BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00021875
         (1898 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011087492.1| PREDICTED: RNA polymerase II-associated prot...   720   0.0  
ref|XP_011087491.1| PREDICTED: RNA polymerase II-associated prot...   714   0.0  
ref|XP_012840399.1| PREDICTED: RNA polymerase II-associated prot...   688   0.0  
ref|XP_012840398.1| PREDICTED: RNA polymerase II-associated prot...   683   0.0  
gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Erythra...   659   0.0  
ref|XP_009767310.1| PREDICTED: RNA polymerase II-associated prot...   527   e-180
ref|XP_009611909.1| PREDICTED: RNA polymerase II-associated prot...   526   e-180
ref|XP_009767318.1| PREDICTED: RNA polymerase II-associated prot...   522   e-178
ref|XP_009611910.1| PREDICTED: RNA polymerase II-associated prot...   521   e-178
ref|XP_009767301.1| PREDICTED: RNA polymerase II-associated prot...   516   e-176
emb|CDP18255.1| unnamed protein product [Coffea canephora]            509   e-173
ref|XP_009767331.1| PREDICTED: RNA polymerase II-associated prot...   508   e-173
ref|XP_009611911.1| PREDICTED: RNA polymerase II-associated prot...   506   e-172
ref|XP_009767326.1| PREDICTED: RNA polymerase II-associated prot...   504   e-171
ref|XP_015056193.1| PREDICTED: RNA polymerase II-associated prot...   502   e-170
ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated prot...   498   e-168
ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated prot...   497   e-168
ref|XP_015056194.1| PREDICTED: RNA polymerase II-associated prot...   497   e-168
ref|XP_010327507.1| PREDICTED: RNA polymerase II-associated prot...   493   e-166
ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated prot...   492   e-166

>ref|XP_011087492.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Sesamum
            indicum]
          Length = 470

 Score =  720 bits (1859), Expect = 0.0
 Identities = 375/475 (78%), Positives = 402/475 (84%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPSKHSRD  QDFEGLLNNLQDWELSFKDKDKKLR D   +GKLD  GQ SR+ AS 
Sbjct: 1    MARVPSKHSRDQAQDFEGLLNNLQDWELSFKDKDKKLRSDGVSEGKLDLLGQASRSTAS- 59

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                ARVNGKQTM K+PSSDNTS VRQYDYL EYEALSRLS G+ SQES VDANSEKELG
Sbjct: 60   ----ARVNGKQTMEKSPSSDNTSAVRQYDYLTEYEALSRLSGGIQSQESFVDANSEKELG 115

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF +AIDCYSRSIALSPTAVAYANRAM+YIK+KRFQEAENDCTEALNLDDRYI
Sbjct: 116  NEFFKQKKFVDAIDCYSRSIALSPTAVAYANRAMAYIKLKRFQEAENDCTEALNLDDRYI 175

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES DDAEFALRLEPQNQEIKKQYA+ KSLLQK+ILK+ASG LA
Sbjct: 176  KAYSRRSTARKELGKLKESIDDAEFALRLEPQNQEIKKQYAELKSLLQKEILKKASGGLA 235

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
            GSV GA+PG  EVDKNK V KLQ+VSTSSP G+VAEILE+HP+GNNIR+VAAETSME+E 
Sbjct: 236  GSVRGAQPGKPEVDKNKNVQKLQAVSTSSPEGRVAEILEEHPEGNNIRDVAAETSMEVET 295

Query: 878  NSMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQF 699
            N++RS G   D+GS TAK   K++KQELR SVQ               KNIVPP SAYQF
Sbjct: 296  NNIRSTGFKPDTGSGTAKKKTKDTKQELRASVQELAAKAASLAKAEAAKNIVPPNSAYQF 355

Query: 698  EMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVEY 519
            E+SWRG SGD DLQ RLLKVTSP ALPGIFKNALSA ILVD+IRCIATFF EDMALGVEY
Sbjct: 356  EVSWRGFSGDRDLQARLLKVTSPTALPGIFKNALSASILVDVIRCIATFFTEDMALGVEY 415

Query: 518  LQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYGTKQ 354
            LQNL KIPRFDMIIMCL   DKAD+ KIW+EVFSKG TDY +ILGNLR RYG KQ
Sbjct: 416  LQNLAKIPRFDMIIMCLSPLDKADLSKIWNEVFSKGMTDYTDILGNLRLRYGIKQ 470


>ref|XP_011087491.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Sesamum
            indicum]
          Length = 476

 Score =  714 bits (1842), Expect = 0.0
 Identities = 375/481 (77%), Positives = 402/481 (83%), Gaps = 6/481 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQD------FEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPS 1617
            MA VPSKHSRD  QD      FEGLLNNLQDWELSFKDKDKKLR D   +GKLD  GQ S
Sbjct: 1    MARVPSKHSRDQAQDCLTGQDFEGLLNNLQDWELSFKDKDKKLRSDGVSEGKLDLLGQAS 60

Query: 1616 RNNASRFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDAN 1437
            R+ AS     ARVNGKQTM K+PSSDNTS VRQYDYL EYEALSRLS G+ SQES VDAN
Sbjct: 61   RSTAS-----ARVNGKQTMEKSPSSDNTSAVRQYDYLTEYEALSRLSGGIQSQESFVDAN 115

Query: 1436 SEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALN 1257
            SEKELGNEFFKQKKF +AIDCYSRSIALSPTAVAYANRAM+YIK+KRFQEAENDCTEALN
Sbjct: 116  SEKELGNEFFKQKKFVDAIDCYSRSIALSPTAVAYANRAMAYIKLKRFQEAENDCTEALN 175

Query: 1256 LDDRYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKR 1077
            LDDRYIKAYSRRSTARKELGKLKES DDAEFALRLEPQNQEIKKQYA+ KSLLQK+ILK+
Sbjct: 176  LDDRYIKAYSRRSTARKELGKLKESIDDAEFALRLEPQNQEIKKQYAELKSLLQKEILKK 235

Query: 1076 ASGALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAET 897
            ASG LAGSV GA+PG  EVDKNK V KLQ+VSTSSP G+VAEILE+HP+GNNIR+VAAET
Sbjct: 236  ASGGLAGSVRGAQPGKPEVDKNKNVQKLQAVSTSSPEGRVAEILEEHPEGNNIRDVAAET 295

Query: 896  SMEIEINSMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPP 717
            SME+E N++RS G   D+GS TAK   K++KQELR SVQ               KNIVPP
Sbjct: 296  SMEVETNNIRSTGFKPDTGSGTAKKKTKDTKQELRASVQELAAKAASLAKAEAAKNIVPP 355

Query: 716  KSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDM 537
             SAYQFE+SWRG SGD DLQ RLLKVTSP ALPGIFKNALSA ILVD+IRCIATFF EDM
Sbjct: 356  NSAYQFEVSWRGFSGDRDLQARLLKVTSPTALPGIFKNALSASILVDVIRCIATFFTEDM 415

Query: 536  ALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYGTK 357
            ALGVEYLQNL KIPRFDMIIMCL   DKAD+ KIW+EVFSKG TDY +ILGNLR RYG K
Sbjct: 416  ALGVEYLQNLAKIPRFDMIIMCLSPLDKADLSKIWNEVFSKGMTDYTDILGNLRLRYGIK 475

Query: 356  Q 354
            Q
Sbjct: 476  Q 476


>ref|XP_012840399.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Erythranthe guttata]
          Length = 469

 Score =  688 bits (1776), Expect = 0.0
 Identities = 362/475 (76%), Positives = 397/475 (83%), Gaps = 1/475 (0%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKL-DRPGQPSRNNAS 1602
            MA  PSKHSRD PQ+ EGLLNNLQDWELSFK+KDKK+R DA GK KL D+ GQPS NN  
Sbjct: 1    MAKTPSKHSRDLPQELEGLLNNLQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 60

Query: 1601 RFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1422
            R  DSA+V+ KQTM KTPS +N STV+QYD+LKEYEALSRLSS VPS ES VDANSEKEL
Sbjct: 61   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 120

Query: 1421 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1242
            GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAM+YIKI+RFQEAENDCTEALNLDDRY
Sbjct: 121  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 180

Query: 1241 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1062
            IKAYSRRSTARKELGKLKES DDAEFALRLEPQNQEIKKQ+A+ KSLL+K ILK+ SGAL
Sbjct: 181  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 240

Query: 1061 AGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIE 882
             GSVEGA+PG SEVDKN  V K  S       G+V EILE++PKGN  REV A+TSMEI+
Sbjct: 241  TGSVEGAQPGKSEVDKNNNVQKPLS-------GRVTEILEENPKGNKSREVTADTSMEIK 293

Query: 881  INSMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQ 702
             NS+RSNGSD  + S+TAKT PKN KQ+L+ SVQ               KNIVPP SAYQ
Sbjct: 294  QNSVRSNGSDVITDSETAKTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPNSAYQ 353

Query: 701  FEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVE 522
            FE+SWRGLS D +LQTRLL+VTSPAALPGIFKNALSAPILVDIIRCIATFF+EDMAL V+
Sbjct: 354  FEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILVDIIRCIATFFVEDMALAVD 413

Query: 521  YLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYGTK 357
            YLQNLTKIPRFDMIIMCL SADK+D+ KIWDEVF KGT DY EIL +LR RYG K
Sbjct: 414  YLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADYGEILRDLRIRYGIK 468


>ref|XP_012840398.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Erythranthe guttata] gi|604329640|gb|EYU34894.1|
            hypothetical protein MIMGU_mgv1a005743mg [Erythranthe
            guttata]
          Length = 472

 Score =  683 bits (1762), Expect = 0.0
 Identities = 362/478 (75%), Positives = 397/478 (83%), Gaps = 4/478 (0%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKL-DRPGQPSRNNAS 1602
            MA  PSKHSRD PQ+ EGLLNNLQDWELSFK+KDKK+R DA GK KL D+ GQPS NN  
Sbjct: 1    MAKTPSKHSRDLPQELEGLLNNLQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 60

Query: 1601 RFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1422
            R  DSA+V+ KQTM KTPS +N STV+QYD+LKEYEALSRLSS VPS ES VDANSEKEL
Sbjct: 61   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 120

Query: 1421 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1242
            GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAM+YIKI+RFQEAENDCTEALNLDDRY
Sbjct: 121  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 180

Query: 1241 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1062
            IKAYSRRSTARKELGKLKES DDAEFALRLEPQNQEIKKQ+A+ KSLL+K ILK+ SGAL
Sbjct: 181  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 240

Query: 1061 AGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIE 882
             GSVEGA+PG SEVDKN  V K  S       G+V EILE++PKGN  REV A+TSMEI+
Sbjct: 241  TGSVEGAQPGKSEVDKNNNVQKPLS-------GRVTEILEENPKGNKSREVTADTSMEIK 293

Query: 881  INSMRSNGSDADSGSKTAK---TIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKS 711
             NS+RSNGSD  + S+TAK   T PKN KQ+L+ SVQ               KNIVPP S
Sbjct: 294  QNSVRSNGSDVITDSETAKLSQTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPNS 353

Query: 710  AYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMAL 531
            AYQFE+SWRGLS D +LQTRLL+VTSPAALPGIFKNALSAPILVDIIRCIATFF+EDMAL
Sbjct: 354  AYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILVDIIRCIATFFVEDMAL 413

Query: 530  GVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYGTK 357
             V+YLQNLTKIPRFDMIIMCL SADK+D+ KIWDEVF KGT DY EIL +LR RYG K
Sbjct: 414  AVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADYGEILRDLRIRYGIK 471


>gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Erythranthe guttata]
          Length = 462

 Score =  659 bits (1699), Expect = 0.0
 Identities = 354/478 (74%), Positives = 388/478 (81%), Gaps = 4/478 (0%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKL-DRPGQPSRNNAS 1602
            MA  PSKHSRD PQD          WELSFK+KDKK+R DA GK KL D+ GQPS NN  
Sbjct: 1    MAKTPSKHSRDLPQD----------WELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 50

Query: 1601 RFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1422
            R  DSA+V+ KQTM KTPS +N STV+QYD+LKEYEALSRLSS VPS ES VDANSEKEL
Sbjct: 51   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 110

Query: 1421 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1242
            GNEFFKQKKF EAIDCYSRSIALSP+AVAYANRAM+YIKI+RFQEAENDCTEALNLDDRY
Sbjct: 111  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 170

Query: 1241 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1062
            IKAYSRRSTARKELGKLKES DDAEFALRLEPQNQEIKKQ+A+ KSLL+K ILK+ SGAL
Sbjct: 171  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 230

Query: 1061 AGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIE 882
             GSVEGA+PG SEVDKN  V K  S       G+V EILE++PKGN  REV A+TSMEI+
Sbjct: 231  TGSVEGAQPGKSEVDKNNNVQKPLS-------GRVTEILEENPKGNKSREVTADTSMEIK 283

Query: 881  INSMRSNGSDADSGSKTAK---TIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKS 711
             NS+RSNGSD  + S+TAK   T PKN KQ+L+ SVQ               KNIVPP S
Sbjct: 284  QNSVRSNGSDVITDSETAKLSQTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPNS 343

Query: 710  AYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMAL 531
            AYQFE+SWRGLS D +LQTRLL+VTSPAALPGIFKNALSAPILVDIIRCIATFF+EDMAL
Sbjct: 344  AYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILVDIIRCIATFFVEDMAL 403

Query: 530  GVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYGTK 357
             V+YLQNLTKIPRFDMIIMCL SADK+D+ KIWDEVF KGT DY EIL +LR RYG K
Sbjct: 404  AVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADYGEILRDLRIRYGIK 461


>ref|XP_009767310.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Nicotiana sylvestris]
          Length = 464

 Score =  527 bits (1358), Expect = e-180
 Identities = 291/477 (61%), Positives = 344/477 (72%), Gaps = 5/477 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VP KH+RD  QD +GLLNNLQDWELS KDKDKK++  A GK KL    +   ++ S 
Sbjct: 1    MARVPGKHTRDQFQDMQGLLNNLQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSE 56

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                 +VNG Q +GK  S+  +     YDY K+Y   S LSS + S+ES +DANSEKELG
Sbjct: 57   LPTGPQVNGTQRVGK--STLISGAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELG 114

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF EAIDCYSRSIALSPTAVAYANRAM+Y+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 115  NEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRYI 174

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR SGA  
Sbjct: 175  KAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGATG 234

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
             S +GA+   +    NK  P +QSV +S    +V +I    P   + R+V   T+ME+E 
Sbjct: 235  VSAQGAQ---NTGKTNKTGPVIQSVGSSQKVAEVRKI----PAKESSRDVPG-TAMEVED 286

Query: 878  NSMR--SNGSDADSGSKT---AKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPK 714
              M+  S GSDA +   T   AK   KNSKQEL+ SVQ               KNI PP 
Sbjct: 287  THMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPN 346

Query: 713  SAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMA 534
            SAYQFE+SWRGLSGD DLQT LLKVTSP+ LP IFKNALSAP+L+DI+RC+ATF +EDM 
Sbjct: 347  SAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMD 406

Query: 533  LGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF KG  +++  LG LR +YG
Sbjct: 407  LAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYG 463


>ref|XP_009611909.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Nicotiana tomentosiformis]
          Length = 465

 Score =  526 bits (1355), Expect = e-180
 Identities = 293/477 (61%), Positives = 341/477 (71%), Gaps = 5/477 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPSKHSRD  QD +GLLN LQDWELS KDKDKK++  A GK KL    +   ++ S 
Sbjct: 1    MARVPSKHSRDQFQDMQGLLNTLQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSE 56

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                 +V G Q +GK+ S   +S    YDY K+Y   S LSS + S+ES +DANSEKELG
Sbjct: 57   LPTGPQVTGTQRVGKSTSI--SSAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELG 114

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF EAI CYSRSIALSPTAVAYANRAM+Y+KIKRFQEAENDCTEALNLDDRYI
Sbjct: 115  NEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 174

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR S A  
Sbjct: 175  KAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAATG 234

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
             S +GA+        NK  P +QSVS SS   KVAE+ +   K NN R+V   T+ME+E 
Sbjct: 235  VSAQGAQ---KTGKTNKTGPVIQSVSGSSQ--KVAEVRKIPAKENN-RDVPG-TAMEVED 287

Query: 878  NSMRSNGSDADSGS-----KTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPK 714
              M+ N  D+D+ +       AK   KNSKQEL+ SVQ               KNI PP 
Sbjct: 288  THMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPN 347

Query: 713  SAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMA 534
            SAYQFE+SWRGLSGD +LQT LLKVTSPA LP IFKNALSAP+L+DI+RC+ATF +EDM 
Sbjct: 348  SAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMD 407

Query: 533  LGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF KG  ++   L  LR  YG
Sbjct: 408  LAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYG 464


>ref|XP_009767318.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Nicotiana sylvestris]
          Length = 461

 Score =  522 bits (1344), Expect = e-178
 Identities = 290/477 (60%), Positives = 343/477 (71%), Gaps = 5/477 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VP KH+RD    F+GLLNNLQDWELS KDKDKK++  A GK KL    +   ++ S 
Sbjct: 1    MARVPGKHTRD---QFQGLLNNLQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSE 53

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                 +VNG Q +GK  S+  +     YDY K+Y   S LSS + S+ES +DANSEKELG
Sbjct: 54   LPTGPQVNGTQRVGK--STLISGAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELG 111

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF EAIDCYSRSIALSPTAVAYANRAM+Y+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 112  NEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRYI 171

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR SGA  
Sbjct: 172  KAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGATG 231

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
             S +GA+   +    NK  P +QSV +S    +V +I    P   + R+V   T+ME+E 
Sbjct: 232  VSAQGAQ---NTGKTNKTGPVIQSVGSSQKVAEVRKI----PAKESSRDVPG-TAMEVED 283

Query: 878  NSMR--SNGSDADSGSKT---AKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPK 714
              M+  S GSDA +   T   AK   KNSKQEL+ SVQ               KNI PP 
Sbjct: 284  THMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPN 343

Query: 713  SAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMA 534
            SAYQFE+SWRGLSGD DLQT LLKVTSP+ LP IFKNALSAP+L+DI+RC+ATF +EDM 
Sbjct: 344  SAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMD 403

Query: 533  LGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF KG  +++  LG LR +YG
Sbjct: 404  LAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYG 460


>ref|XP_009611910.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Nicotiana tomentosiformis]
          Length = 462

 Score =  521 bits (1341), Expect = e-178
 Identities = 292/477 (61%), Positives = 340/477 (71%), Gaps = 5/477 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPSKHSRD    F+GLLN LQDWELS KDKDKK++  A GK KL    +   ++ S 
Sbjct: 1    MARVPSKHSRD---QFQGLLNTLQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSE 53

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                 +V G Q +GK+ S   +S    YDY K+Y   S LSS + S+ES +DANSEKELG
Sbjct: 54   LPTGPQVTGTQRVGKSTSI--SSAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELG 111

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF EAI CYSRSIALSPTAVAYANRAM+Y+KIKRFQEAENDCTEALNLDDRYI
Sbjct: 112  NEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 171

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR S A  
Sbjct: 172  KAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAATG 231

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
             S +GA+        NK  P +QSVS SS   KVAE+ +   K NN R+V   T+ME+E 
Sbjct: 232  VSAQGAQ---KTGKTNKTGPVIQSVSGSSQ--KVAEVRKIPAKENN-RDVPG-TAMEVED 284

Query: 878  NSMRSNGSDADSGS-----KTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPK 714
              M+ N  D+D+ +       AK   KNSKQEL+ SVQ               KNI PP 
Sbjct: 285  THMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPN 344

Query: 713  SAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMA 534
            SAYQFE+SWRGLSGD +LQT LLKVTSPA LP IFKNALSAP+L+DI+RC+ATF +EDM 
Sbjct: 345  SAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMD 404

Query: 533  LGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF KG  ++   L  LR  YG
Sbjct: 405  LAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYG 461


>ref|XP_009767301.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Nicotiana sylvestris]
          Length = 484

 Score =  516 bits (1330), Expect = e-176
 Identities = 291/497 (58%), Positives = 344/497 (69%), Gaps = 25/497 (5%)
 Frame = -1

Query: 1778 MATVPSKHSRDP--------------------PQDFEGLLNNLQDWELSFKDKDKKLRLD 1659
            MA VP KH+RD                      QD +GLLNNLQDWELS KDKDKK++  
Sbjct: 1    MARVPGKHTRDQFQGFICSILSGLWFYWHYLADQDMQGLLNNLQDWELSLKDKDKKMKSQ 60

Query: 1658 AEGKGKLDRPGQPSRNNASRFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRL 1479
            A GK KL    +   ++ S      +VNG Q +GK  S+  +     YDY K+Y   S L
Sbjct: 61   ARGKEKL----REDWSHTSELPTGPQVNGTQRVGK--STLISGAAGPYDYSKKYNPTSHL 114

Query: 1478 SSGVPSQESVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIK 1299
            SS + S+ES +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRAM+Y+K+K
Sbjct: 115  SSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLK 174

Query: 1298 RFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQY 1119
            RFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY
Sbjct: 175  RFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQY 234

Query: 1118 ADCKSLLQKDILKRASGALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILED 939
             + K+L +K+ILKR SGA   S +GA+   +    NK  P +QSV +S    +V +I   
Sbjct: 235  GEVKALYEKEILKRVSGATGVSAQGAQ---NTGKTNKTGPVIQSVGSSQKVAEVRKI--- 288

Query: 938  HPKGNNIREVAAETSMEIEINSMR--SNGSDADSGSKT---AKTIPKNSKQELRPSVQXX 774
             P   + R+V   T+ME+E   M+  S GSDA +   T   AK   KNSKQEL+ SVQ  
Sbjct: 289  -PAKESSRDVPG-TAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQEL 346

Query: 773  XXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALS 594
                         KNI PP SAYQFE+SWRGLSGD DLQT LLKVTSP+ LP IFKNALS
Sbjct: 347  AARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALS 406

Query: 593  APILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSK 414
            AP+L+DI+RC+ATF +EDM L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF K
Sbjct: 407  APMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCK 466

Query: 413  GTTDYAEILGNLRSRYG 363
            G  +++  LG LR +YG
Sbjct: 467  GAEEHSATLGALRLKYG 483


>emb|CDP18255.1| unnamed protein product [Coffea canephora]
          Length = 466

 Score =  509 bits (1310), Expect = e-173
 Identities = 275/482 (57%), Positives = 340/482 (70%), Gaps = 11/482 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSR-NNAS 1602
            M+ VPSKHSRD  QDFEGLLNNLQDWELSFKDKDKKL+  + GK K D   Q     NA+
Sbjct: 1    MSRVPSKHSRDQAQDFEGLLNNLQDWELSFKDKDKKLKSQSRGKEKADLLAQRHNVANAN 60

Query: 1601 RFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1422
            + S S+RV  +  + K  + D     ++YDYL+ Y+A+ +LSS   ++ES VDANSEKEL
Sbjct: 61   QLSSSSRVGERHAVEKNANEDIGDAAKKYDYLRNYDAMRQLSSSFMTEESSVDANSEKEL 120

Query: 1421 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1242
            GNE+FK KKFNEAIDCYSRSIAL                   F+EAE+DCTEALNLDDRY
Sbjct: 121  GNEYFKHKKFNEAIDCYSRSIAL-------------------FEEAESDCTEALNLDDRY 161

Query: 1241 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1062
            IKAYSRRSTARKELGKLKE++DDAEFALRLEPQNQEIKKQYA+ KSLL K+ILK+ S A 
Sbjct: 162  IKAYSRRSTARKELGKLKEAYDDAEFALRLEPQNQEIKKQYAEAKSLLDKEILKKVSRAS 221

Query: 1061 AGSVEGA-RPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEI 885
              SV+G  + G S+V+ NK V  ++ VS+   +G VAE+ +DH KGNN  E+  +T+M +
Sbjct: 222  TSSVQGLQKAGKSKVETNKAVNGVKPVSSDFNSGMVAEVQDDHTKGNN-GEIPLKTAMRL 280

Query: 884  EINSMRSNGSDADSGSKTA---------KTIPKNSKQELRPSVQXXXXXXXXXXXXXXXK 732
            +  SM+S   + ++  ++A         K    N K EL+ SVQ               K
Sbjct: 281  DGTSMKSKDQNGNASHESALQNTALETTKRSSTNGKHELKTSVQELAARAATLAKAEAAK 340

Query: 731  NIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATF 552
             I PP SAYQFE+SWRGLSGD  LQ +LLK T P +LP IFKNALSA +L+DI+ CIATF
Sbjct: 341  IIAPPNSAYQFEVSWRGLSGDRSLQAQLLKATPPTSLPQIFKNALSASLLMDILGCIATF 400

Query: 551  FMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRS 372
            F+ED+ L V++L+NLTKIPRFDMI+MCL SADKAD+F++W+EVFS+ T +YAEIL  LRS
Sbjct: 401  FIEDVDLAVKFLENLTKIPRFDMIVMCLSSADKADLFRMWNEVFSQTTPEYAEILSRLRS 460

Query: 371  RY 366
            RY
Sbjct: 461  RY 462


>ref|XP_009767331.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X5
            [Nicotiana sylvestris]
          Length = 449

 Score =  508 bits (1308), Expect = e-173
 Identities = 281/461 (60%), Positives = 333/461 (72%), Gaps = 5/461 (1%)
 Frame = -1

Query: 1730 EGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASRFSDSARVNGKQTMGKT 1551
            +GLLNNLQDWELS KDKDKK++  A GK KL    +   ++ S      +VNG Q +GK 
Sbjct: 2    QGLLNNLQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSELPTGPQVNGTQRVGK- 56

Query: 1550 PSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELGNEFFKQKKFNEAIDCY 1371
             S+  +     YDY K+Y   S LSS + S+ES +DANSEKELGNEFFKQKKF EAIDCY
Sbjct: 57   -STLISGAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCY 115

Query: 1370 SRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKL 1191
            SRSIALSPTAVAYANRAM+Y+K+KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKL
Sbjct: 116  SRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKL 175

Query: 1190 KESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALAGSVEGARPGTSEVDKN 1011
            KES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR SGA   S +GA+   +    N
Sbjct: 176  KESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQ---NTGKTN 232

Query: 1010 KFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEINSMR--SNGSDADSGS 837
            K  P +QSV +S    +V +I    P   + R+V   T+ME+E   M+  S GSDA +  
Sbjct: 233  KTGPVIQSVGSSQKVAEVRKI----PAKESSRDVPG-TAMEVEDTHMQINSKGSDASATV 287

Query: 836  KT---AKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDH 666
             T   AK   KNSKQEL+ SVQ               KNI PP SAYQFE+SWRGLSGD 
Sbjct: 288  PTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDR 347

Query: 665  DLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFD 486
            DLQT LLKVTSP+ LP IFKNALSAP+L+DI+RC+ATF +EDM L + YL+NLTK+PRFD
Sbjct: 348  DLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFD 407

Query: 485  MIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            MIIMCL S DKA++ KIWDEVF KG  +++  LG LR +YG
Sbjct: 408  MIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYG 448


>ref|XP_009611911.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Nicotiana tomentosiformis]
          Length = 455

 Score =  506 bits (1302), Expect = e-172
 Identities = 286/477 (59%), Positives = 333/477 (69%), Gaps = 5/477 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPSKHSRD            QDWELS KDKDKK++  A GK KL    +   ++ S 
Sbjct: 1    MARVPSKHSRD----------QFQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSE 46

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                 +V G Q +GK+ S   +S    YDY K+Y   S LSS + S+ES +DANSEKELG
Sbjct: 47   LPTGPQVTGTQRVGKSTSI--SSAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELG 104

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF EAI CYSRSIALSPTAVAYANRAM+Y+KIKRFQEAENDCTEALNLDDRYI
Sbjct: 105  NEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYI 164

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR S A  
Sbjct: 165  KAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAATG 224

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
             S +GA+        NK  P +QSVS SS   KVAE+ +   K NN R+V   T+ME+E 
Sbjct: 225  VSAQGAQ---KTGKTNKTGPVIQSVSGSSQ--KVAEVRKIPAKENN-RDVPG-TAMEVED 277

Query: 878  NSMRSNGSDADSGS-----KTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPK 714
              M+ N  D+D+ +       AK   KNSKQEL+ SVQ               KNI PP 
Sbjct: 278  THMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPN 337

Query: 713  SAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMA 534
            SAYQFE+SWRGLSGD +LQT LLKVTSPA LP IFKNALSAP+L+DI+RC+ATF +EDM 
Sbjct: 338  SAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMD 397

Query: 533  LGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF KG  ++   L  LR  YG
Sbjct: 398  LAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYG 454


>ref|XP_009767326.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4
            [Nicotiana sylvestris]
          Length = 454

 Score =  504 bits (1299), Expect = e-171
 Identities = 283/477 (59%), Positives = 335/477 (70%), Gaps = 5/477 (1%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VP KH+RD            QDWELS KDKDKK++  A GK KL    +   ++ S 
Sbjct: 1    MARVPGKHTRD----------QFQDWELSLKDKDKKMKSQARGKEKL----REDWSHTSE 46

Query: 1598 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1419
                 +VNG Q +GK  S+  +     YDY K+Y   S LSS + S+ES +DANSEKELG
Sbjct: 47   LPTGPQVNGTQRVGK--STLISGAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELG 104

Query: 1418 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1239
            NEFFKQKKF EAIDCYSRSIALSPTAVAYANRAM+Y+K+KRFQEAENDCTEALNLDDRYI
Sbjct: 105  NEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRYI 164

Query: 1238 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1059
            KAYSRRSTARKELGKLKES +DAEFA RLEPQNQEIKKQY + K+L +K+ILKR SGA  
Sbjct: 165  KAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGATG 224

Query: 1058 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 879
             S +GA+   +    NK  P +QSV +S    +V +I    P   + R+V   T+ME+E 
Sbjct: 225  VSAQGAQ---NTGKTNKTGPVIQSVGSSQKVAEVRKI----PAKESSRDVPG-TAMEVED 276

Query: 878  NSMR--SNGSDADSGSKT---AKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPK 714
              M+  S GSDA +   T   AK   KNSKQEL+ SVQ               KNI PP 
Sbjct: 277  THMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPN 336

Query: 713  SAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMA 534
            SAYQFE+SWRGLSGD DLQT LLKVTSP+ LP IFKNALSAP+L+DI+RC+ATF +EDM 
Sbjct: 337  SAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMD 396

Query: 533  LGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLRSRYG 363
            L + YL+NLTK+PRFDMIIMCL S DKA++ KIWDEVF KG  +++  LG LR +YG
Sbjct: 397  LAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYG 453


>ref|XP_015056193.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Solanum
            pennellii]
          Length = 470

 Score =  502 bits (1293), Expect = e-170
 Identities = 282/487 (57%), Positives = 342/487 (70%), Gaps = 12/487 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPS HSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       + + SR
Sbjct: 1    MARVPSNHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAGGKETL-------KEDWSR 53

Query: 1598 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1428
             S+   S + NG Q +GK+ S  N +    Y Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSEPLTSPQANGTQQVGKSTSIRNAAG--PYSYSKTYNPISHLSSKLISEESNINANSEK 111

Query: 1427 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1248
            ELGNE FKQKKFNEAIDCY+RSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 112  ELGNECFKQKKFNEAIDCYARSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 171

Query: 1247 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1068
            RYIKAYSRRST+RKELGKLKES +DAE ALRLEP+N EIKKQY + K+L +K+ILKR SG
Sbjct: 172  RYIKAYSRRSTSRKELGKLKESIEDAEVALRLEPRNPEIKKQYGEVKALYEKEILKRVSG 231

Query: 1067 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 888
            A   S +G +     +   K  P +QSVS+SS   KVAE+    P   NIR+V    + +
Sbjct: 232  ATDVSAQGPQKSGKTI---KIGPVIQSVSSSSQ--KVAEV-RTIPAKENIRDVPG--TAK 283

Query: 887  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 735
            +E   M+ N  D+D+            T+K   K SK+EL  SVQ               
Sbjct: 284  VEDTHMQINNKDSDASPTVPTLNLAFGTSKKTHKISKKELEESVQELAARAAGLAKTEAA 343

Query: 734  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 555
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RCIAT
Sbjct: 344  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIAT 403

Query: 554  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 375
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F KG  +++  LG LR
Sbjct: 404  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKGAEEHSATLGALR 463

Query: 374  SRYGTKQ 354
              YG KQ
Sbjct: 464  VSYGLKQ 470


>ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Solanum
            lycopersicum]
          Length = 470

 Score =  498 bits (1282), Expect = e-168
 Identities = 282/487 (57%), Positives = 341/487 (70%), Gaps = 12/487 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPS HSRD  QD +GL NNLQDWEL+ K KDKK++  A GK  L       + + SR
Sbjct: 1    MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETL-------KEDWSR 53

Query: 1598 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1428
             S+   S + NG Q +GK+ S  N +    Y Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSEPLTSPQANGTQQVGKSTSIRNAAG--PYSYSKNYNPISHLSSELISEESNINANSEK 111

Query: 1427 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1248
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 112  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 171

Query: 1247 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1068
            RYIKAYSRRST+RKELGKLKES +DAEFAL LEP+N EIKKQY + K+L +K+ILKR SG
Sbjct: 172  RYIKAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSG 231

Query: 1067 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 888
            A   S +G +     +   K  P +QSVS+SS   KVAE+     K NN R+V    + +
Sbjct: 232  ATDVSAQGPQKSGKTI---KIGPVIQSVSSSSQ--KVAEVRTIPAKENN-RDVLG--TAK 283

Query: 887  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 735
            +E   M+ +  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 284  VEDTHMQISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 343

Query: 734  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 555
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RCIAT
Sbjct: 344  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIAT 403

Query: 554  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 375
            FF+EDM L + YL++LTK+PRFDMIIMCL SADK+++ KIW+E+F K   +++  LG LR
Sbjct: 404  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEIFCKVAEEHSATLGALR 463

Query: 374  SRYGTKQ 354
              YG KQ
Sbjct: 464  VSYGLKQ 470


>ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Solanum
            tuberosum]
          Length = 468

 Score =  497 bits (1280), Expect = e-168
 Identities = 284/486 (58%), Positives = 342/486 (70%), Gaps = 12/486 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPSKHSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       R + SR
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL-------REDWSR 53

Query: 1598 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1428
             S+   S +VNG + +GK+ S    S    Y+Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSELLTSPQVNGTR-VGKSTSI--RSAAGPYNYSKNYNPISHLSSELISEESNINANSEK 110

Query: 1427 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1248
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 111  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 170

Query: 1247 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1068
            RYIKAYSRRST+RKELGKLKES +DAEFALRLEPQN EIKKQY + K+L +K+I KR SG
Sbjct: 171  RYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSG 230

Query: 1067 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 888
            A   S + A+     +   K  P +QSVS+SS   K+AE+     K NN R+V    + +
Sbjct: 231  ATDVSAQRAQKSGKTI---KSGPVIQSVSSSSQ--KMAEVWTIPAKENN-RDVPG--TAK 282

Query: 887  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 735
            +E   M+ N  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 283  VEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 342

Query: 734  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 555
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RC+AT
Sbjct: 343  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVAT 402

Query: 554  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 375
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F K   +++  LG LR
Sbjct: 403  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALR 462

Query: 374  SRYGTK 357
              YG K
Sbjct: 463  VPYGLK 468


>ref|XP_015056194.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Solanum
            pennellii]
          Length = 469

 Score =  497 bits (1279), Expect = e-168
 Identities = 282/487 (57%), Positives = 341/487 (70%), Gaps = 12/487 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPS HSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       + + SR
Sbjct: 1    MARVPSNHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAGGKETL-------KEDWSR 53

Query: 1598 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1428
             S+   S + NG Q +GK+ S  N +    Y Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSEPLTSPQANGTQQVGKSTSIRNAAG--PYSYSKTYNPISHLSSKLISEESNINANSEK 111

Query: 1427 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1248
            ELGNE FKQKKFNEAIDCY+RSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 112  ELGNECFKQKKFNEAIDCYARSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 171

Query: 1247 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1068
            RYIKAYSRRST+RKELGKLKES +DAE ALRLEP+N EIKKQY + K+L +K ILKR SG
Sbjct: 172  RYIKAYSRRSTSRKELGKLKESIEDAEVALRLEPRNPEIKKQYGEVKALYEK-ILKRVSG 230

Query: 1067 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 888
            A   S +G +     +   K  P +QSVS+SS   KVAE+    P   NIR+V    + +
Sbjct: 231  ATDVSAQGPQKSGKTI---KIGPVIQSVSSSSQ--KVAEV-RTIPAKENIRDVPG--TAK 282

Query: 887  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 735
            +E   M+ N  D+D+            T+K   K SK+EL  SVQ               
Sbjct: 283  VEDTHMQINNKDSDASPTVPTLNLAFGTSKKTHKISKKELEESVQELAARAAGLAKTEAA 342

Query: 734  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 555
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RCIAT
Sbjct: 343  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIAT 402

Query: 554  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 375
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F KG  +++  LG LR
Sbjct: 403  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKGAEEHSATLGALR 462

Query: 374  SRYGTKQ 354
              YG KQ
Sbjct: 463  VSYGLKQ 469


>ref|XP_010327507.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Solanum
            lycopersicum]
          Length = 469

 Score =  493 bits (1268), Expect = e-166
 Identities = 282/487 (57%), Positives = 340/487 (69%), Gaps = 12/487 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPS HSRD  QD +GL NNLQDWEL+ K KDKK++  A GK  L       + + SR
Sbjct: 1    MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETL-------KEDWSR 53

Query: 1598 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1428
             S+   S + NG Q +GK+ S  N +    Y Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSEPLTSPQANGTQQVGKSTSIRNAAG--PYSYSKNYNPISHLSSELISEESNINANSEK 111

Query: 1427 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1248
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 112  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 171

Query: 1247 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1068
            RYIKAYSRRST+RKELGKLKES +DAEFAL LEP+N EIKKQY + K+L +K ILKR SG
Sbjct: 172  RYIKAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEK-ILKRVSG 230

Query: 1067 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 888
            A   S +G +     +   K  P +QSVS+SS   KVAE+     K NN R+V    + +
Sbjct: 231  ATDVSAQGPQKSGKTI---KIGPVIQSVSSSSQ--KVAEVRTIPAKENN-RDVLG--TAK 282

Query: 887  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 735
            +E   M+ +  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 283  VEDTHMQISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 342

Query: 734  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 555
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RCIAT
Sbjct: 343  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIAT 402

Query: 554  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 375
            FF+EDM L + YL++LTK+PRFDMIIMCL SADK+++ KIW+E+F K   +++  LG LR
Sbjct: 403  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEIFCKVAEEHSATLGALR 462

Query: 374  SRYGTKQ 354
              YG KQ
Sbjct: 463  VSYGLKQ 469


>ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Solanum
            tuberosum]
          Length = 467

 Score =  492 bits (1266), Expect = e-166
 Identities = 284/486 (58%), Positives = 341/486 (70%), Gaps = 12/486 (2%)
 Frame = -1

Query: 1778 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1599
            MA VPSKHSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       R + SR
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL-------REDWSR 53

Query: 1598 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1428
             S+   S +VNG + +GK+ S    S    Y+Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSELLTSPQVNGTR-VGKSTSI--RSAAGPYNYSKNYNPISHLSSELISEESNINANSEK 110

Query: 1427 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1248
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 111  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 170

Query: 1247 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1068
            RYIKAYSRRST+RKELGKLKES +DAEFALRLEPQN EIKKQY + K+L +K I KR SG
Sbjct: 171  RYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEK-IRKRVSG 229

Query: 1067 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 888
            A   S + A+     +   K  P +QSVS+SS   K+AE+     K NN R+V    + +
Sbjct: 230  ATDVSAQRAQKSGKTI---KSGPVIQSVSSSSQ--KMAEVWTIPAKENN-RDVPG--TAK 281

Query: 887  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 735
            +E   M+ N  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 282  VEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 341

Query: 734  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 555
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RC+AT
Sbjct: 342  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVAT 401

Query: 554  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 375
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F K   +++  LG LR
Sbjct: 402  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALR 461

Query: 374  SRYGTK 357
              YG K
Sbjct: 462  VPYGLK 467