BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00007973
         (613 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   338   e-111
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   288   3e-87
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo...   272   1e-86
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   272   3e-86
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   275   5e-86
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...   272   8e-84
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   271   6e-81
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   271   6e-81
gb|KYP64461.1| Retrovirus-related Pol polyprotein from transposo...   258   7e-80
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   268   1e-79
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   268   1e-79
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   267   1e-79
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   266   3e-79
gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo...   253   4e-79
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   265   6e-79
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           265   1e-78
gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposo...   259   3e-78
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   260   6e-78
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   260   8e-78
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   261   1e-77

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttata]
          Length = 598

 Score =  338 bits (866), Expect = e-111
 Identities = 161/204 (78%), Positives = 179/204 (87%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           DVWGP+S PT GGNRYFLSIIDD+SRKV+VFL+K KSDVF+KFK WKTLIENQTGKRIKT
Sbjct: 212 DVWGPTSVPTYGGNRYFLSIIDDYSRKVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKT 271

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNG+EFCN  FDNLCA  GI+RHK+V +TPQQNGVAERMNRTLLERVRSML SSGL 
Sbjct: 272 LRTDNGIEFCNLEFDNLCANSGIRRHKSVVHTPQQNGVAERMNRTLLERVRSMLTSSGLP 331

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           K FWGEA+ TA YLINRSPS+PL G  PESV+ GK++D SNL VFG AAFVH K DKLEP
Sbjct: 332 KLFWGEAILTATYLINRSPSMPLNGDLPESVWCGKKVDLSNLHVFGYAAFVHHKGDKLEP 391

Query: 542 RSKKCVFLGYPEGVKGYRLWLRGE 613
           R  KC+FLGYP+GVKGYRLWL+G+
Sbjct: 392 RFVKCIFLGYPDGVKGYRLWLKGD 415


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  288 bits (736), Expect = 3e-87
 Identities = 130/201 (64%), Positives = 164/201 (81%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS  P+ GG RYFL++IDD+SRKVW++ +KNKS+ F KFK WK L+E QT +++K 
Sbjct: 456  DLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKK 515

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNGLEF +N F++LC + GI RH+TV YTPQQNG+AERMNRT+LERVR ML+SSGLS
Sbjct: 516  LRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLS 575

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            K FW EA  TA +LINRSPS  L+ K P+  ++GK  D+ +LKVFGC A+VH K DKLEP
Sbjct: 576  KVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEP 635

Query: 542  RSKKCVFLGYPEGVKGYRLWL 604
            R+ KC+FLGYP+GVKGY+LW+
Sbjct: 636  RAVKCIFLGYPKGVKGYKLWI 656


>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 498

 Score =  272 bits (696), Expect = 1e-86
 Identities = 123/200 (61%), Positives = 156/200 (78%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D+WGPS   T GG  YFL+IIDDF+R+VW++++K+K++ ++KF++W TLI+NQ   ++K 
Sbjct: 79  DLWGPSRVKTLGGGSYFLTIIDDFTRRVWLYVLKDKTETYKKFRDWYTLIQNQLETKLKV 138

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNGLEF +  F   C   GIKRH+TVP+TPQQNG+AERMNRT+LERVR ML  SGLS
Sbjct: 139 LRTDNGLEFLSEQFAEFCRNQGIKRHRTVPHTPQQNGLAERMNRTILERVRCMLLGSGLS 198

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           K+FWGEA  TAAYLINR PS  L  K P   + GK +D+SNL+VFG  A+ H K  KLEP
Sbjct: 199 KKFWGEAATTAAYLINRCPSSALNNKTPMEAWHGKPVDYSNLRVFGSLAYAHVKEGKLEP 258

Query: 542 RSKKCVFLGYPEGVKGYRLW 601
           R+ KCVF+GYP+GVKGY+LW
Sbjct: 259 RAVKCVFIGYPDGVKGYKLW 278


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  272 bits (695), Expect = 3e-86
 Identities = 122/200 (61%), Positives = 153/200 (76%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D+WGPS   + GG RYFLSI+DDFSRKVWV+ +K K++VF++FK WK L+E Q G+ +K 
Sbjct: 26  DLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQKNEVFDRFKEWKVLVETQIGRNLKK 85

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNGLEFC+  F   C E G+ RHKTV  TPQ+NG+ ER NRT+LERVR ML  +GL 
Sbjct: 86  LRTDNGLEFCDEKFSKFCRENGVARHKTVRGTPQKNGLVERFNRTILERVRCMLNHAGLP 145

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           K FW EAV +A Y INR PS  L+ K P+ V+SG+++D+S L+VFGC A+ H K DKLEP
Sbjct: 146 KSFWAEAVSSAVYCINRCPSTALEFKTPQEVWSGRKVDYSELRVFGCIAYAHIKQDKLEP 205

Query: 542 RSKKCVFLGYPEGVKGYRLW 601
           R+ K +F+GYPEGVKGYRLW
Sbjct: 206 RALKFIFIGYPEGVKGYRLW 225


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 634

 Score =  275 bits (702), Expect = 5e-86
 Identities = 124/200 (62%), Positives = 155/200 (77%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D+WGPS   + GG RYFLSI+DDFSRKVWV+ +K K++VF++FK WK L+E QTG+ +K 
Sbjct: 144 DLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQKNEVFDRFKEWKVLVETQTGRNLKK 203

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNGLEFC+  F   C E G+ RHKTV  TPQ+NG+AER NRT+LERVR ML  +GL 
Sbjct: 204 LRTDNGLEFCDEKFSKFCRENGVARHKTVRGTPQKNGLAERFNRTILERVRCMLNHAGLP 263

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           K FW EAV +A Y INR PS  L+ K P+ V+SG+++D+S L+VFGC A+ H K DKLEP
Sbjct: 264 KSFWVEAVSSAVYCINRCPSTALEFKTPQEVWSGRKVDYSELRVFGCIAYAHIKQDKLEP 323

Query: 542 RSKKCVFLGYPEGVKGYRLW 601
           R+ K +F+GYPEGVKGYRLW
Sbjct: 324 RALKFIFIGYPEGVKGYRLW 343


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 780

 Score =  272 bits (696), Expect = 8e-84
 Identities = 123/200 (61%), Positives = 156/200 (78%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS   T GG  YFL+IIDDF+R+VW++++K+K++ ++KF++W TLI+NQ   ++K 
Sbjct: 482  DLWGPSRVKTLGGGSYFLTIIDDFTRRVWLYVLKDKTETYKKFRDWYTLIQNQLETKLKV 541

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNGLEF +  F   C   GIKRH+TVP+TPQQNG+AERMNRT+LERVR ML  SGLS
Sbjct: 542  LRTDNGLEFLSEQFAEFCRNQGIKRHRTVPHTPQQNGLAERMNRTILERVRCMLLGSGLS 601

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            K+FWGEA  TAAYLINR PS  L  K P   + GK +D+SNL+VFG  A+ H K  KLEP
Sbjct: 602  KKFWGEAATTAAYLINRCPSSALNNKTPMEAWHGKPVDYSNLRVFGSLAYAHVKEGKLEP 661

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KCVF+GYP+GVKGY+LW
Sbjct: 662  RAVKCVFIGYPDGVKGYKLW 681


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  271 bits (694), Expect = 6e-81
 Identities = 123/200 (61%), Positives = 154/200 (77%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS   +  G RY+++ IDDFSRKVWV+ +K K +VF KFK WKT++E +TGK +KT
Sbjct: 597  DLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKT 656

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNGLEFCN  FD  C + GI RH+TV +TPQQNGVAERMN+TL++R R M   +GLS
Sbjct: 657  LRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLS 716

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            K+FW EAV+TAAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEP
Sbjct: 717  KKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEP 776

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGYRLW
Sbjct: 777  RAMKCIFLGYATGVKGYRLW 796


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  271 bits (694), Expect = 6e-81
 Identities = 123/200 (61%), Positives = 154/200 (77%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS   +  G RY+++ IDDFSRKVWV+ +K K +VF KFK WKT++E +TGK +KT
Sbjct: 810  DLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKT 869

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNGLEFCN  FD  C + GI RH+TV +TPQQNGVAERMN+TL++R R M   +GLS
Sbjct: 870  LRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLS 929

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            K+FW EAV+TAAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEP
Sbjct: 930  KKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEP 989

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGYRLW
Sbjct: 990  RAMKCIFLGYATGVKGYRLW 1009


>gb|KYP64461.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 597

 Score =  258 bits (658), Expect = 7e-80
 Identities = 119/199 (59%), Positives = 150/199 (75%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D+WGPS   + G +RYF++ IDD+SRKVWV+ +K+K +VF +FK WKT++E +TGK +KT
Sbjct: 399 DLWGPSPVQSHGRSRYFVTFIDDYSRKVWVYFLKSKDEVFGRFKEWKTMVEKRTGKLVKT 458

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNGLEFCN LFD+ C E  I RH TV +TPQQNGV ERMN+TLL+R R M  ++GLS
Sbjct: 459 LRTDNGLEFCNALFDDYCKEASIVRHLTVIHTPQQNGVVERMNQTLLQRARCMCLNAGLS 518

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           K F  EAV+T AYL+NRSPS  +  K P+ V SGK   +  L++FGC A+ H    KLEP
Sbjct: 519 KEFQAEAVNTIAYLVNRSPSTAIDLKTPQEVSSGKPYYYFGLRIFGCPAYAHVNDGKLEP 578

Query: 542 RSKKCVFLGYPEGVKGYRL 598
           R+ KC+FLGYP GVKGYRL
Sbjct: 579 RAMKCIFLGYPTGVKGYRL 597


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  268 bits (684), Expect = 1e-79
 Identities = 120/200 (60%), Positives = 152/200 (76%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS +P+ GG RY L+IIDD+SRKVW + +K+K D F  FKNWK +IE QT +++K 
Sbjct: 490  DLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKL 549

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++
Sbjct: 550  LRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMN 609

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            KRFW EA  TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEP
Sbjct: 610  KRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEP 669

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGY+LW
Sbjct: 670  RAVKCLFLGYGSGVKGYKLW 689


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  268 bits (684), Expect = 1e-79
 Identities = 120/200 (60%), Positives = 152/200 (76%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS +P+ GG RY L+IIDD+SRKVW + +K+K D F  FKNWK +IE QT +++K 
Sbjct: 490  DLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKL 549

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++
Sbjct: 550  LRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMN 609

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            KRFW EA  TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEP
Sbjct: 610  KRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEP 669

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGY+LW
Sbjct: 670  RAVKCLFLGYGSGVKGYKLW 689


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  267 bits (683), Expect = 1e-79
 Identities = 119/200 (59%), Positives = 152/200 (76%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS +P+ GG RY L++IDD+SRKVW + +K+K D F  FKNWK +IE QT +++K 
Sbjct: 490  DLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKL 549

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++
Sbjct: 550  LRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMN 609

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            KRFW EA  TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEP
Sbjct: 610  KRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEP 669

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGY+LW
Sbjct: 670  RAVKCLFLGYGSGVKGYKLW 689


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  266 bits (680), Expect = 3e-79
 Identities = 124/204 (60%), Positives = 154/204 (75%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D WGP    + GG R+F+SIIDD+SR  WV++MK+KS+ F+KFK WK L+ENQTGK+IK 
Sbjct: 476  DCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKR 535

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNGLEFC + FD  C + GI RH+TV  TPQQNGVAERMN+TLLER R ML+++GL 
Sbjct: 536  LRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLD 595

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            +RFW EAV TA YLINR P   ++ K P  ++SGK  D+SNLK FGC A+ H    KLEP
Sbjct: 596  RRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEP 655

Query: 542  RSKKCVFLGYPEGVKGYRLWLRGE 613
            R+KK VF+GY +GVKG+R+W   E
Sbjct: 656  RAKKGVFVGYGDGVKGFRIWSPAE 679


>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 507

 Score =  253 bits (647), Expect = 4e-79
 Identities = 121/204 (59%), Positives = 148/204 (72%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D WGPS  P+ GG RYFLSIIDD+SR  W+F+ K+K+  F+ FK WK L+E QT KR+K 
Sbjct: 109 DCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQTSKRVKR 168

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNGLEFC+  F++ C   GI R  TV  TPQQNGVAERMNRTLLER R +L+++GLS
Sbjct: 169 LRTDNGLEFCSKEFNDYCKAEGIARQYTVRNTPQQNGVAERMNRTLLERARCLLSNAGLS 228

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           + FW EAV T  YLINRSPS  +  K P  V+S K  ++S L+VFGC A+ H    KLEP
Sbjct: 229 RSFWAEAVSTTCYLINRSPSTIIDCKTPIEVWSNKPANYSLLRVFGCNAYYHVNEGKLEP 288

Query: 542 RSKKCVFLGYPEGVKGYRLWLRGE 613
           RSKK +F+GY +GVKGYR+W   E
Sbjct: 289 RSKKGLFMGYGDGVKGYRIWSPAE 312


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  265 bits (678), Expect = 6e-79
 Identities = 118/200 (59%), Positives = 152/200 (76%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS +P+ GG RY L+IIDD+SRKVW + +K+K D F  FK WK +IE QT K +K 
Sbjct: 491  DLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKV 550

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDN  EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++ + R ML+++ ++
Sbjct: 551  LRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMN 610

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            KRFW EA +TA YLINRSPS+PL  K P  ++SG   D+S L+VFGC A+ H   +KLEP
Sbjct: 611  KRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEP 670

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGY+LW
Sbjct: 671  RAIKCLFLGYGLGVKGYKLW 690


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  265 bits (676), Expect = 1e-78
 Identities = 119/200 (59%), Positives = 151/200 (75%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS +P+ GG RY L+IIDD+SRKVW + +K+K D F  FKNWK +IE QT +++K 
Sbjct: 492  DLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKL 551

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            L TDNG EFC++ F++ C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++
Sbjct: 552  LCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMN 611

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            KRFW EA  TA YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEP
Sbjct: 612  KRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEP 671

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGY+LW
Sbjct: 672  RAVKCLFLGYGSGVKGYKLW 691


>gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 864

 Score =  259 bits (662), Expect = 3e-78
 Identities = 123/203 (60%), Positives = 154/203 (75%), Gaps = 3/203 (1%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            DVWGP++  +  G +YF++ IDD SRKVWV+ +K+KS+VFE FK WK ++EN+TG +IK 
Sbjct: 454  DVWGPTTVSSISGKQYFVTFIDDHSRKVWVYFLKHKSEVFEAFKMWKAMVENETGLKIKK 513

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTDNG E+ +  F   C E+GI+  +TVP TPQQNGVAERMNRTL ER RSM   SGL 
Sbjct: 514  LRTDNGGEYEDTRFKRFCYEHGIRMERTVPGTPQQNGVAERMNRTLTERARSMRVQSGLP 573

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVH---QKVDK 532
            K+FW E V+TAAYLINR PSVPL+ K PE V+SGKE+  S+L+VFGC A+VH   Q  +K
Sbjct: 574  KQFWAETVNTAAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRNK 633

Query: 533  LEPRSKKCVFLGYPEGVKGYRLW 601
            L+P+SKKC F+GY E   GYRLW
Sbjct: 634  LDPKSKKCTFIGYGEDEFGYRLW 656


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
           gi|18542925|gb|AAL75759.1| Putative pol polyprotein
           [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1005

 Score =  260 bits (665), Expect = 6e-78
 Identities = 118/200 (59%), Positives = 149/200 (74%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D+WGPS +P+ GG RY L+IIDD SRKVW + +K+K D F  FK WK +IE QT K +K 
Sbjct: 228 DLWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKV 287

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
           LRTDNG EFC++ FD+   + GI RH T+PYTPQQNGVAERMNRT++ +   ML+++ ++
Sbjct: 288 LRTDNGGEFCSDAFDDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCMLSNARMN 347

Query: 362 KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
           KRFW EA +TA YLINRSPS+PL  K P  V+SG   D+S L+VFGC A+ H    KLEP
Sbjct: 348 KRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAHVDNGKLEP 407

Query: 542 RSKKCVFLGYPEGVKGYRLW 601
           R+ KC+FLGY  GVKGY+LW
Sbjct: 408 RAIKCLFLGYGSGVKGYKLW 427


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score =  260 bits (665), Expect = 8e-78
 Identities = 119/202 (58%), Positives = 149/202 (73%), Gaps = 2/202 (0%)
 Frame = +2

Query: 2   DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
           D+WGPS  P+ GG RY ++IIDDFSRKVWV+ +++K++ F  FK WKTL+E QTGK++K 
Sbjct: 187 DLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKK 246

Query: 182 LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGL- 358
           LRTDNGLEFC   F+  CA +GI RHKT+P  PQQNGVAER+NRT+LER R ML+++GL 
Sbjct: 247 LRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILERARCMLSNAGLW 306

Query: 359 -SKRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKL 535
             +  W EA  TA YLINRSP   L  K PE ++SG  ID+SNL++FGC A+ H    KL
Sbjct: 307 HQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPIDYSNLRIFGCPAYAHVNDGKL 366

Query: 536 EPRSKKCVFLGYPEGVKGYRLW 601
            PR+ KC+FLGY    KGYRLW
Sbjct: 367 APRAIKCIFLGYASESKGYRLW 388


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1156

 Score =  261 bits (666), Expect = 1e-77
 Identities = 117/200 (58%), Positives = 149/200 (74%)
 Frame = +2

Query: 2    DVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKT 181
            D+WGPS +P+ GG  Y L+IIDD+SRKVW + +K+K D F  FK WK +IE QT K +K 
Sbjct: 431  DLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKV 490

Query: 182  LRTDNGLEFCNNLFDNLCAEYGIKRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLS 361
            LRTD+G EFC++ FD+ C + GI RH T+PYTPQQNGVAERMNRT++   R ML+++ ++
Sbjct: 491  LRTDSGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISNTRCMLSNARMN 550

Query: 362  KRFWGEAVHTAAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEP 541
            KRFW E  +TA YLINRSPS+PL  K P  V+SG   D+S L+VFGC A+ H    KLEP
Sbjct: 551  KRFWAEVANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEP 610

Query: 542  RSKKCVFLGYPEGVKGYRLW 601
            R+ KC+FLGY  GVKGY+LW
Sbjct: 611  RAIKCLFLGYGSGVKGYKLW 630