BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00019304
         (2134 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo...   557   0.0  
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo...   560   0.0  
gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo...   441   e-144
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         433   e-142
gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Jap...   432   e-142
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]     433   e-142
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   430   e-141
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   430   e-141
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   430   e-141
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   430   e-141
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   430   e-141
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   430   e-141
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   430   e-141
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc...   430   e-141
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   428   e-141
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo...   430   e-141
gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subc...   431   e-141
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         429   e-141
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   429   e-141
gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subc...   428   e-140

>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 714

 Score =  557 bits (1435), Expect = 0.0
 Identities = 276/381 (72%), Positives = 319/381 (83%), Gaps = 2/381 (0%)
 Frame = -1

Query: 1138 CGGRL*FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLI 959
            C  +  F S Q  GTRTVSMGNGS+A+V+G G+V+L LSSG  L LD V H+ +IRKNLI
Sbjct: 227  CADKKLFSSYQECGTRTVSMGNGSLARVIGLGRVELELSSGNCLVLDEVFHVSEIRKNLI 286

Query: 958  SASLLVRNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXS-IAN 782
            SA+LLV+ G+KVVFESN+VVISRHG F+GKG++ DGLF+LS+M            S I+N
Sbjct: 287  SAALLVQQGFKVVFESNRVVISRHGSFVGKGYICDGLFKLSIMSSFINKNSSISSSSISN 346

Query: 781  VECCDTWHGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHK-SVDKET 605
            VECCD WHGRLGHVN  +IKRMM LDLIPKS   +K+KCE+CVQAKQPRK  + SV KET
Sbjct: 347  VECCDIWHGRLGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKET 406

Query: 604  MLLGLIHSDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVEN 425
             +L LIHSDICDSN V+TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAEVEN
Sbjct: 407  CVLELIHSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVEN 466

Query: 424  QLEKKIKILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNA 245
            QLE+ IKILRSDRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NA
Sbjct: 467  QLERSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINA 526

Query: 244  MLLSSGLPKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNI 65
            ML+SSGLP N WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVW CLAKVNI
Sbjct: 527  MLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWWCLAKVNI 586

Query: 64   PIVKKRKIGPKTVDCVFVGYS 2
            PI KKRKIGPKTVDCVF+GYS
Sbjct: 587  PINKKRKIGPKTVDCVFLGYS 607



 Score =  157 bits (398), Expect = 7e-37
 Identities = 92/197 (46%), Positives = 113/197 (57%), Gaps = 13/197 (6%)
 Frame = -2

Query: 1653 MVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPENFS 1474
            M D K  SDQ+ EFEN+IYDMK K +   D + VS LI KLPPSWS+FAR LKHKP+NF+
Sbjct: 4    MEDGKHFSDQVHEFENIIYDMKMKEITLPDIMLVSLLISKLPPSWSEFARSLKHKPDNFT 63

Query: 1473 LDELFVALRIEDRHRSSQQ-TKKPVFQAKALIVEN-----XXXXXXXXXXXXXXXXXXXX 1312
            L +L V LRIED+HR SQ+ + K  FQAKA +VEN                         
Sbjct: 64   LSDLLVTLRIEDKHRISQKVSNKTPFQAKAHLVENANKPKQKIFKKSGFSNNNKFGQSSH 123

Query: 1311 XXXXXXXXXXXXXXXGSQVQ-----CWVCGRTNHIAKNCFHRHGQNNQ--SKPPPTSKPQ 1153
                            S++Q     C+VCGR NH AK+CFHR  Q     S P  +S+PQ
Sbjct: 124  FSKNKNKAFNNNYKPKSKIQGNESFCFVCGRNNHFAKDCFHRRRQPKDITSDPKSSSQPQ 183

Query: 1152 ANVVTVGAASDSPANRY 1102
            ANV+T  A+SDSP+NRY
Sbjct: 184  ANVITANASSDSPSNRY 200


>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 880

 Score =  560 bits (1443), Expect = 0.0
 Identities = 277/381 (72%), Positives = 320/381 (83%), Gaps = 2/381 (0%)
 Frame = -1

Query: 1138 CGGRL*FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLI 959
            C  +  F S Q  GTRTVSMGNGS+A+V+G G+V+L LSSG  L LD V H+ +IRKNLI
Sbjct: 229  CADKKLFSSYQECGTRTVSMGNGSLARVIGLGRVELELSSGNCLVLDEVFHVSEIRKNLI 288

Query: 958  SASLLVRNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXS-IAN 782
            SA+LLV+ G+KVVFESN+VVISRHG F+GKG++ DGLF+LS+M            S I+N
Sbjct: 289  SAALLVQQGFKVVFESNRVVISRHGSFVGKGYICDGLFKLSIMSSFINKNSSISSSSISN 348

Query: 781  VECCDTWHGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHK-SVDKET 605
            VECCD WHGRLGHVN  +IKRMM LDLIPKS   +K+KCE+CVQAKQPRK  + SV KET
Sbjct: 349  VECCDIWHGRLGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKET 408

Query: 604  MLLGLIHSDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVEN 425
             +L LIHSDICDSN V+TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAEVEN
Sbjct: 409  CVLELIHSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVEN 468

Query: 424  QLEKKIKILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNA 245
            QLE+ IKILRSDRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM+NA
Sbjct: 469  QLERSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINA 528

Query: 244  MLLSSGLPKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNI 65
            ML+SSGLP N WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVWGCLAKVNI
Sbjct: 529  MLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNI 588

Query: 64   PIVKKRKIGPKTVDCVFVGYS 2
            PI KKRKIGPKTVDCVF+GYS
Sbjct: 589  PINKKRKIGPKTVDCVFLGYS 609



 Score =  156 bits (394), Expect = 5e-36
 Identities = 91/199 (45%), Positives = 115/199 (57%), Gaps = 13/199 (6%)
 Frame = -2

Query: 1659 FQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKPEN 1480
            FQM D K  SDQ+ EFEN+IYDMK K +   D + VS LI KLPPSWS+FAR LKHKP++
Sbjct: 4    FQMEDGKPFSDQVHEFENIIYDMKMKEITLPDIMLVSLLISKLPPSWSEFARSLKHKPDH 63

Query: 1479 FSLDELFVALRIEDRHRSSQQ-TKKPVFQAKALIVEN-----XXXXXXXXXXXXXXXXXX 1318
            F+L +L V LRIED++R SQ+ + K  FQAKA +V+N                       
Sbjct: 64   FTLSDLLVTLRIEDKYRISQKDSNKTPFQAKAHLVKNANKPKQKFFKKIGFSNNNKFGQS 123

Query: 1317 XXXXXXXXXXXXXXXXXGSQVQ-----CWVCGRTNHIAKNCFHRHGQNNQ--SKPPPTSK 1159
                              S++Q     C+VCGR NH AK+CFHR  Q     S P  +S+
Sbjct: 124  SHFSKNKNKAFNNNYKPKSKIQGNESFCFVCGRNNHFAKDCFHRRRQPKDITSDPKSSSQ 183

Query: 1158 PQANVVTVGAASDSPANRY 1102
            PQANV+T  A+SDSP+NRY
Sbjct: 184  PQANVITANASSDSPSNRY 202


>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 565

 Score =  441 bits (1135), Expect = e-144
 Identities = 210/264 (79%), Positives = 235/264 (89%), Gaps = 1/264 (0%)
 Frame = -1

Query: 790 IANVECCDTWHGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHK-SVD 614
           I+NVECCD WHGRLGHVN  +IKRMM LDLIPKS   +K+KCE+CVQAKQPRK  + SV 
Sbjct: 16  ISNVECCDIWHGRLGHVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQ 75

Query: 613 KETMLLGLIHSDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAE 434
           KET +L LIHSDICDSN V+TRGG +YFITFIDDFSKYCYVYLI  KS LF+KFK YKAE
Sbjct: 76  KETCVLELIHSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAE 135

Query: 433 VENQLEKKIKILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDM 254
           VENQLEK IKILRSDRGGEY+S+EM +F + HGI+HEVTP Y+PQSNG+AERKNRTLLDM
Sbjct: 136 VENQLEKSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDM 195

Query: 253 VNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAK 74
           +NAML+SSGLP N WGEAL++AC ILNR+PYKNSDKTPYELWKN+KP LK+LKVWGCLAK
Sbjct: 196 INAMLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAK 255

Query: 73  VNIPIVKKRKIGPKTVDCVFVGYS 2
           VNIPI KKRKIGPKTVDCVF+GYS
Sbjct: 256 VNIPINKKRKIGPKTVDCVFLGYS 279


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  433 bits (1114), Expect(2) = e-142
 Identities = 212/374 (56%), Positives = 273/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L++WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  101 bits (252), Expect(2) = e-142
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQIGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Japonica Group]
            gi|57863849|gb|AAW56890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1274

 Score =  432 bits (1110), Expect(2) = e-142
 Identities = 211/374 (56%), Positives = 272/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSD GGE+ S+E   FC+ HGI+HE+TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDHGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  103 bits (256), Expect(2) = e-142
 Identities = 73/303 (24%), Positives = 122/303 (40%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D+     +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDNFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLNVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  433 bits (1113), Expect(2) = e-142
 Identities = 212/374 (56%), Positives = 273/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSQASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W ++KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIDRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  101 bits (252), Expect(2) = e-142
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       I+ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIIEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++ +     D      +I KLP SW  F   LKHK 
Sbjct: 110  HDYKMADNRSVIEQAHEIQTMAKELELRKCVLPDKFVAGCIIAKLPSSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  101 bits (252), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGILTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  428 bits (1101), Expect(2) = e-141
 Identities = 209/374 (55%), Positives = 270/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             ++ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYEYGGLFRFSLSDFCNKSVNHICGTVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCL KVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLVKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  103 bits (256), Expect(2) = e-141
 Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V     +E   +   K  E  T+         
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEEVLTAEQQKQFEEATTLFV------ 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSNGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  430 bits (1105), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  101 bits (252), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGILTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1468

 Score =  431 bits (1107), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 271/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 404  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 463

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 464  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 521

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 522  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 581

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 582  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 641

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 642  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 701

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 702  PKTWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 761

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 762  LGPKTVDCVFLGYA 775



 Score =  100 bits (249), Expect(2) = e-141
 Identities = 72/303 (23%), Positives = 120/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 96   RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 149

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 150  -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 196

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 197  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 256

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 257  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 309

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C    G     K P     ++  VT+G 
Sbjct: 310  TNFKKQKKNNINPNQDERTCFVCGQVGHLARKCLQCKGM----KAPAGQTSKSANVTIGN 365

Query: 1128 ASD 1120
              D
Sbjct: 366  TGD 368


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  429 bits (1103), Expect(2) = e-141
 Identities = 210/374 (56%), Positives = 270/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+  +  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKSSKCHSCVQSKQPRKPHKAAKERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAE+ENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEIENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  429 bits (1103), Expect(2) = e-141
 Identities = 211/374 (56%), Positives = 270/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (253), Expect(2) = e-141
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281


>gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1249

 Score =  428 bits (1100), Expect(2) = e-140
 Identities = 210/374 (56%), Positives = 270/374 (72%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1120 FPS*QVSGTRTVSMGNGSVAQVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLV 941
            F S QV+   TV MGNGS A V G G V L  +SGK++ L  V H+P I +NL+S S L 
Sbjct: 317  FSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLT 376

Query: 940  RNGYKVVFESNKVVISRHGLFIGKGFMLDGLFRLSVMPXXXXXXXXXXXSIANVECCDTW 761
            R+G+K+VFESNKVV+S+HG FIGKG+   GLFR S+             S+ +    + W
Sbjct: 377  RDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVW 434

Query: 760  HGRLGHVNSGTIKRMMHLDLIPKSSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIH 584
            H RL H+N G + R+  + LIP  SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H
Sbjct: 435  HSRLCHINFGLMSRLSSMCLIPNFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLH 494

Query: 583  SDICDSNHVLTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIK 404
            SD+C+ N VLT+GG +YF+T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK
Sbjct: 495  SDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIK 554

Query: 403  ILRSDRGGEYASDEMVDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGL 224
             LRSDRGGE+ S+E   FC+ HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GL
Sbjct: 555  RLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGL 614

Query: 223  PKNCWGEALYSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRK 44
            PK  WGEAL ++  +LNRVP +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK
Sbjct: 615  PKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRK 674

Query: 43   IGPKTVDCVFVGYS 2
            +GPKTVDCVF+GY+
Sbjct: 675  LGPKTVDCVFLGYA 688



 Score =  102 bits (254), Expect(2) = e-140
 Identities = 73/303 (24%), Positives = 121/303 (39%), Gaps = 1/303 (0%)
 Frame = -2

Query: 2025 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSAETPTSKDTTKEXXX 1846
            +P+KF G +F  WQ ++  WLT +  F V        G+     +AE     +       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV------STGKPEGVLTAEQQKQFEEATTLFV 62

Query: 1845 XXXXXXXXXXLCHGRILSALSDSIYRIFSHTKSAFELWNALDYRYGTAEKGLKRVSIDDW 1666
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++ +
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1665 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1486
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1485 ENFSLDELFVALRIEDRHRSSQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 1309
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHK-------AQNKSKGKYKAQQT 222

Query: 1308 XXXXXXXXXXXXXXGSQVQCWVCGRTNHIAKNCFHRHGQNNQSKPPPTSKPQANVVTVGA 1129
                            +  C+VCG+  H+A+ C  R G     K P     ++  VT+G 
Sbjct: 223  TNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSAKVTIGN 278

Query: 1128 ASD 1120
              D
Sbjct: 279  TGD 281