BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00021697
         (1516 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   466   e-149
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   432   e-144
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   446   e-143
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   449   e-141
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   424   e-141
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   446   e-140
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   445   e-140
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   445   e-139
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   445   e-139
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   432   e-138
gb|KYP34165.1| Copia protein [Cajanus cajan]                          412   e-136
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   412   e-136
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   431   e-134
gb|KYP63857.1| Retrovirus-related Pol polyprotein from transposo...   406   e-134
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   430   e-134
gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposo...   407   e-134
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   405   e-133
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo...   403   e-132
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo...   400   e-131
gb|KYP35708.1| Copia protein [Cajanus cajan]                          398   e-131

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  466 bits (1199), Expect = e-149
 Identities = 247/504 (49%), Positives = 325/504 (64%), Gaps = 17/504 (3%)
 Frame = +3

Query: 27   YGEGVLYST*KWHMDSL*AAL**KTYWMQVGVQSEK---GCIWLY------------Y*A 161
            + E + +   K  MD    AL     W  V + + +   GC W++            Y A
Sbjct: 750  FQEAISHPKWKEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRWVFKLKRNPDGSVSRYKA 809

Query: 162  QG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKL 341
            +  A G  Q+ G D+ ETFSPV+KP             SW I+Q+D++NAFLNG++  ++
Sbjct: 810  RLVAKGYSQVPGFDFYETFSPVVKPTTIRVVLAIAVSQSWCIRQLDVNNAFLNGELQEEV 869

Query: 342  YMEQSPGFEDVRGKH--LVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFY 515
            YM+Q PGF+    +   LVCKLHK+LYGLKQA RAW  KL   L   GF  ++ D SLF 
Sbjct: 870  YMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFV 929

Query: 516  KNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSG 695
            +  +   + VL+YVDDI++TGS+S             FSLKDLG L+YFLGI+V  T  G
Sbjct: 930  RFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELSYFLGIEVKKTADG 989

Query: 696  GLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYAT 875
            GL L+Q KYI+ +L +  M  AK + +PM+S   LS   G+P+ +   YRS+VGALQY T
Sbjct: 990  GLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKLSAGMGDPIDNVFEYRSVVGALQYIT 1049

Query: 876  VTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNTHNLTAFADAG 1055
            +TRP+IA+SVNKV Q+MQ PL THWKAVKRILRYL  T D G+    S T NL  F DA 
Sbjct: 1050 ITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILRYLNGTTDLGIVLKPSETMNLVGFCDAD 1109

Query: 1056 WASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLG 1235
            W SD+D RR TSG+CV+LG +LVSWS+KK HT S SSTE EY SLA++T +++WL+SLL 
Sbjct: 1110 WGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHTTSRSSTEAEYRSLASLTSEMLWLQSLLS 1169

Query: 1236 ELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKID 1415
            EL+ +      IW DN+  V+LS NP+LHSRTKH+ELD++F+R+KV  +++ V HVP  D
Sbjct: 1170 ELQTKMTMVPVIWCDNISTVSLSANPVLHSRTKHMELDLYFVREKVMERKLVVNHVPTED 1229

Query: 1416 QVADLFTKPISGQFFTKLRNKLNV 1487
            QVAD+FTKP+S +FF KLR KL V
Sbjct: 1230 QVADVFTKPLSFRFFDKLREKLTV 1253



 Score = 77.4 bits (189), Expect = 2e-11
 Identities = 32/59 (54%), Positives = 45/59 (76%)
 Frame = +1

Query: 10  PVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
           P WK AM++EF  L+KN TW+L  LP +R  +GC+WVFK+K++  G + ++KARLVAKG
Sbjct: 757 PKWKEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKG 815


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  432 bits (1112), Expect = e-144
 Identities = 231/486 (47%), Positives = 311/486 (63%), Gaps = 21/486 (4%)
 Frame = +3

Query: 105  WMQVGVQSEK---GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPX 239
            W  V +   K   GC W++            Y A+  A G  Q  G DY ETFSPV+KP 
Sbjct: 54   WTLVSLPPNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPV 113

Query: 240  XXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYG 419
                       H W IQQ+D++NAFLNG++  ++YM Q PGFE    K LVCKLHK++YG
Sbjct: 114  TIRLILTLALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFES-SDKTLVCKLHKAIYG 172

Query: 420  LKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXX 599
            LKQA RAW  KL T L  L F +S+ D SLF  + D   + +L+YVDDI+ITG+NSS   
Sbjct: 173  LKQAPRAWFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQ 232

Query: 600  XXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSP 779
                     FSLKDLG L++FLGI+V     G L L Q+KYI+ +L R +M+++  ISSP
Sbjct: 233  NIIAQLNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSP 292

Query: 780  MVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAV 959
            MVS   LS++  E   D  LYRS+VGALQYAT+TRP+I++SVNKV Q+M +PL  HW AV
Sbjct: 293  MVSGCKLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAV 352

Query: 960  KRILRYLTATIDYGLYFIASNTH---NLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSW 1130
            KRILRYL  T+  GL+   + ++   ++ A+ DA WASD D RR TSG  +++G NL+SW
Sbjct: 353  KRILRYLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISW 412

Query: 1131 SAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNN 1310
             +KK   V+ SS E EY SLA  T +V+W+++LL EL      P  ++ DN+  VAL++N
Sbjct: 413  WSKKQTVVARSSAEAEYRSLALATAEVLWIQTLLSELHVSHHTP-VVYCDNMSTVALAHN 471

Query: 1311 PILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVI 1490
            P+LH+RTKH+ELD+ F+R+KV++  + V HVP IDQ AD+ TK +S   F +LR KL ++
Sbjct: 472  PVLHARTKHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLV 531

Query: 1491 ---PKP 1499
               P+P
Sbjct: 532  DSSPQP 537



 Score = 78.6 bits (192), Expect = 6e-12
 Identities = 33/57 (57%), Positives = 46/57 (80%)
 Frame = +1

Query: 16  WKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
           W AAM++E++ LL NGTWTL  LP ++  IGCKWVF++K+++ G + K+KARLVAKG
Sbjct: 37  WLAAMKQEYNALLNNGTWTLVSLPPNKTAIGCKWVFRIKENSDGTVNKYKARLVAKG 93


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  446 bits (1147), Expect = e-143
 Identities = 238/470 (50%), Positives = 310/470 (65%), Gaps = 15/470 (3%)
 Frame = +3

Query: 135  GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHS 278
            GC W++            Y A+  A G  Q  G DY ETFSPVIKP            H 
Sbjct: 603  GCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHR 662

Query: 279  WPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLG 458
            WPIQQ+D++NAFLNG ++ ++YM+Q PGFE    K+LVCKLHK++YGLKQA RAW  KL 
Sbjct: 663  WPIQQLDVNNAFLNGTLEEEVYMQQPPGFE-ASDKNLVCKLHKAIYGLKQAPRAWFDKLK 721

Query: 459  TVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLK 638
            + L+ L F  S+ D SLF  +     + +L+YVDDI+ITG+NSS            FSLK
Sbjct: 722  STLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLK 781

Query: 639  DLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGE 818
            DLG L++FLGI+V     G L L Q+KYI+ +L R DM+ +K ISSPM+S   LSK   E
Sbjct: 782  DLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSE 841

Query: 819  PLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDY 998
               D +LYRS+VGALQYAT+TRP+I++SVNKV Q+M  PL+ HW AVKRILRYL  T  +
Sbjct: 842  DFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSW 901

Query: 999  GLYF---IASNTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSST 1169
            GL      +S++ ++ A+ DA WASD D RR TSG  ++LG NLVSW +KK   V+ SST
Sbjct: 902  GLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSST 961

Query: 1170 ETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELD 1349
            E EY SLA  T +V W+++LL ELK     P  I+ DNL  VAL++NP+LH+RTKH+ELD
Sbjct: 962  EAEYRSLALATTEVTWIQTLLSELKVTHSTP-IIFCDNLSTVALAHNPVLHARTKHMELD 1020

Query: 1350 MHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVIPKP 1499
            + F+R+KV++K + V HVP IDQ AD+ TK +S   F +LR+KL V+  P
Sbjct: 1021 LFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKLQVVESP 1070



 Score = 77.8 bits (190), Expect = 2e-11
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = +1

Query: 1   LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
           L  P W AAM+ E++ LL N TW+L  LP  R  IGCKWVF+VK++ +G + K+KARLVA
Sbjct: 568 LSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVA 627

Query: 181 KG 186
           KG
Sbjct: 628 KG 629


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  449 bits (1156), Expect = e-141
 Identities = 229/463 (49%), Positives = 306/463 (66%), Gaps = 12/463 (2%)
 Frame = +3

Query: 135  GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHS 278
            GC W+Y            Y A+  A G  Q  G D+TETFSPV+KP             +
Sbjct: 979  GCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRN 1038

Query: 279  WPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLG 458
            W I+Q+D++NAFLNGD+  +++M+Q  GF D +  +LVC+LHK+LYGLKQA RAW  KL 
Sbjct: 1039 WAIKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLH 1098

Query: 459  TVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLK 638
              L+S GF+ ++ D SLF +        VL+YVDDIL+ GS+++A           FSLK
Sbjct: 1099 RALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLK 1158

Query: 639  DLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGE 818
            DLG ++YFLGIQVS T++G L L+Q KYI+ +L +  M H K   +P+ +   L   DG+
Sbjct: 1159 DLGEVHYFLGIQVSHTNNG-LHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGD 1217

Query: 819  PLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDY 998
            P++D   YRS VGALQY T+TRP++++SVNKV Q+MQ+P   HWK VKRILRYL  T+ +
Sbjct: 1218 PVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQH 1277

Query: 999  GLYFIASNTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETE 1178
            GL+   S+  +L  F DA WASDLD RR TSG+CV+LG NL+SW +KK H VS SS E E
Sbjct: 1278 GLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIE 1337

Query: 1179 YISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHF 1358
            Y SLA +  ++ WLRSLL EL+    KP  +W DNL  V LS NP+LH+RTKH+ELD++F
Sbjct: 1338 YRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIELDLYF 1397

Query: 1359 IRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNV 1487
            +R+KV  KE+ VRHVP  DQ+AD+ TK +S   F + R+KL +
Sbjct: 1398 VREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRI 1440



 Score = 72.4 bits (176), Expect = 9e-10
 Identities = 33/62 (53%), Positives = 42/62 (67%)
 Frame = +1

Query: 1    LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
            LQ   WK AM  E+  L +N TW+L  LP  R+ IGCKWV+K K++  G + K+KARLVA
Sbjct: 944  LQQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVA 1003

Query: 181  KG 186
            KG
Sbjct: 1004 KG 1005


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  424 bits (1091), Expect = e-141
 Identities = 232/463 (50%), Positives = 299/463 (64%), Gaps = 3/463 (0%)
 Frame = +3

Query: 120  VQSEKGCIWLYY*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQID 299
            VQ  K C+         A G  Q  G DY ETFSPVIKP            H WPIQQ+D
Sbjct: 82   VQKYKACLV--------AKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHHWPIQQLD 133

Query: 300  IDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLG 479
            ++NAFLNG ++ ++YM Q PGFE    K LVCKLHK++YGLKQA RAW  KL + L+   
Sbjct: 134  VNNAFLNGTLEEEVYMTQPPGFE-ASDKCLVCKLHKAIYGLKQAPRAWFEKLKSTLLQFH 192

Query: 480  FLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNY 659
            F  S+ D SLF  +     + +L+YVDDI+IT +NSS            FSLKDLG L+Y
Sbjct: 193  FQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTLVSQLHSVFSLKDLGDLDY 252

Query: 660  FLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPAL 839
            FLGI+V     G L L Q+KYI+ +L R DM+  K ISSPM+    LSK+  E   D +L
Sbjct: 253  FLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDSKLSKAGSEDFLDASL 312

Query: 840  YRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYF--- 1010
            YRS+VGALQYAT+TR +I++SVNKV Q+M  PL+ H  AVKRILRYL  T  +GL+    
Sbjct: 313  YRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKRILRYLKGTTSWGLHLQPA 372

Query: 1011 IASNTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISL 1190
             +S++ ++ A+ DA WASDLD RR T G  ++L  NLVSW +KK   V+ SST+ EY SL
Sbjct: 373  SSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWSKKKTVVARSSTKAEYRSL 432

Query: 1191 ANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDK 1370
            A  T +V W+++LL ELK     P  I+ DNL  VAL++NPILH+RTKH+ELD+ F+R+K
Sbjct: 433  ALATTEVTWIQTLLSELKVNHSTP-IIFCDNLSTVALAHNPILHARTKHMELDLFFVREK 491

Query: 1371 VSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVIPKP 1499
            V++K + V HVP IDQ AD+ TK +S   F  LR+KL V+  P
Sbjct: 492  VAAKCLQVVHVPAIDQCADVLTKALSPSRFCVLRSKLQVVESP 534



 Score = 76.6 bits (187), Expect = 2e-11
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = +1

Query: 1   LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
           L  P W AAM+ E++ LL NGTW+L  LP  R  IGCKWVF+VK++ +G + K+KA LVA
Sbjct: 32  LSNPTWTAAMQTEYNALLHNGTWSLVPLPPHRTAIGCKWVFRVKENPNGTVQKYKACLVA 91

Query: 181 KG 186
           KG
Sbjct: 92  KG 93


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  446 bits (1147), Expect = e-140
 Identities = 238/470 (50%), Positives = 310/470 (65%), Gaps = 15/470 (3%)
 Frame = +3

Query: 135  GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHS 278
            GC W++            Y A+  A G  Q  G DY ETFSPVIKP            H 
Sbjct: 938  GCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHR 997

Query: 279  WPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLG 458
            WPIQQ+D++NAFLNG ++ ++YM+Q PGFE    K+LVCKLHK++YGLKQA RAW  KL 
Sbjct: 998  WPIQQLDVNNAFLNGTLEEEVYMQQPPGFE-ASDKNLVCKLHKAIYGLKQAPRAWFDKLK 1056

Query: 459  TVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLK 638
            + L+ L F  S+ D SLF  +     + +L+YVDDI+ITG+NSS            FSLK
Sbjct: 1057 STLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLK 1116

Query: 639  DLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGE 818
            DLG L++FLGI+V     G L L Q+KYI+ +L R DM+ +K ISSPM+S   LSK   E
Sbjct: 1117 DLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSE 1176

Query: 819  PLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDY 998
               D +LYRS+VGALQYAT+TRP+I++SVNKV Q+M  PL+ HW AVKRILRYL  T  +
Sbjct: 1177 DFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSW 1236

Query: 999  GLYF---IASNTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSST 1169
            GL      +S++ ++ A+ DA WASD D RR TSG  ++LG NLVSW +KK   V+ SST
Sbjct: 1237 GLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSST 1296

Query: 1170 ETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELD 1349
            E EY SLA  T +V W+++LL ELK     P  I+ DNL  VAL++NP+LH+RTKH+ELD
Sbjct: 1297 EAEYRSLALATTEVTWIQTLLSELKVTHSTP-IIFCDNLSTVALAHNPVLHARTKHMELD 1355

Query: 1350 MHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVIPKP 1499
            + F+R+KV++K + V HVP IDQ AD+ TK +S   F +LR+KL V+  P
Sbjct: 1356 LFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKLQVVESP 1405



 Score = 77.8 bits (190), Expect = 2e-11
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = +1

Query: 1    LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
            L  P W AAM+ E++ LL N TW+L  LP  R  IGCKWVF+VK++ +G + K+KARLVA
Sbjct: 903  LSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVA 962

Query: 181  KG 186
            KG
Sbjct: 963  KG 964


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  445 bits (1145), Expect = e-140
 Identities = 238/466 (51%), Positives = 309/466 (66%), Gaps = 15/466 (3%)
 Frame = +3

Query: 135  GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHS 278
            GC W++            Y A+  A G  Q  G+D++ETFSPV+KP              
Sbjct: 935  GCKWVFRLKENPDGSINKYKARLVAKGFHQQPGVDFSETFSPVVKPVTIRIVLSLAVTFQ 994

Query: 279  WPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLG 458
            WP++Q+DI+NAFLNG ++  +YM Q PGF +   KHLVCKLHKSLYGLKQA RAW  +L 
Sbjct: 995  WPLRQLDINNAFLNGMLEEDIYMSQPPGFIEPNSKHLVCKLHKSLYGLKQAPRAWFDRLT 1054

Query: 459  TVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLK 638
            +VL+ LGF  S+ D SLF  +     V +LIYVDDI++TG++SS            FSLK
Sbjct: 1055 SVLLKLGFHKSKCDPSLFIFSTPSAIVYMLIYVDDIILTGNSSSLMQQFINHLHATFSLK 1114

Query: 639  DLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGE 818
            DLGTL+YFLGI+V    +G L L+Q KYI  +L +  M+ +KGIS+PM+    L+K+ G 
Sbjct: 1115 DLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLLTKVKMEDSKGISTPMIGGQQLAKT-GT 1173

Query: 819  PLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDY 998
               DP LYRS+VGALQYAT+TRP+IA+SVNKVSQ+M  P+  HWK VKRILRYL  T+ +
Sbjct: 1174 LFNDPTLYRSVVGALQYATITRPEIAFSVNKVSQFMCSPMEEHWKVVKRILRYLKGTLKH 1233

Query: 999  GLYFI---ASNTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSST 1169
            GL F    +S++ NLTAF DA WA+D + RR TS  C+YLG NLVSW +KK   V+ SST
Sbjct: 1234 GLVFTPARSSSSFNLTAFTDADWAADPNDRRSTSAACIYLGPNLVSWWSKKQLLVARSST 1293

Query: 1170 ETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELD 1349
            E EY +LA    +V+W++SLL ELK     P  +  DN   VALS+NP+LHSR+KH+ELD
Sbjct: 1294 EAEYRALAQAVTEVLWIQSLLQELKIRFNTPMVL-CDNQSTVALSHNPVLHSRSKHMELD 1352

Query: 1350 MHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNV 1487
            + F+R+KV SK + V H+P   Q ADL TK +S + F  LR+KLNV
Sbjct: 1353 IFFVREKVISKALVVSHIPSQHQYADLLTKALSPKRFLSLRSKLNV 1398



 Score = 73.2 bits (178), Expect = 5e-10
 Identities = 34/59 (57%), Positives = 43/59 (72%)
 Frame = +1

Query: 10   PVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
            P W +AM+ E + L  N TWTL +LP  RK IGCKWVF++K++  G I K+KARLVAKG
Sbjct: 903  PHWLSAMQAELTALHDNHTWTLVDLPPGRKSIGCKWVFRLKENPDGSINKYKARLVAKG 961


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  445 bits (1145), Expect = e-139
 Identities = 235/437 (53%), Positives = 293/437 (67%), Gaps = 3/437 (0%)
 Frame = +3

Query: 186  QLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYMEQSPGF 365
            Q  G D+TETFSPVIKP              W +QQID++NAFLNG +  ++YM Q  GF
Sbjct: 983  QTAGFDFTETFSPVIKPITIRIILTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGF 1042

Query: 366  EDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDIGCVLV 545
            E    K LVCKLHKSLYGLKQA RAW  +L   L+ LGF+ S+ D SL     +  C  V
Sbjct: 1043 E-ASDKSLVCKLHKSLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYV 1101

Query: 546  LIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLNQAKYI 725
            LIYVDDILITGS               F+LK LG ++YFLGI+V    SG L LNQ KYI
Sbjct: 1102 LIYVDDILITGSAPHLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYI 1161

Query: 726  KYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPDIAYSV 905
            + +L +A M+ +  I SPMVS   LSK   + + DP LYRSIVGALQYAT+TRPDIA+SV
Sbjct: 1162 RDLLCKAHMEDSAPIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSV 1221

Query: 906  NKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNT---HNLTAFADAGWASDLDY 1076
            NKV Q+M  PL +HWKAVKRILRYL  T+ +GL    S T    +L A++DA WA+D D 
Sbjct: 1222 NKVCQFMAHPLESHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDD 1281

Query: 1077 RRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFEQR 1256
            RR TSG C+Y G NL+SW +KK   V+ SSTE EY S+AN T D++W++SLL EL+    
Sbjct: 1282 RRSTSGSCIYFGPNLISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFL 1341

Query: 1257 KPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADLFT 1436
             PT +  DNL AV+LS+NPILHS+TKH+ELD+HF+R+KV SK++++ HVP  DQ+AD  T
Sbjct: 1342 TPTLL-CDNLSAVSLSHNPILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLT 1400

Query: 1437 KPISGQFFTKLRNKLNV 1487
            KP+S    T +R KL V
Sbjct: 1401 KPLSPSQHTAIRTKLKV 1417



 Score = 76.6 bits (187), Expect = 4e-11
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = +1

Query: 1    LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
            L  P W  AM+ E+  L+ N TWTL  LP  RK IGCKW+F+VK++  G + K KARLVA
Sbjct: 919  LNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVA 978

Query: 181  KGSL 192
            KG L
Sbjct: 979  KGFL 982


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  445 bits (1145), Expect = e-139
 Identities = 235/437 (53%), Positives = 293/437 (67%), Gaps = 3/437 (0%)
 Frame = +3

Query: 186  QLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYMEQSPGF 365
            Q  G D+TETFSPVIKP              W +QQID++NAFLNG +  ++YM Q  GF
Sbjct: 983  QTAGFDFTETFSPVIKPITIRIILTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGF 1042

Query: 366  EDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDIGCVLV 545
            E    K LVCKLHKSLYGLKQA RAW  +L   L+ LGF+ S+ D SL     +  C  V
Sbjct: 1043 E-ASDKSLVCKLHKSLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYV 1101

Query: 546  LIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLNQAKYI 725
            LIYVDDILITGS               F+LK LG ++YFLGI+V    SG L LNQ KYI
Sbjct: 1102 LIYVDDILITGSAPHLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYI 1161

Query: 726  KYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPDIAYSV 905
            + +L +A M+ +  I SPMVS   LSK   + + DP LYRSIVGALQYAT+TRPDIA+SV
Sbjct: 1162 RDLLCKAHMEDSAPIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSV 1221

Query: 906  NKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNT---HNLTAFADAGWASDLDY 1076
            NKV Q+M  PL +HWKAVKRILRYL  T+ +GL    S T    +L A++DA WA+D D 
Sbjct: 1222 NKVCQFMAHPLESHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDD 1281

Query: 1077 RRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFEQR 1256
            RR TSG C+Y G NL+SW +KK   V+ SSTE EY S+AN T D++W++SLL EL+    
Sbjct: 1282 RRSTSGSCIYFGPNLISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFL 1341

Query: 1257 KPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADLFT 1436
             PT +  DNL AV+LS+NPILHS+TKH+ELD+HF+R+KV SK++++ HVP  DQ+AD  T
Sbjct: 1342 TPTLL-CDNLSAVSLSHNPILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLT 1400

Query: 1437 KPISGQFFTKLRNKLNV 1487
            KP+S    T +R KL V
Sbjct: 1401 KPLSPSQHTAIRTKLKV 1417



 Score = 76.6 bits (187), Expect = 4e-11
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = +1

Query: 1    LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
            L  P W  AM+ E+  L+ N TWTL  LP  RK IGCKW+F+VK++  G + K KARLVA
Sbjct: 919  LNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVA 978

Query: 181  KGSL 192
            KG L
Sbjct: 979  KGFL 982


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1007

 Score =  432 bits (1111), Expect = e-138
 Identities = 219/448 (48%), Positives = 296/448 (66%)
 Frame = +3

Query: 171  ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYME 350
            A G  Q  GLD++ETFSPV+KP            + WPI QIDI+N FL+GD+   +YM 
Sbjct: 555  AKGYNQKPGLDFSETFSPVVKPTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESVYMS 614

Query: 351  QSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDI 530
            Q PGF + + K  VCKL+K++YGLKQA R+W  KL   LI +GF  ++ D+SLF +    
Sbjct: 615  QPPGF-NTQHKDKVCKLNKAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVRFSKT 673

Query: 531  GCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLN 710
              +++LIYVDDI+ITG++              FSLKDLG+L+YFLG++V+ T  G L L 
Sbjct: 674  TTLMLLIYVDDIIITGNSKEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLT 733

Query: 711  QAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPD 890
            Q KY++ IL +A M  +    +PM++   L++++   + DP+ YRSIVGALQY T+TRPD
Sbjct: 734  QTKYLREILHKASMSDSTPQPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPD 793

Query: 891  IAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNTHNLTAFADAGWASDL 1070
            ++++VNKV QYM  P   HWKAVKRILRYL  TI +GL    +   NL  F D+ W +D 
Sbjct: 794  VSFAVNKVCQYMHCPQEHHWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDK 853

Query: 1071 DYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFE 1250
            D R+ TSGYCVYLG+NL+SWS++K  +VS S+TE EY S+A+V  D+IW++SLL EL+  
Sbjct: 854  DDRKSTSGYCVYLGSNLISWSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVP 913

Query: 1251 QRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADL 1430
            +  P  I+ DNL AV ++ NP+LHS+TKH ELD+HF+RDKV   E+ V H+P   QVAD 
Sbjct: 914  KSLP-RIYCDNLSAVLITANPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADT 972

Query: 1431 FTKPISGQFFTKLRNKLNVIPKPKFELR 1514
             TKP++ Q F   RNKL V       LR
Sbjct: 973  LTKPLAKQHFHHFRNKLMVTTLDTMSLR 1000



 Score = 69.7 bits (169), Expect = 6e-09
 Identities = 32/62 (51%), Positives = 40/62 (64%)
 Frame = +1

Query: 1   LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
           L  P W  AM+ E+  L+ N TW+L +LP   K IGCKW+FK K +  G   +HKARLVA
Sbjct: 496 LAKPEWLKAMKDEYQALVSNQTWSLVDLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVA 555

Query: 181 KG 186
           KG
Sbjct: 556 KG 557


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  412 bits (1060), Expect = e-136
 Identities = 216/470 (45%), Positives = 299/470 (63%)
 Frame = +3

Query: 105  WMQVGVQSEKGCIWLYY*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWP 284
            W+     S+ G I L + A+  A G  Q  GLDYT+TFSPV++P              WP
Sbjct: 66   WIFKNKYSQDGSI-LRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLAIAVSKGWP 124

Query: 285  IQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTV 464
            I QID+DNAFLNGD+  ++YM Q  GF      + VCKL K++YGLKQA RAW  KL   
Sbjct: 125  IHQIDVDNAFLNGDLKEEIYMLQPQGFHQ-GSPNTVCKLRKAIYGLKQAPRAWFQKLTLT 183

Query: 465  LISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDL 644
            L  LGF+ ++ D+SLF        + +L+YVDD++IT ++++A          +F LKDL
Sbjct: 184  LFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRGLIQALHQYFPLKDL 243

Query: 645  GTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPL 824
            G L++FLGI+V   ++GG+ L+Q +Y+  IL R +M +A+ + +PM     L+    E  
Sbjct: 244  GRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPASKLTNDGTEAC 303

Query: 825  KDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGL 1004
            +DP+ YRSIVGALQY T+TRPDIAY+VNK+ Q+M +PL  HWKA KR+LRYL  T+ +GL
Sbjct: 304  QDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATKRLLRYLKGTLHHGL 363

Query: 1005 YFIASNTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYI 1184
            ++       + A+ D+ WASD +  R TSG CVYLG+N+VSW AKK   VS SSTE E+ 
Sbjct: 364  HYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKKQKVVSRSSTEAEFR 423

Query: 1185 SLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIR 1364
            S+A++  ++ ++++LL EL    +    IW DN GAV LS NP+LH+RTKH ELD+ FIR
Sbjct: 424  SMASLVAEIQYVQNLLSELGHINKNQPLIWCDNQGAVLLSLNPVLHTRTKHFELDLWFIR 483

Query: 1365 DKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVIPKPKFELR 1514
            ++V+  +I V+H+P   QVADL TK  S   F  LR+KL V  +    LR
Sbjct: 484  ERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQSTLSLR 533



 Score = 75.5 bits (184), Expect = 6e-11
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = +1

Query: 16  WKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
           WK AM+ E+  LLKN TW L  LP DRK I CKW+FK K    G I++HKARLVA+G
Sbjct: 33  WKQAMQAEYDALLKNCTWDLVSLPPDRKAITCKWIFKNKYSQDGSILRHKARLVARG 89


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  412 bits (1058), Expect = e-136
 Identities = 219/470 (46%), Positives = 299/470 (63%), Gaps = 15/470 (3%)
 Frame = +3

Query: 135  GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHS 278
            GC W++            Y A+  A G  Q  G D+ ETFSP+IKP            + 
Sbjct: 66   GCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILTLAISNH 125

Query: 279  WPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLG 458
            W I Q+D++NAFLNG ++  +YM+Q PGFE V    LVCKL+K+LYGLKQA R W  +L 
Sbjct: 126  WDIHQLDVNNAFLNGSLNETVYMQQPPGFE-VPDSTLVCKLNKALYGLKQAPRQWFERLQ 184

Query: 459  TVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLK 638
              L+  GF  S+ D SLF  +     V +L+YVDDI+ITG++              FSLK
Sbjct: 185  YTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLNSIFSLK 244

Query: 639  DLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGE 818
             LG L+YFLGI+V    +G + L Q+KYI+ +L R +M  A  ISSPMVS   LSK   +
Sbjct: 245  QLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLSKHGSD 304

Query: 819  PLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDY 998
             L D   YRS+VGALQYAT+TRP+++++VNKV Q+M  PL +HW AVKRILRYL  T+ Y
Sbjct: 305  TLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILRYLKGTMFY 364

Query: 999  GLYFIASNTH---NLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSST 1169
            GL+   +  H   +L A+ DA WA+D D RR TSG  ++LG NL+SW ++K   V+ SST
Sbjct: 365  GLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQPVVARSST 424

Query: 1170 ETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELD 1349
            E EY SLA  T +V+W+++LL EL+     P TI+ DN   V+L++NP+LHSRTKH+E++
Sbjct: 425  EAEYRSLAQATSEVLWIQTLLHELRVPFSTP-TIYCDNQSTVSLAHNPVLHSRTKHMEIN 483

Query: 1350 MHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVIPKP 1499
            + F+R+KV + +++V+H+P  DQ AD  TKP+S   F  LR+KL V+  P
Sbjct: 484  LFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKVVELP 533



 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 37/64 (57%), Positives = 50/64 (78%)
 Frame = +1

Query: 1   LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
           L+ P W  AM++E+S LLKN TWTL +LP DR  IGCKWVF++K+++ G + ++KARLVA
Sbjct: 31  LKDPKWLEAMKQEYSALLKNNTWTLVQLPPDRNAIGCKWVFRIKENSDGSVNRYKARLVA 90

Query: 181 KGSL 192
           KG L
Sbjct: 91  KGFL 94


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  431 bits (1107), Expect = e-134
 Identities = 220/448 (49%), Positives = 293/448 (65%)
 Frame = +3

Query: 171  ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYME 350
            A G  Q  GLDYT+TFSPV+KP              WPI QID+DNAFLNGD+   +YM 
Sbjct: 950  ARGFSQQQGLDYTDTFSPVVKPVSIRIVLALAVSKGWPIHQIDVDNAFLNGDLKEDIYML 1009

Query: 351  QSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDI 530
            Q  GF +    + VCKL K+LYGLKQA RAW  KL  +L+ LGF  +R DSSLF     +
Sbjct: 1010 QPQGFHN-GAPNTVCKLRKALYGLKQAPRAWFQKLTLILLQLGFKQARSDSSLFTFTSKV 1068

Query: 531  GCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLN 710
              + +LIYVDDI+IT ++ +A          FF LKDLG+L+YFLGI+V+   +GG+ L+
Sbjct: 1069 TSIYILIYVDDIIITSNSPAAIQTLISTLHRFFPLKDLGSLHYFLGIEVNSDGAGGIHLS 1128

Query: 711  QAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPD 890
            Q KY+K IL + +M +AK + +PM     L+        DP+LYRS++GALQY T+TRPD
Sbjct: 1129 QTKYLKDILDKLNMSNAKPVKTPMAPSLKLTNDGTAVCPDPSLYRSVIGALQYLTITRPD 1188

Query: 891  IAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNTHNLTAFADAGWASDL 1070
            IAY+VNK+ Q+M  PL +HWKAVKR+LRYL  T+ +GL++  S    + A+ D+ WASD 
Sbjct: 1189 IAYTVNKLCQFMHHPLESHWKAVKRLLRYLQGTLQHGLHYKKSTDTGIHAYCDSDWASDH 1248

Query: 1071 DYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFE 1250
            +  R TSG CVYLG N+VSW AKK   VS SSTE E+ SLA++  +V ++++LL EL   
Sbjct: 1249 EDMRSTSGNCVYLGPNIVSWMAKKQRVVSRSSTEAEFRSLASLVTEVQYIQNLLSELHNS 1308

Query: 1251 QRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADL 1430
              +P  IW DN GAV LS NP+LH++TKH ELD+ F+R++V+  +I V+H+P   QVADL
Sbjct: 1309 STQPPLIWCDNQGAVLLSANPVLHTKTKHFELDLWFVRERVARGQIQVKHIPARFQVADL 1368

Query: 1431 FTKPISGQFFTKLRNKLNVIPKPKFELR 1514
             TK  S   F  LR+KL V  +    L+
Sbjct: 1369 LTKAPSSSIFLALRHKLTVDKQSTLSLK 1396



 Score = 70.9 bits (172), Expect = 3e-09
 Identities = 32/57 (56%), Positives = 39/57 (68%)
 Frame = +1

Query: 16   WKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
            WK AM+ E++ LLKN TW L  LP  R  I CKW+FK K    G I++HKARLVA+G
Sbjct: 896  WKQAMQDEYNALLKNHTWDLVSLPPGRTAITCKWIFKNKYKQDGSILRHKARLVARG 952


>gb|KYP63857.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 490

 Score =  406 bits (1043), Expect = e-134
 Identities = 219/480 (45%), Positives = 300/480 (62%), Gaps = 18/480 (3%)
 Frame = +3

Query: 105  WMQVGVQSEK---GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPX 239
            W  V + S +   GC W++            Y A+  A G     G DY ETFSPV+KP 
Sbjct: 14   WTLVSLPSNRIAFGCKWVFRVKENPDDIVHKYKARLVAKGFHHQFGFDYNETFSPVVKPV 73

Query: 240  XXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYG 419
                       H W IQQ+D++NAFLN +++ ++YM Q PGFE    K LV KLHK++YG
Sbjct: 74   TIRFILTLALTHHWSIQQLDVNNAFLNENLEEEVYMSQPPGFES-SDKTLVYKLHKAIYG 132

Query: 420  LKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXX 599
            LKQA  AW  KL   L  L F +S+ D SLF  +     + +L+YVDDI+ITG+NSS   
Sbjct: 133  LKQAPHAWFDKLKATLFQLNFQISKCDPSLFVYSHGNTVIYILVYVDDIIITGNNSSVLQ 192

Query: 600  XXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSP 779
                     FSLKDLG L+YFLGI+V     G L L Q+KYI+ +L R +M+++  ISSP
Sbjct: 193  SIISQLNSAFSLKDLGRLDYFLGIEVKSNFDGSLTLTQSKYIRDLLNRTNMENSNSISSP 252

Query: 780  MVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAV 959
            MVS         E   D +LYRS+VGALQYAT+TRP I++SVNKV Q+M +PL  HW A+
Sbjct: 253  MVS--------SEKFLDVSLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAI 304

Query: 960  KRILRYLTATIDYGLYFIAS---NTHNLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSW 1130
            KRILRYL  T+  GL+   +   +  ++ A+ DA WASD D ++ TS   +++G NL+SW
Sbjct: 305  KRILRYLQGTMFLGLHLHPTPYDSPLSIHAYCDADWASDPDDQKSTSSAAIFVGPNLISW 364

Query: 1131 SAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNN 1310
             +KK   V+ SSTE EY SLA  T +V+W+++LL EL      P  ++ DN+  VAL++N
Sbjct: 365  WSKKQTVVARSSTEIEYRSLALATAEVMWIQTLLSELHVSHHSP-VVYCDNMSTVALAHN 423

Query: 1311 PILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVI 1490
            P+LH+RTKH+ELD+ F+R+KV++  + V HVP IDQ AD+ TK +S  +F +LR KL ++
Sbjct: 424  PVLHARTKHIELDLFFVREKVAANLLHVVHVPAIDQYADILTKALSPSWFCELRTKLKLV 483



 Score = 67.4 bits (163), Expect = 2e-08
 Identities = 29/53 (54%), Positives = 40/53 (75%)
 Frame = +1

Query: 28  MEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
           M++E++ L+ NGTWTL  LP +R   GCKWVF+VK++    + K+KARLVAKG
Sbjct: 1   MKQEYNALMDNGTWTLVSLPSNRIAFGCKWVFRVKENPDDIVHKYKARLVAKG 53


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  430 bits (1105), Expect = e-134
 Identities = 232/468 (49%), Positives = 305/468 (65%), Gaps = 16/468 (3%)
 Frame = +3

Query: 135  GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHS 278
            GC W++            Y A+  A G  Q  G DY++T+SPV+KP              
Sbjct: 958  GCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKPITVRTVLTIALTSK 1017

Query: 279  WPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKH-LVCKLHKSLYGLKQASRAWSSKL 455
            WP+ Q+D++NAFLNG +   +YM+Q  GF  ++G+  LVCKLHK++YGLKQA RAW   L
Sbjct: 1018 WPLIQLDVNNAFLNGQLHEDVYMQQPQGF--IQGESTLVCKLHKAIYGLKQAPRAWYESL 1075

Query: 456  GTVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSL 635
               LIS GF  S+ D SL   N    C+L+LIYVDDI+ITGS+++A           FSL
Sbjct: 1076 TNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSNTAINLIVNKLNATFSL 1135

Query: 636  KDLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSPMVSRPILSKSDG 815
            K LGTL YFLGI+   T SG L L+QAKYI+ IL RA M+  KGIS+P+ +   LSK+  
Sbjct: 1136 KQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAGMEDCKGISTPLPANLKLSKTGA 1195

Query: 816  EPLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATID 995
            +P  +P LYRSIVGALQYAT+TRP++ YSV+KV Q+   PL +HW AVKRILRYL  +ID
Sbjct: 1196 DPFDNPTLYRSIVGALQYATITRPELGYSVSKVCQFFAQPLVSHWSAVKRILRYLKGSID 1255

Query: 996  YGLYFIASNTH---NLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSS 1166
            +GL  + + T    ++ AF DA WASD+D RR TSG C++ G NLVSW +KK   V+ SS
Sbjct: 1256 HGLTLLPATTSAPLSINAFCDADWASDIDDRRSTSGACIFFGPNLVSWWSKKQTLVAKSS 1315

Query: 1167 TETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLEL 1346
             E EY SLA+   +V+WL+SLL ELK     P  I+ DN  AVA+S+NP+LHSRTKH+EL
Sbjct: 1316 AEAEYRSLAHAASEVLWLQSLLHELKV-PIPPPVIYCDNQSAVAISHNPVLHSRTKHMEL 1374

Query: 1347 DMHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVI 1490
            D+ F+R+KV +K + V ++P   QVAD+ TK +S   F   R+KL V+
Sbjct: 1375 DIFFVREKVLNKSLVVSYIPAQLQVADILTKSLSKHLFYNFRSKLRVL 1422



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 29/57 (50%), Positives = 41/57 (71%)
 Frame = +1

Query: 16   WKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
            W  AM++E+  L  N TW+L  LP  ++ IGCKW+F++K++  G I K+KARLVAKG
Sbjct: 928  WTEAMQQEYQALQANKTWSLVPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKG 984


>gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 553

 Score =  407 bits (1046), Expect = e-134
 Identities = 209/443 (47%), Positives = 290/443 (65%), Gaps = 4/443 (0%)
 Frame = +3

Query: 171  ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYME 350
            A G  Q  GLD+TETF PV+KP             +W ++Q+DI NAFLNGD+   +YM 
Sbjct: 97   AKGFNQQSGLDFTETFIPVVKPITIRTVLTIALSLNWSLRQLDIANAFLNGDLQETIYMA 156

Query: 351  QSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDI 530
            Q PGF +   K++VCKL K LYGLKQA RAW  KL   L  LGF  ++ D SLF++    
Sbjct: 157  QPPGFTN-GDKNMVCKLQKFLYGLKQAPRAWFQKLHDTLSVLGFNYAKSDCSLFFRITTS 215

Query: 531  GCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLN 710
              +L+L+YVDD++I+GS+ +            F  +DLG  NYF GIQV+   +  L L 
Sbjct: 216  NIILILVYVDDLIISGSSQTEIDSVVTHLQTRFPARDLGFPNYFPGIQVTQMSNNSLHLT 275

Query: 711  QAKYIKYILLRADMQHAKGISSPMVSRPILS----KSDGEPLKDPALYRSIVGALQYATV 878
            Q KYI  +L RA+M  AK +++ M    ++S     SD +P ++P+LYRSIVG+LQY  +
Sbjct: 276  QTKYINDLLKRANMVTAKPVTTRMFQFRVVSLKLTNSDKDPCENPSLYRSIVGSLQYLII 335

Query: 879  TRPDIAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNTHNLTAFADAGW 1058
            TRP+I++SVNKV Q+MQ+P +THW+AVKRILRYL  T   G+    SN  ++ AF DA W
Sbjct: 336  TRPEISFSVNKVCQFMQEPKATHWQAVKRILRYLCGTATTGIVLSKSNNLHIFAFCDADW 395

Query: 1059 ASDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGE 1238
              D+D R+ T+G+CV+LG N +SWS++K   VS S+ E EY SLA VT ++ W+++LL E
Sbjct: 396  GVDVDDRKSTTGFCVFLGCNPISWSSRKQQAVSRSTIEAEYRSLAAVTAEITWMKNLLHE 455

Query: 1239 LKFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQ 1418
            L+    +   I+ DNL AV L+ NPILHS+TKH ELD++F+RDKV  +EISV+H+P ++Q
Sbjct: 456  LQVPNIRTPKIYCDNLSAVLLAANPILHSKTKHFELDLYFVRDKVQKREISVQHIPSLEQ 515

Query: 1419 VADLFTKPISGQFFTKLRNKLNV 1487
             AD+FTKP++   F+    KL +
Sbjct: 516  TADIFTKPLTYPSFSSCMYKLRL 538



 Score = 80.1 bits (196), Expect = 2e-12
 Identities = 34/62 (54%), Positives = 45/62 (72%)
 Frame = +1

Query: 1   LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
           L +P WK AM++E++ L+ N TW L  LP    L+GCKW+FKVK +A G I +HKARL+A
Sbjct: 38  LAIPNWKQAMDQEYNALIHNKTWVLTHLPVGANLVGCKWIFKVKTNADGTINRHKARLMA 97

Query: 181 KG 186
           KG
Sbjct: 98  KG 99


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  405 bits (1041), Expect = e-133
 Identities = 210/442 (47%), Positives = 286/442 (64%), Gaps = 3/442 (0%)
 Frame = +3

Query: 171  ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYME 350
            A G  Q+ G D+ ETFSPVIKP            ++W + Q+D++NAFLNG ++  +YM 
Sbjct: 91   AKGFHQVHGFDFHETFSPVIKPITIRIILTLALTNNWNLFQLDVNNAFLNGTLEETIYMV 150

Query: 351  QSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDI 530
            Q PGFE    K LVCKL+K+LYGLKQA R W +KL   L   GF  S+ D SLF      
Sbjct: 151  QPPGFE-AGDKSLVCKLNKALYGLKQAPRQWFNKLKLTLTRFGFQASKCDPSLFQYQHQT 209

Query: 531  GCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLN 710
              + +L+YVDDI+ITGS+S             FSLK LG+L+YFLGI+V       L L 
Sbjct: 210  HTIFILVYVDDIIITGSSSLLIQQITNQLDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLT 269

Query: 711  QAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPD 890
            Q+KYI+ +L + ++  A G  SPM S   LS+S  +   DP  +RS+VGALQYAT+TRP+
Sbjct: 270  QSKYIRDLLFKTNLAEAHGAPSPMFSNCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPE 329

Query: 891  IAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYF---IASNTHNLTAFADAGWA 1061
            I+++VNKV Q+M  PL +HW AVKRIL+YL  T+ YGL+      +   +LTAF DA WA
Sbjct: 330  ISFAVNKVCQFMATPLDSHWVAVKRILKYLKGTLSYGLHMQPAAVNGPISLTAFCDADWA 389

Query: 1062 SDLDYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGEL 1241
            SD+D RR TSG  ++ G NL+SW ++K   ++ SSTE EY S+A  + ++ W+++LL EL
Sbjct: 390  SDIDDRRSTSGSAIFFGPNLISWWSRKQRVIARSSTEAEYRSIAQASAELTWIQALLQEL 449

Query: 1242 KFEQRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQV 1421
            K     PT +  DN  AVA+++NP+ HS+TKH+E+D+ F+RDKV SK++ V H+P +DQ 
Sbjct: 450  KVPFSTPTLL-CDNQSAVAIAHNPVFHSKTKHMEIDVFFVRDKVLSKQLLVYHIPALDQW 508

Query: 1422 ADLFTKPISGQFFTKLRNKLNV 1487
            ADL TKP+S   F  L +KL V
Sbjct: 509  ADLLTKPLSAARFEVLWDKLKV 530



 Score = 77.4 bits (189), Expect = 1e-11
 Identities = 35/59 (59%), Positives = 45/59 (76%)
 Frame = +1

Query: 10  PVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
           P W +AM++E++ L+ N TW L  LP DRK +GCKWVF+VK++A G I K KARLVAKG
Sbjct: 35  PNWFSAMQQEYNALMLNHTWDLVSLPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKG 93


>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 552

 Score =  403 bits (1035), Expect = e-132
 Identities = 213/448 (47%), Positives = 281/448 (62%)
 Frame = +3

Query: 171  ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYME 350
            A G  Q  G D++ETFSPV+KP             SW ++QIDI NAFLNGD+   +YM 
Sbjct: 98   AKGFHQRDGFDFSETFSPVVKPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMA 157

Query: 351  QSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDI 530
            Q PGF     K LVCKL KSLYGLKQA RAW  +L   L  +GF  +++DSSLF +    
Sbjct: 158  QPPGFIQT-DKSLVCKLQKSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKD 216

Query: 531  GCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLN 710
                +L+YVDDI+I GS++SA           F ++DLG  NYFLGIQV    +  L L 
Sbjct: 217  HITFILVYVDDIIICGSSTSAISSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLT 276

Query: 711  QAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPD 890
            Q KYI  +L R +M  AK I +PMV+   L   +G    +   YRSIVG+LQY T+TRP+
Sbjct: 277  QTKYINDLLNRTNMHMAKPIKTPMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPE 336

Query: 891  IAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNTHNLTAFADAGWASDL 1070
            IA+SVNKV QYMQ P + HW AVKRILRYL  T++  L+ I S   ++  F DA W S+L
Sbjct: 337  IAFSVNKVCQYMQAPRNPHWMAVKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNL 396

Query: 1071 DYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFE 1250
            + R+ T+GY +YLG N +SWS+KK   VS S+TE EY S+A +T ++ WL++LL EL   
Sbjct: 397  EDRKSTTGYVIYLGANPISWSSKKQQAVSRSTTEAEYRSIAAITAEMTWLKNLLYELHIP 456

Query: 1251 QRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADL 1430
                  I+ DNL AV LS NPILH++TKH E+D++F+RD+V  K+++V+H+P  +Q  D+
Sbjct: 457  TTSKPIIYCDNLSAVLLSTNPILHTKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQTTDI 516

Query: 1431 FTKPISGQFFTKLRNKLNVIPKPKFELR 1514
             TK +S   F   +NKL V   P   LR
Sbjct: 517  LTKALSFPAFNHCKNKLRVRLHPTLSLR 544



 Score = 79.3 bits (194), Expect = 3e-12
 Identities = 35/62 (56%), Positives = 44/62 (70%)
 Frame = +1

Query: 1   LQVPVWKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVA 180
           + +P WK  M +E+  L+KN TW L  LP  R LIGC+WVFKVK ++ G I +HKARLVA
Sbjct: 39  MAIPHWKKTMLEEYKALMKNNTWILTTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVA 98

Query: 181 KG 186
           KG
Sbjct: 99  KG 100


>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  400 bits (1029), Expect = e-131
 Identities = 216/480 (45%), Positives = 298/480 (62%), Gaps = 18/480 (3%)
 Frame = +3

Query: 105  WMQVGVQSEK---GCIWLY------------Y*AQG*ACG*GQLMGLDYTETFSPVIKPX 239
            W  V +   K   GC W++            Y A+  A G  Q  G DY ETFSPV+KP 
Sbjct: 54   WTLVSLPPNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPV 113

Query: 240  XXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYMEQSPGFEDVRGKHLVCKLHKSLYG 419
                       H W IQQ+D++N FLNG+++ ++YM Q PGFE    K LV K+HK +YG
Sbjct: 114  TIRLILTLALTHHWSIQQLDVNNTFLNGNLEEEVYMSQPPGFES-SDKALVYKIHKEIYG 172

Query: 420  LKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDIGCVLVLIYVDDILITGSNSSAXX 599
            LKQA RAW  KL   L  L F +S+ + SLF  +     + +L+YVDDI+ITG+NSS   
Sbjct: 173  LKQAPRAWFDKLKATLFQLNFQISKCNPSLFVYSHGNHVIYILVYVDDIIITGNNSSILR 232

Query: 600  XXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLNQAKYIKYILLRADMQHAKGISSP 779
                     FSLKDLG L++FLGI+      G   L Q+KYI+ +L R +M+++  ISSP
Sbjct: 233  SIIAQLNSAFSLKDLGRLDFFLGIEAKSNPDGSPTLTQSKYIRDLLNRTNMENSNPISSP 292

Query: 780  MVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPDIAYSVNKVSQYMQDPLSTHWKAV 959
            MVS   LSK+  +   D  LYRS+VGALQYAT+TRP I++SVNKV Q+M +PL  HW A+
Sbjct: 293  MVSGCKLSKTGLKKFIDVTLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAI 352

Query: 960  KRILRYLTATIDYGLYFIASNTH---NLTAFADAGWASDLDYRRYTSGYCVYLGNNLVSW 1130
            KRILRYL  T+  GL+   + ++   ++ A+ DA WASD D  R TSG  +++G NL+SW
Sbjct: 353  KRILRYLKGTMFPGLHLQPAPSNSPLSICAYRDADWASDPDDGRSTSGASIFVGPNLISW 412

Query: 1131 SAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFEQRKPTTIWVDNLGAVALSNN 1310
             +KK   V+ SS E EY SLA  T + +W+++LL EL      P  ++ DN+  V+L++N
Sbjct: 413  WSKKQTVVARSSAEAEYRSLALATAEALWIQTLLSELHVSHHTP-VVYCDNMSTVSLAHN 471

Query: 1311 PILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADLFTKPISGQFFTKLRNKLNVI 1490
             +LH+RTKH+E+D+ F+R+KVS+  + V HVP IDQ AD+ TK +S   F +LR KL ++
Sbjct: 472  HVLHARTKHMEMDLFFVREKVSANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLV 531



 Score = 77.8 bits (190), Expect = 1e-11
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = +1

Query: 16  WKAAMEKEFSTLLKNGTWTLCELPYDRKLIGCKWVFKVKKDASGYIIKHKARLVAKG 186
           W AAM++E++ LL NGTWTL  LP ++  IGCKWVF++K++  G + K+KARLVAKG
Sbjct: 37  WLAAMKQEYNALLNNGTWTLVSLPPNKTAIGCKWVFRIKENLDGTVNKYKARLVAKG 93


>gb|KYP35708.1| Copia protein [Cajanus cajan]
          Length = 493

 Score =  398 bits (1023), Expect = e-131
 Identities = 205/443 (46%), Positives = 285/443 (64%)
 Frame = +3

Query: 171  ACG*GQLMGLDYTETFSPVIKPXXXXXXXXXXXXHSWPIQQIDIDNAFLNGDIDTKLYME 350
            A G  Q  GLDY ETFSPV+K              +W ++Q+DI+NAFLNG +   +YM 
Sbjct: 51   AKGFQQTAGLDYEETFSPVVKSSTIRIILAIAVHLNWEVKQLDINNAFLNGYLKQTVYMN 110

Query: 351  QSPGFEDVRGKHLVCKLHKSLYGLKQASRAWSSKLGTVLISLGFLVSRVDSSLFYKNGDI 530
            Q  GF D    + VCKL K++YGLKQA RAW   L   L+  GF  ++ D+SLF   G  
Sbjct: 111  QPEGFADPTKPNHVCKLSKAIYGLKQAPRAWFDSLKNALLKWGFQNTKSDTSLFTLRGKN 170

Query: 531  GCVLVLIYVDDILITGSNSSAXXXXXXXXXHFFSLKDLGTLNYFLGIQVSPTDSGGLFLN 710
                +LIYVDDI++TG+N+             FSLKDLG L+YFLGI+V   D+ G++L 
Sbjct: 171  HITFLLIYVDDIIVTGNNTKFLEAFVKQLNIVFSLKDLGQLHYFLGIEVH-RDATGMYLK 229

Query: 711  QAKYIKYILLRADMQHAKGISSPMVSRPILSKSDGEPLKDPALYRSIVGALQYATVTRPD 890
            Q+KYIK +L +  M++A    +PMV+    +  +GE LK+P  +R  +GALQY T TRPD
Sbjct: 230  QSKYIKDLLRKFKMENASPCPTPMVTGKQFT-IEGEKLKNPTEFRQAIGALQYLTNTRPD 288

Query: 891  IAYSVNKVSQYMQDPLSTHWKAVKRILRYLTATIDYGLYFIASNTHNLTAFADAGWASDL 1070
            IA+SVNK+SQ+M  P   HW+ +KRILRYL  T+ Y L+   S   ++  F+DA WA+ +
Sbjct: 289  IAFSVNKLSQFMSSPTLDHWQGIKRILRYLQGTMHYCLHIKCSAYLDIAGFSDADWATSV 348

Query: 1071 DYRRYTSGYCVYLGNNLVSWSAKKHHTVSHSSTETEYISLANVTCDVIWLRSLLGELKFE 1250
            D R+  +G CV+LG+ LVSWS++K   VS SSTE+EY +LA++  ++ W RSLL ELK  
Sbjct: 349  DDRKSMAGQCVFLGDTLVSWSSRKQQVVSRSSTESEYRALADLAAEITWTRSLLTELKLP 408

Query: 1251 QRKPTTIWVDNLGAVALSNNPILHSRTKHLELDMHFIRDKVSSKEISVRHVPKIDQVADL 1430
            Q +   +W DNL A AL++NP++H+RTKH+E D+H+IRD+V   ++ V +VP  DQ+AD 
Sbjct: 409  QPRKPILWCDNLSAKALASNPVMHARTKHIETDVHYIRDQVLQDKVIVAYVPSADQIADC 468

Query: 1431 FTKPISGQFFTKLRNKLNVIPKP 1499
             TK ++   F +LR+KL V P P
Sbjct: 469  LTKALTHTRFNQLRDKLGVTPSP 491