BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00022117
         (506 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP76577.1| Retrovirus-related Pol polyprotein from transposo...   216   8e-67
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   224   8e-66
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   223   1e-64
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     220   2e-63
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   218   3e-63
gb|KYP76581.1| Retrovirus-related Pol polyprotein from transposo...   199   1e-62
gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-...   202   4e-62
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   214   9e-62
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   214   1e-61
gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]     209   3e-61
gb|KYP69579.1| Retrovirus-related Pol polyprotein from transposo...   196   6e-61
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     212   1e-60
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   212   1e-60
gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subc...   209   1e-60
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   207   6e-59
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]   197   5e-57
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]        200   7e-57
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   201   8e-57
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   198   7e-56
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   196   2e-55

>gb|KYP76577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 368

 Score =  216 bits (550), Expect = 8e-67
 Identities = 108/166 (65%), Positives = 124/166 (74%)
 Frame = +3

Query: 9   GVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGDEH 188
           GV+LS    PKT EER RM+R+PYASA+G+IMY M CTRPDVA A  V SRYQ+NPG+E+
Sbjct: 167 GVTLSNEDCPKTLEERTRMNRVPYASAVGAIMYIMTCTRPDVAFAPGVVSRYQANPGEEN 226

Query: 189 WKAVKMILKYLRRTKDMFLIYGSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGAVSW 368
           WK VK ILKYLRRT+D FLIYG  EL L+G+T               GY+F L GGAVSW
Sbjct: 227 WKVVKTILKYLRRTQDQFLIYGGTELMLKGYTDASFASDKDDSKSISGYVFTLYGGAVSW 286

Query: 369 KSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
           KSSKQ T ADSTTEAEYIAASDA KEAVW++ FI  LGVVPS+ +P
Sbjct: 287 KSSKQATVADSTTEAEYIAASDATKEAVWMKKFITELGVVPSIEEP 332


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  224 bits (572), Expect = 8e-66
 Identities = 112/169 (66%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            +HG++LSK   P T +ER++MS IPYASAIGSIMYAM+CTRPDV++ALSVTSRYQ++P +
Sbjct: 649  AHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSE 708

Query: 183  EHWKAVKMILKYLRRTKDMFLIYGSG-ELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKD+FL+YG   EL + G+T               G++FILNGGA
Sbjct: 709  GHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGA 768

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQET ADSTTEAEYIAAS+AAKE VWIRNFI  LG+VPS   P
Sbjct: 769  VSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSASSP 817


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  223 bits (569), Expect = 1e-64
 Identities = 114/169 (67%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG+S SK+  P T +ER+RM+ IPYASAIGSIMYAM+CTR DV++ALSVTSRYQ++PG+
Sbjct: 1065 SHGISPSKSQRPSTTDERDRMNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQADPGE 1124

Query: 183  EHWKAVKMILKYLRRTKDMFLIYGSG-ELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKD FLIYG   EL + G+T               G++FILNGGA
Sbjct: 1125 CHWTAVKNILKYLRRTKDAFLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGA 1184

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQET ADSTT+AEYIAAS+AAKE VWIRNFI  LGVVPS   P
Sbjct: 1185 VSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSASSP 1233


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  220 bits (560), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++LSK   P+T +ER +M  +PYASAIGSIMYAMLCTRPDV++ALS TSRYQS+PG+
Sbjct: 1069 SHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGE 1128

Query: 183  EHWKAVKMILKYLRRTKDMFLIYGSGE-LKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFL+YG  E L + G+T               G++F LNGGA
Sbjct: 1129 GHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGA 1188

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQ+T ADSTTEAEYIAAS+AAKEAVWI+ F+  LGV+ S   P
Sbjct: 1189 VSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGP 1237


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  218 bits (555), Expect = 3e-63
 Identities = 112/169 (66%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++LSK   P T +ERERMS+IPYASAIGSIMYAML TRPDVA ALS+TSRYQS+PG+
Sbjct: 716  SHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGE 775

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW  V+ I KYLRRTKD FL+Y GS EL + G+T               G+ F LNGGA
Sbjct: 776  SHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGA 835

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKS+KQ T ADSTTEAEYIAAS+AAKE VWIR FI  LGVVPS+  P
Sbjct: 836  VSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGP 884


>gb|KYP76581.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 184

 Score =  199 bits (507), Expect = 1e-62
 Identities = 98/148 (66%), Positives = 113/148 (76%)
 Frame = +3

Query: 63  MSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGDEHWKAVKMILKYLRRTKDMF 242
           M+R+PYASA+G+IMY M CTRPDVA A  V SRYQ+NPG+E+WK VK ILKYLRRT+D F
Sbjct: 1   MNRVPYASAVGAIMYIMTCTRPDVAFAPGVVSRYQANPGEENWKVVKTILKYLRRTQDQF 60

Query: 243 LIYGSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGAVSWKSSKQETTADSTTEAEYI 422
           LIYG  EL L+G+T               GY+F L GGAVSWKSSKQ T ADSTTEAEYI
Sbjct: 61  LIYGGTELMLKGYTDASFASDKDDSKSISGYVFTLYGGAVSWKSSKQATVADSTTEAEYI 120

Query: 423 AASDAAKEAVWIRNFIQGLGVVPSVVDP 506
           AASDAAKEAVW++ FI  LGVVPS+ +P
Sbjct: 121 AASDAAKEAVWMKKFITELGVVPSIEEP 148


>gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550175|gb|ABA92972.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 305

 Score =  202 bits (514), Expect = 4e-62
 Identities = 103/169 (60%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
           SH ++L K    +T +ER +MS IPYASAIGSIMYAMLCTRPDV++ALS TSRYQS+PG+
Sbjct: 52  SHDINLGKNQCSQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGE 111

Query: 183 EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
            HW AVK ILKYL RTKDMFL+Y G  EL +  +T               G++F LNGGA
Sbjct: 112 THWIAVKNILKYLIRTKDMFLVYGGQEELVVNDYTDASFQTDKDDFRSQSGFVFCLNGGA 171

Query: 360 VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
           VSWKSSKQ+T A+STT+ EYIAAS+AAKEAVWI+ F+  LGV+ S   P
Sbjct: 172 VSWKSSKQDTLANSTTKTEYIAASEAAKEAVWIKKFVSQLGVMTSTSSP 220


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  214 bits (544), Expect = 9e-62
 Identities = 108/169 (63%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+T +ER +MS IPYASAIGSIMYAMLCTRPDV +ALS TS+YQS+PG+
Sbjct: 693  SHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVPYALSATSQYQSDPGE 752

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFLIY G  EL +  +T               G++F LNGGA
Sbjct: 753  SHWIAVKNILKYLRRTKDMFLIYGGQEELVVNNYTDASFQTDKDDFRSQSGFVFCLNGGA 812

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQ+T ADSTTEAEYIAAS+AAKEA WI+ F+  LGV+ S   P
Sbjct: 813  VSWKSSKQDTVADSTTEAEYIAASEAAKEAAWIKKFVSQLGVMTSASSP 861


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  214 bits (545), Expect = 1e-61
 Identities = 107/169 (63%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+T +ER +MS IPYASAIGSIMYAMLCT PDV++ALS TSRYQS+PG+
Sbjct: 803  SHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTHPDVSYALSATSRYQSDPGE 862

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFL+Y G  EL ++G+T               G++F LNGGA
Sbjct: 863  SHWIAVKNILKYLRRTKDMFLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCLNGGA 922

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQ+T  DS TEAEYIAAS+AAKEAVWI+ F+  LGV+ S   P
Sbjct: 923  VSWKSSKQDTVVDSITEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSP 971


>gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 657

 Score =  209 bits (531), Expect = 3e-61
 Identities = 105/169 (62%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
           SHG++L K   P+  +ER +MS IPYASAIG IMYAMLCTRPDV++ALS TSRYQ +PG+
Sbjct: 433 SHGINLGKNQCPQATDERNKMSVIPYASAIGCIMYAMLCTRPDVSYALSATSRYQLDPGE 492

Query: 183 EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
            HW AVK ILKYLRRTKDMFL+Y G  EL + G+T                ++F LNGGA
Sbjct: 493 SHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGA 552

Query: 360 VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
           VSWKSSKQ+T ADSTTEAEYIAAS+AAK+AVWI+ F+  LGV+ S   P
Sbjct: 553 VSWKSSKQDTVADSTTEAEYIAASEAAKKAVWIKKFVSQLGVMTSASSP 601


>gb|KYP69579.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 213

 Score =  196 bits (498), Expect = 6e-61
 Identities = 98/157 (62%), Positives = 115/157 (73%)
 Frame = +3

Query: 9   GVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGDEH 188
           GV+ SK   PKT EERE M+RIPYASA+G+I Y M+CTRP+VA+ALS+ SRYQ+N G+EH
Sbjct: 56  GVTHSKEDCPKTHEEREHMTRIPYASAVGAITYTMICTRPNVAYALSLASRYQANLGEEH 115

Query: 189 WKAVKMILKYLRRTKDMFLIYGSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGAVSW 368
           WK VK ILKYLRRTKD FLIYG  ELKL+G+T                 +F LN GAVSW
Sbjct: 116 WKVVKTILKYLRRTKDQFLIYGDSELKLKGYTNASFESDKDDNKSISRCVFTLNCGAVSW 175

Query: 369 KSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGL 479
           KSSKQ T  DSTTE EYIAAS+AAKEA+W++ F   L
Sbjct: 176 KSSKQATVVDSTTEVEYIAASEAAKEAIWMKKFYLNL 212


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  212 bits (539), Expect = 1e-60
 Identities = 108/169 (63%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+T +ER +MS IPYASAIGSIMYAMLCTR DV++ALS TSRYQS+ G+
Sbjct: 931  SHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGE 990

Query: 183  EHWKAVKMILKYLRRTKDMFLIYG-SGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFL+YG   EL + G+T               G++F LNGGA
Sbjct: 991  SHWIAVKNILKYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGA 1050

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQ+T ADSTTEAEYIAAS+AAKEAVWI+ F+  LGV+ S   P
Sbjct: 1051 VSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSP 1099


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  212 bits (539), Expect = 1e-60
 Identities = 108/169 (63%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+T +ER +MS IPYASAIGSIMYAMLCTR DV++ALS TSRYQS+ G+
Sbjct: 1018 SHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGE 1077

Query: 183  EHWKAVKMILKYLRRTKDMFLIYG-SGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFL+YG   EL + G+T               G++F LNGGA
Sbjct: 1078 SHWIAVKNILKYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGA 1137

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQ+T ADSTTEAEYIAAS+AAKEAVWI+ F+  LGV+ S   P
Sbjct: 1138 VSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSP 1186


>gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 767

 Score =  209 bits (531), Expect = 1e-60
 Identities = 105/169 (62%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+  +ER +MS IPYASAIG IMYAMLCTRPDV++ALS TSRYQ +PG+
Sbjct: 543  SHGINLGKNQCPQATDERNKMSVIPYASAIGCIMYAMLCTRPDVSYALSATSRYQLDPGE 602

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFL+Y G  EL + G+T                ++F LNGGA
Sbjct: 603  SHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGA 662

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            VSWKSSKQ+T ADSTTEAEYIAAS+AAK+AVWI+ F+  LGV+ S   P
Sbjct: 663  VSWKSSKQDTVADSTTEAEYIAASEAAKKAVWIKKFVSQLGVMTSASSP 711


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  207 bits (526), Expect = 6e-59
 Identities = 104/164 (63%), Positives = 123/164 (75%), Gaps = 1/164 (0%)
 Frame = +3

Query: 18   LSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGDEHWKA 197
            LSK  SP T EE   MSR+PYASA+GSIMYAM CTRPDVA ALS+ SRYQ NPG  HW A
Sbjct: 1057 LSKTQSPSTDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIA 1116

Query: 198  VKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGAVSWKS 374
            VK ILKYLRRTK+M L+  GS  L++EG+T               G++F+LNGGAV+WKS
Sbjct: 1117 VKNILKYLRRTKNMVLVLGGSDTLRVEGYTDASFQTDRDSGRSQSGWVFLLNGGAVTWKS 1176

Query: 375  SKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            SKQET ADST E+EYIAAS+A+KEA W++NFI  LGVVPS+ +P
Sbjct: 1177 SKQETVADSTCESEYIAASEASKEAAWLKNFIGDLGVVPSIQEP 1220


>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score =  197 bits (501), Expect = 5e-57
 Identities = 96/167 (57%), Positives = 117/167 (70%)
 Frame = +3

Query: 6   HGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGDE 185
           HG+ LSK  SPKTPEE E M  +PYASA+GS+MYAMLCTRPD+  A+ + SR+QSN G E
Sbjct: 385 HGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDICFAVGMVSRFQSNXGRE 444

Query: 186 HWKAVKMILKYLRRTKDMFLIYGSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGAVS 365
           HW AVK I+KYL+RT+D  L++ S  L   G+T               G +F L GGA+S
Sbjct: 445 HWXAVKHIIKYLKRTRDYMLVFQSENLXPIGYTDSDFQSDQDSRKSTSGNVFXLGGGAIS 504

Query: 366 WKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
           W+S KQ   ADST EAEY+AAS+AAKEAVW+RNF+  LGVVPSV  P
Sbjct: 505 WRSIKQTXVADSTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQSP 551


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score =  200 bits (509), Expect = 7e-57
 Identities = 99/157 (63%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SH ++L K   P+T +ER +MS IPYASAIGSIMYAMLCT PDV++ALS T+RYQS+PG+
Sbjct: 791  SHDINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTCPDVSYALSATNRYQSDPGE 850

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRT+DMFL+Y G  EL + G+T               G++F LNGG 
Sbjct: 851  SHWIAVKNILKYLRRTEDMFLVYGGQEELVVNGYTDASFQTDKDDFRSRSGFVFCLNGGV 910

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFI 470
            VSWKSSKQ+T ADSTTEAEYIAAS+AAK+AVWI+ F+
Sbjct: 911  VSWKSSKQDTVADSTTEAEYIAASEAAKDAVWIKKFV 947


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  201 bits (510), Expect = 8e-57
 Identities = 104/165 (63%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+T +ER +MS IPYASAIGSIMYAMLCTRPDV++ALS TSRYQS+PG+
Sbjct: 940  SHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGE 999

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW AVK ILKYLRRTKDMFL Y G  EL + G+T               G++F LNGGA
Sbjct: 1000 SHWIAVKNILKYLRRTKDMFLAYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFCLNGGA 1059

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPS 494
            VSWKSSKQ+   DSTTEAEYIAAS    EAVWI+ F+  LGV+ S
Sbjct: 1060 VSWKSSKQDIVVDSTTEAEYIAAS----EAVWIKKFVSQLGVMTS 1100


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  198 bits (503), Expect = 7e-56
 Identities = 96/167 (57%), Positives = 118/167 (70%)
 Frame = +3

Query: 6    HGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGDE 185
            HG+ LSK  SPKTPEE E M  +PYASA+GS+MYAMLCTRPD+  A+ + SR+QSNPG E
Sbjct: 1037 HGIVLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDIYFAVGMVSRFQSNPGRE 1096

Query: 186  HWKAVKMILKYLRRTKDMFLIYGSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGAVS 365
            HW AVK I+KYL+RT+D  L++ S  L   G+T               G +F+L GGA+S
Sbjct: 1097 HWTAVKHIIKYLKRTRDYMLVFQSENLVPIGYTDSDFQSDQDSRKSTSGNVFVLGGGAIS 1156

Query: 366  WKSSKQETTADSTTEAEYIAASDAAKEAVWIRNFIQGLGVVPSVVDP 506
            W+S KQ   AD T EAEY+AAS+AAKEAVW+RNF+  LGVVPSV  P
Sbjct: 1157 WRSIKQTCVADFTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQSP 1203


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550379|gb|ABA93176.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 938

 Score =  196 bits (499), Expect = 2e-55
 Identities = 99/151 (65%), Positives = 116/151 (76%), Gaps = 1/151 (0%)
 Frame = +3

Query: 3    SHGVSLSKAMSPKTPEERERMSRIPYASAIGSIMYAMLCTRPDVAHALSVTSRYQSNPGD 182
            SHG++L K   P+T  ER +MS IPYASAIGSIMYAMLCTRPDV++ALS TS+YQS+PG+
Sbjct: 788  SHGINLGKNQCPQTTNERNKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSQYQSDPGE 847

Query: 183  EHWKAVKMILKYLRRTKDMFLIY-GSGELKLEGFTXXXXXXXXXXXXXXXGYIFILNGGA 359
             HW A+K ILKYLRRTKDMFL+Y G  EL + G+T               G++F LNGGA
Sbjct: 848  SHWIALKNILKYLRRTKDMFLVYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFYLNGGA 907

Query: 360  VSWKSSKQETTADSTTEAEYIAASDAAKEAV 452
            VSWKSSKQ+T ADSTTEAEYIAAS+AAKE V
Sbjct: 908  VSWKSSKQDTVADSTTEAEYIAASEAAKEVV 938