BLASTX nr result
ID: Rehmannia28_contig00001285
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00001285
(3023 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot... 1536 0.0
ref|YP_009104374.1| putative replicase [Cassava Ivorian bacillif... 1391 0.0
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus] 884 0.0
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] gi|82... 834 0.0
gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus] 738 0.0
gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus] 735 0.0
ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus] g... 734 0.0
gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus] 735 0.0
ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus] gi|1... 733 0.0
gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus] 728 0.0
ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|5131... 723 0.0
ref|NP_041196.1| replicase [Brome mosaic virus] gi|137251|sp|P03... 719 0.0
gb|ADW09019.1| replication protein 1a [Brome mosaic virus] 717 0.0
dbj|BAJ41520.1| 1a protein [Brome mosaic virus] 717 0.0
emb|CAA41361.1| 1a protein [Brome mosaic virus] 715 0.0
gb|ABF83485.1| 1a [Brome mosaic virus] 715 0.0
ref|NP_659000.1| 1a protein [Broad bean mottle virus] gi|401312|... 713 0.0
ref|NP_689392.1| 1a protein [Spring beauty latent virus] gi|2253... 711 0.0
gb|AER35120.1| putative RNA helicase and methyltransferase [Cucu... 699 0.0
ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus] gi... 698 0.0
>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
gi|398650492|dbj|BAM34543.1| replication protein 1a
[Amazon lily mild mottle virus]
Length = 945
Score = 1536 bits (3978), Expect = 0.0
Identities = 762/948 (80%), Positives = 818/948 (86%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MAFSFNVRDLVDAEG+QAIGV+ALVDSLATQ+A DQIEYSKR+ +VFIRQQLSV EGEKI
Sbjct: 1 MAFSFNVRDLVDAEGAQAIGVRALVDSLATQIAHDQIEYSKRSNKVFIRQQLSVAEGEKI 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGEILDFGGSWLFHWKRGSQV 449
RKRFGGAYEL+LTQEFTAPHSFAAALR CETLECLDFFP+GEILDFGGSWLFHWKRG V
Sbjct: 61 RKRFGGAYELQLTQEFTAPHSFAAALRTCETLECLDFFPDGEILDFGGSWLFHWKRGKPV 120
Query: 450 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 629
HSCCPILDARDAAR QERLVHMEK+VR+SS Y +LPGPNFC +AE+C VQCPYAI IH
Sbjct: 121 HSCCPILDARDAARQQERLVHMEKLVRKSSKTYADLPGPNFCDQRAEECSVQCPYAICIH 180
Query: 630 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDFRD 809
GGYDMGFQTLC+AMHKHGCVMLRGTMMFD+EMLLY+ GFI DLNCVWS R +AFDFRD
Sbjct: 181 GGYDMGFQTLCAAMHKHGCVMLRGTMMFDAEMLLYKDGFIPDLNCVWSIRGDKIAFDFRD 240
Query: 810 ESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIRHC 989
ESTLSY HSFKNVKSFLTDQ+HVIGTTAYILERC I+ GIMSYK+TAVSGDIPRTKIRHC
Sbjct: 241 ESTLSYCHSFKNVKSFLTDQAHVIGTTAYILERCVIDMGIMSYKVTAVSGDIPRTKIRHC 300
Query: 990 IWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLRLI 1169
IWFPRTRDYLHINVVD SKV+HRLAWRKVKVKLDTVREVEEIAFRCFK+ KPWEENLRLI
Sbjct: 301 IWFPRTRDYLHINVVDKSKVAHRLAWRKVKVKLDTVREVEEIAFRCFKENKPWEENLRLI 360
Query: 1170 ASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGWW 1349
ASTLSAKSSTIIVNGMSMMAGERLDP DYHYVAFSLLLNCKRKFEELQ VYKKIVWQGWW
Sbjct: 361 ASTLSAKSSTIIVNGMSMMAGERLDPLDYHYVAFSLLLNCKRKFEELQAVYKKIVWQGWW 420
Query: 1350 NHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVFESELEALSGSKSWEDDA 1529
NHCT WWSEST+FQDFLA CFPSLLDYYHSKVFVEKI EC VFESEL AL GSKSW DDA
Sbjct: 421 NHCTGWWSESTKFQDFLAVCFPSLLDYYHSKVFVEKISECVVFESELAALEGSKSWSDDA 480
Query: 1530 YSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGDVSPKVVIKD 1709
Y++ SK KE EK+ + E+ K + + ++ D
Sbjct: 481 YNILNNNLLLCALALSKCKEHKPEKEKEKEEVLAVPSKATPTLVEVKEEEKLDTPIIAVD 540
Query: 1710 TDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLG 1889
RPGRME+RAQAKDEFVAYTRK++SNAAANL+RLWKLCGGSGSDNFVSTNCL+VLKLG
Sbjct: 541 ---RPGRMEIRAQAKDEFVAYTRKINSNAAANLSRLWKLCGGSGSDNFVSTNCLDVLKLG 597
Query: 1890 DSLINFHKRSGWIFETNETYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAM 2069
DSLINFHKRSG+I++TNETY+VGFNGNGLGVK DENYIVDKTCILDNL +IAEGADKA
Sbjct: 598 DSLINFHKRSGFIYKTNETYEVGFNGNGLGVKRDDENYIVDKTCILDNLEAIAEGADKAS 657
Query: 2070 NSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVR 2249
S+A+ +L+DGVAGCGKTTSICDQFNAE+DLIVTANRKS+ EIR KLFKDSPD GK +VR
Sbjct: 658 VSTASIILVDGVAGCGKTTSICDQFNAESDLIVTANRKSAVEIRHKLFKDSPDAGKIYVR 717
Query: 2250 TADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQ 2429
TADSVLMHDCI A RILFDE GLLHF FGDSEQI+FINRD+TF
Sbjct: 718 TADSVLMHDCIKAERILFDEVGLLHFGQLVAVARKVEAKVVLGFGDSEQIAFINRDRTFN 777
Query: 2430 MKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKARHSKYHGWESKSNVVRSVSAPIDV 2609
+ YSQL VDEST TYRCPKDVV LVK +K K SKY W +KS VVRSVSAPIDV
Sbjct: 778 LNYSQLVVDESTTATTTYRCPKDVVELVKR-MKKKNHKSKYQAWTTKSKVVRSVSAPIDV 836
Query: 2610 VGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHLNMSEKIKTVHEAQGISVPKVRLVRLK 2789
VGLPGVKLE DWVYLTMTQYDKASLLSKAKELHL+MSEKIKTVHEAQGISVP+VRLVRLK
Sbjct: 837 VGLPGVKLESDWVYLTMTQYDKASLLSKAKELHLDMSEKIKTVHEAQGISVPRVRLVRLK 896
Query: 2790 NTKCDLFSAEAHCLVALTRHTRRFEYLRVPGLKGDLIEEACKASLSLQ 2933
NTKCDLFSAEAHCLVALTRHTR FEYLRVPGLKGDLIEEACK S+ LQ
Sbjct: 897 NTKCDLFSAEAHCLVALTRHTRCFEYLRVPGLKGDLIEEACKTSMVLQ 944
>ref|YP_009104374.1| putative replicase [Cassava Ivorian bacilliform virus]
gi|586908843|gb|AHJ89005.1| putative replicase [Cassava
Ivorian bacilliform virus]
Length = 943
Score = 1391 bits (3600), Expect = 0.0
Identities = 689/958 (71%), Positives = 792/958 (82%), Gaps = 9/958 (0%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MAFSFNVRDLVDAEGSQA+GV+ALVDSLAT++A+DQIEY KR+++V++RQ L+VQEGEKI
Sbjct: 1 MAFSFNVRDLVDAEGSQALGVRALVDSLATKLAEDQIEYQKRSQKVYVRQMLTVQEGEKI 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGEILDFGGSWLFHWKRGSQV 449
RKRFGGA++L LTQEF APHSFAAALR CETLECLDFFP+G++LDFGGSWLFHW+RG QV
Sbjct: 61 RKRFGGAFDLALTQEFVAPHSFAAALRTCETLECLDFFPQGQVLDFGGSWLFHWQRGHQV 120
Query: 450 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 629
HSCCP+LD RDA RHQER+VHM+K+V + SK+ LP +FC L+AE+C+VQCPYAI IH
Sbjct: 121 HSCCPVLDIRDACRHQERIVHMQKLVLKRPSKFEALPAADFCTLRAEECKVQCPYAICIH 180
Query: 630 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDFRD 809
G YDMGF+T+C AM++HG V+LRGTMMFDSEMLLY+ GF++DLNCVWS ++FDFRD
Sbjct: 181 GAYDMGFETMCKAMNRHGTVLLRGTMMFDSEMLLYKEGFMADLNCVWSISGDRISFDFRD 240
Query: 810 ESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIRHC 989
ESTLSYTHSFKNVKSFLTDQ+ V AY+LERC+IE+GIMS+KITAVSGD+PR++IRHC
Sbjct: 241 ESTLSYTHSFKNVKSFLTDQAFVYNNVAYLLERCSIEYGIMSFKITAVSGDVPRSRIRHC 300
Query: 990 IWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLRLI 1169
+WFPRTRDYLHINVVD + S+RLAWRKVKVK+DTVREVEEIAFRCFK+ KPWEENLRLI
Sbjct: 301 VWFPRTRDYLHINVVDTT--SNRLAWRKVKVKIDTVREVEEIAFRCFKEAKPWEENLRLI 358
Query: 1170 ASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGWW 1349
ASTLSAKSSTIIVNGMSMMAGERLD DYHYVAFSLLLNCKRKFEELQCVYKKIVWQG W
Sbjct: 359 ASTLSAKSSTIIVNGMSMMAGERLDVLDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGRW 418
Query: 1350 NHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVFESELEALSGSKSWEDDA 1529
+HCT+WWSE RFQ FL +CFPSLL+YY+SKVFVEKI ECQVFESELEA+SG +W + A
Sbjct: 419 HHCTRWWSEGDRFQKFLESCFPSLLEYYNSKVFVEKIVECQVFESELEAISGCTNWTETA 478
Query: 1530 YSVXXXXXXXXXXXXSK---TKEKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGDVSPKVV 1700
+ SK + E K + + D +P+V + S V
Sbjct: 479 TNCLNNSLLLCALALSKAPLSPENPKPETVADPRPEVSSDDKIES-------------VE 525
Query: 1701 IKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVL 1880
KD GRMELRAQAK EFVAYTR L+SNAA+NL RLW+LCGG GSDNFVST CLNVL
Sbjct: 526 TKDAVKVDGRMELRAQAKAEFVAYTRTLNSNAASNLKRLWQLCGGDGSDNFVSTECLNVL 585
Query: 1881 KLGDSLINFHKRSGWIFETNETYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGAD 2060
KLGDS INFHK SGWIF T+ +Y+VG+NG GLGVK ENYIVDKTC LDNLA+IA+GA+
Sbjct: 586 KLGDSQINFHKSSGWIFPTSTSYEVGYNGRGLGVKGETENYIVDKTCTLDNLAAIADGAE 645
Query: 2061 -KAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDLGK 2237
K + + L+ GCGKTTSI +QF+A +DLIVTANRKS+ EIR+KLF+ SPDLGK
Sbjct: 646 KKPVFQKRSSCLLTVSLGCGKTTSIINQFDANSDLIVTANRKSAVEIRNKLFEFSPDLGK 705
Query: 2238 RFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRD 2417
+FVRTADSVLMHDCITA R+LFDE GLLHF FGDSEQI+FINRD
Sbjct: 706 KFVRTADSVLMHDCITARRLLFDEVGLLHFGQLVAVAGKVQADVVLGFGDSEQIAFINRD 765
Query: 2418 KTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKARHSKYHGWESKSNVVRSVSA 2597
KTF +KYS+LSVDEST TYRCP+DVV LVK VIK K HSKYH WE+KS+V RSVSA
Sbjct: 766 KTFDLKYSRLSVDESTTALTTYRCPRDVVELVK-VIKEKTPHSKYHTWETKSSVSRSVSA 824
Query: 2598 PIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHL-----NMSEKIKTVHEAQGISV 2762
PIDV+GLPGVKLEPDWVYLTMTQYDKASLLSKA+ELHL +++E IKTVHE QG+SV
Sbjct: 825 PIDVIGLPGVKLEPDWVYLTMTQYDKASLLSKARELHLDVVVKDVNEMIKTVHEGQGLSV 884
Query: 2763 PKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPGLKGDLIEEACKASLSLQV 2936
PKVRLVRLKNTKCDLFSAEAHCLVALTRHT++FEYLRVPGLK DLIE+ACKAS+SLQ+
Sbjct: 885 PKVRLVRLKNTKCDLFSAEAHCLVALTRHTQKFEYLRVPGLKNDLIEKACKASMSLQL 942
>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
Length = 962
Score = 884 bits (2285), Expect = 0.0
Identities = 479/950 (50%), Positives = 615/950 (64%), Gaps = 43/950 (4%)
Frame = +3
Query: 93 AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 272
A SFNVRDL+++ G+ A+GVK LVD+ AT+ A++Q EY KR+K+V++RQ LS +GEK++
Sbjct: 3 ATSFNVRDLINSNGADAMGVKGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62
Query: 273 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 449
KRFGG ++L+L+QEF APHSFA A+RQCETLECL FPE ILDFGGSWLFHW+R V
Sbjct: 63 KRFGGTFDLQLSQEFIAPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 122
Query: 450 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 629
HSCCP+LDARD ARHQER++ M+K V K+ P+FC LKAEDCEV+ PYAISIH
Sbjct: 123 HSCCPVLDARDMARHQERMISMQKCVAHRPGKFEAFESPDFCLLKAEDCEVRSPYAISIH 182
Query: 630 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 785
G YDMGF+ LC AMH HG +MLRGTMMFD+ ML+++ G + DLNC W+K G
Sbjct: 183 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFDEGVMEDLNCRWTKEKGDPFGLRGA 242
Query: 786 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAV 953
+V FDF DESTLSY+HS+KN+KSFLT+ + I Y+LERC I +GIMS+KI AV
Sbjct: 243 PCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIENVQYVLERCVISYGIMSFKIFAV 302
Query: 954 SGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFK 1133
SG IPRT++RHC+WFP+ RDY++INV++ + W KV+VKLDTVREVEEI FRCFK
Sbjct: 303 SGKIPRTRLRHCVWFPKVRDYVNINVMNPNDPR---IWSKVRVKLDTVREVEEICFRCFK 359
Query: 1134 DQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQ 1313
D KPWEENL+L+ S LS+KSSTIIVNGM+MMAGERLD DYH+VAFSL+L+ +RKF+
Sbjct: 360 DSKPWEENLKLVGSCLSSKSSTIIVNGMTMMAGERLDVLDYHHVAFSLMLSARRKFDMFG 419
Query: 1314 CVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVFESELE 1493
+ W+GW +H K S +D FPSL+ YY FVEK+ +C++F +EL
Sbjct: 420 KAMNSLEWKGWVSHFFKSLWPSGDLRDLFGCYFPSLIRYYDKIEFVEKLTQCEIFVNEL- 478
Query: 1494 ALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQPNTHV 1673
++ ++D + K K+ D + + G + + + V
Sbjct: 479 ----GETDDEDQRDLVTKAADVFKNTLLKVAIKM-SLDKTFKPTEGRGEEKTTATVASSV 533
Query: 1674 VGDVSPKVVIKDTDSRP---------------------GRMELRAQAKDEFVAYTRKLHS 1790
GDV+ K V DT S P GR+ +R +A E+ Y KL
Sbjct: 534 AGDVTEKPV--DTVSGPTIQAPLVMRSNTVTPLSEPLDGRLAVRLEAMKEYKRYLLKLQR 591
Query: 1791 NAAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFN 1964
N +NLA LW LCGG S S+N +ST L +++ DSL+N HK G W+F + Y VG+N
Sbjct: 592 NTESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGSWLFPNDFEYMVGYN 651
Query: 1965 GNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQF 2144
+GLG K +E ++V+K C+L+N +A G A LMDGVAGCGKTT+I F
Sbjct: 652 SSGLGEKRSNEVFLVNKDCVLNNNVLLANGV-PAQPPKGNINLMDGVAGCGKTTAIKKAF 710
Query: 2145 NAETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDECGLL 2321
E+DLIVTAN+KSSE+I +F D+PD+G+ VRTADSVLMH R+LFDE L+
Sbjct: 711 VFESDLIVTANKKSSEDIIKAMFNDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLV 770
Query: 2322 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 2501
HF FGDSEQISF++RD+ F MKY +LS D S T+RCPKDV
Sbjct: 771 HFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDNSDQQIRTFRCPKDV 830
Query: 2502 VHLVKTVI-KGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKA 2678
V VK + K AR SKY+ W + S V +S+ V + + L PD YLTMTQ DKA
Sbjct: 831 VECVKIMARKVGARGSKYNNWFTTSAVRKSLGYH-KVSSINELPLRPDVHYLTMTQADKA 889
Query: 2679 SLLSKAKELHL-----NMSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFS 2813
SLLSKA+E + E IKT HE+QGISVPKV L R K+TKCDLF+
Sbjct: 890 SLLSKARETRFRPNVSTVDEVIKTTHESQGISVPKVILWRGKSTKCDLFT 939
>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
gi|82004832|sp|Q9DUT3.1|1A_PZSVT RecName:
Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|10185102|emb|CAC08526.1|
unnamed protein product [Pelargonium zonate spot virus]
Length = 962
Score = 834 bits (2155), Expect = 0.0
Identities = 470/949 (49%), Positives = 595/949 (62%), Gaps = 42/949 (4%)
Frame = +3
Query: 93 AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 272
A SFNVRDL+++ G+ A+GV+ LVD+ AT+ A++Q EY KR+K+V++RQ LS +GEK++
Sbjct: 3 ATSFNVRDLINSNGADAMGVRGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62
Query: 273 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 449
KRFGG ++L+L++ PHSFA A+RQCETLECL FPE ILDFGGSWLFHW+R V
Sbjct: 63 KRFGGTFDLQLSKNL-CPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 121
Query: 450 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 629
HSCCP+LDARD ARHQER++ M+K V K+ P+FC LKAEDCEVQ PYAISIH
Sbjct: 122 HSCCPVLDARDMARHQERMISMQKCVAHRPGKFESFESPDFCLLKAEDCEVQSPYAISIH 181
Query: 630 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 785
G YDMGF+ LC AMH HG +MLRGTMMFD+ ML++ G + DLNC W+K G
Sbjct: 182 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEGVMEDLNCRWTKEKGDPYGLRGA 241
Query: 786 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAV 953
+V FDF DESTLSY+HS+KN+KSFLT+ + IG Y+LERC I +GIMS+KI AV
Sbjct: 242 PCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIGNVQYVLERCVISYGIMSFKIFAV 301
Query: 954 SGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFK 1133
SG IP T++RHC+WFP+ RDY++IN D W KV+VKLDTVREVEEI FRC K
Sbjct: 302 SGKIPHTRLRHCVWFPKVRDYVNINPSDPR------IWSKVRVKLDTVREVEEICFRCPK 355
Query: 1134 DQKP-----WEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1298
D E I S L SSTIIVNGM+MMAGERLD DYH+VAFSL+L+ +RK
Sbjct: 356 DVSKIEVMGGESETCGIMSVL--YSSTIIVNGMTMMAGERLDVLDYHHVAFSLMLSARRK 413
Query: 1299 FEELQCVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVF 1478
F+ + W+GW +H K S +D FPSL+ YY FVEK+ C+VF
Sbjct: 414 FDMFGKAMNSLEWKGWVSHFFKSLWPSGDLRDLFGRYFPSLIRYYDKIEFVEKLTHCEVF 473
Query: 1479 ESELEALSGSKSWED---DAYSVXXXXXXXXXXXXSKTK-----EKLKEKDIQDEKPDVE 1634
+EL ++ K D +A V S K E+ KE+
Sbjct: 474 VNEL-GMTDDKEQRDVVAEAADVLKNTLLKVAIKMSLDKTFRPAEEKKEERTTTTTVTSS 532
Query: 1635 GGKPVHSQPNTHVVGDV--SPKVVIKDT-----DSRPGRMELRAQAKDEFVAYTRKLHSN 1793
V +P V G +P V ++T + GR+ +R +A E+ Y KL N
Sbjct: 533 AVGDVDERPAGTVSGPTIQAPSVTQENTVTSLSEPLDGRLAVRLEAMKEYKRYLLKLQKN 592
Query: 1794 AAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKR-SGWIFETNETYQVGFNG 1967
+NLA LW LCGG S S+N +ST L +++ DSL+N HK GW+F + Y VG+N
Sbjct: 593 TESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGGWLFPNDFEYMVGYNS 652
Query: 1968 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 2147
+GLG K P+E ++V+K C+L+N +A G A LMDGVAGCGKTT+I F
Sbjct: 653 SGLGEKRPNEVFLVNKDCVLNNNVLLANGV-PAQPPKGNINLMDGVAGCGKTTAIKRAFV 711
Query: 2148 AETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDECGLLH 2324
E+DLIVTAN+KSSE+I +F+D+PD+G+ VRTADSVLMH R+LFDE L+H
Sbjct: 712 FESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVH 771
Query: 2325 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVV 2504
F FGDSEQISF++RD+ F MKY +LS D S T+RCPKDVV
Sbjct: 772 FGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVV 831
Query: 2505 HLVKTVI-KGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKAS 2681
VK + K AR SKY+ W + S V +S+ V + L PD YLTMTQ DKAS
Sbjct: 832 ECVKIMARKVGARGSKYNNWFTTSAVRKSLGYH-KVSSINESPLRPDVHYLTMTQADKAS 890
Query: 2682 LLSKAKELHLNMS-----EKIKTVHEAQGISVPKVRLVRLKNTKCDLFS 2813
LLSKA+E S E IKT HE+QGISVPKV L R K+TKCDLF+
Sbjct: 891 LLSKARETRFRPSVSTIDEVIKTTHESQGISVPKVILWRGKSTKCDLFT 939
>gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 738 bits (1906), Expect = 0.0
Identities = 426/968 (44%), Positives = 579/968 (59%), Gaps = 31/968 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 443
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 791
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWTNLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1332 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1481
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1482 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1661
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKIDEEEFQDAIDIP 530
Query: 1662 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1823
N V D P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1824 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 2000
+ G G + + L D +IN H G W++ Y+VGFN +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGFNDSGLGPKFDDEL 648
Query: 2001 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2180
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2181 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2354
KS+E++R+ LF D+P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPDNPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2355 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGK 2534
FGD+EQISF +RD TF++KY L D IV T+RCP+DV+ V+T +K K
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDVISAVQT-LKKK 827
Query: 2535 A--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAK--- 2699
A R SKY GW+S S V RS+S ++ V L + YLTMTQ DKA+L+S+AK
Sbjct: 828 AGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQADKAALVSRAKDFP 886
Query: 2700 ELHLNMSEK-IKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRV 2876
EL EK IKTVHEAQG+SV LVRLK+TKCDLF E +CLVALTRH FEYL V
Sbjct: 887 ELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYCLVALTRHKITFEYLYV 946
Query: 2877 PGLKGDLI 2900
L GDLI
Sbjct: 947 GMLSGDLI 954
>gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 735 bits (1898), Expect = 0.0
Identities = 424/968 (43%), Positives = 579/968 (59%), Gaps = 31/968 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 443
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYHAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 791
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGMLPLLKCRWMKSGKGKSEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLRCPK 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1332 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1481
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTAISSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1482 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1661
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEAEKIDEEEFQDAIDIP 530
Query: 1662 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1823
N V D P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1824 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 2000
+ G G + + L D +IN H G W++ Y+VG+N +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYNDSGLGPKFDDEL 648
Query: 2001 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2180
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2181 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2354
KS+E++R+ LF ++P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2355 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGK 2534
FGD+EQISF +RD TF++KY L D IV T+RCP+DV+ V+T +K K
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDVISAVQT-LKKK 827
Query: 2535 A--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAK--- 2699
A R SKY GW+S S V RS+S ++ V L + YLTMTQ DKA+L+S+AK
Sbjct: 828 AGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQADKAALVSRAKDFP 886
Query: 2700 ELHLNMSEK-IKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRV 2876
EL EK IKTVHEAQG+SV LVRLK+TKCDLF E +CLVALTRH FEYL V
Sbjct: 887 ELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYCLVALTRHKVTFEYLYV 946
Query: 2877 PGLKGDLI 2900
L GDLI
Sbjct: 947 GMLSGDLI 954
>ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus]
gi|259651322|dbj|BAI40161.1| 1a protein [Melandrium
yellow fleck virus]
Length = 948
Score = 734 bits (1896), Expect = 0.0
Identities = 419/970 (43%), Positives = 582/970 (60%), Gaps = 37/970 (3%)
Frame = +3
Query: 114 DLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKRFGGAY 293
+L+ GS++ GV+ +VD AT+ +Q+E+ KR+K++ +R +LS QE + R R+GGAY
Sbjct: 5 NLIAERGSKSHGVEMVVDDQATKQVLEQVEHLKRSKRITVRNKLSPQEADAFRARYGGAY 64
Query: 294 ELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRGS-QVHSCCPI 467
ELKLTQE+ APHS A ALR E +CL FP E ++DFGGSW H+ R +VHSCCPI
Sbjct: 65 ELKLTQEYEAPHSLAGALRIAEHYDCLGQFPLEDPVIDFGGSWWHHYSREDYRVHSCCPI 124
Query: 468 LDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIHGGYDMG 647
L RDA RH+ERL M K++ P+FC KAEDC+VQ +AI IHGGYDMG
Sbjct: 125 LGVRDATRHEERLCRMRKLLEVKDFSQA----PDFCLNKAEDCKVQADWAICIHGGYDMG 180
Query: 648 FQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IVAFDFRDES 815
F+ LC AM+ HG +LRGT+MFD ML G I LNC W + ++ FDF +ES
Sbjct: 181 FKNLCKAMNSHGVRILRGTIMFDGAMLFDRQGTIPLLNCRWMREGSGSSEVIKFDFVNES 240
Query: 816 TLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIRHCIW 995
TLSY H+++N+ SFLT+ +G+T Y+LER + GIMSYKI A + P +RHC+W
Sbjct: 241 TLSYVHNWRNLGSFLTESVCCVGSTTYLLEREVLRCGIMSYKIIATNVKCPPETLRHCVW 300
Query: 996 FPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLRLIAS 1175
F Y+ +NV D+ ++ W+ V+V + TVREVEEIAFRCFK+ K W EN++ +AS
Sbjct: 301 FENISQYVSVNVPDDWSFAN---WKLVRVAISTVREVEEIAFRCFKENKDWAENMKAVAS 357
Query: 1176 TLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGWWNH 1355
LSAKSST+I+NG ++MAGER+D DYH VAFSL +N +K+E L+ + ++ W+GW+NH
Sbjct: 358 VLSAKSSTVIINGQAIMAGERIDILDYHLVAFSLTMNLYQKYERLRDYHDELEWKGWFNH 417
Query: 1356 C-TKWWSESTR------FQDFLATCFP--SLLDYYHSKVFVEKICECQVFESELEALSGS 1508
++ W + +LA FP L Y + +F+ KI + + FE + +S
Sbjct: 418 FKSRLWKGGKGVDGVGFIRGYLADKFPRLKLNTYMDTLMFITKISDVKEFECDSVPVSRL 477
Query: 1509 KSW---EDDAYSVXXXXXXXXXXXXS-KTKEKLKEKDIQDEKPDVEGGKP----VHSQPN 1664
+S+ ++DAY S K + +E + D D+E P V +P
Sbjct: 478 RSFFCDKNDAYERAVEEFLDAQDKKSRKAVVRKQEDEFVDASEDLETSGPVVVDVKEEPK 537
Query: 1665 T-HVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSG 1841
+G++ PKVV R+ A EF Y + H N +NL +LW L G G
Sbjct: 538 APTTIGNLDPKVV------------ARSGAISEFTEYCDRQHLNTTSNLHQLWTLMGCKG 585
Query: 1842 SDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYIVDKT 2018
D + + ++ D L+N H SG W++ Y VG+N +GL VK +E Y+VDKT
Sbjct: 586 -DQVHNKSVVDTYHRTDDLVNVHFPSGRWMYPHEYEYVVGYNDDGLSVKFDNELYVVDKT 644
Query: 2019 CILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEI 2198
CI+ N +AE + + DGVAGCGKTT+I + F E D++VTANRKS++++
Sbjct: 645 CIVSNQQKLAEACRGLSVPTCPVYMCDGVAGCGKTTAIKNTFQFERDVVVTANRKSADDV 704
Query: 2199 RDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXX 2372
R +F ++P ++ R++RTADS +MH R+L DE GL+H+
Sbjct: 705 RAAIFPENPNNEIATRYIRTADSAIMHGLPKCKRVLIDEAGLMHYGQLLAVAAISGCDEV 764
Query: 2373 XXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKA--RHS 2546
FGD+EQISF +RD TF+MK++ ++ D +VK TYRCP+DVV VK ++K K R S
Sbjct: 765 VAFGDTEQISFKSRDVTFRMKHNAINYDSRELVKTTYRCPQDVVDAVK-LLKRKCGNRGS 823
Query: 2547 KYHGWESKSNV-----VRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHL 2711
KY+ W SKS V RS+S+P + +E + YLTMTQ DKA+L ++AK+ L
Sbjct: 824 KYNDWVSKSTVRKSLYKRSISSPTQ------INIEVNKFYLTMTQSDKAALQTRAKDFSL 877
Query: 2712 N---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPG 2882
+ + IKTVHEAQGISV V LVRLK+TKCDLF E +CLVA+TRH R FEY
Sbjct: 878 SKDWIENNIKTVHEAQGISVDNVVLVRLKSTKCDLFKHEEYCLVAMTRHKRSFEYCYNGK 937
Query: 2883 LKGDLIEEAC 2912
L GDLI +AC
Sbjct: 938 LSGDLI-DAC 946
>gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 735 bits (1897), Expect = 0.0
Identities = 424/968 (43%), Positives = 579/968 (59%), Gaps = 31/968 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 443
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 791
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1332 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1481
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1482 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1661
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKIDEEEFQDAIDIP 530
Query: 1662 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1823
N V DV P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDVKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1824 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 2000
+ G G + + L D +IN H G W++ Y+VG+N +GL K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYNDSGLSPKFDDEL 648
Query: 2001 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2180
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDNLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2181 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2354
KS+E++R+ LF ++P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2355 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGK 2534
FGD+EQISF +RD TF++KY L D IV T+RCP+DV+ V+T +K K
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDVISAVQT-LKKK 827
Query: 2535 A--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAK--- 2699
A R SKY GW+S S V RS+S ++ V L + YLTMTQ DKA+L+S+AK
Sbjct: 828 AGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQADKAALVSRAKDFP 886
Query: 2700 ELHLNMSEK-IKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRV 2876
EL EK IKTVHEAQG+SV LVRLK+TKCDLF E +CLVALTRH FEYL V
Sbjct: 887 ELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYCLVALTRHKITFEYLYV 946
Query: 2877 PGLKGDLI 2900
L GDLI
Sbjct: 947 GMLSGDLI 954
>ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus]
gi|137252|sp|P27752.1|1A_CCMV RecName: Full=Replication
protein 1a; Includes: RecName: Full=ATP-dependent
helicase; Includes: RecName: Full=Methyltransferase
gi|331599|gb|AAA46369.1| 1a protein [Cowpea chlorotic
mottle virus]
Length = 958
Score = 733 bits (1891), Expect = 0.0
Identities = 420/966 (43%), Positives = 574/966 (59%), Gaps = 29/966 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 443
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 791
IHGGYDMG+ LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGYTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWTNLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1332 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1481
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1482 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1661
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKIDEEEFQDAIDIP 530
Query: 1662 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1823
N V D P+V + + P R A EF Y R+L NA +NL RLW
Sbjct: 531 NDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDCNAVSNLRRLWA 589
Query: 1824 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 2000
+ G G + + L D +IN H G W++ Y+VGFN +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGFNDSGLGPKFDDEL 648
Query: 2001 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2180
Y+VDK+CI N +++ D S L DGVAGCGKTT+I N L+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSASNIAEHLVVTANK 708
Query: 2181 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2354
KS+E++R+ LF +P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLPRCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2355 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGK 2534
FGD+EQISF +RD TF++KY L D IV T+RCP+DV+ V+T+ +G
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDVISAVQTLKRGG 828
Query: 2535 ARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAK---EL 2705
R SKY GW+S S V RS+S ++ V L + YLTMTQ DKA+L+S+AK EL
Sbjct: 829 NRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQADKAALVSRAKDFPEL 887
Query: 2706 HLNMSEK-IKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPG 2882
EK IKTVHEAQG+SV LVRLK+TKCDLF E +CLVALTRH FEYL V
Sbjct: 888 DKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYCLVALTRHKITFEYLYVGM 947
Query: 2883 LKGDLI 2900
L GDLI
Sbjct: 948 LSGDLI 953
>gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 728 bits (1880), Expect = 0.0
Identities = 422/968 (43%), Positives = 576/968 (59%), Gaps = 31/968 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 443
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 791
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF + STLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNGSTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1332 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1481
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1482 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1661
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEAEKIDEEEFQDAIDIP 530
Query: 1662 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1823
N V DV P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDVKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1824 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 2000
+ G G + + L D +IN H G W++ Y+VG+N +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYNDSGLGPKFDDEL 648
Query: 2001 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2180
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2181 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2354
KS+E++R+ LF ++P ++ + ADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPENPSSEIALSYKGPADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2355 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGK 2534
FGD+EQISF +RD TF++KY L D IV T+RCP+DV+ V+T +K K
Sbjct: 769 CKCQSFLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDVISAVQT-LKKK 827
Query: 2535 A--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAK--- 2699
A R SKY GW+S S V RS+S ++ V L + YLTMTQ DKA+L+S+AK
Sbjct: 828 AGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQADKAALVSRAKDFP 886
Query: 2700 ELHLNMSEK-IKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRV 2876
EL EK IKTVHEAQG+SV LVRLK+TKCDLF E +CLVALTRH FEYL V
Sbjct: 887 ELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYCLVALTRHKVTFEYLYV 946
Query: 2877 PGLKGDLI 2900
L GDLI
Sbjct: 947 GMLSGDLI 954
>ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|513125395|dbj|BAD98316.2|
1a protein [Cassia yellow blotch virus]
Length = 955
Score = 723 bits (1865), Expect = 0.0
Identities = 414/969 (42%), Positives = 577/969 (59%), Gaps = 32/969 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
MA ++ L+ +G+++ GV +VD+ ATQ Q+E+ +R+K++ IR +L+ E E
Sbjct: 1 MASLIDLNSLISKKGAESRGVLDIVDNQATQQVLSQVEHLRRSKKINIRNKLAPSEVEAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRGS- 443
+ R+GGA++L LTQE+ APHS A ALR E +C+D FP E I+DFGGSW H+ R
Sbjct: 61 KARYGGAFDLNLTQEYNAPHSLAGALRIAEHYDCMDSFPPEDRIIDFGGSWWHHYARKDF 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VH CCPIL RDAARH+ER+ + ++++ SS Y E P +FC KA DC VQ +AI
Sbjct: 121 RVHCCCPILGVRDAARHEERMCRLRRLLQ--SSDYEETP--DFCLNKARDCNVQADWAIC 176
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDF 803
IHGGYDMGF+ LC +M HG +L+GT+MFD ML ESGF+ L C W K G V FDF
Sbjct: 177 IHGGYDMGFKDLCHSMRSHGVRILKGTIMFDGAMLFDESGFLPLLKCRWKKEKGFVKFDF 236
Query: 804 RDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIR 983
+ESTLSY HS+ + SF T+ + IG+T Y+LER I+ IM+YKI A P+ +R
Sbjct: 237 ENESTLSYIHSWDKLGSFFTESVYRIGSTTYLLERELIKCNIMTYKIIATDLPCPKETLR 296
Query: 984 HCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLR 1163
HC+WF Y+ +NV + + WR+V+V + TVREVEEI+FRCFK+ K W EN++
Sbjct: 297 HCVWFENLSQYVAVNVPVDFNLCR---WRRVRVAVSTVREVEEISFRCFKENKEWTENMK 353
Query: 1164 LIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQG 1343
+AS LSAKSST+I+NG ++MAGERL DYH VAF+L LN K+E L+ ++ + W G
Sbjct: 354 AVASVLSAKSSTVIINGQAIMAGERLSIDDYHLVAFALTLNLYMKYENLRSFHEGLKWGG 413
Query: 1344 WWNH-CTKWW-------SESTRFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFESELE 1493
WWNH T++W + L FP L LD Y S F+ KI + FE +
Sbjct: 414 WWNHFLTRFWWRGDVPTDSRPWLVNLLGQWFPRLRLDTYAESCEFIAKISDVAEFECD-S 472
Query: 1494 ALSG--SKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPV----HS 1655
SG + + +A S+ K+K KEK+ ++P E +PV
Sbjct: 473 VPSGFLQRFFHSEADLQRRIQVELDTVKDSRDKKK-KEKEKASKEPKSE--EPVEEVFEE 529
Query: 1656 QPNTHVVGDVSPKV------VIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARL 1817
P+ + DV P V K T SR ++ E+ Y ++LH N+ +NL R+
Sbjct: 530 APDDFIRDDVKPATDGGTVCVDKSTVSRELSLK-------EYSNYCQRLHENSLSNLRRI 582
Query: 1818 WKLCGGSGSDNFVSTNCLNVLKLGDSLINFH-KRSGWIFETNETYQVGFNGNGLGVKSPD 1994
W L GG G+ + + L D LIN H SGW++ T + Y +G+N +GLG K
Sbjct: 583 WLLAGGKGT-VISNKSMLETYHRVDCLINAHIAGSGWLYPTEQEYTIGYNDDGLGPKQAG 641
Query: 1995 ENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTA 2174
E +IVDK+C++ N AS+A+ + + L DGVAGCGKTT+I + F+ E D+IVTA
Sbjct: 642 ETFIVDKSCVISNNASLAKASQGLKAPKCSVTLCDGVAGCGKTTAIKNTFSIEKDIIVTA 701
Query: 2175 NRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXX 2348
N+KS+ ++R+ +F + P ++ +F+RTADS LMH + R+L DE GLLHF
Sbjct: 702 NKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLPSCQRLLIDEAGLLHFGQVLAVA 761
Query: 2349 XXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIK 2528
FGDSEQISF +RD TF+ ++ ++ D +V TYRCP+DVV V + +
Sbjct: 762 AICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCPQDVVAAVVKMKR 821
Query: 2529 --GKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKE 2702
GK R SKY W S+S V +S+SA + L + +EP Y TMTQ KA+L+++AK+
Sbjct: 822 RTGKLRESKYSSWISRSKVEKSLSAR-PISSLNQIVIEPHKFYQTMTQSAKAALMTRAKD 880
Query: 2703 LHLNMS---EKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLR 2873
L S IKT HE+QGISV V VR K+TKCDL+ E +CLVA+TRH + FEY
Sbjct: 881 FQLPKSWIEANIKTAHESQGISVDHVVHVRDKSTKCDLYKDEEYCLVAMTRHKKTFEYCY 940
Query: 2874 VPGLKGDLI 2900
L GDL+
Sbjct: 941 NGELAGDLL 949
>ref|NP_041196.1| replicase [Brome mosaic virus] gi|137251|sp|P03588.1|1A_BMV RecName:
Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|58729|emb|CAA26228.1| unnamed
protein product [Brome mosaic virus]
Length = 961
Score = 719 bits (1857), Expect = 0.0
Identities = 414/970 (42%), Positives = 578/970 (59%), Gaps = 28/970 (2%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGADSQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 443
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 791
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKESKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1332 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1484
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1485 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKL--KEKDIQDEKPDV-EGGKPV 1649
+ +S +++ E+D + SK K K+ + Q+E D E P
Sbjct: 475 DSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEIPQEEFHDAPESSSPE 534
Query: 1650 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1829
+ V DV P + R R A EFV Y ++LH+N+ +NL LW +
Sbjct: 535 SVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHLWDIS 594
Query: 1830 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 2006
GG GS+ + + D ++N H +G W++ Y VG+N +GLG K DE YI
Sbjct: 595 GGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHADETYI 653
Query: 2007 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2186
VDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTANRKS
Sbjct: 654 VDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS 713
Query: 2187 SEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXX 2360
+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 714 AEDVRMALFPDTYNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVVAALSK 773
Query: 2361 XXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKA- 2537
FGD+EQISF +RD F++ + L D +V TYRCP+DV+ V ++K K
Sbjct: 774 CSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCPQDVIAAV-NLLKRKCG 832
Query: 2538 -RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHLN 2714
R +KY W S+S V RS++ GL V ++P+ YLTMTQ DKA+L ++AK+ ++
Sbjct: 833 NRDTKYQSWTSESKVSRSLTKRRITSGLQ-VTIDPNRTYLTMTQADKAALQTRAKDFPVS 891
Query: 2715 ---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPGL 2885
+ IKTVHEAQGISV V LVRLK+TKCDLF E +CLVALTRH + FEY L
Sbjct: 892 KDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDLFKHEEYCLVALTRHKKSFEYCFNGEL 951
Query: 2886 KGDLIEEACK 2915
GDLI K
Sbjct: 952 AGDLIFNCVK 961
>gb|ADW09019.1| replication protein 1a [Brome mosaic virus]
Length = 961
Score = 717 bits (1851), Expect = 0.0
Identities = 413/970 (42%), Positives = 577/970 (59%), Gaps = 28/970 (2%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGADSQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 443
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHFDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 791
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGTDEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1332 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1484
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1485 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKL--KEKDIQDEKPDV-EGGKPV 1649
+ +S +++ E+D + SK K K+ + Q+E D E P
Sbjct: 475 DSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEMPQEEFHDAPESSSPE 534
Query: 1650 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1829
+ V DV P + R R A EFV Y ++LH+N+ +NL LW +
Sbjct: 535 SVSDDVKPVTDVVPGAEVSVAVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHLWDIS 594
Query: 1830 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 2006
GG GS+ + + D ++N H +G W++ Y VG+N + LG K DE YI
Sbjct: 595 GGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHSLGPKHADETYI 653
Query: 2007 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2186
VDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTANRKS
Sbjct: 654 VDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS 713
Query: 2187 SEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXX 2360
+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 714 AEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCYRLLVDEAGLLHYGQLLVVAALSK 773
Query: 2361 XXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKA- 2537
FGD+EQISF +RD F++ + L D +V TYRCP+DV+ V ++K K
Sbjct: 774 CSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCPQDVIAAV-NLLKRKCG 832
Query: 2538 -RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHLN 2714
R +KY W S+S V RS++ GL V ++P+ YLTMTQ DKA+L ++AK+ ++
Sbjct: 833 NRDTKYQSWTSESKVSRSLTKRRITSGLQ-VTIDPNRTYLTMTQADKAALQTRAKDFPVS 891
Query: 2715 ---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPGL 2885
+ IKTVHEAQGISV V LVRLK+TKCDLF E +CLVALTRH + FEY L
Sbjct: 892 KDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDLFKHEEYCLVALTRHKKSFEYCFNGEL 951
Query: 2886 KGDLIEEACK 2915
GDLI K
Sbjct: 952 AGDLIFNCVK 961
>dbj|BAJ41520.1| 1a protein [Brome mosaic virus]
Length = 961
Score = 717 bits (1850), Expect = 0.0
Identities = 411/970 (42%), Positives = 578/970 (59%), Gaps = 28/970 (2%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGAASQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 443
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 791
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTVLRDGM 414
Query: 1332 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1484
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1485 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKL--KEKDIQDEKPDV-EGGKPV 1649
+ +S +++ E+D + SK K K+ + Q+E D E P
Sbjct: 475 DSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEIPQEEFHDAPESSSPE 534
Query: 1650 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1829
+ V DV P + R R A EFV Y ++LH+N+ +NL LW +
Sbjct: 535 SVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHLWDIS 594
Query: 1830 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 2006
GG GS+ + + D ++N H +G W++ Y VG+N +GLG K DE YI
Sbjct: 595 GGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHADETYI 653
Query: 2007 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2186
VDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTANRKS
Sbjct: 654 VDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS 713
Query: 2187 SEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXX 2360
+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 714 AEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVVAALSK 773
Query: 2361 XXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKA- 2537
FGD+EQISF +RD F++ + L D +V TYRCP+DV+ + ++K K
Sbjct: 774 CSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDVIAAI-NLLKRKCG 832
Query: 2538 -RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHLN 2714
R +KY W S+S V RS++ + + V ++P+ YLTMTQ DKA+L ++AK+ ++
Sbjct: 833 NRDTKYQSWTSESKVSRSLTKR-RIASVLQVTIDPNRTYLTMTQADKAALQTRAKDFPVS 891
Query: 2715 ---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPGL 2885
+ IKTVHEAQGISV V LVRLK+TKCDLF E +CLVALTRH + FEY L
Sbjct: 892 KDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDLFKHEEYCLVALTRHKKSFEYCFNGEL 951
Query: 2886 KGDLIEEACK 2915
GDLI K
Sbjct: 952 AGDLIFNCVK 961
>emb|CAA41361.1| 1a protein [Brome mosaic virus]
Length = 961
Score = 715 bits (1846), Expect = 0.0
Identities = 413/974 (42%), Positives = 576/974 (59%), Gaps = 32/974 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ S ++ L+ +G+ + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLISEKGAASQSALDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 443
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 791
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1332 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1484
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1485 ELEALSGSKS-WEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDI-------QDEKPDV-EG 1637
+ +S ++ W + V +KTK K+ + Q+E D E
Sbjct: 475 DSVPISRLRTFWTE----VDLFDRLEHEVQTAKTKRSKKKAIVPPAAEIPQEEFHDAPES 530
Query: 1638 GKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARL 1817
P + V DV P + R R A EFV Y ++LH+N+ +NL L
Sbjct: 531 SSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHL 590
Query: 1818 WKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPD 1994
W + GG GS+ + + D ++N H +G W++ Y VG+N +GLG K D
Sbjct: 591 WDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHAD 649
Query: 1995 ENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTA 2174
E YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTA
Sbjct: 650 ETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTA 709
Query: 2175 NRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXX 2348
NRKS+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 710 NRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVVA 769
Query: 2349 XXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIK 2528
FGD+EQISF +RD F++ + L D +V TYRCP+DV+ V ++K
Sbjct: 770 ALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDVIAAV-NLLK 828
Query: 2529 GKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKE 2702
K R +KY W S+S V RS+ A + + V ++P+ YLTMTQ DKA+L ++AK+
Sbjct: 829 RKCGNRDTKYQSWTSESKVSRSL-AKRRITSVLQVTIDPNRTYLTMTQADKAALQTRAKD 887
Query: 2703 LHLN---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLR 2873
++ + IKTVHEAQGISV V LVRLK+TKCDLF E +CLVALTRH + FEY
Sbjct: 888 FPVSKDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDLFKHEEYCLVALTRHKKSFEYCF 947
Query: 2874 VPGLKGDLIEEACK 2915
L GDLI K
Sbjct: 948 NGELAGDLIFNCVK 961
>gb|ABF83485.1| 1a [Brome mosaic virus]
Length = 961
Score = 715 bits (1846), Expect = 0.0
Identities = 412/975 (42%), Positives = 579/975 (59%), Gaps = 33/975 (3%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGAASQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 443
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 791
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1332 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1484
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1485 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKLKEKDI-------QDEKPDV-E 1634
+ +S +++ E+D + +KTK K+ + Q+E D E
Sbjct: 475 DSVPISRLRTFWTEEDLFD-----RLEHEVQTAKTKRSKKKAIVPPAAEIPQEEFHDAPE 529
Query: 1635 GGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLAR 1814
P + V DV P + R R A EFV Y ++LH+N+ +NL
Sbjct: 530 SSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRH 589
Query: 1815 LWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSP 1991
LW + GG GS+ + + D ++N H +G W++ Y VG+N +GLG K
Sbjct: 590 LWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHA 648
Query: 1992 DENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVT 2171
DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVT
Sbjct: 649 DETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVT 708
Query: 2172 ANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXX 2345
ANRKS+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 709 ANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVV 768
Query: 2346 XXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVI 2525
FGD+EQISF +RD F++ + L D +V TYRCP+DV+ V ++
Sbjct: 769 AALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDVIAAV-NLL 827
Query: 2526 KGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAK 2699
K K R +KY W S+S V RS++ + + V ++P+ YLTMTQ DKA+L ++AK
Sbjct: 828 KRKCGNRDTKYQSWTSESKVSRSLTKR-RITSVLQVTIDPNRTYLTMTQADKAALQTRAK 886
Query: 2700 ELHLN---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYL 2870
+ ++ + IKTVHEAQGISV V LVRLK+TKCDLF E +CLVALTRH + FEY
Sbjct: 887 DFPVSKDWIDGHIKTVHEAQGISVDNVALVRLKSTKCDLFKHEEYCLVALTRHKKSFEYC 946
Query: 2871 RVPGLKGDLIEEACK 2915
L GDLI K
Sbjct: 947 FNGELAGDLIFNCVK 961
>ref|NP_659000.1| 1a protein [Broad bean mottle virus] gi|401312|sp|Q00020.1|1A_BBMV
RecName: Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|210663|gb|AAA42740.1| 1a
protein [Broad bean mottle virus]
Length = 966
Score = 713 bits (1841), Expect = 0.0
Identities = 420/977 (42%), Positives = 579/977 (59%), Gaps = 40/977 (4%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ N+ L+ G+ G +V++ T++ QIE+S+R+K+V IR +LSV E +
Sbjct: 1 MSSFVNLESLISERGANCRGADEIVNNETTRILTSQIEHSQRSKKVNIRNKLSVAECDAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRG-S 443
R R+GGA+++ LT E+TAPHS A ALR E +C+D FP E +I+DFGGSWL H+ RG S
Sbjct: 61 RARYGGAFDVNLTHEYTAPHSLAGALRVAEHYDCIDSFPPEDKIIDFGGSWLHHYSRGDS 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VHSCCPIL RDA RH+ER+ + KMV+ +S ++ ++P +FC KAEDC VQ +AI
Sbjct: 121 RVHSCCPILGPRDATRHEERMCRLRKMVQ-TSDRFVDVP--DFCLNKAEDCNVQADWAIC 177
Query: 624 IHGGYDMGFQTLCSAMH---KHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RN 782
IHGGYDMGFQ LC AMH + G +L+GT+MFD ML G + L C W +
Sbjct: 178 IHGGYDMGFQGLCKAMHAPLERG--ILQGTIMFDGAMLFDRQGELPLLQCRWQRVGTGSK 235
Query: 783 GIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGD 962
+ FDF +ESTLSY H +KN+ SFLT+ ++ IG T Y+LER ++ IM+YKI A +
Sbjct: 236 EQIKFDFINESTLSYVHDWKNLGSFLTESTYSIGGTTYLLERMLLKCSIMTYKIIATNVR 295
Query: 963 IPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQK 1142
P +RHCIWF YL + + ++ W+ V+V TVREVEEI+FRCFK+ K
Sbjct: 296 CPPESLRHCIWFENISQYLAVQIPIGYNLND---WKTVRVARATVREVEEISFRCFKENK 352
Query: 1143 PWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVY 1322
W EN+R +AS LSAKSST+I+NG S+M+GERLD +YH VAFSL LN +K+E+L+
Sbjct: 353 DWTENMRSVASILSAKSSTVIINGQSIMSGERLDVLEYHLVAFSLTLNLYQKYEKLRNFQ 412
Query: 1323 KKIVWQGWWNH--CTKWW------SESTRFQDFLATCFP--SLLDYYHSKVFVEKICECQ 1472
++ W+GW NH WW +E ++FLA P L Y S F+ KI E +
Sbjct: 413 GELEWKGWANHFKTRLWWCGRTVSTEGGFLRNFLADKIPWLKLNTYADSLDFITKISEVE 472
Query: 1473 VFESELEALSGSKSW----EDDAYSVXXXXXXXXXXXXSKTKEKLKE-KDIQDEKPDVEG 1637
FE + S +S+ E+ +K E KE D D +
Sbjct: 473 SFEVDSVPTSRLRSFFQKEENIVERAASEIMSANARRIAKKAEMSKEFDDFVDAPEEFAP 532
Query: 1638 GKPVHSQPNTHVVGDV--------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSN 1793
V NT V DV + + ++ D D+ L+ A +EF Y+++LH N
Sbjct: 533 EDVVEEVINTPVTQDVKLRQSKPETARSIVLDPDA-----VLKNGAINEFADYSKRLHEN 587
Query: 1794 AAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGN 1970
+NL LW L G G++ + + D ++N H +G W++ Y VG+N
Sbjct: 588 TVSNLRHLWTLMGCRGNE-IHNKSVAETYHRVDDMVNVHFPNGHWMYPLKYEYTVGYNDG 646
Query: 1971 GLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNA 2150
GLG K +E Y+VDKTC N +IA+ K + + V++DGVAGCGKTT+I + F
Sbjct: 647 GLGEKFENELYVVDKTCSCANAKAIADACKKVSAPTCSVVMVDGVAGCGKTTAIKETFRF 706
Query: 2151 ETDLIVTANRKSSEEIRDKLFKDSPD--LGKRFVRTADSVLMHDCITAPRILFDECGLLH 2324
E D+IVTANRKS+E++R +F D+ D + + VRTADS +MH R+L DE GLLH
Sbjct: 707 EKDIIVTANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLPECHRLLVDEAGLLH 766
Query: 2325 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVV 2504
+ FGD+EQISF +RD TF+MKY + D+ IV T+RCP+DVV
Sbjct: 767 YGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKTFRCPQDVV 826
Query: 2505 HLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKA 2678
VK ++K K R SKY+GW S S V +S+S +V + V +E YLTMT+ DKA
Sbjct: 827 SAVK-ILKRKCANRSSKYNGWVSSSKVEKSLSKS-RIVSINQVSMEKHKFYLTMTEADKA 884
Query: 2679 SLLSKAKELHLN---MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRH 2849
+L S+AK++ L+ + ++TVHEAQG +V V LVRLK+TKCDLF +E +CLVALTRH
Sbjct: 885 ALCSRAKDVGLDKTWVESNMETVHEAQGKAVDHVVLVRLKSTKCDLFKSEEYCLVALTRH 944
Query: 2850 TRRFEYLRVPGLKGDLI 2900
R FEYL L GDLI
Sbjct: 945 KRTFEYLYNGDLGGDLI 961
>ref|NP_689392.1| 1a protein [Spring beauty latent virus] gi|22531640|dbj|BAC10645.1|
1a protein [Spring beauty latent virus]
Length = 958
Score = 711 bits (1834), Expect = 0.0
Identities = 408/964 (42%), Positives = 575/964 (59%), Gaps = 27/964 (2%)
Frame = +3
Query: 90 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 269
M+ S ++ L+ +G+ + V+ +VD+ A ++ Q++Y+ R+K++ IR +LS +E +
Sbjct: 1 MSNSLDLLKLISEKGAASRSVEDIVDNQAAKILNAQVDYANRSKKINIRNKLSPEEADAF 60
Query: 270 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHW-KRGS 443
R R+GGA++L LTQ++ APHS A ALR E +CL+ FP + I+DFGGSW H+ +R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLENFPSDDPIIDFGGSWWHHYSRRDN 120
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
+VH C PIL RDA R +ERL + ++++ S+Y ELP NFC KAE+C+VQ +AI
Sbjct: 121 RVHCCTPILGVRDACRQEERLCRLRRLLQ--DSEYDELP--NFCMNKAEECKVQADWAIC 176
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 791
IHGGYDMGF+ LC AM+ HG +LRGT+MFD ML G + L C W + ++ +V
Sbjct: 177 IHGGYDMGFKGLCKAMNSHGVRILRGTIMFDGAMLFDREGRLPLLKCRWKREGSGKSEVV 236
Query: 792 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 971
FDF +ESTLSY HS+ N+ SFLT+ IG T Y++ER I+ IM+YKI A + P
Sbjct: 237 KFDFENESTLSYVHSWANLGSFLTESVCTIGATTYMIERELIKCNIMTYKIVATNLRCPV 296
Query: 972 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1151
K+RHCIWF Y+ +N+ D ++ W+ +V TVREVEEIAFRCFK+ K W
Sbjct: 297 EKLRHCIWFENISQYVAVNIPDGWSLTK---WKNARVARSTVREVEEIAFRCFKENKDWT 353
Query: 1152 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1331
EN+R +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L +N +K+E ++ ++ +
Sbjct: 354 ENMRSVASILSAKSSTVIINGQAIMAGERLDLEDYHLVAFALTMNLYQKYERIRAIHDGM 413
Query: 1332 VWQGWWNHCTK--WW------SESTRFQDFLATCFPSL-LDYYH-SKVFVEKICECQVFE 1481
W+GW +H WW S+ + FL++ FP L LD Y SK F+EKI + + FE
Sbjct: 414 QWKGWVDHFKTRIWWNGDVGGSKVGVIRSFLSSHFPFLRLDSYEDSKCFLEKIVDVKEFE 473
Query: 1482 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1661
S+ S + SK +EK K K++ E +V + P
Sbjct: 474 SDSVPSSLLSRFFSGNEDFEKRVDDTVKSARSKREEKKKLKELVLESSEVY--EDAVDAP 531
Query: 1662 NTHVVGDVSP----KVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1829
+ V D P +V D D +++ A EF Y ++L NA +NL R+W L
Sbjct: 532 SESVRDDDKPETGREVRGTDCDLSSSDCNVKSFAIKEFADYNQRLSDNAVSNLRRIWTL- 590
Query: 1830 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 2006
G ++ ST+ L D ++N H G W++ Y VGFN +GLG + DE Y+
Sbjct: 591 AGCNKESVNSTSILETYHRIDDMLNIHYPDGRWLYPNKYEYMVGFNDSGLGYRFADELYL 650
Query: 2007 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2186
VDKTC + N IA+ + + L DGVAGCGKTT+I F++ TDLIVTANRKS
Sbjct: 651 VDKTCGIANCEEIAKACKALKAPNCSITLCDGVAGCGKTTAIKAAFDSSTDLIVTANRKS 710
Query: 2187 SEEIRDKLFKD-SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXX 2363
+E++R+ LF D + + VRTADS +MH R+L DE GLLH+
Sbjct: 711 AEDVREALFGDVNSKIANEVVRTADSAIMHGLPKCSRLLIDEAGLLHYGQLLAVAALCGC 770
Query: 2364 XXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVHLVKTVIKGKA-- 2537
FGD+EQISF +RD TF+ +++ + D +V T+RCP+DV+ +K +K K
Sbjct: 771 ETVLAFGDTEQISFKSRDVTFKFRHAVIEYDRRDVVTETFRCPEDVISAIKK-LKRKCGN 829
Query: 2538 RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYDKASLLSKAKELHLN- 2714
R SKY W ++S+V S+ V + V +E YLTMTQ DKA+L+S+AK+ ++
Sbjct: 830 RDSKYLSWRTQSSVKTSLGMR-SVSSVTQVNIEKHKFYLTMTQADKAALVSRAKDFPVDK 888
Query: 2715 --MSEKIKTVHEAQGISVPKVRLVRLKNTKCDLFSAEAHCLVALTRHTRRFEYLRVPGLK 2888
+ + IKTVHEAQG+SV V LVRLK+ KCDLF E +CLV LTRH R FEYL L
Sbjct: 889 TWVDKHIKTVHEAQGVSVDHVVLVRLKSVKCDLFKTEEYCLVGLTRHKRTFEYLYNGDLG 948
Query: 2889 GDLI 2900
GDLI
Sbjct: 949 GDLI 952
>gb|AER35120.1| putative RNA helicase and methyltransferase [Cucumber mosaic virus]
Length = 990
Score = 699 bits (1803), Expect = 0.0
Identities = 419/1001 (41%), Positives = 572/1001 (57%), Gaps = 65/1001 (6%)
Frame = +3
Query: 99 SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 278
SFN+ +LV + G + + ALVD A + ++Q+++ +R ++V+IR L+V++ E IR R
Sbjct: 5 SFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGRKVYIRNVLNVKDSEVIRNR 64
Query: 279 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-----ILDFGGSWLFHWKRGS 443
+GG Y+L LTQ+ APH A ALR CETL+CLD FP +LDFGGSW+ H+ RG
Sbjct: 65 YGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGLRQDLVLDFGGSWVTHYLRGH 124
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
VH C P L RD RH ERL++M K++ ++ + P+FC A DCEVQ +AIS
Sbjct: 125 NVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQF-DGRQPDFCTHPAADCEVQAHFAIS 183
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 785
IHGGYDMGF+ LC AM+ HG +L+GTMMFD M+ + G I +LNC W K
Sbjct: 184 IHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQGVIPELNCQWRKIRSAFSETE 243
Query: 786 -------------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILER 908
+VAFDF +EST+SY HS++N+KSF+TDQ++ Y +ER
Sbjct: 244 DVTSLSGKIESTHVRKFKTMVAFDFINESTMSYVHSWENIKSFMTDQTYSYKGMTYGIER 303
Query: 909 CTIEFGIMSYKITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKL 1088
C I GIM+YKI V G P IRHCIWFP +DY+ + + +S + + W+ V++
Sbjct: 304 CVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIKDYVGLKIPASSDL---VKWKTVRILT 360
Query: 1089 DTVREVEEIAFRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVA 1268
T+RE EEIA RC+ D+K W E ++I LSAKSSTI++NGMSM +GER+D DYHY+
Sbjct: 361 STLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSSTIVINGMSMQSGERIDIEDYHYIG 420
Query: 1269 FSLLLNCKRKFEELQCVY----KKIVWQGWWNHCTKWWSESTR-----FQDFLATCFPSL 1421
F++LL+ K K+E+L +Y I+W KW++ TR F + FP+L
Sbjct: 421 FAILLHTKMKYEQLGKMYDMWNASIIW--------KWFATLTRPLRVFFSGVVRVLFPTL 472
Query: 1422 LDYYHSKVFVEKICECQVFESELEALSGSKSWE--DDAYSVXXXXXXXXXXXXSKTKEKL 1595
K F+ K+ F E + G + W+ A V ++ EKL
Sbjct: 473 RP-REEKEFLIKLSTFVTFNGEC-SFDGGEEWDVISSAAFVAAQAVTDGKVLAAQKAEKL 530
Query: 1596 KEKDIQDEKPDVE-GGKPVHSQPNTHVVGDVSPK--------VVIKDTDSRPGRMELRAQ 1748
EK Q P +E G P S P + DV K + T S R+ RA
Sbjct: 531 AEKLAQ---PVIEVSGSPETSSPTSDDTDDVCGKEREVSELDSLSVQTRSPVTRVAERAT 587
Query: 1749 AKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLK---LGDSLINFHKRS 1919
A E+ AY ++LH +NL R+W + GG N + N V D ++N H +
Sbjct: 588 AMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKKNTLEGNLKFVFDTYFTVDPMVNVHFST 647
Query: 1920 G-WIFETNE--TYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFV 2090
G W+ E Y VGFN GLG KS E YIV+ C++ N S++ + T
Sbjct: 648 GRWMRPVPEGVVYSVGFNERGLGPKSEGELYIVNSECVVCNSESLSAITRSLQAPTGTIS 707
Query: 2091 LMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDL-GKRFVRTADSVL 2267
+DGVAGCGKTT+I F+ TD+IVTAN+KS++++R LF+ S FVRTADSVL
Sbjct: 708 QVDGVAGCGKTTAIKSIFDPTTDMIVTANKKSAQDVRMALFQSSDSKEACTFVRTADSVL 767
Query: 2268 MHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQL 2447
+++C T R+L DE LLHF FGDSEQI+F +RD +F M++S++
Sbjct: 768 LNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAFSSRDASFDMRFSKI 827
Query: 2448 SVDESTIVKHTYRCPKDVVHLVK---TVIKGKARHSKYHGWESKSNVVRSVSAPIDVVGL 2618
DE++ T+R P+DVV LV+ T K HSKY W S+S V RSV++ V +
Sbjct: 828 IPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTRWVSQSKVKRSVTSRA-VASV 886
Query: 2619 PGVKLEPDWVYLTMTQYDKASLLSKAKELHLN---MSEKIKTVHEAQGISVPKVRLVRLK 2789
V L+ Y+TMTQ DKASL+S+AKE++L SE+IKTVHE+QGIS V LVRLK
Sbjct: 887 TLVDLDSSRFYVTMTQADKASLISRAKEMNLPKAFWSERIKTVHESQGISEDHVTLVRLK 946
Query: 2790 NTKCDLFSAEAHCLVALTRH--TRRFEYLRVPGLKGDLIEE 2906
+TKCDLF ++CLVALTRH T R+EY V G GDLI E
Sbjct: 947 STKCDLFKKFSYCLVALTRHKVTFRYEYCGVLG--GDLIAE 985
>ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus]
gi|224492618|emb|CAT02556.1| 1a protein [Gayfeather mild
mottle virus]
Length = 988
Score = 698 bits (1801), Expect = 0.0
Identities = 416/992 (41%), Positives = 561/992 (56%), Gaps = 58/992 (5%)
Frame = +3
Query: 99 SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 278
+FN+ +LV + G + + ALVD +A + ++Q+++ +R ++V+IR L V++ E IR R
Sbjct: 5 AFNINNLVASNGDKGLMANALVDKIAHEQLEEQLQHQRRGRKVYIRNVLDVKDSEIIRSR 64
Query: 279 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-----ILDFGGSWLFHWKRGS 443
+GG Y+L LTQ+ APH A ALR CETL+CLDFFP +LDFGGSW+ H+ RG
Sbjct: 65 YGGKYDLHLTQQEQAPHGLAGALRLCETLDCLDFFPNSGLRQDLVLDFGGSWVTHFLRGH 124
Query: 444 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 623
VH C P L RD RH ERL+ M K + K+ E PNFC A DC+V+ +AIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLMTMRKAILNDPQKF-EGRQPNFCTSPAADCDVKAHFAIS 183
Query: 624 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKR-------- 779
IHGGYDMGFQ LC AMH HG +L+GTMMFD ML GFI DL C W K
Sbjct: 184 IHGGYDMGFQGLCQAMHAHGTTILKGTMMFDGAMLFDTEGFIPDLKCKWKKIKPFTFEKE 243
Query: 780 -------------------NGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYIL 902
N ++AFDF DESTLSY H ++NVKSFLTDQ++ Y +
Sbjct: 244 DQTSKVGKLNSVVFSAARVNTLIAFDFVDESTLSYVHEWENVKSFLTDQTYHYKGMTYGI 303
Query: 903 ERCTIEFGIMSYKITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKV 1082
ERC I+ GIM+YKI A G P IRHCIWFP +DY+ + + + + + W+ V++
Sbjct: 304 ERCLIQNGIMTYKIIATPGSCPPELIRHCIWFPSLKDYVGLKIPTSQDL---VEWKTVRL 360
Query: 1083 KLDTVREVEEIAFRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHY 1262
L T+RE EEIA RC+ D+K W E ++I LS+KSSTI++NGMSM +GER++ +DYHY
Sbjct: 361 PLSTLRETEEIAMRCYNDKKNWMEQFKVILGVLSSKSSTIVINGMSMQSGERVEISDYHY 420
Query: 1263 VAFSLLLNCKRKFEELQCVYKKIVWQGWWNH--CTKWWSESTR-FQDFLATCFPSL---L 1424
+ F++LL+ K K+E+L +Y WN K+++ TR + FL+ C +L L
Sbjct: 421 IGFAILLHTKMKYEQLGKMY------DMWNSGVIRKFFASLTRPLRVFLSGCVKTLFPTL 474
Query: 1425 DYYHSKVFVEKICECQVFESELEALSGSKSWE---DDAYSVXXXXXXXXXXXXSKTK--- 1586
K F+ K+ F +E+ + + W+ AY+ + K
Sbjct: 475 RPRDEKEFLVKLSTFVTF-NEVCQVDLNAEWDVVTAAAYTAEWAVEDGNTLAAERKKQAD 533
Query: 1587 EKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFV 1766
EK E I DE G + + T + + + + T S R+ RA A E+
Sbjct: 534 EKASEPVITDETEHQTSGDGLDASERTDLPDPM--QSLSTQTKSPETRIAQRATAMLEYT 591
Query: 1767 AYTRKLHSNAAANLARLWKLCGGSGSDNFVSTN---CLNVLKLGDSLINFHKRSG-WIFE 1934
AY +LH+N +NLAR+W GG N + N + D L+N H R+G W+
Sbjct: 592 AYETQLHNNTVSNLARIWCSAGGDNKTNSLEGNLHLVFDTYFAVDPLVNVHFRNGQWMRR 651
Query: 1935 TNE--TYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVA 2108
+ Y VG+N GLG K E YIV+ C++ N +A+ + S T L+DGVA
Sbjct: 652 VPDGIHYSVGYNETGLGQKMEGELYIVNADCVIANSQPLAQSTRGLLAPSGTISLVDGVA 711
Query: 2109 GCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFK--DSPDLGKRFVRTADSVLMHDCI 2282
GCGKTT+I FN TDLIVTAN+KS+ ++R LF DS + FVRTADSVL++D
Sbjct: 712 GCGKTTAIKKMFNPATDLIVTANKKSALDVRQALFNSTDSKE-ATTFVRTADSVLLNDAS 770
Query: 2283 TAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDES 2462
R+L DE LLHF FGDSEQI+F +RD +F M+ S+L DE
Sbjct: 771 DVSRVLIDEVVLLHFGQLCAVMAKLKAVRAICFGDSEQIAFNSRDASFDMRNSKLLPDEV 830
Query: 2463 TIVKHTYRCPKDVVHLVK---TVIKGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKL 2633
+ T+R P+DVV +VK T K H+KY W S+S V RSVS V + V L
Sbjct: 831 SSADTTFRSPQDVVPIVKLMATKALPKGTHTKYTRWVSQSKVQRSVSTR-SVASVTMVDL 889
Query: 2634 EPDWVYLTMTQYDKASLLSKAKELHLN---MSEKIKTVHEAQGISVPKVRLVRLKNTKCD 2804
D Y+TMTQ DKA+L+S+AKEL+++ + IKT HE+QGIS V LVRLK TKCD
Sbjct: 890 SEDRFYITMTQADKAALISRAKELNMSKRFVENNIKTTHESQGISEDHVTLVRLKTTKCD 949
Query: 2805 LFSAEAHCLVALTRHTRRFEYLRVPGLKGDLI 2900
LF +CLVA+TRH F Y V L GDLI
Sbjct: 950 LFKKFEYCLVAVTRHKSTFRYEHVGDLPGDLI 981