BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00001254
         (1287 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   180   4e-73
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   158   2e-56
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   159   1e-55
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   130   5e-55
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...   138   1e-54
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo...   138   1e-54
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   130   1e-54
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   125   2e-54
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   134   2e-54
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            124   2e-54
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   130   7e-54
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   130   9e-54
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   130   9e-54
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         122   9e-54
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           122   9e-54
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo...   132   1e-53
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     127   2e-53
gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposo...   131   3e-53
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   159   3e-53
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   129   3e-53

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttata]
          Length = 598

 Score =  152 bits (385), Expect(2) = 4e-73
 Identities = 73/99 (73%), Positives = 84/99 (84%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRTLLERVRSML  SGL K FWGEA+LTA Y+INRSPS+PL+G +PE 
Sbjct: 302 HTPQQNGVAERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGDLPES 361

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V+ GK++D SNL VFG +AF H K DKLEPR VKC+FLG
Sbjct: 362 VWCGKKVDLSNLHVFGYAAFVHHKGDKLEPRFVKCIFLG 400



 Score =  152 bits (383), Expect(2) = 4e-73
 Identities = 71/96 (73%), Positives = 81/96 (84%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            DSC+LGK + V FP  P PN S  +EILEY+HADVWGP SV T+GG+RYFLS+IDD+SRK
Sbjct: 179  DSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSRK 238

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            V+VFLLK KSDVFD FK WKTLIENQTGK+IK LRT
Sbjct: 239  VFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRT 274



 Score =  180 bits (456), Expect = 3e-47
 Identities = 82/116 (70%), Positives = 99/116 (85%), Gaps = 1/116 (0%)
 Frame = -1

Query: 462 LHDYQLVRDRARR-NIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVDWLN 286
           L DYQL RDR RR ++R+P  FDDFH+ S VF+VF+S+D +EPKSY++ALKS  S +WLN
Sbjct: 483 LSDYQLARDRPRREHVRKPKHFDDFHLASHVFNVFESLDGNEPKSYKDALKSDKSTEWLN 542

Query: 285 AMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESVRFKARLVAKGFTQK 118
           +MN+EMNSLHVN TW LVPKP NCSVVDC WLFKVKNE +S+++KARLVAKGFTQK
Sbjct: 543 SMNDEMNSLHVNQTWELVPKPVNCSVVDCNWLFKVKNEVDSIKYKARLVAKGFTQK 598


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  140 bits (353), Expect(2) = 2e-56
 Identities = 67/99 (67%), Positives = 79/99 (79%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           YTPQQNG+AERMNRT+LERVR ML+ SGLSK FW EA  TA ++INRSPS  L  K P+ 
Sbjct: 546 YTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQE 605

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
            +TGK  D+ +LKVFGC+A+ H K DKLEPRAVKC+FLG
Sbjct: 606 KWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLG 644



 Score =  108 bits (271), Expect(2) = 2e-56
 Identities = 49/96 (51%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + CV GK +RVKF  +    ++     L+Y+H+D+WGP+ V + GG+RYFL++IDD+SRK
Sbjct: 427  EHCVFGKATRVKFAKAIHETQNQ----LDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRK 482

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW++ LKNKS+ F  FK+WK L+E QT +K+K LRT
Sbjct: 483  VWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRT 518



 Score =  158 bits (399), Expect = 2e-38
 Identities = 79/157 (50%), Positives = 107/157 (68%), Gaps = 3/157 (1%)
 Frame = -1

Query: 462  LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVDWLNA 283
            L  Y LVRDR +R ++ P R+    MT+F  SV + I + EPK+Y+EA+ S  +  W+ A
Sbjct: 730  LESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKA 789

Query: 282  MNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEG 112
            + EEM+SL  N TW LV KP +  VV  KW+FK K      E+ R+KARLVAKGF+QKEG
Sbjct: 790  IQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEG 849

Query: 111  IDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
            +DY EIF+PVVK +++R++LA  A  + EL Q+DVKT
Sbjct: 850  VDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKT 886


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 634

 Score =  124 bits (311), Expect(2) = 1e-55
 Identities = 59/98 (60%), Positives = 76/98 (77%)
 Frame = -2

Query: 992 TPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEFV 813
           TPQ+NG+AER NRT+LERVR ML  +GL K FW EAV +A Y INR PS  L  K P+ V
Sbjct: 235 TPQKNGLAERFNRTILERVRCMLNHAGLPKSFWVEAVSSAVYCINRCPSTALEFKTPQEV 294

Query: 812 FTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           ++G+++D+S L+VFGC A+AH K DKLEPRA+K +F+G
Sbjct: 295 WSGRKVDYSELRVFGCIAYAHIKQDKLEPRALKFIFIG 332



 Score =  122 bits (306), Expect(2) = 1e-55
 Identities = 53/96 (55%), Positives = 74/96 (77%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + CV+GK SR+KF  S      +S  +L+Y+H+D+WGP+   +HGG+RYFLS++DDFSRK
Sbjct: 115  EHCVMGKASRLKFSTST----HSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRK 170

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VWV+ LK K++VFD FK+WK L+E QTG+ +K LRT
Sbjct: 171  VWVYFLKQKNEVFDRFKEWKVLVETQTGRNLKKLRT 206



 Score =  159 bits (401), Expect = 2e-39
 Identities = 81/158 (51%), Positives = 104/158 (65%), Gaps = 4/158 (2%)
 Frame = -1

Query: 462 LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSV-FDSIDNSEPKSYEEALKSKNSVDWLN 286
           +  Y L RDR RR  + P R+    + SF F+V  D  D+ EPKSY EA++SK+   WL 
Sbjct: 419 IQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLK 478

Query: 285 AMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKE 115
           AM EEM SL  N TWILV KP    +V  KW+FK K      E  RFK RLVA+GFTQ+E
Sbjct: 479 AMKEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQRE 538

Query: 114 GIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
           G+DY EIF+PVVK  ++R++LA+   F+ EL+QMDV+T
Sbjct: 539 GLDYKEIFSPVVKHNSIRMILAMVTHFDMELEQMDVRT 576


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  130 bits (326), Expect(2) = 5e-55
 Identities = 61/99 (61%), Positives = 78/99 (78%)
 Frame = -2

Query: 995  YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
            +TPQQNGVAERMN+TL++R R M   +GLSKKFW EAV TAAY++NRSPS  +  K P+ 
Sbjct: 900  HTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQE 959

Query: 815  VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
            V++GK  ++S LK+FGC A+AH    KLEPRA+KC+FLG
Sbjct: 960  VWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLG 998



 Score =  114 bits (285), Expect(2) = 5e-55
 Identities = 49/96 (51%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            ++CV+GK  RVKF +        ++ +LEY+H+D+WGP+ V +H G RY+++ IDDFSRK
Sbjct: 781  ETCVMGKQRRVKFSMG----SHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRK 836

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VWV+ LK K +VF  FK+WKT++E +TGK +K LRT
Sbjct: 837  VWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRT 872



 Score =  125 bits (313), Expect = 3e-27
 Identities = 68/154 (44%), Positives = 97/154 (62%), Gaps = 9/154 (5%)
 Frame = -1

Query: 435  RARRNIRQPARFDDF------HMTSFVFSVFDSIDNSEPKSYEEALKSKNSVDWLNAMNE 274
            R RR IR+P R+ D       +  +F  +V + I   EP+SY+EA++SK+S  WL++M++
Sbjct: 1089 RPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDD 1148

Query: 273  EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDY 103
            EM SL  N TW LVP P     VDCKWLFK+K   +E E  ++K+RLVAK          
Sbjct: 1149 EMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKSRLVAK---------- 1198

Query: 102  TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
              +F+PVVK  ++R++LA+ + FN EL Q+DVKT
Sbjct: 1199 --VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKT 1230


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 780

 Score =  138 bits (348), Expect(2) = 1e-54
 Identities = 68/99 (68%), Positives = 79/99 (79%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNG+AERMNRT+LERVR ML  SGLSKKFWGEA  TAAY+INR PS  L+ K P  
Sbjct: 572 HTPQQNGLAERMNRTILERVRCMLLGSGLSKKFWGEAATTAAYLINRCPSSALNNKTPME 631

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
            + GK +D+SNL+VFG  A+AH K  KLEPRAVKCVF+G
Sbjct: 632 AWHGKPVDYSNLRVFGSLAYAHVKEGKLEPRAVKCVFIG 670



 Score =  104 bits (260), Expect(2) = 1e-54
 Identities = 48/96 (50%), Positives = 67/96 (69%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + CVLGK  RVKF          SS   EY+HAD+WGP+ V T GG  YFL++IDDF+R+
Sbjct: 453  EHCVLGKSHRVKFGTGI----HVSSRPFEYVHADLWGPSRVKTLGGGSYFLTIIDDFTRR 508

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW+++LK+K++ +  F+ W TLI+NQ   K+K+LRT
Sbjct: 509  VWLYVLKDKTETYKKFRDWYTLIQNQLETKLKVLRT 544


>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 498

 Score =  138 bits (348), Expect(2) = 1e-54
 Identities = 68/99 (68%), Positives = 79/99 (79%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNG+AERMNRT+LERVR ML  SGLSKKFWGEA  TAAY+INR PS  L+ K P  
Sbjct: 169 HTPQQNGLAERMNRTILERVRCMLLGSGLSKKFWGEAATTAAYLINRCPSSALNNKTPME 228

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
            + GK +D+SNL+VFG  A+AH K  KLEPRAVKCVF+G
Sbjct: 229 AWHGKPVDYSNLRVFGSLAYAHVKEGKLEPRAVKCVFIG 267



 Score =  104 bits (260), Expect(2) = 1e-54
 Identities = 48/96 (50%), Positives = 67/96 (69%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + CVLGK  RVKF          SS   EY+HAD+WGP+ V T GG  YFL++IDDF+R+
Sbjct: 50   EHCVLGKSHRVKFGTGI----HVSSRPFEYVHADLWGPSRVKTLGGGSYFLTIIDDFTRR 105

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW+++LK+K++ +  F+ W TLI+NQ   K+K+LRT
Sbjct: 106  VWLYVLKDKTETYKKFRDWYTLIQNQLETKLKVLRT 141



 Score =  135 bits (340), Expect = 1e-31
 Identities = 66/142 (46%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
 Frame = -1

Query: 462 LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSVDWLNA 283
           +  YQLVRDRARR  +  +R+    +  +  +  + +   EPK+Y+EA++S  + DW+ A
Sbjct: 355 ISSYQLVRDRARRVPKPSSRYGYADLICYALNTANEVQGFEPKTYKEAMESSEAQDWMKA 414

Query: 282 MNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKEG 112
           ++EEM SL  N TW LV  P    V+ CKW+FK K+     E+ RFKARLVA+GFTQ EG
Sbjct: 415 VHEEMKSLQKNLTWKLVSLPTGKKVISCKWIFKRKDGIPGVEAPRFKARLVARGFTQVEG 474

Query: 111 IDYTEIFAPVVKFTTVRIMLAL 46
           +DY EIF+PVVK  ++RI+L++
Sbjct: 475 VDYNEIFSPVVKHCSIRILLSI 496


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  130 bits (326), Expect(2) = 1e-54
 Identities = 58/99 (58%), Positives = 79/99 (79%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           YTPQQNGVAERMNRT++ + R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K P  
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           +++G   D+S L+VFGC+A+AH   +KLEPRA+KC+FLG
Sbjct: 641 IWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLG 679



 Score =  112 bits (281), Expect(2) = 1e-54
 Identities = 51/96 (53%), Positives = 68/96 (70%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + CV GKH RVKF  S    K     IL+Y+HAD+WGP+   + GG+RY L++IDD+SRK
Sbjct: 462  ERCVFGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K D F  FK+WK +IE QT K++K+LRT
Sbjct: 518  VWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRT 553



 Score =  123 bits (308), Expect = 1e-26
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 5/157 (3%)
 Frame = -1

Query: 456  DYQLVRDRARRNIRQPARF-DDFHMTSFVFSVFDSIDNS-EPKSYEEALKSKNSVDWLNA 283
            D  +   R +R+   P R  ++  M  + FS  + ++N+ EP +Y EA+ S +   W++A
Sbjct: 765  DEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISA 824

Query: 282  MNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEG 112
            M EEM SL  N TW LV  P     V CKW+FK K   +  E  RFKARLVAKGF+Q  G
Sbjct: 825  MQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVG 884

Query: 111  IDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
            +DY ++F+PVVK +++R   ++ A  + EL+Q+DVKT
Sbjct: 885  VDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKT 921


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  125 bits (313), Expect(2) = 2e-54
 Identities = 58/99 (58%), Positives = 76/99 (76%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSPS  +  K P  
Sbjct: 549 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIK 608

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   ++S+L+VFGC A+AH    KLEPRA+KC+FLG
Sbjct: 609 VWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLG 647



 Score =  117 bits (293), Expect(2) = 2e-54
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 430  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRK 485

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K   FDVFK+WKT++E QT +K+KILRT
Sbjct: 486  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 521



 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 48/153 (31%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
 Frame = -1

Query: 453  YQLVRDRARRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVDWLNAM 280
            + + +D+ +RNI+ P R+ ++ ++ ++  SV + I+ N EP +Y +A+ S +   W+ AM
Sbjct: 737  HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 796

Query: 279  NEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESVRFKARLVAKGFTQKEGIDYT 100
            ++EM SL  N+TW LV  P     + CKW+FK K              +G +  +   Y 
Sbjct: 797  HDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK--------------EGMSPSDEARY- 841

Query: 99   EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
                   K +++R +L++ A +++EL+QMDVKT
Sbjct: 842  -------KASSIRTLLSIVAMYDYELEQMDVKT 867


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  124 bits (312), Expect(2) = 2e-54
 Identities = 57/99 (57%), Positives = 77/99 (77%)
 Frame = -2

Query: 995  YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
            +TPQQNGVAERMNRT++ + R +L+ +GL K+FW EAV TA Y+INRSPS  +  K P  
Sbjct: 795  HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 854

Query: 815  VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
            V++G   ++S+L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 855  VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLG 893



 Score =  117 bits (293), Expect(2) = 2e-54
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 676  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 731

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K   FDVFK+WKT++E QT +K+KILRT
Sbjct: 732  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 767



 Score =  134 bits (336), Expect = 4e-30
 Identities = 64/154 (41%), Positives = 106/154 (68%), Gaps = 5/154 (3%)
 Frame = -1

Query: 447  LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVDWLNAMNE 274
            + +DR +RNI+ P R+ ++ ++ ++  SV + I+ N+EP +Y EA+ S +   W+ AM++
Sbjct: 985  IAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 1044

Query: 273  EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDY 103
            EM SL  N+TW LV  P     + CKW+FK K   +  +  R+KARL+AKG++Q  GID+
Sbjct: 1045 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDF 1104

Query: 102  TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
             ++F+PVVK +++R +L++ A  ++EL+QMDVKT
Sbjct: 1105 NDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKT 1138


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  124 bits (312), Expect(2) = 2e-54
 Identities = 57/99 (57%), Positives = 77/99 (77%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRT++ + R +L+ +GL K+FW EAV TA Y+INRSPS  +  K P  
Sbjct: 588 HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 647

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   ++S+L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 648 VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLG 686



 Score =  117 bits (293), Expect(2) = 2e-54
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 469  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 524

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K   FDVFK+WKT++E QT +K+KILRT
Sbjct: 525  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 560


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  130 bits (327), Expect(2) = 7e-54
 Identities = 61/99 (61%), Positives = 78/99 (78%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K P  
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   D+S LKVFGC+A+AH    KLEPRAVKC+FLG
Sbjct: 640 VWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLG 678



 Score =  110 bits (274), Expect(2) = 7e-54
 Identities = 49/96 (51%), Positives = 66/96 (68%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RV+F  S    K      L+Y+HAD+WGP+   + GG+RY L+VIDD+SRK
Sbjct: 461  EHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTVIDDYSRK 516

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K D F  FK WK +IE QT +K+K+LRT
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552



 Score =  124 bits (311), Expect = 6e-27
 Identities = 58/154 (37%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
 Frame = -1

Query: 447  LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVDWLNAMNE 274
            + + +++R  + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S +W++AM+E
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 273  EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDY 103
            EM SL  N+TW +VP P     + CKW+FK K   +  E  ++KARLVA+G++Q  G+DY
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDY 898

Query: 102  TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
             ++F+PVVK +++R  L++ A  + EL+Q+DVKT
Sbjct: 899  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKT 932


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  130 bits (327), Expect(2) = 9e-54
 Identities = 61/99 (61%), Positives = 78/99 (78%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K P  
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   D+S LKVFGC+A+AH    KLEPRAVKC+FLG
Sbjct: 640 VWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLG 678



 Score =  109 bits (273), Expect(2) = 9e-54
 Identities = 48/96 (50%), Positives = 66/96 (68%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RV+F  S    K      L+Y+HAD+WGP+   + GG+RY L++IDD+SRK
Sbjct: 461  EHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRK 516

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K D F  FK WK +IE QT +K+K+LRT
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552



 Score =  124 bits (311), Expect = 6e-27
 Identities = 58/154 (37%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
 Frame = -1

Query: 447  LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVDWLNAMNE 274
            + + +++R  + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S +W++AM+E
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 273  EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDY 103
            EM SL  N+TW +VP P     + CKW+FK K   +  E  ++KARLVA+G++Q  G+DY
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDY 898

Query: 102  TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
             ++F+PVVK +++R  L++ A  + EL+Q+DVKT
Sbjct: 899  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKT 932


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  130 bits (327), Expect(2) = 9e-54
 Identities = 61/99 (61%), Positives = 78/99 (78%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K P  
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   D+S LKVFGC+A+AH    KLEPRAVKC+FLG
Sbjct: 640 VWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLG 678



 Score =  109 bits (273), Expect(2) = 9e-54
 Identities = 48/96 (50%), Positives = 66/96 (68%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RV+F  S    K      L+Y+HAD+WGP+   + GG+RY L++IDD+SRK
Sbjct: 461  EHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRK 516

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K D F  FK WK +IE QT +K+K+LRT
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRT 552



 Score =  124 bits (311), Expect = 6e-27
 Identities = 58/154 (37%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
 Frame = -1

Query: 447  LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSIDN-SEPKSYEEALKSKNSVDWLNAMNE 274
            + + +++R  + P R  ++ +++ +  S  + ++N  EP +Y+EA++  +S +W++AM+E
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 273  EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDY 103
            EM SL  N+TW +VP P     + CKW+FK K   +  E  ++KARLVA+G++Q  G+DY
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDY 898

Query: 102  TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
             ++F+PVVK +++R  L++ A  + EL+Q+DVKT
Sbjct: 899  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKT 932


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  122 bits (307), Expect(2) = 9e-54
 Identities = 57/99 (57%), Positives = 75/99 (75%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           YTPQQNGVAERMNRT++ + R ML+ +GL K+FW  AV T  Y+INRSPS  +  K P  
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   ++S+L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 476 VWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLG 514



 Score =  117 bits (293), Expect(2) = 9e-54
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 301  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRK 356

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K   FDVFK+WKT++E QT +K+KILRT
Sbjct: 357  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 392



 Score = 71.6 bits (174), Expect = 9e-10
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
 Frame = -1

Query: 447 LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVDWLNAMNE 274
           + +D+ +RN + P R+ ++ ++ ++  SV + I+ N+EP +Y EA+ S +   W+  M++
Sbjct: 571 IAKDKPKRNTKPPQRYIEEANIVAYALSVTEEIEGNAEPSTYSEAIVSDDCNRWITTMHD 630

Query: 273 EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK 178
           EM SL  N+TW LV  P     + CKW+FK K
Sbjct: 631 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 662


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  122 bits (307), Expect(2) = 9e-54
 Identities = 57/99 (57%), Positives = 75/99 (75%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           YTPQQNGVAERMNRT++ + R ML+ +GL K+FW  AV T  Y+INRSPS  +  K P  
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   ++S+L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 476 VWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLG 514



 Score =  117 bits (293), Expect(2) = 9e-54
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 301  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRK 356

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K   FDVFK+WKT++E QT +K+KILRT
Sbjct: 357  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 392



 Score = 70.5 bits (171), Expect = 2e-09
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
 Frame = -1

Query: 447 LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVDWLNAMNE 274
           + +D+ +RN + P R+ ++ ++ ++  SV + I+ N+EP  Y EA+ S +   W+  M++
Sbjct: 571 IAKDKPKRNTKPPQRYIEEANIVAYALSVTEEIEGNAEPSIYSEAIVSDDCNRWITTMHD 630

Query: 273 EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK 178
           EM SL  N+TW LV  P     + CKW+FK K
Sbjct: 631 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 662


>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1269

 Score =  132 bits (332), Expect(2) = 1e-53
 Identities = 74/139 (53%), Positives = 95/139 (68%), Gaps = 4/139 (2%)
 Frame = -2

Query: 992 TPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEFV 813
           TPQQNGVAERMNRTL ER RSM   SGL K+FW EAV TAAY+INR PSVPL  KIPE V
Sbjct: 545 TPQQNGVAERMNRTLTERARSMRMQSGLPKQFWAEAVNTAAYLINRGPSVPLEHKIPEEV 604

Query: 812 FTGKEIDFSNLKVFGCSAFAH---QKLDKLEPRAVKCVFLGXXXMPLSDSENDTPNKVEH 642
           ++GKE+  S+L+VFGC A+ H   Q  +KL+P++ KC F+G           D  NK + 
Sbjct: 605 WSGKEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENK-KM 663

Query: 641 VPSVD-IFPDAVVHENHEN 588
           + S D IF + V++++ +N
Sbjct: 664 IRSRDVIFNEGVMYKDKQN 682



 Score =  107 bits (267), Expect(2) = 1e-53
 Identities = 48/96 (50%), Positives = 67/96 (69%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GK  RV F       ++   E LE +H+DVWGP +V++  G +YF++ IDD SRK
Sbjct: 424  EDCIFGKQKRVSFQKG---GRTPKKERLELVHSDVWGPTTVSSISGKQYFVTFIDDHSRK 480

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VWV+ LK+KS+VF+ FK WK ++EN+TG KIK LRT
Sbjct: 481  VWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRT 516



 Score =  114 bits (286), Expect = 9e-24
 Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
 Frame = -1

Query: 351  DNSEPKSYEEALKSKNSVDWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE 172
            D  EP+ Y EA +++++  W  AM EEM SL  N TW L   P     +  KW+++VK E
Sbjct: 751  DGGEPEDYSEACQTRDASKWELAMKEEMKSLISNQTWELAKLPMGKKALHNKWVYRVKEE 810

Query: 171  CE-SVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
             + S R+KARLV KGF QKEG+DYTEIF+PVVK  T+R +L++ A     L+Q+DVKT
Sbjct: 811  HDGSKRYKARLVVKGFQQKEGVDYTEIFSPVVKLNTIRTVLSIVASEELYLEQLDVKT 868


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  122 bits (305), Expect(2) = 2e-53
 Identities = 56/99 (56%), Positives = 75/99 (75%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           +TPQQNGVAERMNRT++ + R ML+ + L K+FW EAV TA Y+INRSPS  +  K P  
Sbjct: 497 HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 556

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   ++S+L+VFGC+A+AH    KLEPR +KC+FLG
Sbjct: 557 VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLG 595



 Score =  117 bits (293), Expect(2) = 2e-53
 Identities = 50/96 (52%), Positives = 71/96 (73%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 378  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRK 433

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K   FDVFK+WKT++E QT +K+KILRT
Sbjct: 434  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469



 Score =  127 bits (318), Expect = 7e-28
 Identities = 61/154 (39%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
 Frame = -1

Query: 447  LVRDRARRNIRQPARF-DDFHMTSFVFSVFDSID-NSEPKSYEEALKSKNSVDWLNAMNE 274
            + +DR +RN + P R+ ++ ++ ++  SV + I+ N+EP +Y +A+ S +   W+ AM++
Sbjct: 687  IAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHD 746

Query: 273  EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDY 103
            EM SL  N++W L   P     + CKW+FK K   +  +  R+KARLVAKG++Q  GID+
Sbjct: 747  EMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 806

Query: 102  TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
             ++F+PVVK +++R +L++ A  ++EL+QMDVKT
Sbjct: 807  NDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKT 840


>gb|KYP40338.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 864

 Score =  131 bits (329), Expect(2) = 3e-53
 Identities = 73/139 (52%), Positives = 94/139 (67%), Gaps = 4/139 (2%)
 Frame = -2

Query: 992 TPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEFV 813
           TPQQNGVAERMNRTL ER RSM   SGL K+FW E V TAAY+INR PSVPL  KIPE V
Sbjct: 545 TPQQNGVAERMNRTLTERARSMRVQSGLPKQFWAETVNTAAYLINRGPSVPLEHKIPEEV 604

Query: 812 FTGKEIDFSNLKVFGCSAFAH---QKLDKLEPRAVKCVFLGXXXMPLSDSENDTPNKVEH 642
           ++GKE+  S+L+VFGC A+ H   Q  +KL+P++ KC F+G           D  NK + 
Sbjct: 605 WSGKEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENK-KM 663

Query: 641 VPSVD-IFPDAVVHENHEN 588
           + S D IF + V++++ +N
Sbjct: 664 IRSRDVIFNEGVMYKDKQN 682



 Score =  107 bits (267), Expect(2) = 3e-53
 Identities = 48/96 (50%), Positives = 67/96 (69%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + C+ GK  RV F       ++   E LE +H+DVWGP +V++  G +YF++ IDD SRK
Sbjct: 424  EDCIFGKQKRVSFQKG---GRTPKKERLELVHSDVWGPTTVSSISGKQYFVTFIDDHSRK 480

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VWV+ LK+KS+VF+ FK WK ++EN+TG KIK LRT
Sbjct: 481  VWVYFLKHKSEVFEAFKMWKAMVENETGLKIKKLRT 516



 Score =  104 bits (260), Expect = 2e-20
 Identities = 52/107 (48%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
 Frame = -1

Query: 351  DNSEPKSYEEALKSKNSVDWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE 172
            D  EP+ Y EA +++++  W  AM EEM SL  N TW L   P     +  KW+++VK E
Sbjct: 751  DGGEPEDYSEACQTRDASKWELAMKEEMKSLISNQTWELAKLPMGKKALHNKWVYRVKEE 810

Query: 171  CE-SVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQF 34
             + S R+KARLV KGF QKEG+DYTEIF+PVVK  T+ +   LC  F
Sbjct: 811  HDGSKRYKARLVVKGFQQKEGVDYTEIFSPVVKLNTIVLAQLLCVNF 857


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  124 bits (310), Expect(2) = 3e-53
 Identities = 58/98 (59%), Positives = 75/98 (76%)
 Frame = -2

Query: 992 TPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEFV 813
           TPQ+NG+ ER NRT+LERVR ML  +GL K FW EAV +A Y INR PS  L  K P+ V
Sbjct: 117 TPQKNGLVERFNRTILERVRCMLNHAGLPKSFWAEAVSSAVYCINRCPSTALEFKTPQEV 176

Query: 812 FTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           ++G+++D+S L+VFGC A+AH K DKLEPRA+K +F+G
Sbjct: 177 WSGRKVDYSELRVFGCIAYAHIKQDKLEPRALKFIFIG 214



 Score =  114 bits (286), Expect(2) = 3e-53
 Identities = 50/92 (54%), Positives = 70/92 (76%)
 Frame = -3

Query: 1273 LGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVF 1094
            +GK SR+KF  S      +S  +L+Y+H+D+WGP+   +HGG+RYFLS++DDFSRKVWV+
Sbjct: 1    MGKASRLKFSTST----HSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVY 56

Query: 1093 LLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
             LK K++VFD FK+WK L+E Q G+ +K LRT
Sbjct: 57   FLKQKNEVFDRFKEWKVLVETQIGRNLKKLRT 88



 Score =  159 bits (401), Expect = 6e-40
 Identities = 81/158 (51%), Positives = 104/158 (65%), Gaps = 4/158 (2%)
 Frame = -1

Query: 462 LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSV-FDSIDNSEPKSYEEALKSKNSVDWLN 286
           +  Y L RDR RR  + P R+    + SF F+V  D  D+ EPKSY EA++SK+   WL 
Sbjct: 301 IQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLK 360

Query: 285 AMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKE 115
           AM EEM SL  N TWILV KP    +V  KW+FK K      E  RFK RLVA+GFTQ+E
Sbjct: 361 AMKEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQRE 420

Query: 114 GIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKT 1
           G+DY EIF+PVVK  ++R++LA+   F+ EL+QMDV+T
Sbjct: 421 GLDYKEIFSPVVKHNSIRMILAMVTHFDMELEQMDVRT 458


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  129 bits (324), Expect(2) = 3e-53
 Identities = 59/99 (59%), Positives = 78/99 (78%)
 Frame = -2

Query: 995 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 816
           YTPQQNGVAERMNRT++ + R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K P  
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640

Query: 815 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 699
           V++G   D+S L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 641 VWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLG 679



 Score =  108 bits (271), Expect(2) = 3e-53
 Identities = 50/96 (52%), Positives = 65/96 (67%)
 Frame = -3

Query: 1285 DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 1106
            + CV GKH RVKF  S    K     IL+Y+H D+WGP+     GG+RY L++IDD+SRK
Sbjct: 462  EHCVFGKHKRVKFNTSVHRTKG----ILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRK 517

Query: 1105 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRT 998
            VW + LK+K D F  FK+WK  IE QT K++K+LRT
Sbjct: 518  VWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRT 553



 Score = 76.3 bits (186), Expect = 3e-11
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
 Frame = -1

Query: 456  DYQLVRDRARRNIRQPARF-DDFHMTSFVFSVFDSIDNS-EPKSYEEALKSKNSVDWLNA 283
            D  +   R +R+   P R  ++  M  + FS  + ++N+ EP +Y EA+ S +   W++A
Sbjct: 733  DEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISA 792

Query: 282  MNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEG 112
            M EEM SL  N TW LV  P     V CKW+FK K   +  E  RFKA +VA    + E 
Sbjct: 793  MQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSSSEPPRFKASIVAMHDLELEQ 852

Query: 111  IDYTEIF 91
            +D    F
Sbjct: 853  LDVKTAF 859