BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00018623
         (2737 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011087529.1| PREDICTED: putative RNA polymerase II subuni...   959   0.0  
ref|XP_011087531.1| PREDICTED: putative RNA polymerase II subuni...   958   0.0  
ref|XP_011087530.1| PREDICTED: putative RNA polymerase II subuni...   945   0.0  
ref|XP_012859052.1| PREDICTED: putative RNA polymerase II subuni...   816   0.0  
emb|CAN62034.1| hypothetical protein VITISV_014731 [Vitis vinifera]   715   0.0  
ref|XP_002280625.1| PREDICTED: putative RNA polymerase II subuni...   711   0.0  
ref|XP_009771014.1| PREDICTED: putative RNA polymerase II subuni...   699   0.0  
ref|XP_015063149.1| PREDICTED: putative RNA polymerase II subuni...   692   0.0  
ref|XP_004230345.1| PREDICTED: putative RNA polymerase II subuni...   687   0.0  
ref|XP_009602820.1| PREDICTED: putative RNA polymerase II subuni...   685   0.0  
ref|XP_009629188.1| PREDICTED: putative RNA polymerase II subuni...   682   0.0  
ref|XP_009629194.1| PREDICTED: putative RNA polymerase II subuni...   679   0.0  
ref|XP_012072543.1| PREDICTED: putative RNA polymerase II subuni...   678   0.0  
ref|XP_006358558.1| PREDICTED: putative RNA polymerase II subuni...   676   0.0  
gb|KYP49456.1| RNA polymerase II-associated protein 2 [Cajanus c...   656   0.0  
ref|XP_002521936.1| PREDICTED: putative RNA polymerase II subuni...   654   0.0  
ref|XP_002321396.2| hypothetical protein POPTR_0015s01330g [Popu...   651   0.0  
ref|XP_010042212.1| PREDICTED: putative RNA polymerase II subuni...   639   0.0  
ref|XP_015169444.1| PREDICTED: putative RNA polymerase II subuni...   621   0.0  
ref|XP_015169443.1| PREDICTED: putative RNA polymerase II subuni...   621   0.0  

>ref|XP_011087529.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Sesamum indicum]
          Length = 699

 Score =  959 bits (2479), Expect = 0.0
 Identities = 505/663 (76%), Positives = 560/663 (84%), Gaps = 12/663 (1%)
 Frame = -2

Query: 2490 LEGNSKKMTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIAN 2311
            +  ++ +M KDEVLTVKDAVHKLQLSLL+GI +ENQL+AAGSLI RSDYQDVVTERTI N
Sbjct: 38   VRNSNLEMKKDEVLTVKDAVHKLQLSLLEGINNENQLSAAGSLICRSDYQDVVTERTIIN 97

Query: 2310 VCGYPLCGNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERS 2131
            +CGYPLC NSL +ERP KGRYRISLKEHKVYDLQETY+YCSSSCLINSRAFAASLQEERS
Sbjct: 98   MCGYPLCSNSLPSERPRKGRYRISLKEHKVYDLQETYLYCSSSCLINSRAFAASLQEERS 157

Query: 2130 STLNPAKLNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSN 1951
            S+LNPA LNEVLKLFDGLSLDS V+MG NGDLGLS LKI+EKTDT AG+V+LEEWIGPSN
Sbjct: 158  SSLNPATLNEVLKLFDGLSLDSAVDMG-NGDLGLSELKIEEKTDTEAGEVSLEEWIGPSN 216

Query: 1950 AIDGYVPRRDRDLKHPQSNN-NKGERRE-VGSKHRHVRPNAADILSYDMNFTSTIITQDE 1777
            AIDGYVPR +R+LK  QS+N  KG R+E V S+++H  P+ ADILS D+NFTSTIITQDE
Sbjct: 217  AIDGYVPRNERNLKPKQSSNLKKGARQEQVESEYKHDPPDVADILSSDLNFTSTIITQDE 276

Query: 1776 YSISKTVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETRSK--NKSKNVITKDD 1603
            YSISK+VP VK KE KGK S  +VN Q N ++KP APL N+QET+SK  +K K+V   DD
Sbjct: 277  YSISKSVPLVKDKESKGKVSINDVNSQGNQMEKPDAPLPNVQETKSKKSDKHKHVTKTDD 336

Query: 1602 KLSLLENIAGPSQNDSTKAVKELQ---ESTAGAXXXXXXXXXXXK--ATRSVTWADEKTD 1438
            KLS+LE  AGPSQND TK     +   E  +GA              ATRSVTWAD KTD
Sbjct: 337  KLSILEAAAGPSQNDLTKEENGHRLGKECASGATILKSSLKTSDSKKATRSVTWADAKTD 396

Query: 1437 GDGQNLNECRELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEA 1258
            GDGQNL E RE+KD KGA+VTSHSAD+EVG+ESYR ASAEACA AL+QAAE VA+G+ + 
Sbjct: 397  GDGQNLCEFREVKDGKGALVTSHSADQEVGDESYRIASAEACARALSQAAEAVATGQHDV 456

Query: 1257 SDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDS 1087
            SDAVSEAGVIILPPPH  DE   EE GDV +TDP+ LKWPPKPG           SWYDS
Sbjct: 457  SDAVSEAGVIILPPPHEVDEAKHEEIGDVTDTDPVLLKWPPKPGFSNADLFDSEDSWYDS 516

Query: 1086 PPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGR 907
            PPEGF+LTLSPFSTMFMALF+W++SSSLAYIYGKEESFHEEY+SVNGREYP K+VMPDGR
Sbjct: 517  PPEGFSLTLSPFSTMFMALFAWITSSSLAYIYGKEESFHEEYISVNGREYPHKVVMPDGR 576

Query: 906  SSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAI 727
            SSEIKQTLAGCLARALPGLVAELRLPIP+ST+EQGMGRLLDTMSFIDPLPAFRMKQW  I
Sbjct: 577  SSEIKQTLAGCLARALPGLVAELRLPIPMSTIEQGMGRLLDTMSFIDPLPAFRMKQWQVI 636

Query: 726  VLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQFSTQ 547
            VLLFLDALSVSRIPALTPY+M RRILLPKV+EGAQISAEEFEIMKDLIIPLGRVPQFSTQ
Sbjct: 637  VLLFLDALSVSRIPALTPYLMGRRILLPKVLEGAQISAEEFEIMKDLIIPLGRVPQFSTQ 696

Query: 546  SGG 538
            SGG
Sbjct: 697  SGG 699


>ref|XP_011087531.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X3 [Sesamum indicum]
            gi|747080559|ref|XP_011087533.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X3 [Sesamum indicum]
          Length = 655

 Score =  958 bits (2477), Expect = 0.0
 Identities = 505/656 (76%), Positives = 556/656 (84%), Gaps = 12/656 (1%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M KDEVLTVKDAVHKLQLSLL+GI +ENQL+AAGSLI RSDYQDVVTERTI N+CGYPLC
Sbjct: 1    MKKDEVLTVKDAVHKLQLSLLEGINNENQLSAAGSLICRSDYQDVVTERTIINMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ERP KGRYRISLKEHKVYDLQETY+YCSSSCLINSRAFAASLQEERSS+LNPA 
Sbjct: 61   SNSLPSERPRKGRYRISLKEHKVYDLQETYLYCSSSCLINSRAFAASLQEERSSSLNPAT 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LNEVLKLFDGLSLDS V+MG NGDLGLS LKI+EKTDT AG+V+LEEWIGPSNAIDGYVP
Sbjct: 121  LNEVLKLFDGLSLDSAVDMG-NGDLGLSELKIEEKTDTEAGEVSLEEWIGPSNAIDGYVP 179

Query: 1929 RRDRDLKHPQSNN-NKGERRE-VGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISKTV 1756
            R +R+LK  QS+N  KG R+E V S+++H  P+ ADILS D+NFTSTIITQDEYSISK+V
Sbjct: 180  RNERNLKPKQSSNLKKGARQEQVESEYKHDPPDVADILSSDLNFTSTIITQDEYSISKSV 239

Query: 1755 PAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETRSK--NKSKNVITKDDKLSLLEN 1582
            P VK KE KGK S  +VN Q N ++KP APL N+QET+SK  +K K+V   DDKLS+LE 
Sbjct: 240  PLVKDKESKGKVSINDVNSQGNQMEKPDAPLPNVQETKSKKSDKHKHVTKTDDKLSILEA 299

Query: 1581 IAGPSQNDSTKAVKELQ---ESTAGAXXXXXXXXXXXK--ATRSVTWADEKTDGDGQNLN 1417
             AGPSQND TK     +   E  +GA              ATRSVTWAD KTDGDGQNL 
Sbjct: 300  AAGPSQNDLTKEENGHRLGKECASGATILKSSLKTSDSKKATRSVTWADAKTDGDGQNLC 359

Query: 1416 ECRELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEASDAVSEA 1237
            E RE+KD KGA+VTSHSAD+EVG+ESYR ASAEACA AL+QAAE VA+G+ + SDAVSEA
Sbjct: 360  EFREVKDGKGALVTSHSADQEVGDESYRIASAEACARALSQAAEAVATGQHDVSDAVSEA 419

Query: 1236 GVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDSPPEGFNL 1066
            GVIILPPPH  DE   EE GDV +TDP+ LKWPPKPG           SWYDSPPEGF+L
Sbjct: 420  GVIILPPPHEVDEAKHEEIGDVTDTDPVLLKWPPKPGFSNADLFDSEDSWYDSPPEGFSL 479

Query: 1065 TLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGRSSEIKQT 886
            TLSPFSTMFMALF+W++SSSLAYIYGKEESFHEEY+SVNGREYP K+VMPDGRSSEIKQT
Sbjct: 480  TLSPFSTMFMALFAWITSSSLAYIYGKEESFHEEYISVNGREYPHKVVMPDGRSSEIKQT 539

Query: 885  LAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAIVLLFLDA 706
            LAGCLARALPGLVAELRLPIP+ST+EQGMGRLLDTMSFIDPLPAFRMKQW  IVLLFLDA
Sbjct: 540  LAGCLARALPGLVAELRLPIPMSTIEQGMGRLLDTMSFIDPLPAFRMKQWQVIVLLFLDA 599

Query: 705  LSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQFSTQSGG 538
            LSVSRIPALTPY+M RRILLPKV+EGAQISAEEFEIMKDLIIPLGRVPQFSTQSGG
Sbjct: 600  LSVSRIPALTPYLMGRRILLPKVLEGAQISAEEFEIMKDLIIPLGRVPQFSTQSGG 655


>ref|XP_011087530.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Sesamum indicum]
          Length = 687

 Score =  945 bits (2442), Expect = 0.0
 Identities = 500/662 (75%), Positives = 551/662 (83%), Gaps = 11/662 (1%)
 Frame = -2

Query: 2490 LEGNSKKMTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIAN 2311
            +  ++ +M KDEVLTVKDAVHKLQLSLL+GI +ENQL+AAGSLI RSDYQDVVTERTI N
Sbjct: 38   VRNSNLEMKKDEVLTVKDAVHKLQLSLLEGINNENQLSAAGSLICRSDYQDVVTERTIIN 97

Query: 2310 VCGYPLCGNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERS 2131
            +CGYPLC NSL +ERP KGRYRISLKEHKVYDLQETY+YCSSSCLINSRAFAASLQEERS
Sbjct: 98   MCGYPLCSNSLPSERPRKGRYRISLKEHKVYDLQETYLYCSSSCLINSRAFAASLQEERS 157

Query: 2130 STLNPAKLNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSN 1951
            S+LNPA LNEVLKLFDGLSLDS V+MG NGDLGLS LKI+EKTDT AG+V+LEEWIGPSN
Sbjct: 158  SSLNPATLNEVLKLFDGLSLDSAVDMG-NGDLGLSELKIEEKTDTEAGEVSLEEWIGPSN 216

Query: 1950 AIDGYVPRRDRDLKHPQSNN-NKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEY 1774
            AIDGYVPR +R+LK  QS+N  KG R+E             DILS D+NFTSTIITQDEY
Sbjct: 217  AIDGYVPRNERNLKPKQSSNLKKGARQE-----------QVDILSSDLNFTSTIITQDEY 265

Query: 1773 SISKTVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETRSK--NKSKNVITKDDK 1600
            SISK+VP VK KE KGK S  +VN Q N ++KP APL N+QET+SK  +K K+V   DDK
Sbjct: 266  SISKSVPLVKDKESKGKVSINDVNSQGNQMEKPDAPLPNVQETKSKKSDKHKHVTKTDDK 325

Query: 1599 LSLLENIAGPSQNDSTKAVKELQ---ESTAGAXXXXXXXXXXXK--ATRSVTWADEKTDG 1435
            LS+LE  AGPSQND TK     +   E  +GA              ATRSVTWAD KTDG
Sbjct: 326  LSILEAAAGPSQNDLTKEENGHRLGKECASGATILKSSLKTSDSKKATRSVTWADAKTDG 385

Query: 1434 DGQNLNECRELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEAS 1255
            DGQNL E RE+KD KGA+VTSHSAD+EVG+ESYR ASAEACA AL+QAAE VA+G+ + S
Sbjct: 386  DGQNLCEFREVKDGKGALVTSHSADQEVGDESYRIASAEACARALSQAAEAVATGQHDVS 445

Query: 1254 DAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDSP 1084
            DAVSEAGVIILPPPH  DE   EE GDV +TDP+ LKWPPKPG           SWYDSP
Sbjct: 446  DAVSEAGVIILPPPHEVDEAKHEEIGDVTDTDPVLLKWPPKPGFSNADLFDSEDSWYDSP 505

Query: 1083 PEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGRS 904
            PEGF+LTLSPFSTMFMALF+W++SSSLAYIYGKEESFHEEY+SVNGREYP K+VMPDGRS
Sbjct: 506  PEGFSLTLSPFSTMFMALFAWITSSSLAYIYGKEESFHEEYISVNGREYPHKVVMPDGRS 565

Query: 903  SEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAIV 724
            SEIKQTLAGCLARALPGLVAELRLPIP+ST+EQGMGRLLDTMSFIDPLPAFRMKQW  IV
Sbjct: 566  SEIKQTLAGCLARALPGLVAELRLPIPMSTIEQGMGRLLDTMSFIDPLPAFRMKQWQVIV 625

Query: 723  LLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQFSTQS 544
            LLFLDALSVSRIPALTPY+M RRILLPKV+EGAQISAEEFEIMKDLIIPLGRVPQFSTQS
Sbjct: 626  LLFLDALSVSRIPALTPYLMGRRILLPKVLEGAQISAEEFEIMKDLIIPLGRVPQFSTQS 685

Query: 543  GG 538
            GG
Sbjct: 686  GG 687


>ref|XP_012859052.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Erythranthe guttata]
            gi|604299511|gb|EYU19406.1| hypothetical protein
            MIMGU_mgv1a003240mg [Erythranthe guttata]
          Length = 597

 Score =  816 bits (2108), Expect = 0.0
 Identities = 425/648 (65%), Positives = 501/648 (77%), Gaps = 4/648 (0%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M   ++L VKDAVHKLQLSLL+GIKHE+QL AAGSLIS+SDYQDVVTERTIA+VCGYPLC
Sbjct: 1    MKDGKILGVKDAVHKLQLSLLEGIKHESQLIAAGSLISQSDYQDVVTERTIAHVCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +E P KG YRISLKEHKVYDL ET+MYCS+ CLI SRAF ASL+EERSS+L+PAK
Sbjct: 61   VNSLPSEPPRKGHYRISLKEHKVYDLHETHMYCSTECLIRSRAFGASLEEERSSSLDPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            +N VLK+FDGLSLDS + + K+GDLGLSGLKI+EK  T +G+++LEEW+GPSNAIDGYVP
Sbjct: 121  INSVLKMFDGLSLDSVMGLDKSGDLGLSGLKIREKMVTGSGEMSLEEWVGPSNAIDGYVP 180

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISKT-VP 1753
            RRD++ +  Q +  K E         H +PN AD L +D+NFTSTII QDEYS+SKT VP
Sbjct: 181  RRDQNSERKQPSRKKTESN-------HAKPNLADTLPFDVNFTSTIIMQDEYSVSKTAVP 233

Query: 1752 AVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETRSKNKSKNVITKDDKLSLLENIAG 1573
                +E KGK   K + +                             K +K+S+L++ AG
Sbjct: 234  ----REAKGKVKGKMIRKS---------------------------VKAEKISVLDDTAG 262

Query: 1572 PSQNDSTKAVKELQESTAGAXXXXXXXXXXXKATRSVTWADEKTDGDGQNLNECRELKDK 1393
            PSQND+T     L+   +             K TRSVTWADEK+DGDG++++ECRE+ D 
Sbjct: 263  PSQNDTTLLKSSLKTLDS------------KKETRSVTWADEKSDGDGKSISECREIGDN 310

Query: 1392 KGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEASDAVSEAGVIILPPP 1213
            KGAVV  H  DE+VG+ESYRF SAEACA AL+QA+E VASGK++ASDAVSEAGVIILPPP
Sbjct: 311  KGAVVMPHLTDEDVGDESYRFTSAEACARALSQASEAVASGKTDASDAVSEAGVIILPPP 370

Query: 1212 HGEDE---EENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDSPPEGFNLTLSPFSTM 1042
            H  DE   E+ G+V++ DP++LKWPPKPG           SWYDSPPEGFNLTLSPFSTM
Sbjct: 371  HEVDEAKYEQIGEVVDVDPIELKWPPKPGFSSEDLFDSEDSWYDSPPEGFNLTLSPFSTM 430

Query: 1041 FMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGRSSEIKQTLAGCLARA 862
            FM+LF+W+SSSSLAYIYGKEE FHE+YLS+NGREYP KI++ DGRS+E+K TLAGCLARA
Sbjct: 431  FMSLFAWISSSSLAYIYGKEERFHEDYLSINGREYPPKIII-DGRSAEVKHTLAGCLARA 489

Query: 861  LPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAIVLLFLDALSVSRIPA 682
            LPGLV+E+R+P PVST+EQGMGRLLDTMSF D LP FRMKQW  I LLFLDALSVSRIPA
Sbjct: 490  LPGLVSEIRIPTPVSTIEQGMGRLLDTMSFTDALPGFRMKQWQVIALLFLDALSVSRIPA 549

Query: 681  LTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQFSTQSGG 538
            L+PYM  RRILLPKV+EGAQI+ EEFEIMKDLIIPLGRVPQFSTQSGG
Sbjct: 550  LSPYMTGRRILLPKVLEGAQINVEEFEIMKDLIIPLGRVPQFSTQSGG 597


>emb|CAN62034.1| hypothetical protein VITISV_014731 [Vitis vinifera]
          Length = 659

 Score =  715 bits (1845), Expect = 0.0
 Identities = 391/669 (58%), Positives = 487/669 (72%), Gaps = 25/669 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M  D+ + VKDAVHKLQL LL+GI++ENQL AAGSL+SRSDY+DVVTERTIAN+CGYPLC
Sbjct: 1    MAGDQPIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCSS C++NSR+FA SLQEER S LN  +
Sbjct: 61   SNSLPSERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFAGSLQEERCSVLNSER 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            +N +L+LF   SL+S+  +GK+GDLGLS LKI+E  +  AG+V++E+WIGPSNAI+GYVP
Sbjct: 121  INGILRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVP 180

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK---- 1762
            +RDR+LK     N+K   +   SK      +  + +  +M+F STIIT+DEYSISK    
Sbjct: 181  QRDRNLKPKNIKNHKEGSKSSNSK----MDSGKNFVIDEMDFVSTIITKDEYSISKSSKG 236

Query: 1761 ---TVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETR---SKNKSKNVITKDDK 1600
               T    K+KEPK KAS   +  Q + ++K   P+ N  E++   SK +   VI KD+ 
Sbjct: 237  LKDTTSHAKSKEPKEKAS---IGDQLSMLEKSAPPIQNDSESKLRESKGRRSRVIFKDE- 292

Query: 1599 LSLLENIAGPSQNDS----TKAVKELQESTAGAXXXXXXXXXXXKA-----TRSVTWADE 1447
             S  E  + PSQ+ S     K  +E     A              +      RSVTWADE
Sbjct: 293  FSTAEVPSVPSQSGSELNGVKGKEEYHTENAAQLGPTKPKSSLKPSGGKKVIRSVTWADE 352

Query: 1446 KTDG-DGQNLNECRELKDKKGAVVTSHSADEEVGEE--SYRFASAEACAMALTQAAEEVA 1276
            K D  D ++  + REL+ KK     +   D +VG++  + RFASAEACA+AL+QAAE VA
Sbjct: 353  KMDSADSRDFCKVRELEVKKED--PNGLGDIDVGDDDNALRFASAEACAVALSQAAEAVA 410

Query: 1275 SGKSEASDAVSEAGVIILPPPHGEDEEEN---GDVMETDPLQLKWPPKPGXXXXXXXXXX 1105
            SG+++ +DAVSEAG+IILP P   DE E+    D++E +P+ LKWP KPG          
Sbjct: 411  SGETDMTDAVSEAGIIILPHPRDMDEGESLKDADLLEPEPVPLKWPIKPGISHSDIFDSD 470

Query: 1104 XSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKI 925
             SWYD+PPEGF+LTLSPF+TM+MALF+W++SSS+AYIYG++ESFHEEYLSVNGREYP+KI
Sbjct: 471  DSWYDTPPEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKI 530

Query: 924  VMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRM 745
            V+ DGRSSEIKQTLAGCL+RALPGLVA+LRLPIPVS LEQG+GRLLDTMSF+D LP+FRM
Sbjct: 531  VLTDGRSSEIKQTLAGCLSRALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRM 590

Query: 744  KQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRV 565
            KQW  IVLLF+DALSV RIPALTP+M  RR+L PKV + AQ+SAEE+E+MKDLIIPLGRV
Sbjct: 591  KQWQVIVLLFIDALSVCRIPALTPHMTSRRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRV 650

Query: 564  PQFSTQSGG 538
            PQFS QSGG
Sbjct: 651  PQFSAQSGG 659


>ref|XP_002280625.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Vitis vinifera]
            gi|731415977|ref|XP_010659731.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Vitis vinifera] gi|731415979|ref|XP_010659732.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Vitis vinifera]
            gi|296089830|emb|CBI39649.3| unnamed protein product
            [Vitis vinifera]
          Length = 659

 Score =  711 bits (1836), Expect = 0.0
 Identities = 389/669 (58%), Positives = 486/669 (72%), Gaps = 25/669 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M  D+ + VKDAVHKLQL LL+GI++ENQL AAGSL+SRSDY+DVVTERTIAN+CGYPLC
Sbjct: 1    MAGDQPIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCSS C++NSR+FA SLQEER S LN  +
Sbjct: 61   SNSLPSERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFAGSLQEERCSVLNSER 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            +N +L+LF   SL+S+  +GK+GDLGLS LKI+E  +  AG+V++E+WIGPSNAI+GYVP
Sbjct: 121  INGILRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVP 180

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK---- 1762
            +RDR+LK     N K   +   SK      +  + +  +M+F  TIIT+DEYSISK    
Sbjct: 181  QRDRNLKPKNIKNRKEGSKSSNSK----MDSGKNFVIDEMDFVRTIITEDEYSISKSSKG 236

Query: 1761 ---TVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETR---SKNKSKNVITKDDK 1600
               T    K+KEPK KAS   +  Q + ++K   P+ N  E++   SK +   VI KD+ 
Sbjct: 237  LKDTTSHAKSKEPKEKAS---IGDQLSMLEKSAPPIQNDSESKLRESKGRRSRVIFKDE- 292

Query: 1599 LSLLENIAGPSQNDS----TKAVKELQESTAGAXXXXXXXXXXXKA-----TRSVTWADE 1447
             S  E  + PSQ+ S     K  +E     A              +     TRSVTWADE
Sbjct: 293  FSTAEVPSVPSQSGSELNGVKGKEEYHTENAAQLGPTKLKSCLKPSGGKKVTRSVTWADE 352

Query: 1446 KTDG-DGQNLNECRELKDKKGAVVTSHSADEEVGEE--SYRFASAEACAMALTQAAEEVA 1276
            K D  D ++  + REL+ KK     +   D +VG++  + RFASAEACA+AL+QAAE VA
Sbjct: 353  KMDSADSRDFCKVRELEVKKED--PNGLGDIDVGDDDNALRFASAEACAIALSQAAEAVA 410

Query: 1275 SGKSEASDAVSEAGVIILPPPHGEDEEEN---GDVMETDPLQLKWPPKPGXXXXXXXXXX 1105
            SG+++ +DAVSEA +IILP P   DE E+    D++E +P+ LKWP KPG          
Sbjct: 411  SGETDMTDAVSEARIIILPHPRDMDEGESLKDADLLEPEPVPLKWPIKPGISHSDIFDSD 470

Query: 1104 XSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKI 925
             SWYD+PPEGF+LTLSPF+TM+MALF+W++SSS+AYIYG++ESFHEEYLSVNGREYP+KI
Sbjct: 471  DSWYDTPPEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKI 530

Query: 924  VMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRM 745
            V+ DGRSSEIKQTLAGCLARALPGLVA+LRLPIPVS LEQG+GRLLDTMSF+D LP+FRM
Sbjct: 531  VLTDGRSSEIKQTLAGCLARALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRM 590

Query: 744  KQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRV 565
            KQW  IVLLF+DALSV +IPALTP+M+ +R+L PKV + AQ+SAEE+E+MKDLIIPLGRV
Sbjct: 591  KQWQVIVLLFIDALSVCQIPALTPHMISKRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRV 650

Query: 564  PQFSTQSGG 538
            PQFS QSGG
Sbjct: 651  PQFSAQSGG 659


>ref|XP_009771014.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Nicotiana sylvestris]
            gi|698557405|ref|XP_009771015.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana sylvestris]
          Length = 664

 Score =  699 bits (1805), Expect = 0.0
 Identities = 390/670 (58%), Positives = 472/670 (70%), Gaps = 26/670 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M  +EV+ VKDA+HKLQL LL+GIK ENQL AAGSL+SR DYQDVVTER+IAN+CGYPLC
Sbjct: 1    MANEEVIAVKDAIHKLQLYLLEGIKDENQLFAAGSLLSRRDYQDVVTERSIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ERP  G YRISLKEHKVYDL ETYMYCS++C +NS AFA SLQ+ERSSTLN AK
Sbjct: 61   SNSLPSERPRNGHYRISLKEHKVYDLHETYMYCSTNCAVNSGAFARSLQDERSSTLNTAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LNEVLKLF GL L S  ++ ++GDLGLS LKIQEK D   G+V++EEW+GPS+AI+GYVP
Sbjct: 121  LNEVLKLFVGLHLHSTEDVKESGDLGLSKLKIQEKVDVKGGEVSMEEWMGPSDAIEGYVP 180

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK---- 1762
            +R+R+LK    NN K   +   +K +    N  +++ ++M+F+STIITQD YSISK    
Sbjct: 181  QRERNLKPALLNNIKKSSKNKQAKLQ----NEKNMILHEMDFSSTIITQDGYSISKLPAP 236

Query: 1761 --TVPAVKAKEPKGKASS--KEVNRQSNPVQKPTAPLTNIQETRSKNKSKNVITKDDKLS 1594
               V + K KE + + S   ++V+      Q     L + +ET  K  S N   K DK +
Sbjct: 237  VNAVSSKKVKEAQTRTSYEVRDVDVSILGKQVDALQLHSGEETE-KTDSNNRSYKVDKFN 295

Query: 1593 LLENIAGPSQND-STKAVKELQESTAG------------AXXXXXXXXXXXKATRSVTWA 1453
              E  +GP Q+D   K+++ L  S AG            +           K  RSVTWA
Sbjct: 296  TGEVSSGPCQHDVKNKSLEVLNMSDAGREYASDDAREKQSLRSSLKSSKYKKMARSVTWA 355

Query: 1452 DEKTDGDGQNLNECRELKDKKGAVVTSHSA--DEEVGEESYRFASAEACAMALTQAAEEV 1279
            DE  D     L E      +KG      S   + E  ++SYRF SAEACA AL QAAE V
Sbjct: 356  DENVDNGTGKLTESSSEISEKGDQANRESGPTNMEEDDDSYRFESAEACAAALKQAAEAV 415

Query: 1278 ASGKSEASDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXXXXXX 1108
            ASG S+  DAVS AG+IILPPP   DE   +EN +V++ +P  LKWP KPG         
Sbjct: 416  ASG-SDVPDAVSTAGIIILPPPKEVDEAVLKENDEVLDIEPAPLKWPRKPGVPNYDVFES 474

Query: 1107 XXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQK 928
              SWYDSPPEGFNL LSPFSTMF +LF+W+SSSSL++IYG +ESF+EEYLSVNG EYP+K
Sbjct: 475  EDSWYDSPPEGFNLNLSPFSTMFNSLFTWISSSSLSFIYGNDESFNEEYLSVNGSEYPRK 534

Query: 927  IVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFR 748
            IV+ DGRS+EIKQTLA CLARALPGLVA+LRLP+P+S LEQG+  L+DTMSF+DPLPAFR
Sbjct: 535  IVLSDGRSTEIKQTLARCLARALPGLVADLRLPVPISVLEQGLVLLIDTMSFVDPLPAFR 594

Query: 747  MKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGR 568
            MKQW  IVLLFLDALS+ RIP LTPYM  RR LLPKV++GAQISA E+EI+KDLIIPLGR
Sbjct: 595  MKQWQLIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAQISAAEYEILKDLIIPLGR 654

Query: 567  VPQFSTQSGG 538
            VPQFS QSGG
Sbjct: 655  VPQFSMQSGG 664


>ref|XP_015063149.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Solanum pennellii]
            gi|970004692|ref|XP_015063150.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Solanum pennellii] gi|970004694|ref|XP_015063151.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Solanum pennellii]
          Length = 660

 Score =  692 bits (1786), Expect = 0.0
 Identities = 390/674 (57%), Positives = 473/674 (70%), Gaps = 30/674 (4%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M K E + VKDAVHKLQL LLDGIK E+QL AAGSL+SRSDYQDVVTER+IAN+CGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLDGIKDESQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCS++C++NS AFA SLQ+ERSSTLNPAK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LN+VL LF GL L S  N+ +NGDLG S LKIQEK D   G+V+LEEW+GPSNAI+GY+P
Sbjct: 121  LNQVLNLFKGLHLHSADNVKENGDLGSSKLKIQEKVDLKGGEVSLEEWMGPSNAIEGYIP 180

Query: 1929 RRDRDLKHPQSNN-NKGERREVGSKHRHVR-PNAADILSYDMNFTSTIITQDEYSISKTV 1756
            +RDR +      N NKG      SK++H R  +  +++  + +F+STIITQDEYS+SK  
Sbjct: 181  QRDRSVNPALLKNINKG------SKNKHARLQDEKNMILNEFDFSSTIITQDEYSVSK-F 233

Query: 1755 PA-------VKAKEPKGKASSKE-------VNRQSNPVQKPTAPLTNIQETRSKNKSKNV 1618
            PA       VK KE + K   K        + +Q + +Q     L + +ET   +K+   
Sbjct: 234  PAPVNADSSVKFKETQAKTRYKVRDDDVYILGKQVDALQ-----LRSGEETEKSDKNTRF 288

Query: 1617 ITKDDKLSLLENIAGPSQND---------STKAVKELQESTAGAXXXXXXXXXXXKATRS 1465
            + K DK +  E  +GPSQ+D         S    K                    K +RS
Sbjct: 289  L-KVDKFNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKLKSSLKSSNSKKMSRS 347

Query: 1464 VTWADEKTDGD-GQNLNECRELKDKKGAVVT-SHSADEEVGEESYRFASAEACAMALTQA 1291
            VTWADE  DG  G+      ++ + +      S S D E  ++SYRF SAEACA AL+QA
Sbjct: 348  VTWADESIDGGIGKKTESSSKISEYESQDYGGSASTDMEENDDSYRFESAEACAAALSQA 407

Query: 1290 AEEVASGKSEASDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXX 1120
            AE VASG S+  DAVS+AG++ILPP    DE   +E  ++++ +   LKWP KPG     
Sbjct: 408  AEAVASG-SDVPDAVSKAGIVILPPSQEVDEAILQETDEMLDLETAPLKWPRKPGMPNYD 466

Query: 1119 XXXXXXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGRE 940
                  SWYDSPPEGFN+TLSPF+TMF +LF+W+SSSSLA+IYG +ES +EEYLS+NGRE
Sbjct: 467  VFESEDSWYDSPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGRE 526

Query: 939  YPQKIVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPL 760
            YP+KIV+ DGRS+EIKQTLAGCLARALPGLVA+LRLP+P+STLEQGM  LL+TMSF+DPL
Sbjct: 527  YPRKIVLSDGRSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPL 586

Query: 759  PAFRMKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLII 580
            PAFRMKQW  IVLLFLDALSV RIP LTPYM  RR   PKV++GAQISA E+EIMKDLII
Sbjct: 587  PAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLII 646

Query: 579  PLGRVPQFSTQSGG 538
            PLGRVPQFS QSGG
Sbjct: 647  PLGRVPQFSMQSGG 660


>ref|XP_004230345.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Solanum lycopersicum]
          Length = 660

 Score =  687 bits (1774), Expect = 0.0
 Identities = 389/674 (57%), Positives = 472/674 (70%), Gaps = 30/674 (4%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M K E + VKDAVHKLQL LL+GIK E+QL AAGSL+SRSDYQDVVTER+IAN+CGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLEGIKDESQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCS++C++NS AFA SLQ+ERSSTLNPAK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LN+VL LF GL L S  ++ +NGD G S LKIQEK D   G+V+LEEW+GPSNAI+GYVP
Sbjct: 121  LNQVLNLFKGLHLHSLDDVKENGDRGSSKLKIQEKVDLKGGEVSLEEWMGPSNAIEGYVP 180

Query: 1929 RRDRDLKHPQSNN-NKGERREVGSKHRHVR-PNAADILSYDMNFTSTIITQDEYSISKTV 1756
            +RDR +      N NKG      SK++H R  +  +++  + +F+STIITQDEYS+SK  
Sbjct: 181  QRDRSVNPALLKNINKG------SKNKHARLQDEKNMILNEFDFSSTIITQDEYSVSK-F 233

Query: 1755 PA-------VKAKEPKGKASSKE-------VNRQSNPVQKPTAPLTNIQETRSKNKSKNV 1618
            PA       VK KE + K   K        + +Q + +Q     L + +ET   +K+   
Sbjct: 234  PAPVNADSNVKFKETQAKTRYKVRDDDVYILGKQVDALQ-----LRSGEETEKSDKNTRF 288

Query: 1617 ITKDDKLSLLENIAGPSQND---------STKAVKELQESTAGAXXXXXXXXXXXKATRS 1465
            + K DK +  E  +GPSQ+D         S    K                    K +RS
Sbjct: 289  L-KVDKFNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKLKSSLKSSNSKKMSRS 347

Query: 1464 VTWADEKTDGD-GQNLNECRELKDKKG-AVVTSHSADEEVGEESYRFASAEACAMALTQA 1291
            VTWADE  DG  G+      ++ + +  A   S S D E  ++SYRF SAEACA AL+QA
Sbjct: 348  VTWADESIDGGIGKKTESSSKISEYESQAYGGSASTDMEENDDSYRFESAEACAAALSQA 407

Query: 1290 AEEVASGKSEASDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXX 1120
            AE VASG S+  DAVS+AG++ILPP    DE   +E  ++++ +   LKWP KPG     
Sbjct: 408  AEAVASG-SDVPDAVSKAGIVILPPSQEVDEAILQETDEMLDLETAPLKWPRKPGMPNYD 466

Query: 1119 XXXXXXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGRE 940
                  SWYDSPPEGFN+TLSPF TMF +LF+W+SSSSLA+IYG +ES +EEYLS+NGRE
Sbjct: 467  VFESEDSWYDSPPEGFNMTLSPFGTMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGRE 526

Query: 939  YPQKIVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPL 760
            YP+KIV+ DGRS+EIKQTLAGCLARALPGLVA+LRLP+P+STLEQGM  LL+TMSF+DPL
Sbjct: 527  YPRKIVLSDGRSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPL 586

Query: 759  PAFRMKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLII 580
            PAFRMKQW  IVLLFLDALSV RIP LTPYM  RR   PKV++GAQISA E+EIMKDLII
Sbjct: 587  PAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLII 646

Query: 579  PLGRVPQFSTQSGG 538
            PLGRVPQFS QSGG
Sbjct: 647  PLGRVPQFSMQSGG 660


>ref|XP_009602820.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Nicotiana tomentosiformis]
            gi|697187566|ref|XP_009602821.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
          Length = 664

 Score =  685 bits (1768), Expect = 0.0
 Identities = 385/677 (56%), Positives = 469/677 (69%), Gaps = 33/677 (4%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M  +EV+ VKDA+HKLQL LL+GIK ENQL AAGSL+SR DYQDVVTERTIAN+CGYPLC
Sbjct: 1    MANEEVIAVKDAIHKLQLCLLEGIKDENQLFAAGSLLSRRDYQDVVTERTIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             N L +ERP KG YRISLKEHKVYDL E YMYCS++C++NS AFA SLQ+ERS TLN AK
Sbjct: 61   SNCLPSERPKKGHYRISLKEHKVYDLHEAYMYCSTNCVVNSGAFARSLQDERSDTLNTAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LNEVLKLF GL L S  ++  NG+LGLS LKIQEK D   G+V+++EW+GPS+AI+GY P
Sbjct: 121  LNEVLKLFVGLHLHSTEDVKDNGELGLSKLKIQEKLDVKGGEVSMDEWMGPSDAIEGYFP 180

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVR-PNAADILSYDMNFTSTIITQDEYSISKTVP 1753
            +RD+ +K    NN K      G K++  +  N  +++  +M+F+STIITQD YSISK +P
Sbjct: 181  QRDQSVKPALLNNIKK-----GFKNKQTKLQNKKNMILNEMDFSSTIITQDGYSISK-LP 234

Query: 1752 AVKAKEPKGKASSKEVNRQSNPV--------------QKPTAPLTNIQETRSKNKSKNVI 1615
            A     P    SSK+VN                    Q     L + +ET  K  S +  
Sbjct: 235  A-----PINVVSSKKVNEAQTKTSYEVGDADVSILGKQVDVLQLYSGEETE-KTDSNDRS 288

Query: 1614 TKDDKLSLLENIAGPSQND-STKAVKELQESTAG------------AXXXXXXXXXXXKA 1474
             K DK +  E  +GP Q+D   K+++ L  S AG            +           K 
Sbjct: 289  YKVDKFNNREVSSGPCQHDVRNKSLEVLNMSDAGREYASDGAREKQSLRSSLKSSNYKKM 348

Query: 1473 TRSVTWADEKTD-GDGQNLNECRELKDKKG-AVVTSHSADEEVGEESYRFASAEACAMAL 1300
             RSVTWADE  D G G+ +    E+ ++   A   S   D E  ++SYRF SAEACA AL
Sbjct: 349  ARSVTWADENIDNGTGKKMECSAEISEEANQAYRGSGPTDMEEDDDSYRFKSAEACAAAL 408

Query: 1299 TQAAEEVASGKSEASDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXX 1129
             QAAE VASG S+  DAVS AG+IILPPP   DE   +EN +V++T+P  LKWP KPG  
Sbjct: 409  KQAAEAVASG-SDVPDAVSHAGIIILPPPQEVDEAILQENDEVLDTEPAPLKWPRKPGVP 467

Query: 1128 XXXXXXXXXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVN 949
                     SWYDSPPEGFNL LSPF+TMF +LF+W+SSSSL++IYG +ES +EEYLS+N
Sbjct: 468  NYDVFESEDSWYDSPPEGFNLNLSPFATMFNSLFTWISSSSLSFIYGNDESSNEEYLSIN 527

Query: 948  GREYPQKIVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFI 769
            GREYP+KIV+ DGRS+EIKQTLA CLARALPGLV +LRLP+P+S LEQG+  L+DTMSF+
Sbjct: 528  GREYPRKIVLSDGRSTEIKQTLARCLARALPGLVTDLRLPVPISVLEQGVVLLIDTMSFV 587

Query: 768  DPLPAFRMKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKD 589
            DPLPAFR+KQW  IVLLFLDALS+ RIP LTPYM  RR LLPKV++GA ISA E+EIMKD
Sbjct: 588  DPLPAFRIKQWQLIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAHISAAEYEIMKD 647

Query: 588  LIIPLGRVPQFSTQSGG 538
            L+IPLGRVPQFS QSGG
Sbjct: 648  LVIPLGRVPQFSMQSGG 664


>ref|XP_009629188.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Nicotiana tomentosiformis]
            gi|697149962|ref|XP_009629189.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
            gi|697149964|ref|XP_009629190.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
            gi|697149966|ref|XP_009629192.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
            gi|697149968|ref|XP_009629193.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
          Length = 680

 Score =  682 bits (1759), Expect = 0.0
 Identities = 384/675 (56%), Positives = 467/675 (69%), Gaps = 26/675 (3%)
 Frame = -2

Query: 2484 GNSKKMTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVC 2305
            G S  M  +EV+ VKDA+HKLQL LL+GIK ENQL AAGSL+SR DYQDVVTER+I N+C
Sbjct: 12   GKSSLMANEEVIAVKDAIHKLQLCLLEGIKDENQLFAAGSLLSRRDYQDVVTERSIVNMC 71

Query: 2304 GYPLCGNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSST 2125
            GYPLC NSL +ERP KG YRISLKEHKVYDL ETY YCS++C++NS AFA SLQ+ERS+T
Sbjct: 72   GYPLCSNSLPSERPSKGHYRISLKEHKVYDLHETYTYCSTNCVVNSGAFARSLQDERSTT 131

Query: 2124 LNPAKLNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAI 1945
            LN AKLNEVLKLF GL L S  ++ +NGDLGLS LKIQEK D   G+V++EEW+GPS+AI
Sbjct: 132  LNTAKLNEVLKLFVGLHLHSIEDVKENGDLGLSKLKIQEKLDVKGGEVSMEEWMGPSDAI 191

Query: 1944 DGYVPRRDRDLKHPQSNNNKGERREVGSKHRHVR-PNAADILSYDMNFTSTIITQDEYSI 1768
            +GYVP+RDR +K    NN K      G K++  +  N  +++  +M+F+STIITQD YS 
Sbjct: 192  EGYVPQRDRSVKPALLNNIKK-----GFKNKQTKLQNEKNMILNEMDFSSTIITQDGYSS 246

Query: 1767 SK------TVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLT-NIQETRSKNKSKNVITK 1609
            SK       V + K KE + K S +  +   + + K    L  +  E   K  S +   K
Sbjct: 247  SKLPVSVNVVSSKKVKEAQTKTSYEGRDADVSILGKQVDALQLHSGEETEKTDSNDRSYK 306

Query: 1608 DDKLSLLENIAGPSQNDSTK-AVKELQESTAG------------AXXXXXXXXXXXKATR 1468
             DK    E  +GP Q+D    +++ L  S AG            +           K TR
Sbjct: 307  VDKFDNGEVSSGPCQHDVKNISLEVLDMSDAGREHASDGAREKQSLRSSLKSSNYTKMTR 366

Query: 1467 SVTWADEKTDGDGQNLNECRE--LKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQ 1294
            SVTWADE  D       EC     ++   A   S   D E  ++SYRF SAEACA AL Q
Sbjct: 367  SVTWADENIDNGTVKKMECSSEISEEADQAYRGSGPTDMEEVDDSYRFESAEACAAALKQ 426

Query: 1293 AAEEVASGKSEASDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXX 1123
            AA+ VASG S+  DAVS AG+IILPPP   D+   +EN +V++T P  LKWP K G    
Sbjct: 427  AAKAVASG-SDVPDAVSNAGIIILPPPQEVDKAILQENDEVLDTKPAPLKWPRKQGVPNY 485

Query: 1122 XXXXXXXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGR 943
                   SWYDSPPEGFNL LSPF+TMF +LF+W+SSSSL++IYG +ES +EEYLS+NGR
Sbjct: 486  DVFESEDSWYDSPPEGFNLNLSPFATMFNSLFTWISSSSLSFIYGNDESSNEEYLSINGR 545

Query: 942  EYPQKIVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDP 763
            EYP+KIV+ DGRS+EIKQTLA CLARALP LVA+LRLP+P+S LEQG+  L+DTMSF+DP
Sbjct: 546  EYPRKIVLSDGRSTEIKQTLARCLARALPELVADLRLPVPISVLEQGVVLLIDTMSFVDP 605

Query: 762  LPAFRMKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLI 583
            LPAFR+KQW  IVLLFLDALS+ RIP LTPYM  RR LLPKV++GAQISA E+EIMKDLI
Sbjct: 606  LPAFRIKQWQLIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAQISAVEYEIMKDLI 665

Query: 582  IPLGRVPQFSTQSGG 538
            IPLGRVPQFS QSGG
Sbjct: 666  IPLGRVPQFSMQSGG 680


>ref|XP_009629194.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Nicotiana tomentosiformis]
            gi|697149972|ref|XP_009629195.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X2 [Nicotiana tomentosiformis]
            gi|697149974|ref|XP_009629196.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X2 [Nicotiana tomentosiformis]
            gi|697149976|ref|XP_009629197.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X2 [Nicotiana tomentosiformis]
          Length = 664

 Score =  679 bits (1751), Expect = 0.0
 Identities = 382/670 (57%), Positives = 465/670 (69%), Gaps = 26/670 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M  +EV+ VKDA+HKLQL LL+GIK ENQL AAGSL+SR DYQDVVTER+I N+CGYPLC
Sbjct: 1    MANEEVIAVKDAIHKLQLCLLEGIKDENQLFAAGSLLSRRDYQDVVTERSIVNMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ERP KG YRISLKEHKVYDL ETY YCS++C++NS AFA SLQ+ERS+TLN AK
Sbjct: 61   SNSLPSERPSKGHYRISLKEHKVYDLHETYTYCSTNCVVNSGAFARSLQDERSTTLNTAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LNEVLKLF GL L S  ++ +NGDLGLS LKIQEK D   G+V++EEW+GPS+AI+GYVP
Sbjct: 121  LNEVLKLFVGLHLHSIEDVKENGDLGLSKLKIQEKLDVKGGEVSMEEWMGPSDAIEGYVP 180

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVR-PNAADILSYDMNFTSTIITQDEYSISK--- 1762
            +RDR +K    NN K      G K++  +  N  +++  +M+F+STIITQD YS SK   
Sbjct: 181  QRDRSVKPALLNNIKK-----GFKNKQTKLQNEKNMILNEMDFSSTIITQDGYSSSKLPV 235

Query: 1761 ---TVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLT-NIQETRSKNKSKNVITKDDKLS 1594
                V + K KE + K S +  +   + + K    L  +  E   K  S +   K DK  
Sbjct: 236  SVNVVSSKKVKEAQTKTSYEGRDADVSILGKQVDALQLHSGEETEKTDSNDRSYKVDKFD 295

Query: 1593 LLENIAGPSQNDSTK-AVKELQESTAG------------AXXXXXXXXXXXKATRSVTWA 1453
              E  +GP Q+D    +++ L  S AG            +           K TRSVTWA
Sbjct: 296  NGEVSSGPCQHDVKNISLEVLDMSDAGREHASDGAREKQSLRSSLKSSNYTKMTRSVTWA 355

Query: 1452 DEKTDGDGQNLNECRE--LKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEV 1279
            DE  D       EC     ++   A   S   D E  ++SYRF SAEACA AL QAA+ V
Sbjct: 356  DENIDNGTVKKMECSSEISEEADQAYRGSGPTDMEEVDDSYRFESAEACAAALKQAAKAV 415

Query: 1278 ASGKSEASDAVSEAGVIILPPPHGEDE---EENGDVMETDPLQLKWPPKPGXXXXXXXXX 1108
            ASG S+  DAVS AG+IILPPP   D+   +EN +V++T P  LKWP K G         
Sbjct: 416  ASG-SDVPDAVSNAGIIILPPPQEVDKAILQENDEVLDTKPAPLKWPRKQGVPNYDVFES 474

Query: 1107 XXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQK 928
              SWYDSPPEGFNL LSPF+TMF +LF+W+SSSSL++IYG +ES +EEYLS+NGREYP+K
Sbjct: 475  EDSWYDSPPEGFNLNLSPFATMFNSLFTWISSSSLSFIYGNDESSNEEYLSINGREYPRK 534

Query: 927  IVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFR 748
            IV+ DGRS+EIKQTLA CLARALP LVA+LRLP+P+S LEQG+  L+DTMSF+DPLPAFR
Sbjct: 535  IVLSDGRSTEIKQTLARCLARALPELVADLRLPVPISVLEQGVVLLIDTMSFVDPLPAFR 594

Query: 747  MKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGR 568
            +KQW  IVLLFLDALS+ RIP LTPYM  RR LLPKV++GAQISA E+EIMKDLIIPLGR
Sbjct: 595  IKQWQLIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAQISAVEYEIMKDLIIPLGR 654

Query: 567  VPQFSTQSGG 538
            VPQFS QSGG
Sbjct: 655  VPQFSMQSGG 664


>ref|XP_012072543.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Jatropha curcas]
            gi|802599693|ref|XP_012072544.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Jatropha curcas] gi|802599695|ref|XP_012072546.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Jatropha curcas]
            gi|643730423|gb|KDP37902.1| hypothetical protein
            JCGZ_05341 [Jatropha curcas]
          Length = 654

 Score =  678 bits (1750), Expect = 0.0
 Identities = 370/658 (56%), Positives = 461/658 (70%), Gaps = 21/658 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M KD+ ++VKD VHKLQLSLL+GIK+E+QL  AGSL+SRSDY+DVVTER+IAN+CGYPLC
Sbjct: 1    MAKDQSISVKDTVHKLQLSLLEGIKNEDQLFTAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL  +RP+KGRYRISLKEHKVYDL ETYMYCSSSC++NSRAFA SLQEER S LNP K
Sbjct: 61   NNSLPLDRPYKGRYRISLKEHKVYDLHETYMYCSSSCIVNSRAFAGSLQEERCSVLNPMK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            L+E+L++F+ LSLDS  N+ +NGDLGLS LKIQEK ++  G+V+LEEWIGPSNAI+GYVP
Sbjct: 121  LDEILRMFNNLSLDSK-NLVENGDLGLSNLKIQEKIESNVGEVSLEEWIGPSNAIEGYVP 179

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK---- 1762
            +RDRD K     N K   + + +K      N  +    DM+F STIIT+DEYSISK    
Sbjct: 180  QRDRDFKGSSFKNPKEASKAISTKP----VNKQECFFNDMDFMSTIITKDEYSISKAPSG 235

Query: 1761 ---TVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQET--RSKNKSKNVITKDDKL 1597
               T   +K +E +GK + K    QS+   K     T+ +    RSK   K  ++  D L
Sbjct: 236  SISTGSDMKLQEQRGKETHKGSEAQSSSPGKHAFVKTSRKSKGGRSKQIIKEELSDKDLL 295

Query: 1596 SLLE--------NIAGPSQNDSTKAVKELQESTAGAXXXXXXXXXXXKATRSVTWADEKT 1441
            S           N A P +    K    L ES               K+  SVTWADEK 
Sbjct: 296  SASNYSQTGSSMNNAEPEEKSGAKQAANLSESML---KPSLKPSGAKKSVHSVTWADEKF 352

Query: 1440 DG-DGQNLNECRELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKS 1264
            D    +NL E RE++D K  +    S +    +   RF SAEACA+AL+QAAE VASG +
Sbjct: 353  DNAKSRNLCEVREMEDTKSGLEILDSLENN-NDNMLRFESAEACAIALSQAAEAVASGDA 411

Query: 1263 EASDAVSEAGVIILPPPHG---EDEEENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWY 1093
            + +DA+SEAGVI+LP PH     D  +  D++E +   LKWP KP            SWY
Sbjct: 412  DVNDAMSEAGVIVLPQPHHLAPGDSTDIADMLERESASLKWPAKPAVEQSDLFDSEDSWY 471

Query: 1092 DSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPD 913
            D+PPEGF+L LSPF+TM+MALF+WV+SSSLA+IYG++E+ HE+YLSVNGREYPQKIV+ D
Sbjct: 472  DAPPEGFSLMLSPFATMWMALFAWVTSSSLAFIYGRDETAHEDYLSVNGREYPQKIVLRD 531

Query: 912  GRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWH 733
            GRSSEIK T+ GCL+RA PG+VA+LRLPIP+STLEQG GRLLDTMSF+D LP FRMKQW 
Sbjct: 532  GRSSEIKLTVEGCLSRAFPGVVADLRLPIPISTLEQGAGRLLDTMSFVDALPPFRMKQWQ 591

Query: 732  AIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQ 559
                LF++ALSV RIPALT YM +RR++L +V++GAQISAEE+E+MKDL+IPLGR P+
Sbjct: 592  VTAFLFIEALSVCRIPALTSYMTNRRMVLHQVLDGAQISAEEYEVMKDLMIPLGRDPR 649


>ref|XP_006358558.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Solanum tuberosum]
          Length = 662

 Score =  676 bits (1745), Expect = 0.0
 Identities = 383/669 (57%), Positives = 468/669 (69%), Gaps = 25/669 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M K E + VKDAVHKLQL LL+GIK ENQL AAGSL+SRSDYQDVVTER+IAN+CGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLEGIKDENQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCS++C++NS AFA SLQ+ERSSTLNPAK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAG-QVALEEWIGPSNAIDGYV 1933
            LN+VL LF GL L S  ++ +NGDLG S LKIQEK D   G +V+LEEW+GPSNAI+GYV
Sbjct: 121  LNQVLNLFKGLHLHSPEDVKENGDLGSSKLKIQEKVDVKGGGEVSLEEWMGPSNAIEGYV 180

Query: 1932 PRRDRDLKHPQSNN-NKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK-- 1762
            P+RDR +      N NKG +    +KH  ++     IL+ + +F+STIITQDEYS+SK  
Sbjct: 181  PQRDRSVNPALLKNINKGFK----NKHARLQDEKNMILN-EFDFSSTIITQDEYSVSKFP 235

Query: 1761 ----TVPAVKAKEPKGKASSKEVNRQSNPVQK--PTAPLTNIQETRSKNKSKNVITKDDK 1600
                 V + K KE + K   K  +   + + K      L + +ET   +K+   + K DK
Sbjct: 236  APVNAVSSEKFKEAQAKTRYKVRDDDVSILGKRVDALQLRSGEETEKSDKNTRFL-KVDK 294

Query: 1599 LSLLENIAGPSQND-STKAVKELQ----------ESTAGAXXXXXXXXXXXKATRSVTWA 1453
             +  E  +GPSQ+D   K+V  +           E                K ++SVTWA
Sbjct: 295  FNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKQLLKSSLKSSNSKKMSQSVTWA 354

Query: 1452 DEKTDGD-GQNLNECRELKDKKG-AVVTSHSADEEVGEESYRFASAEACAMALTQAAEEV 1279
            DE  DG  G+      ++ + +  A   S S D E  ++SYRF SAEACA AL+QAAE V
Sbjct: 355  DEIIDGGIGKKTESSSKISEYENQAYGGSASTDMEEDDDSYRFESAEACAAALSQAAEAV 414

Query: 1278 ASGKSEASDAVSEAGVIILPPPHGEDEE--ENGDVMETDPLQLKWPPKPGXXXXXXXXXX 1105
            ASG S+  DAVS+AG++ILP     DE   +  ++++ +P  LKWP KPG          
Sbjct: 415  ASG-SDVPDAVSKAGIVILPTSQEVDEAILQETEMLDIEPAPLKWPRKPGMPNYDVFESE 473

Query: 1104 XSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKI 925
              WYD PPEGFN+TLSPF+TMF +LF+W+SSSSLA+IYG +E+ +EEYLS+NGREYP KI
Sbjct: 474  DCWYDGPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDENNNEEYLSINGREYPHKI 533

Query: 924  VMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRM 745
            V+ DG S+EIKQTLAGCLARALPGLVA+LRLP+P+STLEQGM  LL+TMSF+DPLPAFRM
Sbjct: 534  VLSDGLSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRM 593

Query: 744  KQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRV 565
            KQW  IVLLFLDALSV RIP LTPYM  RR  LPKV++GAQIS  E+EIMKDLIIPLGRV
Sbjct: 594  KQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSLPKVLDGAQISTAEYEIMKDLIIPLGRV 653

Query: 564  PQFSTQSGG 538
            PQFS QSGG
Sbjct: 654  PQFSMQSGG 662


>gb|KYP49456.1| RNA polymerase II-associated protein 2 [Cajanus cajan]
          Length = 641

 Score =  656 bits (1692), Expect = 0.0
 Identities = 357/653 (54%), Positives = 452/653 (69%), Gaps = 10/653 (1%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M KD+ ++VKDAV KLQ+SLL+GIK+E+ L AAGSL+SRSDY+D+VTER+I NVCGYPLC
Sbjct: 1    MAKDKPVSVKDAVFKLQMSLLEGIKNEDHLFAAGSLMSRSDYEDIVTERSITNVCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             N+L +ERP KGRYRISLKEHKVYDL+ETYMYCSSSC++ S+AFA SL+ ER   L P K
Sbjct: 61   CNALPSERPRKGRYRISLKEHKVYDLEETYMYCSSSCVVKSKAFAGSLKTERCLGLEPEK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LN +L LF  L+L+   N GKNG++G S LKIQEKT+T  G+V+LE+W+GPSNAI+GYVP
Sbjct: 121  LNNILSLFGNLNLEPVKNSGKNGNIGFSDLKIQEKTETSTGEVSLEQWVGPSNAIEGYVP 180

Query: 1929 R-RDRDLKHPQSNNNKGERREVGSKHRHVRPNA-ADILSYDMNFTSTIITQDEYSISKTV 1756
            + RDRD K  + N  KG      SK   ++ N+   +++ +M+F STII QDEYSISK  
Sbjct: 181  KPRDRDSKGSRKNIKKG------SKASRIKSNSDKSLINTEMDFVSTIIMQDEYSISKVS 234

Query: 1755 PAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQE-TRSKNKSKNVITKDDKLSLLENI 1579
            P VK+         K+V+  S   ++        ++  + K ++  V   DD  +   + 
Sbjct: 235  PVVKSSASPA-IKMKDVHSISISERQCDVEWNGSRKLVQLKGETSRVTANDDAST---SN 290

Query: 1578 AGPSQNDSTKAVKELQESTAGAXXXXXXXXXXXKATRSVTWADEKTDGDGQN----LNEC 1411
              P+  +    V++   S               K  RSVTWADEK +  G      + E 
Sbjct: 291  LDPANVEEKFQVEKASGSRKSKPKSSLKSAGEKKLNRSVTWADEKINSTGSRDLCEVKEF 350

Query: 1410 RELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEASDAVSEAGV 1231
             ++++K  +V     AD+E   +  R ASAE CA+AL+QA+E VASG S+ +DAVSEAG+
Sbjct: 351  GDIREKSNSVGNVDVADDE---DILRRASAEVCAIALSQASEAVASGDSDVTDAVSEAGI 407

Query: 1230 IILPPPHGEDEE---ENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDSPPEGFNLTL 1060
            IILP PH   EE   E+ D++E D + LKWP KPG           SW+D PPEGF+LTL
Sbjct: 408  IILPHPHDAVEESTLEDADILENDSVTLKWPRKPGISDVDFFESEDSWFDGPPEGFSLTL 467

Query: 1059 SPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGRSSEIKQTLA 880
            SPF+TM+ ALFSW+SSSSLAYIYG+ ESFHEEYLSVNGREYP KIV+ DGRS EIKQTLA
Sbjct: 468  SPFATMWNALFSWISSSSLAYIYGRGESFHEEYLSVNGREYPCKIVLEDGRSYEIKQTLA 527

Query: 879  GCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAIVLLFLDALS 700
             CL+RALP LVA LRLPIP+STLEQGMG LL+TMSF+D +PAFR KQW  + LLF+DALS
Sbjct: 528  SCLSRALPALVAGLRLPIPISTLEQGMGCLLETMSFVDAIPAFRTKQWQVVSLLFIDALS 587

Query: 699  VSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQFSTQSG 541
            V RIPAL  YM DRR L  KV+ G+QI  EE+EI+K+L++PLGR P  S QSG
Sbjct: 588  VCRIPALISYMTDRRALFHKVLNGSQIGMEEYEILKELVVPLGRAPHISAQSG 640


>ref|XP_002521936.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Ricinus communis]
            gi|1000959295|ref|XP_015576516.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Ricinus communis] gi|223538861|gb|EEF40460.1| conserved
            hypothetical protein [Ricinus communis]
          Length = 645

 Score =  654 bits (1687), Expect = 0.0
 Identities = 359/655 (54%), Positives = 466/655 (71%), Gaps = 18/655 (2%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M K+E ++VKD V+KLQLSLL+GI++E+QL AAGSL+SRSDY+DVV ER+I+N+CGYPLC
Sbjct: 1    MAKEESVSVKDTVYKLQLSLLEGIENEDQLLAAGSLMSRSDYEDVVVERSISNLCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL ++RP+KGRYRISLKEH+VYDLQETYMYCSSSCL+NSRAF+ SLQE+R S LNP K
Sbjct: 61   NNSLPSDRPYKGRYRISLKEHRVYDLQETYMYCSSSCLVNSRAFSESLQEKRCSVLNPIK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LNE+L+ F+ L+LDS+  +G++GDLGLS LKIQEK++T  G+V+LEEWIGPSNAI+GYVP
Sbjct: 121  LNEILRKFNDLTLDSE-GLGRSGDLGLSNLKIQEKSETNVGKVSLEEWIGPSNAIEGYVP 179

Query: 1929 RRDRDLKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK---- 1762
            + DRD  +P   N+K   + +  K      +  D    D +FTSTIIT DEYSISK    
Sbjct: 180  QGDRD-PNPSLKNHKEGLKAICKKP----VSKQDCFFSDTDFTSTIITNDEYSISKGPSG 234

Query: 1761 ---TVPAVKAKEPKGKASSKEVNRQSNPVQKPTAPLTNIQETRSKNKSKNVITKDDKLSL 1591
               T   +K +   GK   + +N Q + ++K  +   +    +SK + K  + K+     
Sbjct: 235  LTSTASDIKLQAQTGKGH-EGLNAQLSSLRKQDSIKAS---RKSKGRRKEKVIKEQ---- 286

Query: 1590 LENIAGPSQNDSTKAVKELQESTAGAXXXXXXXXXXXKAT------RSVTWADEKTDGDG 1429
            L     PS +  T   +++ ++T  A           K++      RSVTWADE+ D  G
Sbjct: 287  LNFQDLPSSSYYTAEAEDISQATGAANLNESVLKPSLKSSGAKRSNRSVTWADERVDNAG 346

Query: 1428 -QNLNECRELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEASD 1252
             +NL E +E++    +   S SA++       RF SAEACA+AL+QAAE VASG ++ + 
Sbjct: 347  SRNLCEVQEMEQTNESHEISESANKGDDGHMLRFESAEACAVALSQAAEAVASGDADVNK 406

Query: 1251 AVSEAGVIILPPPH----GEDEEENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDSP 1084
            A+SEAG+I+LPP      G + E+N D++E +   LKWP KPG           SWYD+P
Sbjct: 407  AMSEAGIIVLPPSQDLGQGGNVEKN-DMIEQESASLKWPTKPGIPQSDLFDPEDSWYDAP 465

Query: 1083 PEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGRS 904
            PEGF+LTLSPF+TM+MALF+WV+SSSLAYIYG++ES HE+YLSVNGREYP+KIV+ DGRS
Sbjct: 466  PEGFSLTLSPFATMWMALFAWVTSSSLAYIYGRDESAHEDYLSVNGREYPRKIVLRDGRS 525

Query: 903  SEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAIV 724
            SEI+ T   CLAR  PGLVA LRLPIPVSTLEQG GRLL+TMSF+D LPAFR KQW  I 
Sbjct: 526  SEIRLTAESCLARTFPGLVANLRLPIPVSTLEQGAGRLLETMSFVDALPAFRTKQWQVIA 585

Query: 723  LLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQ 559
            LLF++ALSV RIPALT YM  RR++L +V++GA ISAEE++IMKD ++PLGR PQ
Sbjct: 586  LLFIEALSVCRIPALTSYMTSRRMVLHQVLDGAHISAEEYDIMKDFMVPLGRDPQ 640


>ref|XP_002321396.2| hypothetical protein POPTR_0015s01330g [Populus trichocarpa]
            gi|550321730|gb|EEF05523.2| hypothetical protein
            POPTR_0015s01330g [Populus trichocarpa]
          Length = 696

 Score =  651 bits (1680), Expect = 0.0
 Identities = 372/709 (52%), Positives = 470/709 (66%), Gaps = 66/709 (9%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M KD+   VKD ++KLQLSLLDGI++E+QL AAGS++S SDY+DVVTERTIAN+CGYPLC
Sbjct: 1    MAKDQSTVVKDTIYKLQLSLLDGIQNEDQLLAAGSIMSHSDYEDVVTERTIANLCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
            GNSL ++RP KGRYRISLKEHKVYDL ETYMYCSSSC+INSR F+ SLQEER   LNPAK
Sbjct: 61   GNSLPSDRPQKGRYRISLKEHKVYDLHETYMYCSSSCVINSRTFSGSLQEERCLVLNPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVP 1930
            LNEVL LFD  SL S+ ++GKNGDLG S LKI+EKT+ V G+V+ E+WIGPSNAI+GYVP
Sbjct: 121  LNEVLMLFDNFSLGSEGSLGKNGDLGFSNLKIEEKTEKVEGEVSFEQWIGPSNAIEGYVP 180

Query: 1929 RRDR--------DL---------------------------KHPQSNNNKGERR-EVGSK 1858
            +RDR        D+                           K  Q    KG  +   GSK
Sbjct: 181  QRDRLEEDFIIDDMDFTSSIITQDEYSISKTPSGLTDTNTDKKTQKPKAKGSHKGSKGSK 240

Query: 1857 HRHVRPNAA-DILSYDMNFTSTII-TQDEYSISK-------TVPAVKAKEPKGKASSKEV 1705
             +  + ++  +    DMNFTSTII TQDEYSISK       T    K ++ K K S K  
Sbjct: 241  AKGTKQSSKQESFINDMNFTSTIIITQDEYSISKSPSGLAGTTSKTKIQKQKEKVSQKSS 300

Query: 1704 NRQSNPVQKPTAPLTN--IQETRSKNKSKNVITKDDKLSLLENIAGPS---------QND 1558
              QS+  +K  +  T+  ++E RSK   K+ ++  D  S  ++    S         ++ 
Sbjct: 301  ENQSSATRKVGSSKTSRKVKEDRSKVAIKDELSSQDLSSPFDSCQTSSITITAEAKEKSV 360

Query: 1557 STKAVKELQES------TAGAXXXXXXXXXXXKATRSVTWADEKTDGDG-QNLNECRELK 1399
            S KA K ++ S      T+GA             TRSVTWADEK    G ++L E R ++
Sbjct: 361  SEKAAKPVESSLKPSLKTSGAKQL----------TRSVTWADEKVGSSGSRDLCEVRGME 410

Query: 1398 DKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAEEVASGKSEASDAVSEAGVIILP 1219
            D K       + D+       +F SAEACA AL+QAAE VASG ++AS+A+SEAG++ILP
Sbjct: 411  DTKAGPEIVDNIDKRDDGYVSKFESAEACAKALSQAAEAVASGDADASNALSEAGLVILP 470

Query: 1218 PPHGEDEE---ENGDVMETDPLQLKWPPKPGXXXXXXXXXXXSWYDSPPEGFNLTLSPFS 1048
             PH  D+    E+ DV++ +   +KWP KPG           SWYD+PPEGF+L LS F+
Sbjct: 471  QPHDLDQGDPMEDVDVLDEESSTIKWPGKPGIPQSECFDPENSWYDAPPEGFSLELSSFA 530

Query: 1047 TMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKIVMPDGRSSEIKQTLAGCLA 868
            T++MALF+WV+SSSLAY+YGK+ES HEEYL VNGREYP+KIV+ DGRS EI+QT+ GCL 
Sbjct: 531  TIWMALFAWVTSSSLAYVYGKDESSHEEYLMVNGREYPRKIVLGDGRSFEIQQTIEGCLG 590

Query: 867  RALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRMKQWHAIVLLFLDALSVSRI 688
            RA P +VA+LRLPIP+STLEQG   LL TMSF+D +PAFRMKQW  I LLF++ALSV RI
Sbjct: 591  RAFPVVVADLRLPIPISTLEQGAANLLGTMSFVDAVPAFRMKQWQVIALLFIEALSVCRI 650

Query: 687  PALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIPLGRVPQFSTQSG 541
            PAL  YM +RR+    V++G ++SAEE+E+MKDL+IPLGR PQFS QSG
Sbjct: 651  PALISYMDNRRM----VVDGVRMSAEEYEVMKDLMIPLGRAPQFSPQSG 695


>ref|XP_010042212.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Eucalyptus grandis]
            gi|629120488|gb|KCW84978.1| hypothetical protein
            EUGRSUZ_B01798 [Eucalyptus grandis]
          Length = 672

 Score =  639 bits (1647), Expect = 0.0
 Identities = 360/672 (53%), Positives = 457/672 (68%), Gaps = 35/672 (5%)
 Frame = -2

Query: 2451 LTVKDAVHKLQLSLLDGIKH-ENQLTAAGSLISRSDYQDVVTERTIANVCGYPLCGNSLS 2275
            ++VKDAV++LQ  LLDG    E QL AAG+++SR DY+DVV ER+IA +CGYPLC   L 
Sbjct: 9    VSVKDAVYRLQHLLLDGAAAGEAQLLAAGAILSRRDYEDVVAERSIAGLCGYPLCATPLP 68

Query: 2274 AERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAKLNEVL 2095
            A+RP KGRYRISLKEH+VYDLQETYMYCS  C+++SRAFA SLQ ER + L+  K+ EVL
Sbjct: 69   ADRPRKGRYRISLKEHRVYDLQETYMYCSPGCVVDSRAFAGSLQPERCAVLDLVKVEEVL 128

Query: 2094 KLFDGLSLDS-DVNMGKNGDLGLSGLKIQEKTDTVAGQVALEEWIGPSNAIDGYVPRRDR 1918
            ++F    L S +   G  G+LG+SGLKI+E  +  AG+V LEEW+GPSNAI+GYVPR+  
Sbjct: 129  RVFGDKGLGSQERGDGGVGELGMSGLKIKENEEVRAGEVPLEEWVGPSNAIEGYVPRKRD 188

Query: 1917 D---LKHPQSNNNKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISKT---- 1759
            D        ++  K E RE GSK R+ +P+  +++  DM+FTS IITQDEYSISK     
Sbjct: 189  DKAAAAAAAASRAKKEPRE-GSKSRNSKPSKKELIFNDMDFTSIIITQDEYSISKLPVNS 247

Query: 1758 ---VPAVKAKEPKGKASSKEVNRQSNPV-----QKPTAPLTNIQETRSKNKSKNVITKDD 1603
               V A KAKE KGK  + +  +    V      KP  P  NI +   K KS + IT+D+
Sbjct: 248  VEEVSATKAKESKGKKVNGKDKQSRRAVIETSSAKPGTP--NINQRELKGKSHD-ITEDE 304

Query: 1602 KLSLLENIAGPSQNDSTKAVKELQ-------------ESTAGAXXXXXXXXXXXKATRSV 1462
              +  + +  PS+   + ++                  ST              K TRSV
Sbjct: 305  YSA--QKVPSPSEVCQSNSLSHFTGAEGADDDGKADGTSTETRLKPSLKSTGTKKVTRSV 362

Query: 1461 TWADEKTD-GDGQNLNECRELKDKKGAVVTSHSADEEVGEESYRFASAEACAMALTQAAE 1285
            TWADEK +  DG +L E RE+ D+K   +TS   +E   E   RF+SAEACAMAL+QAAE
Sbjct: 363  TWADEKVNVADGGHLCEIREMVDEKEPPLTSAIENEHDDENLMRFSSAEACAMALSQAAE 422

Query: 1284 EVASGKSEASDAVSEAGVIILPPPHGEDE----EENGDVMETDPLQLKWPPKPGXXXXXX 1117
               SG+S+  DA   AG+IILP PH  DE    E+N D +E D   +KWP KPG      
Sbjct: 423  AATSGESDVFDA---AGLIILPRPHEVDEKAPVEDNADPLEVDSASVKWPKKPGIPTADI 479

Query: 1116 XXXXXSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREY 937
                 SWYD+PP+GFN+TLSPF+TM+ ALF+W +SS+LAYIYGK+ESFHEEY+SVNGREY
Sbjct: 480  FDADDSWYDAPPDGFNMTLSPFATMWGALFAWTTSSTLAYIYGKDESFHEEYMSVNGREY 539

Query: 936  PQKIVMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLP 757
            PQK+V+PDGRS+EIKQTLAGCL+RALPGL+++LRLP+PVSTLEQG+GRLLDTM+F+D LP
Sbjct: 540  PQKLVLPDGRSTEIKQTLAGCLSRALPGLISDLRLPLPVSTLEQGLGRLLDTMTFMDALP 599

Query: 756  AFRMKQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPKVIEGAQISAEEFEIMKDLIIP 577
            A R KQW  IVLLF+DALSV R+P LT +M +R   L KV++ A++S EE+EIMKDL+IP
Sbjct: 600  ALRTKQWQVIVLLFIDALSVCRVPVLTAHMSNRHPSLQKVLQAARMSVEEYEIMKDLLIP 659

Query: 576  LGRVPQFSTQSG 541
            LGR PQFS QSG
Sbjct: 660  LGRAPQFSAQSG 671


>ref|XP_015169444.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X3 [Solanum tuberosum]
          Length = 634

 Score =  621 bits (1602), Expect = 0.0
 Identities = 355/635 (55%), Positives = 437/635 (68%), Gaps = 25/635 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M K E + VKDAVHKLQL LL+GIK ENQL AAGSL+SRSDYQDVVTER+IAN+CGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLEGIKDENQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCS++C++NS AFA SLQ+ERSSTLNPAK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAG-QVALEEWIGPSNAIDGYV 1933
            LN+VL LF GL L S  ++ +NGDLG S LKIQEK D   G +V+LEEW+GPSNAI+GYV
Sbjct: 121  LNQVLNLFKGLHLHSPEDVKENGDLGSSKLKIQEKVDVKGGGEVSLEEWMGPSNAIEGYV 180

Query: 1932 PRRDRDLKHPQSNN-NKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK-- 1762
            P+RDR +      N NKG +    +KH  ++     IL+ + +F+STIITQDEYS+SK  
Sbjct: 181  PQRDRSVNPALLKNINKGFK----NKHARLQDEKNMILN-EFDFSSTIITQDEYSVSKFP 235

Query: 1761 ----TVPAVKAKEPKGKASSKEVNRQSNPVQK--PTAPLTNIQETRSKNKSKNVITKDDK 1600
                 V + K KE + K   K  +   + + K      L + +ET   +K+   + K DK
Sbjct: 236  APVNAVSSEKFKEAQAKTRYKVRDDDVSILGKRVDALQLRSGEETEKSDKNTRFL-KVDK 294

Query: 1599 LSLLENIAGPSQND-STKAVKELQ----------ESTAGAXXXXXXXXXXXKATRSVTWA 1453
             +  E  +GPSQ+D   K+V  +           E                K ++SVTWA
Sbjct: 295  FNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKQLLKSSLKSSNSKKMSQSVTWA 354

Query: 1452 DEKTDGD-GQNLNECRELKDKKG-AVVTSHSADEEVGEESYRFASAEACAMALTQAAEEV 1279
            DE  DG  G+      ++ + +  A   S S D E  ++SYRF SAEACA AL+QAAE V
Sbjct: 355  DEIIDGGIGKKTESSSKISEYENQAYGGSASTDMEEDDDSYRFESAEACAAALSQAAEAV 414

Query: 1278 ASGKSEASDAVSEAGVIILPPPHGEDEE--ENGDVMETDPLQLKWPPKPGXXXXXXXXXX 1105
            ASG S+  DAVS+AG++ILP     DE   +  ++++ +P  LKWP KPG          
Sbjct: 415  ASG-SDVPDAVSKAGIVILPTSQEVDEAILQETEMLDIEPAPLKWPRKPGMPNYDVFESE 473

Query: 1104 XSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKI 925
              WYD PPEGFN+TLSPF+TMF +LF+W+SSSSLA+IYG +E+ +EEYLS+NGREYP KI
Sbjct: 474  DCWYDGPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDENNNEEYLSINGREYPHKI 533

Query: 924  VMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRM 745
            V+ DG S+EIKQTLAGCLARALPGLVA+LRLP+P+STLEQGM  LL+TMSF+DPLPAFRM
Sbjct: 534  VLSDGLSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRM 593

Query: 744  KQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPK 640
            KQW  IVLLFLDALSV RIP LTPYM  RR  LPK
Sbjct: 594  KQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSLPK 628


>ref|XP_015169443.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Solanum tuberosum]
          Length = 635

 Score =  621 bits (1602), Expect = 0.0
 Identities = 355/635 (55%), Positives = 437/635 (68%), Gaps = 25/635 (3%)
 Frame = -2

Query: 2469 MTKDEVLTVKDAVHKLQLSLLDGIKHENQLTAAGSLISRSDYQDVVTERTIANVCGYPLC 2290
            M K E + VKDAVHKLQL LL+GIK ENQL AAGSL+SRSDYQDVVTER+IAN+CGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLEGIKDENQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2289 GNSLSAERPWKGRYRISLKEHKVYDLQETYMYCSSSCLINSRAFAASLQEERSSTLNPAK 2110
             NSL +ER  KG YRISLKEHKVYDL ETYMYCS++C++NS AFA SLQ+ERSSTLNPAK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2109 LNEVLKLFDGLSLDSDVNMGKNGDLGLSGLKIQEKTDTVAG-QVALEEWIGPSNAIDGYV 1933
            LN+VL LF GL L S  ++ +NGDLG S LKIQEK D   G +V+LEEW+GPSNAI+GYV
Sbjct: 121  LNQVLNLFKGLHLHSPEDVKENGDLGSSKLKIQEKVDVKGGGEVSLEEWMGPSNAIEGYV 180

Query: 1932 PRRDRDLKHPQSNN-NKGERREVGSKHRHVRPNAADILSYDMNFTSTIITQDEYSISK-- 1762
            P+RDR +      N NKG +    +KH  ++     IL+ + +F+STIITQDEYS+SK  
Sbjct: 181  PQRDRSVNPALLKNINKGFK----NKHARLQDEKNMILN-EFDFSSTIITQDEYSVSKFP 235

Query: 1761 ----TVPAVKAKEPKGKASSKEVNRQSNPVQK--PTAPLTNIQETRSKNKSKNVITKDDK 1600
                 V + K KE + K   K  +   + + K      L + +ET   +K+   + K DK
Sbjct: 236  APVNAVSSEKFKEAQAKTRYKVRDDDVSILGKRVDALQLRSGEETEKSDKNTRFL-KVDK 294

Query: 1599 LSLLENIAGPSQND-STKAVKELQ----------ESTAGAXXXXXXXXXXXKATRSVTWA 1453
             +  E  +GPSQ+D   K+V  +           E                K ++SVTWA
Sbjct: 295  FNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKQLLKSSLKSSNSKKMSQSVTWA 354

Query: 1452 DEKTDGD-GQNLNECRELKDKKG-AVVTSHSADEEVGEESYRFASAEACAMALTQAAEEV 1279
            DE  DG  G+      ++ + +  A   S S D E  ++SYRF SAEACA AL+QAAE V
Sbjct: 355  DEIIDGGIGKKTESSSKISEYENQAYGGSASTDMEEDDDSYRFESAEACAAALSQAAEAV 414

Query: 1278 ASGKSEASDAVSEAGVIILPPPHGEDEE--ENGDVMETDPLQLKWPPKPGXXXXXXXXXX 1105
            ASG S+  DAVS+AG++ILP     DE   +  ++++ +P  LKWP KPG          
Sbjct: 415  ASG-SDVPDAVSKAGIVILPTSQEVDEAILQETEMLDIEPAPLKWPRKPGMPNYDVFESE 473

Query: 1104 XSWYDSPPEGFNLTLSPFSTMFMALFSWVSSSSLAYIYGKEESFHEEYLSVNGREYPQKI 925
              WYD PPEGFN+TLSPF+TMF +LF+W+SSSSLA+IYG +E+ +EEYLS+NGREYP KI
Sbjct: 474  DCWYDGPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDENNNEEYLSINGREYPHKI 533

Query: 924  VMPDGRSSEIKQTLAGCLARALPGLVAELRLPIPVSTLEQGMGRLLDTMSFIDPLPAFRM 745
            V+ DG S+EIKQTLAGCLARALPGLVA+LRLP+P+STLEQGM  LL+TMSF+DPLPAFRM
Sbjct: 534  VLSDGLSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRM 593

Query: 744  KQWHAIVLLFLDALSVSRIPALTPYMMDRRILLPK 640
            KQW  IVLLFLDALSV RIP LTPYM  RR  LPK
Sbjct: 594  KQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSLPK 628