BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00037890
         (544 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP38376.1| Retrovirus-related Pol polyprotein from transposo...   130   7e-35
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   134   4e-33
gb|KYP37003.1| Retrovirus-related Pol polyprotein from transposo...   123   4e-31
emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]   127   1e-30
gb|KYP72181.1| Retrovirus-related Pol polyprotein from transposo...   123   1e-30
emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]   125   3e-30
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...   125   5e-30
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   125   5e-30
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   124   9e-30
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   123   2e-29
gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposo...   120   7e-29
gb|KYP47251.1| Retrovirus-related Pol polyprotein from transposo...   120   7e-29
ref|XP_012487714.1| PREDICTED: uncharacterized protein LOC105800...   117   8e-29
gb|KYP59913.1| Retrovirus-related Pol polyprotein from transposo...   117   1e-28
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   120   1e-28
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   120   1e-28
gb|KYP31489.1| Retrovirus-related Pol polyprotein from transposo...   116   2e-28
gb|KYP32605.1| Retrovirus-related Pol polyprotein from transposo...   114   2e-28
gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposo...   120   2e-28
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   120   2e-28

>gb|KYP38376.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 201

 Score =  130 bits (326), Expect = 7e-35
 Identities = 60/118 (50%), Positives = 78/118 (66%)
 Frame = +2

Query: 188 IWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFE 367
           +WH RLGHP+  I+  V KSCN+    N  D   C +C   K H+LPF  S TV + P E
Sbjct: 38  LWHSRLGHPSPRIVNTVLKSCNMPIAKNS-DSFFCQSCCMGKSHQLPFIDSKTVYTSPLE 96

Query: 368 LVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           L++SD+ GPSP+ +TNGA YY+ F+D +SKYTWIY L  KS AF  F+QF+   E+QF
Sbjct: 97  LIYSDIWGPSPIPATNGARYYIVFLDAYSKYTWIYLLQFKSQAFDAFIQFKSHAELQF 154


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  134 bits (336), Expect = 4e-33
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
 Frame = +2

Query: 53  YHFDLSQIKPQP-QNVMCNLSATTHPFSHNQFQVNLASTRNNLDCNIWHQRLGHPASDII 229
           Y FD S +  +P Q++  + S     FS      +L+ST      ++WH+RLGHP++  I
Sbjct: 482 YAFDSSHLALRPTQSLSKSPSVVASSFSSKVCTTSLSST-----FDLWHKRLGHPSAATI 536

Query: 230 AQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFELVHSDL*GPSPVKS 409
             V   CN++ H+NK+D + CS+C   K H+ PF+ S+T  + P EL+H DL GP+ V S
Sbjct: 537 KNVLSKCNVA-HINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHLDLWGPTLVLS 595

Query: 410 TNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
            +G  YY+ F+D FS+++WI+ L NKS+A K F+ F+  +E+QF
Sbjct: 596 NSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQF 639


>gb|KYP37003.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 321

 Score =  123 bits (309), Expect = 4e-31
 Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
 Frame = +2

Query: 53  YHFDLSQIKPQPQNVMCNLSATTHPFSHNQFQVNLASTRNNLDCN---IWHQRLGHPASD 223
           Y F   Q++  P N     S+     +++   V+     NN+  +   +WH RLGHP   
Sbjct: 96  YCFPNLQLQAAPSN-----SSAFIVSNNSNIVVSDVDVLNNVKSSSHTLWHARLGHPNFH 150

Query: 224 IIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFELVHSDL*GPSPV 403
           +   V + CN+   +NK+D   C+AC   K H+LP   SN+V  +P ELV+ DL GP+P+
Sbjct: 151 VQKLVSQQCNIPV-VNKIDGFFCNACCMGKAHRLPSNLSNSVYKNPLELVYRDLWGPAPI 209

Query: 404 KSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           +S+N   YY+SF+D +S++TWIY L NKSD    F QF+ ++E+QF
Sbjct: 210 QSSNNYKYYLSFVDAYSRFTWIYLLQNKSDTLTVFKQFKMMVELQF 255


>emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]
          Length = 1079

 Score =  127 bits (318), Expect = 1e-30
 Identities = 71/171 (41%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
 Frame = +2

Query: 53  YHFDLSQI---KPQPQNVMCNLSATTHPF---SHNQFQVN---LASTRNNLDCNIWHQRL 205
           Y FD SQI   K  P  V  + S T+H     ++ Q  ++   L S   +    IWH RL
Sbjct: 397 YAFDSSQIQLKKSAPSQVSLSQSVTSHQSGLRANCQVSIHVSDLQSQNGSSTVGIWHDRL 456

Query: 206 GHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFELVHSDL 385
           GHP+  I+  V   C LS     +    C AC   K H LPF TS +    P +LV+SDL
Sbjct: 457 GHPSFKIVQTVMSLCKLSKFNKILPNFVCKACCLGKIHMLPFPTSISEYQEPLQLVYSDL 516

Query: 386 *GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQ 538
            GPSPV+S+NG  YYV F+D FS+Y WIY L NKS++F+ F  F+   ++Q
Sbjct: 517 WGPSPVQSSNGYKYYVCFVDAFSRYNWIYLLRNKSNSFQTFQNFKAQAKLQ 567


>gb|KYP72181.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 363

 Score =  123 bits (308), Expect = 1e-30
 Identities = 55/118 (46%), Positives = 80/118 (67%)
 Frame = +2

Query: 188 IWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFE 367
           +WH RLGHP   +   V + CN+   +NK+D   C+AC   K H+LP   S++V  +P E
Sbjct: 139 LWHARLGHPNFHVQKLVSQQCNIPV-VNKIDGFFCNACCMGKAHRLPSNLSDSVYKNPLE 197

Query: 368 LVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           LV+SDL GP+P++S+N   YY+SF+D +S++TWIY L NKSD    F QF+ ++E+QF
Sbjct: 198 LVYSDLWGPAPIQSSNNYKYYLSFVDAYSRFTWIYLLQNKSDTLTVFKQFKMMVELQF 255


>emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]
          Length = 1007

 Score =  125 bits (314), Expect = 3e-30
 Identities = 56/118 (47%), Positives = 80/118 (67%)
 Frame = +2

Query: 188 IWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFE 367
           +WH RLGHPA +I+  +  SCN+S   +K ++  C AC  AK HKLPF  S +  SHPF 
Sbjct: 173 LWHSRLGHPADNILKHILTSCNISHQCHKNNV--CCACQFAKSHKLPFNVSVSRASHPFA 230

Query: 368 LVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           L+H+DL GP+ + ST GA Y++ F+D FS ++WIY L++K  A   F++F+ L+E QF
Sbjct: 231 LLHADLWGPTSIPSTTGARYFILFVDDFSHFSWIYPLHSKDQALSXFIKFKSLVENQF 288


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score =  125 bits (313), Expect = 5e-30
 Identities = 57/117 (48%), Positives = 78/117 (66%)
 Frame = +2

Query: 191 WHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFEL 370
           WH RLGHP+  I+ ++     L    N V+   C AC +AKCH+LPF  S +V ++P EL
Sbjct: 454 WHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLEL 513

Query: 371 VHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           +HSD+ GP+  +S     YYVSFID +SK+ WIYFL +KS+ F+ F +FQKL+E QF
Sbjct: 514 IHSDVWGPAS-ESVGAKKYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVEWQF 569


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score =  125 bits (313), Expect = 5e-30
 Identities = 57/117 (48%), Positives = 78/117 (66%)
 Frame = +2

Query: 191 WHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFEL 370
           WH RLGHP+  I+ ++     L    N V+   C AC +AKCH+LPF  S +V ++P EL
Sbjct: 445 WHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLEL 504

Query: 371 VHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           +HSD+ GP+  +S     YYVSFID +SK+ WIYFL +KS+ F+ F +FQKL+E QF
Sbjct: 505 IHSDVWGPAS-ESVGAKKYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVERQF 560


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1007

 Score =  124 bits (311), Expect = 9e-30
 Identities = 64/141 (45%), Positives = 86/141 (60%)
 Frame = +2

Query: 116 TTHPFSHNQFQVNLASTRNNLDCNIWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCS 295
           TT  +S  Q    L S ++  +  +WH RLGHP+S I+  V   C +S + N  +L+ C 
Sbjct: 72  TTDSYSAYQAVTELNSAQSFSNLQLWHARLGHPSSKIVKTVLDKCQISCNTNN-NLN-CH 129

Query: 296 ACYKAKCHKLPFTTSNTVISHPFELVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYF 475
           +C   K H+LPF  S TV S P ELV +D+ GPSP+ ST+G+ YY+ F+D FSKY+WIY 
Sbjct: 130 SCCLGKVHQLPFIQSTTVYSKPLELVFTDIWGPSPIASTDGSRYYIVFLDAFSKYSWIYL 189

Query: 476 LNNKSDAFKDFLQFQKLIEIQ 538
           L  KS A   FLQ + L E Q
Sbjct: 190 LQYKSQALYAFLQLKSLAEKQ 210


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  123 bits (308), Expect = 2e-29
 Identities = 64/162 (39%), Positives = 92/162 (56%)
 Frame = +2

Query: 53  YHFDLSQIKPQPQNVMCNLSATTHPFSHNQFQVNLASTRNNLDCNIWHQRLGHPASDIIA 232
           Y FD +Q+K    N  C  ++T  P        +  S        +WH RLGHP+S I++
Sbjct: 467 YVFDNTQLKLPLHNSSC-FASTALPSKEPTVPASPTSP-----FTLWHNRLGHPSSHIVS 520

Query: 233 QVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFELVHSDL*GPSPVKST 412
            V   CNL  H+NK+    CS C   K HK  F  S +  + P EL+H+DL GP+   S+
Sbjct: 521 LVLNKCNLP-HLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPASTPSS 579

Query: 413 NGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQ 538
           +G  YY+ FID +S++TWIY L +KS+AF+ FL F+  +E+Q
Sbjct: 580 HGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQ 621


>gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 533

 Score =  120 bits (302), Expect = 7e-29
 Identities = 59/135 (43%), Positives = 81/135 (60%)
 Frame = +2

Query: 137 NQFQVNLASTRNNLDCNIWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKC 316
           N+  + +  TR + D  +WH RL H +  I+  V K+CN+   +N  D   C +C   K 
Sbjct: 332 NRTTLYVQRTRKSYD--VWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKS 389

Query: 317 HKLPFTTSNTVISHPFELVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDA 496
           H LPF+ S TV + P ELV+SD+ GPS   S  G  YYV F D FSKYTWIYF++NKS+ 
Sbjct: 390 HTLPFSDSYTVYNSPLELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSET 449

Query: 497 FKDFLQFQKLIEIQF 541
              F+ F+ ++E QF
Sbjct: 450 AHHFIHFKSMVENQF 464


>gb|KYP47251.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 536

 Score =  120 bits (302), Expect = 7e-29
 Identities = 54/120 (45%), Positives = 79/120 (65%)
 Frame = +2

Query: 179 DCNIWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISH 358
           D ++WH RL H +   + +V  SCN+    NK+    CS+C   K HKLPF+ S  V + 
Sbjct: 367 DVSLWHSRLAHCSFKALKRVMVSCNIVVAENKMPF-VCSSCCIGKSHKLPFSISKIVYND 425

Query: 359 PFELVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQ 538
           P E+++SD+ GPSP  S +G  YY+ F+D FSK+TW+YFL NKS+A   F+QF+ ++E+Q
Sbjct: 426 PLEMIYSDIWGPSPTPSRDGFRYYIIFVDAFSKFTWLYFLQNKSEALNCFIQFKDMVELQ 485


>ref|XP_012487714.1| PREDICTED: uncharacterized protein LOC105800896 [Gossypium
           raimondii]
          Length = 296

 Score =  117 bits (292), Expect = 8e-29
 Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
 Frame = +2

Query: 53  YHFDLSQIKPQPQNVMCNLSATTHPFSHNQFQVNLASTRNNLDC-NIWHQRLGHPASDII 229
           Y FDLS  +       C  +  ++   H     +L    +N+   ++WH+RLGHP +  I
Sbjct: 34  YQFDLSDTQS------CTAALASYTTVHT---TSLELPGSNVSFFDLWHKRLGHPCNKTI 84

Query: 230 AQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFELVHSDL*GPSPVKS 409
             V + CNL+S ++ ++   CSAC   K +KLPF+ S TV +  FEL+ SDL GP+P+ S
Sbjct: 85  MSVLQKCNLASKVSMMN-SICSACQLGKFYKLPFSPSTTVYTALFELLVSDLWGPAPMAS 143

Query: 410 TNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEI 535
             G  YY+SF+D  S Y WIY +N KS A   FLQ QKL+E+
Sbjct: 144 -EGYFYYISFVDVHSMYVWIYLINRKSKALDKFLQLQKLVEV 184


>gb|KYP59913.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 326

 Score =  117 bits (292), Expect = 1e-28
 Identities = 59/142 (41%), Positives = 81/142 (57%)
 Frame = +2

Query: 116 TTHPFSHNQFQVNLASTRNNLDCNIWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCS 295
           T  P   N   +N+   R + D  +WH RL H +  I+  V K+CN+   +N  D   C 
Sbjct: 149 TVDPVPTNLTTLNVQRYRESYD--VWHNRLAHASRKIVKVVMKTCNVPLPINNKDSIVCK 206

Query: 296 ACYKAKCHKLPFTTSNTVISHPFELVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYF 475
           +C   K H LPF+ S TV + P ELV+SD+ GPS   S  G  YYV F D +SKYTWIYF
Sbjct: 207 SCCIGKSHTLPFSYSFTVYNSPLELVYSDVWGPSHYVSREGFRYYVHFTDAYSKYTWIYF 266

Query: 476 LNNKSDAFKDFLQFQKLIEIQF 541
           ++NKS+     + F+ ++E QF
Sbjct: 267 MHNKSETAHHVIHFKTMVENQF 288


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 1403

 Score =  120 bits (302), Expect = 1e-28
 Identities = 59/135 (43%), Positives = 81/135 (60%)
 Frame = +2

Query: 137 NQFQVNLASTRNNLDCNIWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKC 316
           N+  + +  TR + D  +WH RL H +  I+  V K+CN+   +N  D   C +C   K 
Sbjct: 466 NRTTLYVQRTRKSYD--VWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKS 523

Query: 317 HKLPFTTSNTVISHPFELVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDA 496
           H LPF+ S TV + P ELV+SD+ GPS   S  G  YYV F D FSKYTWIYF++NKS+ 
Sbjct: 524 HTLPFSDSYTVYNSPLELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSET 583

Query: 497 FKDFLQFQKLIEIQF 541
              F+ F+ ++E QF
Sbjct: 584 AHHFIHFKSMVENQF 598


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  120 bits (302), Expect = 1e-28
 Identities = 54/118 (45%), Positives = 78/118 (66%)
 Frame = +2

Query: 188 IWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFE 367
           +WH RLGHPA +I+  +  SCN+S   +K ++  C AC  AK HKLPF    +  SHP  
Sbjct: 521 LWHSRLGHPADNILKHILTSCNISHQCHKNNV--CCACQFAKSHKLPFNVXVSRASHPLA 578

Query: 368 LVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           L+H+DL GP  + ST GA Y++ F+D FS+++WIY L++K  A   F++F+ L+E QF
Sbjct: 579 LLHADLWGPXSIPSTTGARYFILFVDDFSRFSWIYPLHSKDQALSVFIKFKSLVENQF 636


>gb|KYP31489.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 311

 Score =  116 bits (291), Expect = 2e-28
 Identities = 54/117 (46%), Positives = 75/117 (64%)
 Frame = +2

Query: 188 IWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFE 367
           +WH RLGHP+  I+    K CN+ S ++  D   C +C   K H+LPF  S T    P E
Sbjct: 122 LWHSRLGHPSPRIVKFALKHCNIPS-IHFPDSFLCDSCCMGKAHQLPFVQSTTEYKSPIE 180

Query: 368 LVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQ 538
           LV +D+ GPSPV S+ GA +Y+ F+D +S+Y+WIY LN+KS AF  F+QF+   E+Q
Sbjct: 181 LVFTDIWGPSPVPSSTGARHYIIFLDAYSRYSWIYLLNSKSQAFDAFVQFKTSAELQ 237


>gb|KYP32605.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 206

 Score =  114 bits (284), Expect = 2e-28
 Identities = 53/117 (45%), Positives = 75/117 (64%)
 Frame = +2

Query: 188 IWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFE 367
           +WH RLGHP+  I+    ++ ++  + N  D   C +C   K H+LPF  SN+    P +
Sbjct: 23  LWHSRLGHPSPKILKVALRNSHIPCN-NFPDSVLCESCCMGKAHQLPFINSNSEYHTPLQ 81

Query: 368 LVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQ 538
           LV SD+ GPSPV ++ GA YY+ F+D FSKY+WIY LN+KS+AF  F QF+   E+Q
Sbjct: 82  LVFSDIWGPSPVATSTGARYYIVFLDAFSKYSWIYLLNSKSEAFTAFQQFKSSAELQ 138


>gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 623

 Score =  120 bits (300), Expect = 2e-28
 Identities = 55/119 (46%), Positives = 78/119 (65%)
 Frame = +2

Query: 185 NIWHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPF 364
           ++WH RLGHP   ++  V K C +    NK ++  C AC   K H+LP ++S TV S P 
Sbjct: 103 SLWHNRLGHPCFSVLQNVLKFCKIPVS-NKNEVQFCVACCMGKSHRLPSSSSTTVYSTPL 161

Query: 365 ELVHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           EL+  DL GP+P+ S+ G  YY+SF+D +S++TWIYFL NKS+A   F QFQ + ++QF
Sbjct: 162 ELLFCDLWGPTPMLSSMGYHYYMSFVDAYSRFTWIYFLKNKSEALTIFKQFQAMAKLQF 220


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 785

 Score =  120 bits (300), Expect = 2e-28
 Identities = 55/117 (47%), Positives = 74/117 (63%)
 Frame = +2

Query: 191 WHQRLGHPASDIIAQVFKSCNLSSHMNKVDLDSCSACYKAKCHKLPFTTSNTVISHPFEL 370
           WH RLGHP +D+I  VF+ CN    +NK   D C+ C   K HKLP  +S TV   PFEL
Sbjct: 405 WHSRLGHPHNDVIKSVFRLCNFPI-INKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFEL 463

Query: 371 VHSDL*GPSPVKSTNGASYYVSFIDHFSKYTWIYFLNNKSDAFKDFLQFQKLIEIQF 541
           ++SDL GP+P+ S NG  YYV+F+D  +++TWI+ L  K+     F QF  +I+ QF
Sbjct: 464 IYSDLWGPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQF 520