AAKR+LRYLQGT+++G+FY+K
Sbjct: 1070 YYKQVVGSLMYLXATRPDMMFVVSLISRYMENPTELHLQAAKRVLRYLQGTTEFGIFYRK 1129

Query: 757  GENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATT 578
            G +  L+ +T+SD+AGDLD+RKSTSGYVF+L  GAISWSSKKQ IV+LS+TEAEF+AA +
Sbjct: 1130 GGDDELVTYTBSDHAGDLDERKSTSGYVFLLSSGAISWSSKKQPIVSLSSTEAEFIAAAS 1189

Query: 577  CACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            CACQA+WL+++L ++   Q  PT I+CD+SS IKLSKNPV
Sbjct: 1190 CACQAVWLKRVLGKLGQNQGKPTIIHCDSSSAIKLSKNPV 1229


>gb|KYP71150.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1228

 Score = 1128 bits (2918), Expect = 0.0
 Identities = 546/953 (57%), Positives = 706/953 (74%), Gaps = 3/953 (0%)
 Frame = -1

Query: 3304 NMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESSTQVIS 3125
            ++WYLD+GC+NHMCG K++F  LDE+ ++TVKFG+NS I ++GKGRV ++ K+ S   IS
Sbjct: 227  DIWYLDTGCSNHMCGKKELFFSLDETVKSTVKFGNNSNIPILGKGRVAIKLKDGSQNFIS 286

Query: 3124 NVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLYLHNT 2945
            +V + PGL  NLLSMGQL EKGY + I  G C + D+    IA+VKMT NR+FPL + + 
Sbjct: 287  DVFYAPGLHHNLLSMGQLSEKGYNMQIHHGYCTLIDKSGRFIAKVKMTPNRLFPLKICHE 346

Query: 2944 SHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVSKQHR 2765
              SC S+ + +  WLWH R+GH +F GL  L +K  V+GLP +  P+ VCE C + K+HR
Sbjct: 347  KFSCLSSIIPNDDWLWHMRFGHFHFSGLNYLSKKEYVSGLPIVNIPNGVCETCEIGKKHR 406

Query: 2764 NQFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAF 2585
              FP G SWRAK+ LE+VHSD+C    PT   G RY ITFIDD+SRK WVYFL++KSEA 
Sbjct: 407  ESFPTGVSWRAKKLLEIVHSDLCMVEIPTHG-GSRYFITFIDDFSRKAWVYFLKQKSEAC 465

Query: 2584 VAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCE 2405
             AFK++K FVEK+ GC IK LRTDRG EY +   ANF + HGI+ Q+TT YTPQQNGV E
Sbjct: 466  DAFKSFKAFVEKQSGCKIKALRTDRGQEYLA--CANFFDHHGIQHQMTTRYTPQQNGVAE 523

Query: 2404 RKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVD 2225
            RKNRTIM++V  +L    +P+ FW EAV+ +++ILNR PT +V + TPEEAWS R+PS+ 
Sbjct: 524  RKNRTIMDMVRCMLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKPSIR 583

Query: 2224 YFRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDE 2045
            + +IFGCI+YAH+PD+ R+KLDDKGEKCIF+G S  SKAYKLYNP++KK+IISRDV FDE
Sbjct: 584  HLKIFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVTFDE 643

Query: 2044 EKYWSWNNDGVQQQI--PADFDXXXXXXXXXXXXXQLYPAATQNEERPQRARRRPTWMAD 1871
            E  W W+    ++ +  P +++                P   +   RPQR RR P  + D
Sbjct: 644  EGMWDWSFKAQKEPVINPENYEEENGHVNPT-------PDEPETSSRPQRQRRLPARLED 696

Query: 1870 YEVTGYNQ-SEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLP 1694
            Y V   N  S++ +I+F+LF+DC+P TFEEA     W+KAMDEEI AIE+N TWELT LP
Sbjct: 697  YVVGNDNDPSDEEIINFALFADCEPVTFEEASNNQYWRKAMDEEIHAIEKNQTWELTDLP 756

Query: 1693 KGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVA 1514
               K IGVKWVYKTK K +GE+D+ KARLV KGYKQ+ G+DY EVFAPVARLDT+R+L++
Sbjct: 757  ADKKPIGVKWVYKTKYKSSGEIDRLKARLVVKGYKQKPGIDYFEVFAPVARLDTIRMLIS 816

Query: 1513 LAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRA 1334
            L+AQN+W I Q+DVKSAFL+G L+E+V+++QP GY   G+E KVY+LKKALYGLKQAPRA
Sbjct: 817  LSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYEVKGKEDKVYRLKKALYGLKQAPRA 876

Query: 1333 WYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSM 1154
            WY +ID+YF   GF++CP+EHTLY K  D   ILI+CLYVDDLI+TG++  MFV+F+++M
Sbjct: 877  WYKKIDSYFVDNGFQRCPFEHTLYIKSVDPDNILIVCLYVDDLIFTGNNPKMFVEFREAM 936

Query: 1153 MDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKL 974
            +  F+M+DLG M YFLGIEV Q D GIFISQKK+  +IL +F+M+N    STP+E  LKL
Sbjct: 937  VKCFEMTDLGLMSYFLGIEVDQRDDGIFISQKKFAGDILKKFKMENSKPISTPVEEKLKL 996

Query: 973  IKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYL 794
              D   +KV+ T YK ++GSL YLTATRPDI+Y V L+SR+ME PR+ H  AAKRILRY+
Sbjct: 997  TSDIGGKKVNPTLYKSLIGSLRYLTATRPDIVYGVGLLSRFMEKPRDSHWQAAKRILRYI 1056

Query: 793  QGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTL 614
            +GT   G+FY K  + +L+G+TDSD+AGD++ RKSTSGY F LG G ISWSSKKQ +V L
Sbjct: 1057 KGTLTEGIFYDKNIDVNLVGYTDSDWAGDIETRKSTSGYAFNLGSGTISWSSKKQQVVAL 1116

Query: 613  STTEAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPVY 455
            ST EAE++AA +CA QA+WLR++LE ++ KQ  PT I+CDN S I L KNPV+
Sbjct: 1117 STAEAEYIAAASCATQAVWLRRMLEVMYQKQNTPTMIFCDNKSAIALCKNPVF 1169



 Score = 66.2 bits (160), Expect = 3e-07
 Identities = 27/56 (48%), Positives = 43/56 (76%)
 Frame = -3

Query: 455  HGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGL 288
            HGR KHID++F+ +R+L  +  + + YC +E+Q+ADIFTK LK+  F KL+++LG+
Sbjct: 1170 HGRSKHIDIRFHKIRELVAEKEVTIEYCSTEEQVADIFTKPLKVELFCKLKRMLGM 1225


>gb|KYP77007.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1228

 Score = 1128 bits (2917), Expect = 0.0
 Identities = 541/952 (56%), Positives = 708/952 (74%), Gaps = 1/952 (0%)
 Frame = -1

Query: 3301 MWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESSTQVISN 3122
            +WYLD+GC+NHMCG K++FS LDE+ ++TVKFG+NS I ++GKG+V ++ K+ +   IS+
Sbjct: 228  IWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPILGKGQVAIRLKDGTQNFISD 287

Query: 3121 VLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLYLHNTS 2942
            V + PGL  NLLS+GQL EKGY I I DG C + D+   LIA+VKM+ NR+FPL +    
Sbjct: 288  VFYAPGLHHNLLSLGQLSEKGYNIQIHDGYCMLIDKNRRLIAKVKMSPNRLFPLNVQYDK 347

Query: 2941 HSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVSKQHRN 2762
              C S+ +++  WLWH R+GH +F GL  L +K  V+GLP I  P  +CE C + K+HR 
Sbjct: 348  IPCLSSIIQNDDWLWHMRFGHYHFSGLNFLSRKEYVSGLPVINIPKGICETCEIGKKHRE 407

Query: 2761 QFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFV 2582
             FP GKSWRA++ LE+VHSD+C  +   S+ G RY ITFIDD+SRK+WVYFL++KSEA  
Sbjct: 408  SFPTGKSWRARKPLEIVHSDLC-MVEIPSHGGSRYFITFIDDFSRKSWVYFLKQKSEACD 466

Query: 2581 AFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCER 2402
            AFK++K  VEK+  C IK LRTDRG EY +   A+F + HGI+ Q+TT YTPQQNGV ER
Sbjct: 467  AFKSFKALVEKQSSCKIKALRTDRGQEYLA--CADFIDHHGIQHQMTTRYTPQQNGVAER 524

Query: 2401 KNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDY 2222
            KNRTIM++V  +L    +P+ FW EAV+ +++ILNR PT +V + TPEEAWS R+PS+ +
Sbjct: 525  KNRTIMDMVRCMLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKPSIRH 584

Query: 2221 FRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEE 2042
             RIFGCI+YAH+PD+ R+KLDDKGEKCIF+G S  SKAYKLYNP++KK+IISRDV FDEE
Sbjct: 585  LRIFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVTFDEE 644

Query: 2041 KYWSWNNDGVQQQIPADFDXXXXXXXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEV 1862
              W W+     Q++PA                   P   +   RPQR RR P  + DY V
Sbjct: 645  GMWDWSFKA--QKVPA---VNSENYEEENGHVDTTPDEPETSSRPQRQRRLPARLEDYVV 699

Query: 1861 TGYNQ-SEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGH 1685
               N  S++ +I+F+LF+DC+P TFEEA     W+KAMDEEI AIE+N TWELT LP   
Sbjct: 700  GNDNDPSDEEIINFALFADCEPVTFEEASNNQYWRKAMDEEIHAIEKNQTWELTDLPANK 759

Query: 1684 KTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAA 1505
            + IGVKWVYKTK K NGE+D++KARLVAKGYKQ+ G+DY EVFAPVARLDT+R+L++++A
Sbjct: 760  RQIGVKWVYKTKYKSNGEIDRFKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLISISA 819

Query: 1504 QNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYS 1325
            QN+W I Q+DVKSAFL+G L+E+V+++QP GY   G+E KVY+LKKALYGLKQAPRAWY 
Sbjct: 820  QNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYKIKGKEDKVYRLKKALYGLKQAPRAWYK 879

Query: 1324 RIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDE 1145
            +ID+YF   GF++CP+EHTLY K  D   ILI+CLYVDDLI+TG++  MF +F+++M+  
Sbjct: 880  KIDSYFVDNGFQRCPFEHTLYIKSVDPDNILIVCLYVDDLIFTGNNPKMFAEFREAMVKS 939

Query: 1144 FDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKD 965
            F+M+DLG M YFLGIEV Q D GIFISQKK+  +IL +F+M+N    STP+E  LKL  +
Sbjct: 940  FEMTDLGLMSYFLGIEVDQRDDGIFISQKKFAGDILKKFKMENSKPISTPVEEKLKLTSN 999

Query: 964  SDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGT 785
             + +K++ T YK ++GSL YLTATRPDI+Y V L+SR+ME PR+ H  AAKRILRY++GT
Sbjct: 1000 IEGKKINPTLYKSLIGSLRYLTATRPDIVYGVGLLSRFMEKPRDSHWQAAKRILRYIKGT 1059

Query: 784  SDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTT 605
               G+FY K  + +L+G+TDSD+AGD++ RKSTSGY F LG G ISWSSKKQ +V LST 
Sbjct: 1060 LTEGIFYDKDFDVNLVGYTDSDWAGDIETRKSTSGYAFNLGSGTISWSSKKQQVVALSTA 1119

Query: 604  EAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPVYME 449
            EAE++AA +CA QA+WLR++LE +H KQ+ PT I+CDN S I + KN V+ E
Sbjct: 1120 EAEYIAAASCATQAVWLRRMLEVMHQKQDNPTVIFCDNKSAIAICKNLVFHE 1171



 Score = 63.2 bits (152), Expect = 2e-06
 Identities = 28/56 (50%), Positives = 41/56 (73%)
 Frame = -3

Query: 455  HGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGL 288
            H R KHID++F+ +R+L  +  + + YC +E+QIADIFTK LK   F KL+K+LG+
Sbjct: 1170 HERSKHIDIRFHKIRELVTEKEVLINYCHTEEQIADIFTKPLKAELFYKLKKMLGM 1225


>gb|KYP79141.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 990

 Score = 1105 bits (2857), Expect = 0.0
 Identities = 539/941 (57%), Positives = 692/941 (73%), Gaps = 3/941 (0%)
 Frame = -1

Query: 3268 MCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNL 3089
            MCG K++F  LDE+ ++TVKFG+NS I ++GKGRV ++ K+ S   IS+V + PGL  NL
Sbjct: 1    MCGKKELFFSLDETVKSTVKFGNNSNIPILGKGRVAIKLKDGSQNFISDVFYAPGLHHNL 60

Query: 3088 LSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDA 2909
            LSMGQL EKGY + I  G C + D+    IA+VKMT NR+FPL + +   SC S+ + + 
Sbjct: 61   LSMGQLSEKGYNMQIHHGYCTLIDKSGRFIAKVKMTPNRLFPLKICHEKFSCLSSIIPND 120

Query: 2908 AWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAK 2729
             WLWH R+GH +F GL  L +K  V+GLP +  P+ VCE C + K+HR  FP G SWRAK
Sbjct: 121  DWLWHMRFGHFHFSGLNYLSKKEYVSGLPIVNIPNGVCETCEIGKKHRESFPTGVSWRAK 180

Query: 2728 RALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEK 2549
            + LE+VHSD+C    PT   G RY ITFIDD+SRK WVYFL++KSEA  AFK++K FVEK
Sbjct: 181  KLLEIVHSDLCMVEIPTHG-GSRYFITFIDDFSRKAWVYFLKQKSEACDAFKSFKAFVEK 239

Query: 2548 EVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*S 2369
            + GC IK LRTDRG EY +   ANF + HGI+ Q+TT YTPQQNGV ERKNRTIM++V  
Sbjct: 240  QSGCKIKALRTDRGQEYLA--CANFFDHHGIQHQMTTRYTPQQNGVAERKNRTIMDMVRC 297

Query: 2368 LLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAH 2189
            +L    +P+ FW EAV+ +++ILNR PT +V + TPEEAWS R+PS+ + +IFGCI+YAH
Sbjct: 298  MLKAKQMPREFWAEAVSTAVYILNRCPTKSVCDKTPEEAWSGRKPSIRHLKIFGCIAYAH 357

Query: 2188 IPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQ 2009
            +PD+ R+KLDDKGEKCIF+G S  SKAYKLYNP++KK+IISRDV FDEE  W W+    +
Sbjct: 358  VPDQLRKKLDDKGEKCIFIGYSTNSKAYKLYNPVTKKVIISRDVTFDEEGMWDWSFKAQK 417

Query: 2008 QQI--PADFDXXXXXXXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQ-SED 1838
            + +  P +++                P   +   RPQR RR P  + DY V   N  S++
Sbjct: 418  EPVINPENYEEENGHVNPT-------PDEPETSSRPQRQRRLPARLEDYVVGNDNDPSDE 470

Query: 1837 PLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVY 1658
             +I+F+LF+DC+P TFEEA     W+KAMDEEI AIE+N TWELT LP   K IGVKWVY
Sbjct: 471  EIINFALFADCEPVTFEEASNNQYWRKAMDEEIHAIEKNQTWELTDLPADKKPIGVKWVY 530

Query: 1657 KTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQL 1478
            KTK K +GE+D+ KARLV KGYKQ+ G+DY EVFAPVARLDT+R+L++L+AQN+W I Q+
Sbjct: 531  KTKYKSSGEIDRLKARLVVKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKIHQM 590

Query: 1477 DVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKE 1298
            DVKSAFL+G L+E+V+++QP GY   G+E KVY+LKKALYGLKQAPRAWY +ID+YF   
Sbjct: 591  DVKSAFLNGTLEEEVYVEQPAGYEVKGKEDKVYRLKKALYGLKQAPRAWYKKIDSYFVNN 650

Query: 1297 GFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGM 1118
            GF+KCP+EHTLY K  D   ILI+CLYVDDLI+TG++  MF KF+++M   F+M+DLG M
Sbjct: 651  GFQKCPFEHTLYIKSVDLDNILIVCLYVDDLIFTGNNPKMFAKFREAMAKCFEMTDLGLM 710

Query: 1117 HYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDST 938
             YFLGIEV Q D GIFISQKK+  +IL +F+M+N    STP+E  LKL  D   +KV+ T
Sbjct: 711  SYFLGIEVDQRDDGIFISQKKFAGDILKKFKMENSKPISTPVEEKLKLTSDIGGKKVNPT 770

Query: 937  FYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKK 758
             YK ++GSL YLTATRPDI+Y V L+SR+ME PR+ H  AAKRILRY++GT   G+FY K
Sbjct: 771  LYKSLIGSLRYLTATRPDIVYGVGLLSRFMEKPRDSHWQAAKRILRYIKGTLTEGIFYDK 830

Query: 757  GENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATT 578
              + +L+G+TDSD+AGD++ RKSTSGY F LG G ISWSSKKQ +V LST EAE++AA +
Sbjct: 831  NIDVNLVGYTDSDWAGDIETRKSTSGYAFNLGSGTISWSSKKQQVVALSTAEAEYIAAAS 890

Query: 577  CACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPVY 455
            CA QA+WLR++LE ++ KQ  PT I+CDN S I L KNPV+
Sbjct: 891  CATQAVWLRRMLEVMYQKQNTPTMIFCDNKSAIALCKNPVF 931



 Score = 66.2 bits (160), Expect = 3e-07
 Identities = 27/56 (48%), Positives = 43/56 (76%)
 Frame = -3

Query: 455  HGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGL 288
            HGR KHID++F+ +R+L  +  + + YC +E+Q+ADIFTK LK+  F KL+++LG+
Sbjct: 932  HGRSKHIDIRFHKIRELVAEKEVTIEYCSTEEQVADIFTKPLKVELFCKLKRMLGM 987


>emb|CAN66690.1| hypothetical protein VITISV_023209 [Vitis vinifera]
          Length = 1202

 Score = 1086 bits (2809), Expect = 0.0
 Identities = 561/958 (58%), Positives = 671/958 (70%), Gaps = 4/958 (0%)
 Frame = -1

Query: 3319 EETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESS 3140
            ++++  +WY+D+GCNNHMCG               + FGD ST++VMGKG + ++TK   
Sbjct: 273  DKSKAKVWYVDTGCNNHMCG---------------MSFGDCSTVNVMGKGDINIRTKNGF 317

Query: 3139 TQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPL 2960
             + ISNV +VP LK+NL S GQL EKGY I+I+ G C I D   G I  V+M +NR+FPL
Sbjct: 318  VETISNVFYVPDLKSNLXSAGQLXEKGYIITIQKGACEIYDPSRGAIXVVQMASNRLFPL 377

Query: 2959 YLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVV 2780
             + +   S   A++KD +WLWH RYGHLNFGGLKTL QK+MVTGLPQI+ PS+VCEECVV
Sbjct: 378  KIDSVQ-SFLMAEVKDLSWLWHLRYGHLNFGGLKTLQQKHMVTGLPQISIPSQVCEECVV 436

Query: 2779 SKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQE 2600
             KQHR+QFPQGKS RAK  LEL                                     E
Sbjct: 437  GKQHRSQFPQGKSRRAKNVLEL-------------------------------------E 459

Query: 2599 KSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQ 2420
            KSEAF AFK++K  VEKE G  IK+LRTDRGGEY S+ F +FC+  GI R+LT AYTPQQ
Sbjct: 460  KSEAFSAFKSFKARVEKETGRSIKILRTDRGGEYCSNEFEHFCDDQGIRRELTAAYTPQQ 519

Query: 2419 NGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRR 2240
            NGV ERKNRTI+N+V SLL R  +PKSFWPEAVNWSIH+LNRSPT  VQNMTPEEAWS  
Sbjct: 520  NGVSERKNRTILNMVRSLLARGKIPKSFWPEAVNWSIHVLNRSPTFXVQNMTPEEAWSGX 579

Query: 2239 RPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRD 2060
            +P+VD+F+IFGCI+YAH+PDEKR+KLDDKGEKC+FLG   Q                   
Sbjct: 580  KPAVDHFKIFGCIAYAHVPDEKRKKLDDKGEKCVFLGQPTQ------------------- 620

Query: 2059 VVFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXXXXQLYPAATQN---EERPQRARRR 1889
            V+FD +         +QQQIP                     AA  N   E R +R R+R
Sbjct: 621  VIFDNDXEEE-RQQLLQQQIPTVSIPESPPNDAPTXAETSSTAAESNVVAESRLRRVRKR 679

Query: 1888 PTWMADYEVTGYNQSE-DPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTW 1712
            P WM D+EVTG      D + H++L SDCDP TF+EA+K+ +W KAM+EEI +IE+NN+W
Sbjct: 680  PAWMQDFEVTGVQSDNYDTIAHYALLSDCDPITFQEAIKDLKWHKAMNEEIGSIEKNNSW 739

Query: 1711 ELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDT 1532
            EL +LPKG K+IGVKWVYKTKL ++G VDKYKARLVAKGYKQEF                
Sbjct: 740  ELVELPKGQKSIGVKWVYKTKLNKDGGVDKYKARLVAKGYKQEFRSG------------- 786

Query: 1531 VRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGL 1352
                            Q DVKSAFLHG L+E+V+IDQPPGYV+ G E++ YKLKKALYGL
Sbjct: 787  ---------------LQRDVKSAFLHGELEEEVYIDQPPGYVKQGYENQXYKLKKALYGL 831

Query: 1351 KQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFV 1172
            KQAPRAWYSRIDAYF++EGF KCPYEHTLYTK     KILI+CLYVDDLIYT ++  M  
Sbjct: 832  KQAPRAWYSRIDAYFTEEGFIKCPYEHTLYTKYGVDKKILIVCLYVDDLIYTSNNKTMLA 891

Query: 1171 KFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPI 992
             FKKSMM EFDM+D+G MHYFLGIEV QS  G+FISQKKY  EIL++F +++CNS  TP 
Sbjct: 892  DFKKSMMKEFDMTDMGLMHYFLGIEVVQSSXGVFISQKKYALEILDKFMLKDCNSVITPS 951

Query: 991  EVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAK 812
            EVGLKL K    ++VDST YKQI GSLMYLT+TRPDIM+AV+LISRYME P E+HLLAAK
Sbjct: 952  EVGLKLSKSGAGKRVDSTLYKQIXGSLMYLTSTRPDIMHAVNLISRYMENPTEVHLLAAK 1011

Query: 811  RILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKK 632
            RI RYL+GT D+G+ YK+GE S L+GF+DSDYAGDLDDRKSTSG VFML   AI+WSSKK
Sbjct: 1012 RIFRYLKGTVDFGILYKRGEKSXLIGFSDSDYAGDLDDRKSTSGAVFMLNSXAITWSSKK 1071

Query: 631  QSIVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            Q I TLSTTEAEFV A + +CQAIWLR++LE ++ +Q+GPT IYCDN   IKLSKN V
Sbjct: 1072 QQIXTLSTTEAEFVXAASSSCQAIWLRRLLEVLYNQQQGPTVIYCDNLXAIKLSKNLV 1129



 Score = 85.5 bits (210), Expect = 4e-13
 Identities = 37/64 (57%), Positives = 52/64 (81%)
 Frame = -3

Query: 458  LHGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGLCTL 279
            LHGR KHIDV+++FL DL +DGVI+L++C+SEDQI DI TK LK   F+KLR +LG+C+ 
Sbjct: 1130 LHGRSKHIDVRYHFLCDLCKDGVIDLVFCKSEDQIXDILTKPLKPAVFMKLRSMLGVCSS 1189

Query: 278  EDAI 267
            ++ +
Sbjct: 1190 KEVV 1193


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score = 1085 bits (2805), Expect = 0.0
 Identities = 527/1014 (51%), Positives = 706/1014 (69%), Gaps = 7/1014 (0%)
 Frame = -1

Query: 3478 EVSRQVEC*VFQMSQVWTLSIRMPNQFDTQNGERTNFAEKEE-EVSLLMVCHVMEETQQN 3302
            E   QV+C        ++   R  ++ D +N         E+ E S+ +     E+ +++
Sbjct: 291  ENKSQVQCYNCNKYGHFSYECRSTHKVDERNHVAVAAEGNEKVESSVFLTYGENEDRKRS 350

Query: 3301 MWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESSTQVISN 3122
            +WYLD+G +NHMCG K++F+ELDE+    + FGDNS   + GKG+V +  +    + IS+
Sbjct: 351  VWYLDNGASNHMCGRKELFTELDETVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISD 410

Query: 3121 VLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLYLHNTS 2942
            V +VP LK+NL+S+GQL EKGYE+ +KD    I+++   L+ +V MT NR+F L + +  
Sbjct: 411  VYYVPALKSNLISLGQLLEKGYEVHMKDRSLAIRNKSGELVVRVDMTRNRLFTLDIESGE 470

Query: 2941 HSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVSKQHRN 2762
              C    LK+ +WLWH RYGHL F GLK L + NMV GLP I  P ++CE CV  KQHR 
Sbjct: 471  VKCMKTDLKNESWLWHLRYGHLGFSGLKLLSKTNMVNGLPSINHPDQLCEACVKGKQHRQ 530

Query: 2761 QFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFV 2582
            +F  GKS RA+R LE+VH+DI GP +  S  G RY +TFIDDYSRK WVYFL+ KSEA  
Sbjct: 531  KFEVGKSRRARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALE 590

Query: 2581 AFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCER 2402
             FK +K  VEK+ G  +K+LR+DRGGEY + ++ +FC  HGI  QLT   TPQQNGV ER
Sbjct: 591  KFKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAER 650

Query: 2401 KNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDY 2222
            KNRTI+++  S++    +P++FW EAV  ++++LN+ PT +V++ TPEEAWS  +P V +
Sbjct: 651  KNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGH 710

Query: 2221 FRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEE 2042
             +IFGCI+YAH+P+++R+KLDD+GEKCIF+G   +SKAY+LYNP++KK+IISRDV FDE 
Sbjct: 711  LKIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEA 770

Query: 2041 KYWSWNNDG--VQQQIPADFDXXXXXXXXXXXXXQLYPAATQNEERPQRARRRPTWMAD- 1871
             YW W+ +   V+     + D                P++  +          PT     
Sbjct: 771  DYWRWSEEEKKVEGLFFNEDDNNQEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRSL 830

Query: 1870 ---YEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTK 1700
               Y  T   +++     F L ++CDP T+EEA++  +W+KAMDEEIAAI RN+TWELT 
Sbjct: 831  NDIYNSTEPVETQFDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELTS 890

Query: 1699 LPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLL 1520
            LP+GH  IGVKWVYKTK  + G+V+KYKARLVAKGYKQ  GVDY E+FAPVAR+DT+RLL
Sbjct: 891  LPEGHSPIGVKWVYKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLL 950

Query: 1519 VALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAP 1340
            +A+AAQ  W I+Q+DVKSAFL+G L+E+V+I+QPPGY   G+E KVY+LKK+LYGLKQAP
Sbjct: 951  IAVAAQYKWKIYQMDVKSAFLNGYLEEEVYIEQPPGYSIQGKEDKVYRLKKSLYGLKQAP 1010

Query: 1339 RAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKK 1160
            RAW +RID YF + GF K P+EHTLYTK    G I+I+CLYVDD+I+TG++  M   FKK
Sbjct: 1011 RAWNTRIDEYFRRNGFIKSPHEHTLYTKKNGYGDIMIVCLYVDDMIFTGNNPGMSDDFKK 1070

Query: 1159 SMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGL 980
            +M  EF+M+D+G M YFLG+EVKQ   GIF+SQKKY ++ILN+F+M++C    TP + G+
Sbjct: 1071 AMTKEFEMTDIGEMSYFLGVEVKQMQDGIFVSQKKYAEQILNKFKMKDCKPVVTPADPGM 1130

Query: 979  KLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILR 800
            KL  DS  E ++ T +K +VGSL YLT TRPDI YAV L+SR+ME P++ HL+AAKRILR
Sbjct: 1131 KLSVDSTRESINPTLFKSLVGSLRYLTITRPDITYAVGLVSRFMEKPKQDHLIAAKRILR 1190

Query: 799  YLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIV 620
            Y++GT ++GLFY   ++S L+G++DSDY GDLDDRKSTSGY F +     SWSSKKQ  +
Sbjct: 1191 YIKGTMNHGLFYTHSQDSKLVGYSDSDYGGDLDDRKSTSGYAFHISSAVFSWSSKKQQTI 1250

Query: 619  TLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
             LST EAE++AA TC CQA+WL+ IL EI    EGP  IY DN S I L+KNPV
Sbjct: 1251 ALSTCEAEYMAAATCTCQAMWLKNILGEIGVSNEGPITIYVDNKSAISLAKNPV 1304



 Score = 65.9 bits (159), Expect = 4e-07
 Identities = 27/56 (48%), Positives = 43/56 (76%)
 Frame = -3

Query: 455  HGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGL 288
            H R KHID K++F+R+  ++  + L++CR+EDQ+ADIFTK LK+ +F K ++ LG+
Sbjct: 1306 HSRSKHIDTKYHFIREQVKNKNVELVHCRTEDQLADIFTKPLKVETFNKFKEKLGM 1361


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 1076 bits (2782), Expect = 0.0
 Identities = 527/985 (53%), Positives = 693/985 (70%), Gaps = 9/985 (0%)
 Frame = -1

Query: 3382 ERTNFAEK--EEEVSLLMVCHVMEETQQN-MWYLDSGCNNHMCGDKKVFSELDESFRNTV 3212
            E+ N+ E+  +EE  LLM  +  +E ++N  WYLDSG +NHMCG K +F+ELDES R  V
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 3211 KFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGV 3032
              GD S + V GKG + ++ K    Q ISNV ++P +KTN+LS+GQL EKGY+I +KD  
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 3031 CRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTL 2852
              I+D++  LI +V M+ NRMF L + N    C     K+ +WLWH R+GHLNFGGL+ L
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 2851 HQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSN 2672
             +K MV GLP I  P++VCE C++ KQ +  FP+  S RA+++LEL+H+D+CGPI P S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSL 543

Query: 2671 RGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNS 2492
                Y + FIDD+SRKTWVYFL+EKSE F  FK +K  VEKE G  IK +R+DRGGE+ S
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 2491 HVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWS 2312
              F  +C  +GI RQLT   +PQQNGV ERKNRTI+ +  S+L    +PK  W EAV  +
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 2311 IHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFL 2132
            +++LNRSPT +V   TP+EAWS R+  V + R+FG I++AH+PDEKR KLDDK EK IF+
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 2131 GVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFD------XXXXX 1970
            G  + SK YKLYNP +KK IISR++VFDEE  W WN++         F+           
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEP 783

Query: 1969 XXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSLFSDCDPTTF 1790
                       P ++Q EE    + R P + +  E+    ++++ L  F LF++C+P  F
Sbjct: 784  PSEEPTTPPTSPTSSQIEE--SSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDF 841

Query: 1789 EEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKAR 1610
            +EA+++  W+ AMDEEI +I++N+TWELT LP GHKTIGVKWVYK K    GEV++YKAR
Sbjct: 842  QEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKAR 901

Query: 1609 LVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVF 1430
            LVAKGY Q  G+DY EVFAPVARL+TVRL+++LAAQN W I Q+DVKSAFL+G+L+E+V+
Sbjct: 902  LVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVY 961

Query: 1429 IDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIE 1250
            I+QP GY+  GEE KV +LKKALYGLKQAPRAW +RID YF ++ F KCPYEH LY KI+
Sbjct: 962  IEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQ 1021

Query: 1249 DGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIF 1070
                ILI CLYVDDLI+TG++ +MF +FKK M  EF+M+D+G M Y+LGIEVKQ D GIF
Sbjct: 1022 K-EDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080

Query: 1069 ISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATR 890
            I+Q+ Y +E+L +F+M + N   TP+E G+KL K  + E VD T +K +VGSL YLT TR
Sbjct: 1081 ITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTR 1140

Query: 889  PDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAG 710
            PDI+YAV ++SRYME P   H  AAKRILRY++GT ++GL Y    +  L+G++DSD+ G
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 709  DLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIH 530
            D+DDRKSTSG+VF +G  A +W SKKQ IV LST EAE+VAAT+C C AIWLR +L+E+ 
Sbjct: 1201 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELS 1260

Query: 529  FKQEGPTPIYCDNSSTIKLSKNPVY 455
              QE PT I+ DN S I L+KNPV+
Sbjct: 1261 LPQEEPTKIFVDNKSAIALAKNPVF 1285


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score = 1074 bits (2778), Expect = 0.0
 Identities = 525/985 (53%), Positives = 692/985 (70%), Gaps = 9/985 (0%)
 Frame = -1

Query: 3382 ERTNFAEK--EEEVSLLMVCHVMEETQQN-MWYLDSGCNNHMCGDKKVFSELDESFRNTV 3212
            E+ N+ E+  +EE  LLM  +  +E ++N  WYLDSG +NHMCG K +F+ELDES R  V
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 3211 KFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGV 3032
              GD S + V GKG + ++ K    Q ISNV ++P +KTN+LS+GQL EKGY+I +KD  
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 3031 CRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTL 2852
              I+D++  LI +V M+ NRMF L + N    C     K+ +WLWH R+GHLNFGGL+ L
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 2851 HQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSN 2672
             +K MV GLP I  P++VCE C++ KQ +  FP+  S RA++ LEL+H+D+CGPI P S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 2671 RGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNS 2492
                Y + FIDD+SRKTWVYFL+EKSE F  FK +K  VEKE G  IK +R+DRGGE+ S
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 2491 HVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWS 2312
              F  +C  +GI RQLT   +PQQNGV ERKNRTI+ +  S+L    +PK  W EAV  +
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 2311 IHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFL 2132
            +++LNRSPT +V   TP+EAWS R+P V + R+FG I++AH+PDEKR KLDDK EK IF+
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 2131 GVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFD------XXXXX 1970
            G  + SK YKLYNP +KK IISR++VFDEE  W WN++         F+           
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEP 783

Query: 1969 XXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSLFSDCDPTTF 1790
                       P ++Q EE    + R P + +  E+    ++++ L  F LF++C+P  F
Sbjct: 784  PSEEPTTPPTSPTSSQIEE--SSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDF 841

Query: 1789 EEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKAR 1610
            ++A+++  W+ AMDEEI +I++N+TWELT LP GHK IGVKWVYK K    GEV++YKAR
Sbjct: 842  QKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 901

Query: 1609 LVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVF 1430
            LVAKGY Q  G+DY EVFAPVARL+TVRL+++LAAQN W I Q+DVKSAFL+G+L+E+V+
Sbjct: 902  LVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVY 961

Query: 1429 IDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIE 1250
            I+QP GY+  GEE KV +LKK LYGLKQAPRAW +RID YF ++ F KCPYEH LY KI+
Sbjct: 962  IEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQ 1021

Query: 1249 DGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIF 1070
                ILI CLYVDDLI+TG++ ++F +FKK M  EF+M+D+G M Y+LGIEVKQ D GIF
Sbjct: 1022 K-EDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080

Query: 1069 ISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATR 890
            I+Q+ Y +E+L +F+M + N   TP+E G+KL K  + E VD T +K +VGSL YLT TR
Sbjct: 1081 ITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTR 1140

Query: 889  PDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAG 710
            PDI+YAV ++SRYME P   H  AAKRILRY++GT ++GL Y    +  L+G++DSD+ G
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 709  DLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIH 530
            D+DDRKSTSG+VF +G  A +W SKKQ IVTLST EAE+VAAT+C C AIWLR +L+E+ 
Sbjct: 1201 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1260

Query: 529  FKQEGPTPIYCDNSSTIKLSKNPVY 455
              QE PT I+ DN S I L+KNPV+
Sbjct: 1261 LPQEEPTKIFVDNKSAIALAKNPVF 1285


>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1071 bits (2769), Expect = 0.0
 Identities = 530/1017 (52%), Positives = 697/1017 (68%), Gaps = 5/1017 (0%)
 Frame = -1

Query: 3490 NSQTEVSRQVEC*VFQMSQVWTLSIRMPNQFDTQNGERTNFAEK--EEEVSLLMVCHVME 3317
            NS+ + SR ++C        +    R PN+   +  E+ N+AE+  +E+ +LL+     +
Sbjct: 270  NSRYDKSR-IKCYNCNKFGHYASECRAPNKNKVE--EKANYAEERCQEDGTLLLAYKGQD 326

Query: 3316 ETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESST 3137
            + + N WYLDSG +NHMCG + +F ELDES +  V FGD S ++V GKG V ++ K    
Sbjct: 327  KGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEH 386

Query: 3136 QVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLY 2957
            Q ISNV +VP +K+N+LS+GQL EKGY+I +K+    I+D     IA+V MT NRMF L 
Sbjct: 387  QFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLN 446

Query: 2956 LHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVS 2777
            + +    C     KD +WLWH R+GHLNF GL+ L +K MV GLP IT P++VCE C++ 
Sbjct: 447  IQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLG 506

Query: 2776 KQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEK 2597
            KQ R  FP+    RA++ LEL+H+D+CGPI P S     Y + FIDD+SRKTWVYFL+EK
Sbjct: 507  KQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEK 566

Query: 2596 SEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQN 2417
            SE F  FK +K  VEKE G  IK LR+DRGGE+ S  F  +C  +GI RQLT   +PQQN
Sbjct: 567  SEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQN 626

Query: 2416 GVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRR 2237
            GV ERKNRTI+ +  S+L    +PK FW EAV  ++++ NRSPT +V   TP+EAWS R+
Sbjct: 627  GVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRK 686

Query: 2236 PSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDV 2057
            P + + R+FG I++ H+PDEKR KLDDK EK IF+G    SK YKLYNP S+K IISR+V
Sbjct: 687  PGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNV 746

Query: 2056 VFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXXXXQLYPAATQN---EERPQRARRRP 1886
            VFDEE  W W+ +          +                P  + N   ++    + R P
Sbjct: 747  VFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSERMP 806

Query: 1885 TWMADYEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWEL 1706
             + +  E+    ++ D +  F LF+DC+P  F+EA+ +  W+ AMDEEI AI++N+TWEL
Sbjct: 807  RFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWEL 866

Query: 1705 TKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVR 1526
              LPK H  IGVKWVYK K    GEV +YKARLVAKGY Q  G+DY EVFAPVARL+TVR
Sbjct: 867  VSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVR 926

Query: 1525 LLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQ 1346
            L+++LAAQN+W I Q+DVKSAFL+G L+E+V+I+QP GY   GEE KV +LKKALYGLKQ
Sbjct: 927  LIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQ 986

Query: 1345 APRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKF 1166
            APRAW  RID YF +  F KCPYEH LY K + G  ILI+CLYVDDLI+TG++ +MF +F
Sbjct: 987  APRAWNVRIDKYFKEANFIKCPYEHALYIKAQ-GKDILIVCLYVDDLIFTGNNPSMFEEF 1045

Query: 1165 KKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEV 986
            KK M  EF+M+D+G M Y+LGIEVKQ + GIFI+Q+ Y +++L +F++ + N   TP+E 
Sbjct: 1046 KKDMTKEFEMTDMGLMAYYLGIEVKQGNEGIFITQESYAKDLLKKFKLDDANPVGTPMEC 1105

Query: 985  GLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRI 806
            G+KL KD + EKVD T YK +VGSL YLT TRPDI+YAV ++SRYME P   HL  AKRI
Sbjct: 1106 GIKLSKDEEGEKVDPTLYKSLVGSLRYLTCTRPDILYAVGVVSRYMEAPTTTHLKTAKRI 1165

Query: 805  LRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQS 626
            LRY++GT+ +GL+Y    +  L+G++DSD++GD+DDRKSTSG+VF +G  A +W SKKQ 
Sbjct: 1166 LRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQP 1225

Query: 625  IVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPVY 455
            IVTLST EAE+VAAT+C C AIWLR +L+E+   Q  PT IY DN S I L+KNPV+
Sbjct: 1226 IVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVF 1282


>ref|XP_013688817.1| PREDICTED: uncharacterized protein LOC106392554, partial [Brassica
            napus]
          Length = 2682

 Score = 1071 bits (2769), Expect = 0.0
 Identities = 518/978 (52%), Positives = 684/978 (69%), Gaps = 2/978 (0%)
 Frame = -1

Query: 3382 ERTNFAEK--EEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVK 3209
            E++N+ E+  +EE  LLM     E  + + WYLDSG +NHMCG+K +F ELDES +  V 
Sbjct: 313  EKSNYVEERSKEEDMLLMAYKKDEPNEVHKWYLDSGASNHMCGNKSMFVELDESVKTDVA 372

Query: 3208 FGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVC 3029
             GD S + V GKG + ++ K    Q ISNV ++P +KTN+LS+GQL EKGY+I +KD   
Sbjct: 373  LGDESRMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNSL 432

Query: 3028 RIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLH 2849
             ++D    LI +V M++NRMF L + N    C     K+ +WLWH R+GHLNFGGL+ L 
Sbjct: 433  SLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLRFGHLNFGGLELLS 492

Query: 2848 QKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNR 2669
            +K MV GLP I  P++VCE C++ KQ +  FP+    RA++ LEL+H+D+CGPI P+S  
Sbjct: 493  KKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKESETRARKPLELIHTDVCGPIKPSSLG 552

Query: 2668 GKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSH 2489
               Y + FIDD+SRKTWVYFL++KSE F  FK +K  VEKE G  IK +R+DRGGE+ S 
Sbjct: 553  KSNYFLLFIDDFSRKTWVYFLKQKSEVFENFKKFKAHVEKESGLKIKSMRSDRGGEFMSK 612

Query: 2488 VFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSI 2309
             F  +C  +GI RQLT   TPQQNGV ERKNRTI+ +  S+L    +PK  W EAV  ++
Sbjct: 613  EFLKYCEDNGIRRQLTVPRTPQQNGVAERKNRTILEMARSMLKSKKLPKELWAEAVACAV 672

Query: 2308 HILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLG 2129
            +I NRSPT +V   TP+EAWS R+P V + R+FG I++AH+PDEKR KLDDK EK IF+G
Sbjct: 673  YISNRSPTKSVLEKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIG 732

Query: 2128 VSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXXX 1949
                SK YKLYNP +KK IISR+V+FDEE  W W ++         F+            
Sbjct: 733  YDANSKGYKLYNPETKKTIISRNVIFDEEGEWDWRSNNEDYNFFPSFEEENVEQPREEPA 792

Query: 1948 XQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKEP 1769
                   T ++     + R P + +  ++    +++D L  F LF+DC+P  FEEA ++ 
Sbjct: 793  TPPTSPTTSSQGDESSSERTPRFRSLQDIYEVTENQDNLTLFCLFADCEPMNFEEAQEKK 852

Query: 1768 RWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYK 1589
             W+ AMDEEI +I++N+TWEL  LP GHK IGVKWVYK K    GEV++YKARLVAKGY 
Sbjct: 853  SWRSAMDEEIKSIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYS 912

Query: 1588 QEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGY 1409
            Q  G+DY EVFAPVARL+TVRL+++LAAQ SW I Q+DVKSAFL+G+L+E+V+I+QP GY
Sbjct: 913  QRAGIDYDEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGY 972

Query: 1408 VRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILI 1229
            +  GEE KV +LKKALYGLKQAPRAW +RID YF ++GF KCPYEH LY K ++   ILI
Sbjct: 973  IVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKGFIKCPYEHALYIKTQN-NDILI 1031

Query: 1228 ICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYV 1049
             CLYVDDLI+TG++  MF  FK  M  EF+M+D+G M Y+LGIEVKQ + GIFI+Q+ Y 
Sbjct: 1032 ACLYVDDLIFTGNNPIMFEDFKMEMTKEFEMTDIGLMSYYLGIEVKQEENGIFITQEGYA 1091

Query: 1048 QEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAV 869
            +E+L +F+M + N   TP+E G+KL K+ + E VD T +K +VGSL YLT TRPDI++AV
Sbjct: 1092 KEVLKKFKMDDSNPVCTPMECGVKLSKEEEGESVDPTLFKSLVGSLRYLTCTRPDILHAV 1151

Query: 868  SLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKS 689
             ++SRYME P   H  AAKRILRY++GT ++GL+Y   ++  L+G++DSD+ GD+DDRKS
Sbjct: 1152 GVVSRYMEHPTTTHFKAAKRILRYIKGTINFGLYYSISDDYKLVGYSDSDWGGDVDDRKS 1211

Query: 688  TSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPT 509
            TSG+VF +G  A +W SKKQ IVTLST EAE+VAAT+C C AIWLR +L+E++  QE PT
Sbjct: 1212 TSGFVFFIGETAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELNLPQEEPT 1271

Query: 508  PIYCDNSSTIKLSKNPVY 455
             I+ DN S I L+KNPV+
Sbjct: 1272 KIFVDNRSAIALAKNPVF 1289



 Score = 1070 bits (2768), Expect = 0.0
 Identities = 517/978 (52%), Positives = 684/978 (69%), Gaps = 2/978 (0%)
 Frame = -1

Query: 3382 ERTNFAE--KEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVK 3209
            E++N+ E  ++EE  LLM     E  + + WYLDSG +NHMCG+K +F ELDES +  V 
Sbjct: 1652 EKSNYVEERRKEEDMLLMAYKKDEPNEVHKWYLDSGASNHMCGNKSMFVELDESVKTDVA 1711

Query: 3208 FGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVC 3029
             GD S + V GKG + ++ K    Q ISNV ++P +KTN+LS+GQL EKGY+I +KD   
Sbjct: 1712 LGDESRMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNSL 1771

Query: 3028 RIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLH 2849
             ++D    LI +V M++NRMF L + N    C     K+ +WLWH R+GHLNFGGL+ L 
Sbjct: 1772 SLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLRFGHLNFGGLELLS 1831

Query: 2848 QKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNR 2669
            +K MV GLP I  P++VCE C++ KQ +  FP+    RA++ LEL+H+D+CGPI P+S  
Sbjct: 1832 KKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKESETRARKPLELIHTDVCGPIKPSSLG 1891

Query: 2668 GKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSH 2489
               Y + FIDD+SRKTWVYFL++KSE F  FK +K  VEKE G  IK +R+DRGGE+ S 
Sbjct: 1892 KSNYFLLFIDDFSRKTWVYFLKQKSEVFENFKKFKAHVEKESGLKIKSMRSDRGGEFMSK 1951

Query: 2488 VFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSI 2309
             F  +C  +GI RQLT   TPQQNGV ERKNRTI+ +  S+L    +PK  W EAV  ++
Sbjct: 1952 EFLKYCEDNGIRRQLTVPRTPQQNGVAERKNRTILEMARSMLKSKKLPKELWAEAVACAV 2011

Query: 2308 HILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLG 2129
            +I NRSPT +V   TP+EAWS R+P V + R+FG I++AH+PDEKR KLDDK EK IF+G
Sbjct: 2012 YISNRSPTKSVLEKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIG 2071

Query: 2128 VSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXXX 1949
                SK YKLYNP +KK IISR+V+FDEE  W W ++         F+            
Sbjct: 2072 YDANSKGYKLYNPETKKTIISRNVIFDEEGEWDWRSNNEDYNFFPSFEEENVEQPREEPA 2131

Query: 1948 XQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKEP 1769
                   T ++     + R P + +  ++    +++D L  F LF+DC+P  FEEA ++ 
Sbjct: 2132 TPPTSPTTSSQGDESSSERTPRFRSLQDIYEVTENQDNLTLFCLFADCEPMNFEEAQEKK 2191

Query: 1768 RWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYK 1589
             W+ AMDEEI +I++N+TWEL  LP GHK IGVKWVYK K    GEV++YKARLVAKGY 
Sbjct: 2192 SWRSAMDEEIKSIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYS 2251

Query: 1588 QEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGY 1409
            Q  G+DY EVFAPVARL+TVRL+++LAAQ SW I Q+DVKSAFL+G+L+E+V+I+QP GY
Sbjct: 2252 QRAGIDYDEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGY 2311

Query: 1408 VRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILI 1229
            +  GEE KV +LKKALYGLKQAPRAW +RID YF ++GF KCPYEH LY K ++   ILI
Sbjct: 2312 IVEGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKGFIKCPYEHALYIKTQN-NDILI 2370

Query: 1228 ICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYV 1049
             CLYVDDLI+TG++  MF  FK  M  EF+M+D+G M Y+LGIEVKQ + GIFI+Q+ Y 
Sbjct: 2371 ACLYVDDLIFTGNNPIMFEDFKMEMTKEFEMTDIGLMSYYLGIEVKQEENGIFITQEGYA 2430

Query: 1048 QEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAV 869
            +E+L +F+M + N   TP+E G+KL K+ + E VD T +K +VGSL YLT TRPDI++AV
Sbjct: 2431 KEVLKKFKMDDSNPVCTPMECGVKLSKEEEGESVDPTLFKSLVGSLRYLTCTRPDILHAV 2490

Query: 868  SLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKS 689
             ++SRYME P   H  AAKRILRY++GT ++GL+Y   ++  L+G++DSD+ GD+DDRKS
Sbjct: 2491 GVVSRYMEHPTTTHFKAAKRILRYIKGTINFGLYYSISDDYKLVGYSDSDWGGDVDDRKS 2550

Query: 688  TSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPT 509
            TSG+VF +G  A +W SKKQ IVTLST EAE+VAAT+C C AIWLR +L++++  QE PT
Sbjct: 2551 TSGFVFFIGETAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKDLNLPQEEPT 2610

Query: 508  PIYCDNSSTIKLSKNPVY 455
             I+ DN S I L+KNPV+
Sbjct: 2611 KIFVDNKSAIALAKNPVF 2628


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score = 1071 bits (2769), Expect = 0.0
 Identities = 523/985 (53%), Positives = 692/985 (70%), Gaps = 9/985 (0%)
 Frame = -1

Query: 3382 ERTNFAEK--EEEVSLLMVCHVMEETQQN-MWYLDSGCNNHMCGDKKVFSELDESFRNTV 3212
            E+ ++ E+  +EE  LLM  +  +E ++N  WYLDSG +NHMCG K +F+ELDES R  V
Sbjct: 304  EKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 3211 KFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGV 3032
              GD S + V GKG + ++ K    Q ISNV ++P +KTN+LS+GQL EKGY+I +KD  
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 3031 CRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTL 2852
              I+D++  LI +V M+ NRMF L + N    C     K+ +WLWH R+GHLNFGGL+ L
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 2851 HQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSN 2672
             +K MV GLP I  P++VCE C++ KQ +  FP+  S RA++ LEL+H+D+CGPI P S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 2671 RGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNS 2492
                Y + FIDD+SRKTWVYFL+EKSE F  FK +K  VEKE G  IK +R+DRGGE+ S
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 2491 HVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWS 2312
              F  +C  +GI RQLT   +PQQNGV ERKNRTI+ +  S+L    +PK  W EAV  +
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 2311 IHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFL 2132
            +++LNRSPT +V   TP+EAWS R+P V + R+FG I++AH+PDEKR KLDDK EK IF+
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 2131 GVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFD------XXXXX 1970
            G  + SK YKLYNP +KK IISR++VFDEE  W WN++         F+           
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEP 783

Query: 1969 XXXXXXXXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPLIHFSLFSDCDPTTF 1790
                       P ++Q EE    + R P + +  E+    ++++ L  F LF++C+P  F
Sbjct: 784  PSEEPTTPPTSPTSSQIEE--SSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDF 841

Query: 1789 EEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKAR 1610
            ++A+++  W+ AMDEEI +I++N+TWELT LP GHK IGVKWVYK K    GEV++YKAR
Sbjct: 842  QKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 901

Query: 1609 LVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVF 1430
            LVAKGY Q  G+DY EVFAPVARL+TVRL+++LAAQN W I Q+DVKSAFL+G+L+E+V+
Sbjct: 902  LVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVY 961

Query: 1429 IDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIE 1250
            I+QP GY+  GEE KV +LKK LYGLKQAPRAW +RID YF ++ F KCPYEH LY KI+
Sbjct: 962  IEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQ 1021

Query: 1249 DGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIF 1070
                ILI CLYVDDLI+TG++ ++F +FKK M  EF+M+D+G M Y+LGIEVKQ D GIF
Sbjct: 1022 K-EDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080

Query: 1069 ISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATR 890
            I+Q+ Y +E+L +F++ + N   TP+E G+KL K  + E VD T +K +VGSL YLT TR
Sbjct: 1081 ITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTR 1140

Query: 889  PDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAG 710
            PDI+YAV ++SRYME P   H  AAKRILRY++GT ++GL Y    +  L+G++DSD+ G
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 709  DLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIH 530
            D+DDRKSTSG+VF +G  A +W SKKQ IVTLST EAE+VAAT+C C AIWLR +L+E+ 
Sbjct: 1201 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1260

Query: 529  FKQEGPTPIYCDNSSTIKLSKNPVY 455
              QE PT I+ DN S I L+KNPV+
Sbjct: 1261 LPQEEPTKIFVDNKSAIALAKNPVF 1285


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score = 1070 bits (2768), Expect = 0.0
 Identities = 530/1017 (52%), Positives = 697/1017 (68%), Gaps = 5/1017 (0%)
 Frame = -1

Query: 3490 NSQTEVSRQVEC*VFQMSQVWTLSIRMPNQFDTQNGERTNFAEK--EEEVSLLMVCHVME 3317
            NS+ + SR ++C        +    R PN+   +  E+ N+AE+  +E+ +LL+     +
Sbjct: 270  NSRYDKSR-IKCYNCNKFGHYASECRAPNKNKVE--EKANYAEERCQEDGTLLLAYKGQD 326

Query: 3316 ETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESST 3137
            + + N WYLDSG +NHMCG + +F ELDES +  V FGD S ++V GKG V ++ K    
Sbjct: 327  KGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEH 386

Query: 3136 QVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLY 2957
            Q ISNV +VP +K+N+LS+GQL EKGY+I +K+    I+D     IA+V MT NRMF L 
Sbjct: 387  QFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLN 446

Query: 2956 LHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVS 2777
            + +    C     KD +WLWH R+GHLNF GL+ L +K MV GLP IT P++VCE C++ 
Sbjct: 447  IQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLG 506

Query: 2776 KQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEK 2597
            KQ R  FP+    RA++ LEL+H+D+CGPI P S     Y + FIDD+SRKTWVYFL+EK
Sbjct: 507  KQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEK 566

Query: 2596 SEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQN 2417
            SE F  FK +K  VEKE G  IK LR+DRGGE+ S  F  +C  +GI RQLT   +PQQN
Sbjct: 567  SEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQN 626

Query: 2416 GVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRR 2237
            GV ERKNRTI+ +  S+L    +PK FW EAV  ++++ NRSPT +V   TP+EAWS R+
Sbjct: 627  GVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRK 686

Query: 2236 PSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDV 2057
            P + + R+FG I++ H+PDEKR KLDDK EK IF+G    SK YKLYNP S+K IISR+V
Sbjct: 687  PGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNV 746

Query: 2056 VFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXXXXQLYPAATQN---EERPQRARRRP 1886
            VFDEE  W W+ +          +                P  + N   ++    + R P
Sbjct: 747  VFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSERMP 806

Query: 1885 TWMADYEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWEL 1706
             + +  E+    ++ D +  F LF+DC+P  F+EA+ +  W+ AMDEEI AI++N+TWEL
Sbjct: 807  RFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWEL 866

Query: 1705 TKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVR 1526
              LPK H  IGVKWVYK K    GEV +YKARLVAKGY Q  G+DY EVFAPVARL+TVR
Sbjct: 867  VSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVR 926

Query: 1525 LLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQ 1346
            L+++LAAQN+W I Q+DVKSAFL+G L+E+V+I+QP GY   GEE KV +LKKALYGLKQ
Sbjct: 927  LIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQ 986

Query: 1345 APRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKF 1166
            APRAW  RID YF +  F KCPYEH LY K + G  ILI+CLYVDDLI+TG++ +MF +F
Sbjct: 987  APRAWNVRIDKYFKEVNFIKCPYEHALYIKAQ-GKDILIVCLYVDDLIFTGNNPSMFEEF 1045

Query: 1165 KKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEV 986
            KK M  EF+M+D+G M Y+LGIEVKQ + GIFI+Q+ Y +++L +F++ + N   TP+E 
Sbjct: 1046 KKDMTKEFEMTDMGLMAYYLGIEVKQGNEGIFITQESYAKDLLKKFKLDDANPVGTPMEC 1105

Query: 985  GLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRI 806
            G+KL KD + EKVD T YK +VGSL YLT TRPDI+YAV ++SRYME P   HL  AKRI
Sbjct: 1106 GIKLSKDEEGEKVDPTLYKSLVGSLRYLTCTRPDILYAVGVVSRYMEAPTTTHLKTAKRI 1165

Query: 805  LRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQS 626
            LRY++GT+ +GL+Y    +  L+G++DSD++GD+DDRKSTSG+VF +G  A +W SKKQ 
Sbjct: 1166 LRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQP 1225

Query: 625  IVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPVY 455
            IVTLST EAE+VAAT+C C AIWLR +L+E+   Q  PT IY DN S I L+KNPV+
Sbjct: 1226 IVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVF 1282


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score = 1069 bits (2765), Expect = 0.0
 Identities = 529/1017 (52%), Positives = 695/1017 (68%), Gaps = 5/1017 (0%)
 Frame = -1

Query: 3490 NSQTEVSRQVEC*VFQMSQVWTLSIRMPNQFDTQNGERTNFAEK--EEEVSLLMVCHVME 3317
            NS+ + SR ++C        +    R PN+   +  E+ N+AE+  +E+ +LL+     +
Sbjct: 259  NSRYDKSR-IKCYNCNKFGHYASECRAPNKNKVE--EKANYAEERCQEDGTLLLAYKGQD 315

Query: 3316 ETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFGDNSTISVMGKGRVTLQTKESST 3137
            + + N WYLDSG +NHMCG + +F ELDES +  V FGD S ++V GKG V +Q K    
Sbjct: 316  KGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIQLKNGEH 375

Query: 3136 QVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRIQDEKLGLIAQVKMTANRMFPLY 2957
            Q ISN+ +VP +K+N+LS+GQL EKGY+I +K+    I+D     I +V M  NRMF L 
Sbjct: 376  QFISNIYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFITKVPMMRNRMFVLN 435

Query: 2956 LHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTLHQKNMVTGLPQITAPSEVCEECVVS 2777
            + +    C     KD +WLWH R+GHLNF GL  L +K MV GLP IT P++VCE C++ 
Sbjct: 436  IQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLDLLSKKAMVRGLPCITHPNQVCEGCLLG 495

Query: 2776 KQHRNQFPQGKSWRAKRALELVHSDICGPINPTSNRGKRYIITFIDDYSRKTWVYFLQEK 2597
            KQ R  FP+    RA++ LEL+H+D+CGPI P S     Y + FIDD+SRKTWVYFL+EK
Sbjct: 496  KQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEK 555

Query: 2596 SEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNSHVFANFCNAHGIERQLTTAYTPQQN 2417
            SE F  FK +K  VEKE G  IK LR+DRGGE+ S  F  +C  +GI RQLT   +PQQN
Sbjct: 556  SEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQN 615

Query: 2416 GVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWSIHILNRSPTLAVQNMTPEEAWSRRR 2237
            GV ERKNRTI+ +  S+L    +PK FW EAV  ++++ NRSPT +V   TP+EAWS R+
Sbjct: 616  GVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRK 675

Query: 2236 PSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFLGVSDQSKAYKLYNPISKKIIISRDV 2057
            P + + R+FG I++ H+PDEKR KLDDK EK IF+G    SK YKLYNP S+K IISR+V
Sbjct: 676  PGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNV 735

Query: 2056 VFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXXXXQLYPAATQN---EERPQRARRRP 1886
            VFDEE  W W+ +          +                P  + N   ++    + R P
Sbjct: 736  VFDEEGEWDWSTNCEDHTFFPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSERMP 795

Query: 1885 TWMADYEVTGYNQSEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWEL 1706
             + +  E+    ++ D +  F LF+DC+P  F+EA+ +  W+ AMDEEI AI++N+TWEL
Sbjct: 796  RFRSLQEIYEATENLDNVTLFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWEL 855

Query: 1705 TKLPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVR 1526
              LPK H  IGVKWVYK K    GEV +YKARLVAKGY Q  G+DY EVFAPVARL+TVR
Sbjct: 856  VSLPKEHTAIGVKWVYKAKKDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVR 915

Query: 1525 LLVALAAQNSWPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQ 1346
            L+++LAAQN+W I Q+DVKSAFL+G L+E+V+I+QP GY   GEE KV +LKKALYGLKQ
Sbjct: 916  LIISLAAQNNWKIHQMDVKSAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQ 975

Query: 1345 APRAWYSRIDAYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKF 1166
            APRAW  RID YF +  F KCPYEH LY K + G  ILI+CLYVDDLI+TG++ +MF +F
Sbjct: 976  APRAWNVRIDKYFKEANFIKCPYEHALYIKAQ-GKDILIVCLYVDDLIFTGNNPSMFEEF 1034

Query: 1165 KKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEV 986
            KK M  EF+M+D+G M Y+LGIEVKQ + GIFI+Q+ Y +++L +F++ + N   TP+E 
Sbjct: 1035 KKDMTKEFEMTDMGLMAYYLGIEVKQGNEGIFITQESYAKDLLKKFKLDDANPVGTPMEC 1094

Query: 985  GLKLIKDSDEEKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRI 806
            G+KL KD + EKVD T YK +VGSL YLT TRPDI+YAV ++SRYME P   HL  AKRI
Sbjct: 1095 GIKLSKDEEGEKVDPTLYKSLVGSLRYLTCTRPDILYAVGVVSRYMEAPTTTHLKTAKRI 1154

Query: 805  LRYLQGTSDYGLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQS 626
            LRY++GT+ +GL+Y    +  L+G++DSD++GD+DDRKSTSG+VF +G  A +W SKKQ 
Sbjct: 1155 LRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQP 1214

Query: 625  IVTLSTTEAEFVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPVY 455
            IVTLST EAE+VAAT+C C AIWLR +L+E+   Q  PT IY DN STI L+KNPV+
Sbjct: 1215 IVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSTIALAKNPVF 1271


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score = 1064 bits (2751), Expect = 0.0
 Identities = 524/985 (53%), Positives = 682/985 (69%), Gaps = 9/985 (0%)
 Frame = -1

Query: 3382 ERTNFAEK--EEEVSLLMVCHVMEETQQN-MWYLDSGCNNHMCGDKKVFSELDESFRNTV 3212
            E+ N+ E+  +EE  LLM  +  +E ++N  WYLDSG +NHMCG K +F+ELDES R  V
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 3211 KFGDNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGV 3032
              GD S + V GKG + ++ K    Q ISNV ++P +KTN+LS+GQL EKGY+I +KD  
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 3031 CRIQDEKLGLIAQVKMTANRMFPLYLHNTSHSCFSAKLKDAAWLWHFRYGHLNFGGLKTL 2852
              I+D++  LI +V M+ NRMF L + N    C     K+ +WLWH R+GHLNFGGL+ L
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 2851 HQKNMVTGLPQITAPSEVCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPINPTSN 2672
             +K MV GLP I  P++VCE C++ KQ +  FP+  S RA++ LEL+H+D+CGPI P S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 2671 RGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRGGEYNS 2492
                Y + FIDD+SRKTWVYFL+EKSE F  FK +K  VEKE G  IK +R+DRGGE+ S
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 2491 HVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPEAVNWS 2312
              F  +C  +GI RQLT   +PQQNGV ERKNRTI+ +  S+L    +PK  W EAV  +
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 2311 IHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGEKCIFL 2132
            +++LNRSPT +V   TP+EAWS R+P V + R+FG I++AH+PDEKR KLDDK EK IF+
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 2131 GVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIPADFDXXXXXXXXXXX 1952
            G  + SK YKLYNP +KK IISR++VFDEE  W WN++         F+           
Sbjct: 724  GYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFE----------- 772

Query: 1951 XXQLYPAATQNEERPQRARRRPTWMADYEVTGYNQSEDPL------IHFSLFSDCDPTTF 1790
                       E++P+  R  P             SE+P           +   C+P  F
Sbjct: 773  -----------EDKPEPTREEP------------PSEEPTTPPTSPTSSQIEEKCEPMDF 809

Query: 1789 EEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTIGVKWVYKTKLKENGEVDKYKAR 1610
            +EA+++  W+ AMDEEI +I++N+TWELT LP GHK IGVKWVYK K    GEV++YKAR
Sbjct: 810  QEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 869

Query: 1609 LVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNSWPIFQLDVKSAFLHGNLDEQVF 1430
            LVAKGY Q  G+DY EVFAPVARL+TVRL+++LAAQN W I Q+DVKSAFL+G+L+E+V+
Sbjct: 870  LVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVY 929

Query: 1429 IDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRIDAYFSKEGFRKCPYEHTLYTKIE 1250
            I+QP GY+  GEE KV +LKKALYGLKQAPRAW +RID YF ++ F KCPYEH LY KI+
Sbjct: 930  IEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQ 989

Query: 1249 DGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDMSDLGGMHYFLGIEVKQSDVGIF 1070
                ILI CLYVDDLI+TG++ +MF +FKK M  EF+M+D+G M Y+LGIEVKQ D GIF
Sbjct: 990  K-EDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1048

Query: 1069 ISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDEEKVDSTFYKQIVGSLMYLTATR 890
            I+Q+ Y +E+L +F+M + N   TP+E G+KL K  + E VD T +K +VGSL YLT TR
Sbjct: 1049 ITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTR 1108

Query: 889  PDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDYGLFYKKGENSSLMGFTDSDYAG 710
            PDI+YAV ++SRYME P   H  AAKRILRY++GT ++GL Y    +  L+G++DSD+ G
Sbjct: 1109 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1168

Query: 709  DLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAEFVAATTCACQAIWLRKILEEIH 530
            D+DDRKSTSG+VF +G  A +W SKKQ IVTLST EAE+VAAT+C C AIWLR +L+E+ 
Sbjct: 1169 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1228

Query: 529  FKQEGPTPIYCDNSSTIKLSKNPVY 455
              QE PT I+ DN S I L+KNPV+
Sbjct: 1229 LPQEEPTKIFVDNKSAIALAKNPVF 1253


>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
          Length = 1334

 Score = 1035 bits (2676), Expect = 0.0
 Identities = 521/1006 (51%), Positives = 687/1006 (68%), Gaps = 31/1006 (3%)
 Frame = -1

Query: 3382 ERTNFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFG 3203
            +  N+ E EE++ L+     + + ++ +W+LDSGC+NHMCG ++ F ELD  F+  V+ G
Sbjct: 269  KEANYVEMEEDLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLG 328

Query: 3202 DNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRI 3023
            D+  ++V GKG++ L+  +   QVIS+V FVPGLK NL S+GQLQ+KG    I+  VC +
Sbjct: 329  DDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEV 387

Query: 3022 QDE-KLGLIAQVKMTANRMFPLYL-----HNTSHSCFSAKLKDAAWLWHFRYGHLNFGGL 2861
              + +  ++    MT NRMF ++        T  +     +  A  +WH R+GHLN  GL
Sbjct: 388  WHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGL 447

Query: 2860 KTLHQKNMVTGLPQITAPSE--VCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPI 2687
            ++L +K MV GLP+     E  VC+ C+  KQ R   P+  +W++ + L+LVH+DICGPI
Sbjct: 448  RSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPI 507

Query: 2686 NPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRG 2507
            NP S  GKRYI+ FIDD+SRK W Y L EKSE F  FK +K  VE+E G  +  LR+DRG
Sbjct: 508  NPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRG 567

Query: 2506 GEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPE 2327
            GEYNS  F  +C   GI+RQLT AYTPQQNGV ERKNR++MN+   +L    VP+ FWPE
Sbjct: 568  GEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPE 627

Query: 2326 AVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGE 2147
            AV ++++ILNRSP+ A+ ++TPEE WS  +PSV++ RIFG ++YA +P +KR KLD+K  
Sbjct: 628  AVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSI 687

Query: 2146 KCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIP---ADFDXXX 1976
            KC+  GVS +SKAY+LY+P + KI+ISRDV FDEE+ W W +  +++++    +D +   
Sbjct: 688  KCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAG 747

Query: 1975 XXXXXXXXXXQLYPAATQNEERPQ----------------RARRRPTWMADYEVTG---- 1856
                      Q     T+ EE                   R R++P WM DY V      
Sbjct: 748  EEGPEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVL 807

Query: 1855 YNQSEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTI 1676
              Q E+  +        DP  FEEA +   W+KAM+ EI +IE NNTWEL +LP+  K I
Sbjct: 808  ITQDEEDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVI 867

Query: 1675 GVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNS 1496
            G+KW++KTK  E GEVDK+KARLVAKGY Q +GVD+ EVFAPVA+ DT+RL++ LAA+  
Sbjct: 868  GLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKG 927

Query: 1495 WPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRID 1316
            W +FQLDVKSAFLHG+L E VF++QP G+    E  KVYKLKKALYGLKQAPRAWYSRI+
Sbjct: 928  WSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIE 987

Query: 1315 AYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDM 1136
             +F KEGF KC  EHTL+ K ++    L++ +YVDDLIYTGS   M   FK SMM+EF M
Sbjct: 988  EFFGKEGFEKCYCEHTLFVK-KERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAM 1046

Query: 1135 SDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDE 956
            +DLG M YFLG+EV Q + GIFI+Q+KY  EI+ ++ M+ CNS   PI  G KL K    
Sbjct: 1047 TDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGAG 1106

Query: 955  EKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDY 776
            + VD T +KQ++GSL YLT TRPD++++V+L+SRYME P E HLLA KRILRY+QGT D 
Sbjct: 1107 DAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDL 1166

Query: 775  GLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAE 596
            G+ Y++G  + L+GF DSDYAGD+DDRKSTSGYVFMLG GAI+W+SKKQ IVTLSTTEAE
Sbjct: 1167 GIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAE 1226

Query: 595  FVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            FV+A+  ACQA+WLR +LEEI  +QEG T ++CDNSSTIKLSKNPV
Sbjct: 1227 FVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPV 1272



 Score = 65.5 bits (158), Expect = 5e-07
 Identities = 30/62 (48%), Positives = 44/62 (70%)
 Frame = -3

Query: 458  LHGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGLCTL 279
            LHGR KHI V+++FLR+L ++G I L YC + DQ+ADI TK++K   F +LR  +G+   
Sbjct: 1273 LHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRRR 1332

Query: 278  ED 273
            E+
Sbjct: 1333 EE 1334


>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
            gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1334

 Score = 1035 bits (2676), Expect = 0.0
 Identities = 521/1006 (51%), Positives = 687/1006 (68%), Gaps = 31/1006 (3%)
 Frame = -1

Query: 3382 ERTNFAEKEEEVSLLMVCHVMEETQQNMWYLDSGCNNHMCGDKKVFSELDESFRNTVKFG 3203
            +  N+ E EE++ L+     + + ++ +W+LDSGC+NHMCG ++ F ELD  F+  V+ G
Sbjct: 269  KEANYVEMEEDLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLG 328

Query: 3202 DNSTISVMGKGRVTLQTKESSTQVISNVLFVPGLKTNLLSMGQLQEKGYEISIKDGVCRI 3023
            D+  ++V GKG++ L+  +   QVIS+V FVPGLK NL S+GQLQ+KG    I+  VC +
Sbjct: 329  DDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEV 387

Query: 3022 QDE-KLGLIAQVKMTANRMFPLYL-----HNTSHSCFSAKLKDAAWLWHFRYGHLNFGGL 2861
              + +  ++    MT NRMF ++        T  +     +  A  +WH R+GHLN  GL
Sbjct: 388  WHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGL 447

Query: 2860 KTLHQKNMVTGLPQITAPSE--VCEECVVSKQHRNQFPQGKSWRAKRALELVHSDICGPI 2687
            ++L +K MV GLP+     E  VC+ C+  KQ R   P+  +W++ + L+LVH+DICGPI
Sbjct: 448  RSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPI 507

Query: 2686 NPTSNRGKRYIITFIDDYSRKTWVYFLQEKSEAFVAFKNYKVFVEKEVGCPIKVLRTDRG 2507
            NP S  GKRYI+ FIDD+SRK W Y L EKSE F  FK +K  VE+E G  +  LR+DRG
Sbjct: 508  NPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRG 567

Query: 2506 GEYNSHVFANFCNAHGIERQLTTAYTPQQNGVCERKNRTIMNIV*SLLTRSGVPKSFWPE 2327
            GEYNS  F  +C   GI+RQLT AYTPQQNGV ERKNR++MN+   +L    VP+ FWPE
Sbjct: 568  GEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPE 627

Query: 2326 AVNWSIHILNRSPTLAVQNMTPEEAWSRRRPSVDYFRIFGCISYAHIPDEKRRKLDDKGE 2147
            AV ++++ILNRSP+ A+ ++TPEE WS  +PSV++ RIFG ++YA +P +KR KLD+K  
Sbjct: 628  AVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSI 687

Query: 2146 KCIFLGVSDQSKAYKLYNPISKKIIISRDVVFDEEKYWSWNNDGVQQQIP---ADFDXXX 1976
            KC+  GVS +SKAY+LY+P + KI+ISRDV FDEE+ W W +  +++++    +D +   
Sbjct: 688  KCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAG 747

Query: 1975 XXXXXXXXXXQLYPAATQNEERPQ----------------RARRRPTWMADYEVTG---- 1856
                      Q     T+ EE                   R R++P WM DY V      
Sbjct: 748  EEGPEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVL 807

Query: 1855 YNQSEDPLIHFSLFSDCDPTTFEEAVKEPRWQKAMDEEIAAIERNNTWELTKLPKGHKTI 1676
              Q E+  +        DP  FEEA +   W+KAM+ EI +IE NNTWEL +LP+  K I
Sbjct: 808  ITQDEEDEVLALFIGPGDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVI 867

Query: 1675 GVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYREVFAPVARLDTVRLLVALAAQNS 1496
            G+KW++KTK  E GEVDK+KARLVAKGY Q +GVD+ EVFAPVA+ DT+RL++ LAA+  
Sbjct: 868  GLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKG 927

Query: 1495 WPIFQLDVKSAFLHGNLDEQVFIDQPPGYVRIGEEHKVYKLKKALYGLKQAPRAWYSRID 1316
            W +FQLDVKSAFLHG+L E VF++QP G+    E  KVYKLKKALYGLKQAPRAWYSRI+
Sbjct: 928  WSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIE 987

Query: 1315 AYFSKEGFRKCPYEHTLYTKIEDGGKILIICLYVDDLIYTGSDSAMFVKFKKSMMDEFDM 1136
             +F KEGF KC  EHTL+ K ++    L++ +YVDDLIYTGS   M   FK SMM+EF M
Sbjct: 988  EFFGKEGFEKCYCEHTLFVK-KERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAM 1046

Query: 1135 SDLGGMHYFLGIEVKQSDVGIFISQKKYVQEILNRFQMQNCNSASTPIEVGLKLIKDSDE 956
            +DLG M YFLG+EV Q + GIFI+Q+KY  EI+ ++ M+ CNS   PI  G KL K    
Sbjct: 1047 TDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGAG 1106

Query: 955  EKVDSTFYKQIVGSLMYLTATRPDIMYAVSLISRYMECPREMHLLAAKRILRYLQGTSDY 776
            + VD T +KQ++GSL YLT TRPD++++V+L+SRYME P E HLLA KRILRY+QGT D 
Sbjct: 1107 DAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDL 1166

Query: 775  GLFYKKGENSSLMGFTDSDYAGDLDDRKSTSGYVFMLGLGAISWSSKKQSIVTLSTTEAE 596
            G+ Y++G  + L+GF DSDYAGD+DDRKSTSGYVFMLG GAI+W+SKKQ IVTLSTTEAE
Sbjct: 1167 GIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAE 1226

Query: 595  FVAATTCACQAIWLRKILEEIHFKQEGPTPIYCDNSSTIKLSKNPV 458
            FV+A+  ACQA+WLR +LEEI  +QEG T ++CDNSSTIKLSKNPV
Sbjct: 1227 FVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPV 1272



 Score = 65.5 bits (158), Expect = 5e-07
 Identities = 30/62 (48%), Positives = 44/62 (70%)
 Frame = -3

Query: 458  LHGRCKHIDVKFYFLRDLSRDGVINLIYCRSEDQIADIFTKSLKLTSFVKLRKLLGLCTL 279
            LHGR KHI V+++FLR+L ++G I L YC + DQ+ADI TK++K   F +LR  +G+   
Sbjct: 1273 LHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRRR 1332

Query: 278  ED 273
            E+
Sbjct: 1333 EE 1334