BLASTX nr result
ID: Rehmannia28_contig00000436
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000436
(8801 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus] 3331 0.0
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus] 3329 0.0
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus] 3326 0.0
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus] 3323 0.0
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus... 3207 0.0
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus] 3204 0.0
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc... 3201 0.0
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc... 3190 0.0
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc... 1137 0.0
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc... 1133 0.0
gb|AKN08994.1| replicase [Caucasus prunus virus] 992 0.0
ref|YP_008997790.1| replication-associated polyprotein [Apricot ... 964 0.0
gb|AKN09002.1| replicase [Apricot vein clearing associated virus] 971 0.0
gb|AKN08998.1| replicase [Apricot vein clearing associated virus] 966 0.0
gb|AFA43525.1| replicase polyprotein, partial [Citrus leaf blotc... 611 0.0
ref|YP_009103999.1| ORF1 [Carrot betaflexivirus 1] gi|558698257|... 652 0.0
ref|NP_062428.1| replicase [Cherry mottle leaf virus] gi|9294781... 649 0.0
gb|ACF94734.1| putative replicase polyprotein, partial [Citrus l... 581 0.0
gb|ACF94732.1| putative replicase polyprotein, partial [Citrus l... 580 0.0
gb|ACF94736.1| putative replicase polyprotein, partial [Citrus l... 577 0.0
>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3331 bits (8638), Expect = 0.0
Identities = 1598/1991 (80%), Positives = 1773/1991 (89%), Gaps = 6/1991 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 8368 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 8195
+ + DHTSFINRL+ASKDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFINRLVASKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 8194 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 8015
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 8014 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 7835
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 7834 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 7655
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 7654 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 7475
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 7474 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 7295
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 7294 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 7115
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 7114 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXES 6935
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C E
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 6934 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 6755
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESESEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 6754 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 6584
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 6583 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 6404
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 6403 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 6224
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 6223 GYDERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 6044
GY E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 6043 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 5864
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 5863 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 5684
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 5683 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 5504
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 5503 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 5324
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 5323 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 5144
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 5143 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 4964
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 4963 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4784
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4783 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4604
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4603 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFC 4424
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4423 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4244
STFLGG+DEFK+++GESLVTSIL+ + ITF+R NMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4243 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4064
EGDPFLKPFIFLG RI+K EP CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4063 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 3884
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 3883 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 3704
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 3703 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 3524
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 3523 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 3344
QLPEEIYIHSNKNFDDLN+WVK FFQ+DICVESDYEAFDA QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSFEIHLMKDAHFP 1796
Query: 3343 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 3164
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 3163 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 2984
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 2983 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 2804
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 2803 LYIEQSSDEDI 2771
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3329 bits (8631), Expect = 0.0
Identities = 1596/1991 (80%), Positives = 1772/1991 (89%), Gaps = 6/1991 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 8368 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 8195
+ + DHTSF+NRL+A KDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 8194 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 8015
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 8014 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 7835
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 7834 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 7655
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 7654 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 7475
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 7474 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 7295
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 7294 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 7115
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 7114 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXES 6935
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C E
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 6934 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 6755
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESESEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 6754 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 6584
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 6583 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 6404
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 6403 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 6224
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 6223 GYDERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 6044
GY E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 6043 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 5864
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 5863 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 5684
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 5683 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 5504
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 5503 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 5324
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 5323 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 5144
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 5143 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 4964
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 4963 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4784
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4783 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4604
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4603 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFC 4424
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4423 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4244
STFLGG+DEFK+++GESLVTSIL+ + ITF+RLNMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4243 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4064
EGDPFLKPFIFLGQRI+K EP CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4063 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 3884
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 3883 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 3704
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 3703 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 3524
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 3523 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 3344
QLPEEIYIHSNKNFDDL +WVK FFQ+DICVESDYEAFD QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFP 1796
Query: 3343 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 3164
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 3163 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 2984
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 2983 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 2804
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 2803 LYIEQSSDEDI 2771
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3326 bits (8624), Expect = 0.0
Identities = 1595/1991 (80%), Positives = 1771/1991 (88%), Gaps = 6/1991 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 8368 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 8195
+ + DHTSF+NRL+A KDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 8194 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 8015
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 8014 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 7835
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 7834 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 7655
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 7654 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 7475
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 7474 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 7295
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 7294 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 7115
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 7114 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXES 6935
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C E
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 6934 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 6755
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESELEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 6754 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 6584
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 6583 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 6404
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 6403 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 6224
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 6223 GYDERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 6044
GY E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 6043 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 5864
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 5863 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 5684
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 5683 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 5504
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 5503 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 5324
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 5323 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 5144
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 5143 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 4964
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 4963 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4784
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4783 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4604
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4603 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFC 4424
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4423 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4244
STFLGG+DEFK+++GESLVTSIL+ + ITF+R NMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4243 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4064
EGDPFLKPFIFLG RI+K EP CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4063 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 3884
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 3883 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 3704
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 3703 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 3524
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 3523 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 3344
QLPEEIYIHSNKNFDDLN+WVK FFQ+DICVESDYEAFD QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFP 1796
Query: 3343 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 3164
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 3163 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 2984
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 2983 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 2804
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 2803 LYIEQSSDEDI 2771
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 3323 bits (8616), Expect = 0.0
Identities = 1594/1991 (80%), Positives = 1770/1991 (88%), Gaps = 6/1991 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDA+YNAAAQTIISHSEFRNKHFAY+L SYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENHILFD+LP VV+TSKLIMCSIKESKVL+FKNIRD+K+
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 8368 -VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGS-ELFSNNFIKSISG 8195
+ + DHTSF+NRL+A KDI RYTEEADAFFSS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 8194 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG 8015
KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFT+VYPPELL+KFANSQNPK+YDFKVDKG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 8014 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 7835
RLFFFPDGVKTEAYEQKLNMEWLFSASH KSGD TWTVTRHKSIY+HHLFEVS GEL++D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 7834 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 7655
SK+FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 7654 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 7475
GDDVEIKEFLFFEQFCKRLIERQTSWGLFG+SFF+KLTD+ALS MPNVVARMFPQWKKKN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 7474 TFEFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDD 7295
TFEFLFSLGTLVVEIERRVCFEH+LEEWGFEVV+TDENAYLDPLS+FA+NENFNEERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 7294 GCLERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEF 7115
G L+RV+LPFWN DYD KR RANKYD+LC++ EER++ + GPHKMLQIEWYGI+EF
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 7114 DDPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXES 6935
DDPFI N IS+FT+ EAL+GK++ + +YS SKQADVL KCLSF+C E
Sbjct: 541 DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600
Query: 6934 RLQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHS 6755
RLQ AG D IE E + L ++ + E D A L + + + FIPT SD +G H
Sbjct: 601 RLQSAGRDPIESELEGLGKKTAESSGEADAANT-LLETQISGLVAFIPTFSD-EGESQHR 658
Query: 6754 FDNDTCEQANVANNC---EGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPM 6584
D + + + EG ++ G E + FEID+ DIFRP++C NTHG EIPTPM
Sbjct: 659 ADLEVESEGEIGKEESFEEGTLSCAEGHEAIK--FEIDFSDIFRPHNCMNTHGYEIPTPM 716
Query: 6583 DGNCFFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFC 6404
DGNCFFSAF F+CPDS+DLR++FA+WL FDGG++ ++G+KIRP+GV+MEAELIYLFC
Sbjct: 717 DGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 6403 VFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPC 6224
++REVTL++HDR+ + E VF IH GFEEGH+VQ+G+HFLGIETY ++ +P+LS+LPC
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 6223 GYDERLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICD 6044
GY E L F F+PEHFNC+QFRGRKGAFLTKVDADYGHNGMVYPHN+WVPSLDEII+ICD
Sbjct: 837 GYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIRICD 896
Query: 6043 QGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTA 5864
GD+FNCALINFY +SSLGFH+DNE+VYNDDPILTVCTEGEG SIE KE+T+SF+MTA
Sbjct: 897 HGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTA 956
Query: 5863 GSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNA 5684
GSFFLMP+G+Q++ARHSVRN PRVS+TFRKH+RRLDGSPIAIR+DNYRN+CLI ALS A
Sbjct: 957 GSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRNVCLIRALSKA 1016
Query: 5683 LNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEG 5504
LNR Q IIAKL++VN PFWSRFLSDGNGGS+EDC AACEALGI VDL+VDGKC+V+GEG
Sbjct: 1017 LNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEG 1076
Query: 5503 GLRISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFA 5324
+R+SLAL++NHFS VE HRS+QRTFVSHLAKK NL V++GLD MLQ ++ GVN +QF
Sbjct: 1077 AVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFI 1136
Query: 5323 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKS 5144
AD+E+AR LANSFLNMTTGICL R LD GEKYF HM EERPKQIGFDVTAICGFAGSGKS
Sbjct: 1137 ADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSEERPKQIGFDVTAICGFAGSGKS 1196
Query: 5143 RQLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLII 4964
RQLQSWLH+RK+GNFCVVSPR NLAADWSFKLELEPNEKRKVATFESFIKMDK KLD+I+
Sbjct: 1197 RQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIV 1256
Query: 4963 LDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4784
LDELTLFPNGYLDLL+YEL +FN+HC +ILLFDPLQARYHN+MDE +L FEHD DRLIGG
Sbjct: 1257 LDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGG 1316
Query: 4783 QDIQYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLL 4604
QD++YIYSSHRMS++FNRFFDVPCFNQAETT EQ+LWI DD+YSI S+CID+ EPCDVLL
Sbjct: 1317 QDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLL 1376
Query: 4603 VESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFC 4424
VESDLEKKAFSP+INVMTFGESQGLTFNHVCI RWMVALTRAKTR+SFC
Sbjct: 1377 VESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFC 1436
Query: 4423 STFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERL 4244
STFLGG+DEFK+++GESLVTSIL+ + ITF+R NMMVKCNL++ EKKNGCSDEVDREERL
Sbjct: 1437 STFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCSDEVDREERL 1496
Query: 4243 EGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQRE 4064
EGDPFLKPFIFLG RI+K EP CQTHLYITEPNFGLCYNFDFIREKEQRE
Sbjct: 1497 EGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQRE 1556
Query: 4063 YRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREE 3884
YRE+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAV+KRLVFREE
Sbjct: 1557 YREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREE 1616
Query: 3883 EENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSI 3704
EENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ L EESVNAFEKKKLEKSCGTIKSHSI
Sbjct: 1617 EENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSI 1676
Query: 3703 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 3524
RSD+DWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRN
Sbjct: 1677 RSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRN 1736
Query: 3523 QLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFP 3344
QLPEEIYIHSNKNFDDL +WVK FFQ+DICVESDYEAFD QDEYILSFE+HLMKDAHFP
Sbjct: 1737 QLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFP 1796
Query: 3343 QKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAG 3164
Q+VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYEWRRGQPIAFAG
Sbjct: 1797 QRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAG 1856
Query: 3163 DDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVA 2984
DDMCALNNLP+ HDFDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ+A
Sbjct: 1857 DDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIA 1916
Query: 2983 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRD 2804
IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT+V+D
Sbjct: 1917 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKD 1976
Query: 2803 LYIEQSSDEDI 2771
L++EQSSDEDI
Sbjct: 1977 LFLEQSSDEDI 1987
>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
replication polyprotein; AltName: Full=ORF1 protein;
Includes: RecName: Full=Viral methyltransferase;
Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate
dioxygenase; Includes: RecName: Full=Protease; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|14270249|emb|CAC39422.1|
hypothetical protein [Citrus leaf blotch virus]
Length = 1962
Score = 3207 bits (8315), Expect = 0.0
Identities = 1557/1988 (78%), Positives = 1732/1988 (87%), Gaps = 3/1988 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 8368 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 8189
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 8188 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 8009
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 8008 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 7829
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 7828 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 7649
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 7648 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 7469
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 7468 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 7289
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE+RVDDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 7288 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 7112
LER+RLPFWN +DYDLKR+R N Y+IL ++ EER+ S GP+KMLQIEWYGIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 7111 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXESR 6932
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C E R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 6931 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 6752
L+ AGHD +DE E+EL+ A+ A I L+D G M
Sbjct: 601 LKAAGHDVSDDE------------------EEELTSAEQ---AGPIKILADPLGFM---- 635
Query: 6751 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 6572
+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 636 -KECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 6571 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 6392
FFSAF FE + LR+DF++WL F+GG++ L IRP+GV+MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRG 754
Query: 6391 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYDE 6212
VTL++HDR+ E E V+ +H GFEEGH+V +G HF+GIETY ++T +P L D+PCG+ E
Sbjct: 755 VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814
Query: 6211 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 6032
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSL+EII+IC QGD+
Sbjct: 815 EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDD 874
Query: 6031 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 5852
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K++ +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMTAGSFF 934
Query: 5851 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 5672
LMPKG+QK+ARHSV N RVS+TFRKHVRRL+GSPIAIR++NY+N CLI+A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYKNTCLINAFSKAMKRS 994
Query: 5671 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 5492
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V+GKC+V+G+G LRI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGALRI 1054
Query: 5491 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 5315
S+AL+NNHFS + + M+RTFVSHL +KGN+NVLEG DAML D+ AGVN IQFAA++
Sbjct: 1055 SMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGVNKIQFAANF 1114
Query: 5314 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 5135
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGIDVTMVCGFAGSGKSRKL 1174
Query: 5134 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 4955
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 4954 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4775
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQARYHN+MDE IL FEHD DRLIGGQ+I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIGGQNI 1294
Query: 4774 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4595
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4594 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTF 4415
DLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRA+TR S CSTF
Sbjct: 1355 DLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRFSLCSTF 1414
Query: 4414 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4235
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4234 PFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4055
PFLKPFIFLGQR++K EP CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4054 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 3875
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 1594
Query: 3874 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 3695
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 3694 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 3515
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 3514 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 3335
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDAHFPQK+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKI 1774
Query: 3334 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 3155
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 3154 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 2975
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 1894
Query: 2974 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 2795
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 2794 EQSSDEDI 2771
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
Length = 1962
Score = 3204 bits (8307), Expect = 0.0
Identities = 1556/1988 (78%), Positives = 1731/1988 (87%), Gaps = 3/1988 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 8368 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 8189
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 8188 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 8009
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 8008 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 7829
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 7828 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 7649
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 7648 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 7469
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 7468 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 7289
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE+RVDDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 7288 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 7112
LER+RLPFWN +DYDLKR+R N Y+IL ++ EER+ S GP+KMLQIEWYGIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 7111 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXESR 6932
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C E R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 6931 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 6752
L+ AGHD +DE E+EL+ A+ A I L+D G M
Sbjct: 601 LKAAGHDISDDE------------------EEELTSAEQ---AGPIKILADPLGFM---- 635
Query: 6751 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 6572
+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 636 -KECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 6571 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 6392
FFSAF FE + LR+DF++WL F+GG++ L IRP+GV+MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRG 754
Query: 6391 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYDE 6212
VTL++HDR+ E E V+ +H GFEEGH+V +G HF+GIETY ++T +P L D+PCG+ E
Sbjct: 755 VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814
Query: 6211 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 6032
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSL+EII+IC QGD+
Sbjct: 815 EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDD 874
Query: 6031 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 5852
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K++ +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFF 934
Query: 5851 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 5672
LMPKG+QK+ARHSV N PRVS+TFRKHVRRL+GSPIAIR++NY+N CLI+A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREENYKNTCLINAFSKAMKRS 994
Query: 5671 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 5492
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V+GK +V+G+G LRI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYVVLGKGALRI 1054
Query: 5491 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 5315
S+AL+NNHFS + + M+RTFVSHL +KGN+NVLEG D ML D+ AGVN IQFAA++
Sbjct: 1055 SMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAANF 1114
Query: 5314 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 5135
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGTDVTMVCGFAGSGKSRKL 1174
Query: 5134 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 4955
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 4954 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4775
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQARYHN+MDE IL FEHD DRLIGGQ+I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIGGQNI 1294
Query: 4774 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4595
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4594 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTF 4415
DLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRA+TR S CSTF
Sbjct: 1355 DLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRFSLCSTF 1414
Query: 4414 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4235
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4234 PFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4055
PFLKPFIFLGQRI+K EP CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4054 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 3875
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRL+FREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLIFREEEEN 1594
Query: 3874 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 3695
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 3694 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 3515
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 3514 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 3335
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDAHFPQK+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKI 1774
Query: 3334 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 3155
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 3154 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 2975
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 1894
Query: 2974 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 2795
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 2794 EQSSDEDI 2771
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 3201 bits (8300), Expect = 0.0
Identities = 1552/1988 (78%), Positives = 1728/1988 (86%), Gaps = 3/1988 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 8368 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 8189
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S G ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGGPELFSRNFIKSLENKE 180
Query: 8188 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 8009
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 8008 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 7829
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 7828 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 7649
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 7648 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 7469
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 7468 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 7289
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE+RVDDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 7288 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 7112
LER+RLPFWN +DYDLKR+R N YDIL ++ EER+ S GP+KMLQIEWYGIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 7111 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXESR 6932
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C E R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 6931 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 6752
L+ AGHD+ +DE E+EL+ + I L+D SF
Sbjct: 601 LKAAGHDTSDDE------------------EEELTSVEQTGP---IKILADP-----LSF 634
Query: 6751 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 6572
N+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 635 MNECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 6571 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 6392
FFSAF FE + LR+DF++WL F+GG++ L IRPDG++MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFCVFRG 754
Query: 6391 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYDE 6212
VTL++HDR+ + E V+ +H GFEEGH+V +G HF+GIETY V+T +P L D+PCG+ E
Sbjct: 755 VTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPCGFSE 814
Query: 6211 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 6032
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSLDEII+IC QGD+
Sbjct: 815 EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDD 874
Query: 6031 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 5852
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K++ +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFF 934
Query: 5851 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 5672
LMPKG+QK+ARHSV N PRVS+TFRKHVRRL+GSPIAIR++NY+N CLI A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENYKNTCLIDAFSKAMKRS 994
Query: 5671 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 5492
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V GK +V+G+G RI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVVLGKGAFRI 1054
Query: 5491 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 5315
S+AL++NHFS + + M+RTFVSHL +KGN+NVLEG D ML D+ AGVN IQFAA++
Sbjct: 1055 SMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAANF 1114
Query: 5314 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 5135
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGIDVTMVCGFAGSGKSRKL 1174
Query: 5134 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 4955
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 4954 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4775
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQAR+HN+MDE IL FEHD DRL+GGQ I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHDVDRLVGGQSI 1294
Query: 4774 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4595
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4594 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTF 4415
DLEKKAFSPI+NVMTFGESQGLTFNHVCI RWMVALTR++TR S CSTF
Sbjct: 1355 DLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTF 1414
Query: 4414 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4235
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4234 PFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4055
PFLKPFIFLGQRI+K EP CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4054 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 3875
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 1594
Query: 3874 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 3695
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 3694 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 3515
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 3514 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 3335
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDAHFP+K+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPRKI 1774
Query: 3334 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 3155
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 3154 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 2975
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 1894
Query: 2974 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 2795
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 2794 EQSSDEDI 2771
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 3190 bits (8272), Expect = 0.0
Identities = 1551/1988 (78%), Positives = 1722/1988 (86%), Gaps = 3/1988 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MALMSNKTAIESILGNF+KKHVDAIYNAAAQTI+SHSEFRNKHFAYSLNSYQKKIASKVG
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRR- 8369
IELYPNGY+PHSHPLSKIFENH+LFD+LP VVNTS+L+MCSIKESKVLVFK IRDK RR
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 8368 VFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKE 8189
V +L +SL HTSFINRL+ASKD+SRYTEEADAFF S ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLDNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 8188 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRL 8009
AVFFHDEVHHWTKAQMFSFLK TKV+RFIFTVVYPPE+L+KFANSQNPK+YDFKVDKGRL
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 8008 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 7829
FFFPDGVKTEAYEQKLNMEWLFSASHL+SGD WTVTRHKSIYAHHLFE+S GELVTDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 7828 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 7649
LFFSDY SIDMSKIFLDRFRSYEVFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 7648 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 7469
DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFF KLTDMALS +PN +AR+FPQWKKKNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 7468 EFLFSLGTLVVEIERRVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEERVDDGC 7289
EFLFSLGTLVV++ER+VCFEHVLEEWGFEVV+TDENAYLDPLSIFAINENFNE R DDG
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGY 480
Query: 7288 LERVRLPFWNSSDYDLKRRRANKYDILCHQLNEERESGSKGMGPHKMLQIEWYGIKEFD- 7112
LER+RLPFWN +DYDLKRRR N Y+IL ++ EER S GP+KMLQIEW+GIKEF
Sbjct: 481 LERIRLPFWNLNDYDLKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKV 540
Query: 7111 DPFICNAISKFTLFEALVGKKVDRRKYSCSKQADVLHKCLSFICXXXXXXXXXXXXXESR 6932
DPFI N+I++FTL EAL+GK++D +KYS SKQA L L+F+C E R
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 6931 LQLAGHDSIEDEGDRLREEIEDFDDEVDRAEKELSKAKNQRMALFIPTLSDADGSMVHSF 6752
L+ AGHD +DE E+EL+ A+ A I L+D G M
Sbjct: 601 LKAAGHDISDDE------------------EEELTSAEQ---AGPIKILADPLGFM---- 635
Query: 6751 DNDTCEQANVANNCEGIIADEFGVEVERRGFEIDYKDIFRPYDCPNTHGKEIPTPMDGNC 6572
+ E+ + +F + FEI+Y DIF P++C NTHG EIPTP DGNC
Sbjct: 636 -KECLEEIPIETEPSLEERGQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGNC 694
Query: 6571 FFSAFLTAFECPDSEDLRTDFANWLAIFDGGNFRELGLKIRPDGVYMEAELIYLFCVFRE 6392
FFSAF FE + LR+DF++WL F+GG++ L IRPDGV+MEAELIYLFCVFR
Sbjct: 695 FFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVFRG 754
Query: 6391 VTLVLHDRSCETEKVFVIHAGFEEGHIVQKGEHFLGIETYIVNTSLPEPDLSDLPCGYDE 6212
VTL++HDR+ E E V+ +H GFEEGH+V +G HF+GIETY ++T +P L D+PCG+ E
Sbjct: 755 VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814
Query: 6211 RLTKFLFRPEHFNCSQFRGRKGAFLTKVDADYGHNGMVYPHNSWVPSLDEIIKICDQGDE 6032
+TKF FRP+HFNC+QFRGRK AF+TKVDADYGHNGMVYPHNSWVPSLDEII+IC QGD+
Sbjct: 815 EITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDD 874
Query: 6031 FNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFF 5852
FNCALINFY+++SSLGFH+DNE+VYNDDPILTVCT GEG +IE K + +SF+MTAGSFF
Sbjct: 875 FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTAGSFF 934
Query: 5851 LMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRD 5672
LMPKG+QK+ARHSV N RVS+TFRKHVRRL+GSPIAIR++NY+N LI A S A+ R
Sbjct: 935 LMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYKNTRLIDAFSKAMKRS 994
Query: 5671 KQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRI 5492
KQ IIAKL++VN PFWSR+LS+GNGGSIEDCQ+ACEAL + VDL V+GKC+V+G+G RI
Sbjct: 995 KQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGAFRI 1054
Query: 5491 SLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI-CAGVNYIQFAADY 5315
S+AL+NNHFS + + M+RTFVSHL +KG++NVLEG D +L D+ AGVN IQFAA++
Sbjct: 1055 SMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNKIQFAANF 1114
Query: 5314 ENARTLANSFLNMTTGICLGRVLDGGEKYFTHMLEERPKQIGFDVTAICGFAGSGKSRQL 5135
E AR LANSFLNMTTGICLG+ LD GEKYF H+L++R KQIG DVT +CGFAGSGKSR+L
Sbjct: 1115 EFARILANSFLNMTTGICLGKALDNGEKYFLHILKDRVKQIGIDVTVVCGFAGSGKSRKL 1174
Query: 5134 QSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDE 4955
QSWLHSRKKGNFCVVSPR NLAADW+FKLELEPNE+RKV+TFE FIK DK KLDLI++DE
Sbjct: 1175 QSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDE 1234
Query: 4954 LTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDI 4775
LTLFPNGYLDLLVYEL + N HC++ILLFDPLQARYHN+MDE IL FEHD DRL+GGQ I
Sbjct: 1235 LTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLVGGQSI 1294
Query: 4774 QYIYSSHRMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVES 4595
+YIYS+HRMSR+FNRFFDVPCFNQA+ T EQ+LWIFDD+YSI SIC DR EPCDVLLVES
Sbjct: 1295 EYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVES 1354
Query: 4594 DLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTF 4415
DLEKKAFSPI+NVMTFGESQGLTFNHVCI RWMVALTR++TR S CSTF
Sbjct: 1355 DLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTF 1414
Query: 4414 LGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGD 4235
LGGI+EFKV++ ESL+TSILQ E ITF+RLN+M+KCNL+R EK+NGC DEVDREERLEGD
Sbjct: 1415 LGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCRDEVDREERLEGD 1474
Query: 4234 PFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRE 4055
PFLKPFIFLGQRI+K EP CQTHLYITEPNFGLCYNFDFIREKEQREYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534
Query: 4054 NMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 3875
+MLVTNQFCDSYDK HINGKRETPGP+RFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEEN 1594
Query: 3874 YQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSD 3695
YQRLS+AHLVGGLLY NFK+KMGLEF+FDQ LLEES+NAFEKKKLEKSCGTIKSHSIRSD
Sbjct: 1595 YQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSD 1654
Query: 3694 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 3515
IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP
Sbjct: 1655 IDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLP 1714
Query: 3514 EEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKV 3335
EEIYIHSNKNFDDLN WVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQK+
Sbjct: 1715 EEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKI 1774
Query: 3334 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDM 3155
IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDM
Sbjct: 1775 IDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDM 1834
Query: 3154 CALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEE 2975
CALNNL + HDFDDLFEL+SLKAKVERTE+PMFCGWRLTPYGIVKEPEL YNRFQVAIEE
Sbjct: 1835 CALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELAYNRFQVAIEE 1894
Query: 2974 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYI 2795
GKVLECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++
Sbjct: 1895 GKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFL 1954
Query: 2794 EQSSDEDI 2771
EQSSDEDI
Sbjct: 1955 EQSSDEDI 1962
>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 1137 bits (2941), Expect = 0.0
Identities = 552/614 (89%), Positives = 577/614 (93%)
Frame = -2
Query: 4612 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRI 4433
VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRAKTR
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4432 SFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDRE 4253
SFCST LGGID+FK++KGESLVTSILQ E ITF+RLNMMVKCNL++ EKKNGCSDEVDRE
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCSDEVDRE 120
Query: 4252 ERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKE 4073
ERLEGDPFLKPFIFLGQRI K EPRCQTHLYITEPNFGLCYNFDFIREKE
Sbjct: 121 ERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREKE 180
Query: 4072 QREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVF 3893
QREYRE+MLVTNQFCDSYDK HINGKRETPGPMRFKAIYPKHSADDDMTFWMAV+KRL+F
Sbjct: 181 QREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLIF 240
Query: 3892 REEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKS 3713
REEEENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ LLE+S+NAFE+KKLEKS GTIKS
Sbjct: 241 REEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIKS 300
Query: 3712 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 3533
HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ
Sbjct: 301 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 360
Query: 3532 IRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDA 3353
IRNQLPEEIY+HSNKNFDDLN+WVKKFFQRDI VESDYEAFDASQDEYILSFE+HLMKDA
Sbjct: 361 IRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKDA 420
Query: 3352 HFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 3173
+FPQ VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA
Sbjct: 421 NFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 480
Query: 3172 FAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 2993
FAGDDMCALNNLP+ H FDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF
Sbjct: 481 FAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 540
Query: 2992 QVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 2813
QVAIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK
Sbjct: 541 QVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 600
Query: 2812 VRDLYIEQSSDEDI 2771
VRDL++EQSSDEDI
Sbjct: 601 VRDLFLEQSSDEDI 614
>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 1133 bits (2931), Expect = 0.0
Identities = 550/614 (89%), Positives = 576/614 (93%)
Frame = -2
Query: 4612 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRI 4433
VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCI RWMVALTRAKTR
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4432 SFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDRE 4253
SFCST LGGID+FK++KGESLVTSILQ E ITF+RLNMMVKCNL++ EKKNGCSDEVDRE
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCSDEVDRE 120
Query: 4252 ERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKE 4073
ERLEGDPFLKPFIFLGQRI K EPRCQTHLYITEPNFGLCYNFDFIREKE
Sbjct: 121 ERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREKE 180
Query: 4072 QREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVF 3893
QREYRE+MLVTNQFCDSYDK HINGKRETPGPMRFKAIYPKHSADDDMTFWMAV+KRL+F
Sbjct: 181 QREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLIF 240
Query: 3892 REEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKS 3713
REEEENYQRLS+AHLVGGLLY+NFK K+GLEF+FDQ LLE+S+NAFE+KKLEKS GTI+S
Sbjct: 241 REEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIRS 300
Query: 3712 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 3533
HSIRSDIDWALNDVFLFMKSQL TKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ
Sbjct: 301 HSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 360
Query: 3532 IRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDA 3353
IRNQLPEEIY+HSNKNFDDLN+WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDA
Sbjct: 361 IRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDA 420
Query: 3352 HFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 3173
+FPQ VIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA
Sbjct: 421 NFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 480
Query: 3172 FAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 2993
FAGDDMCALNNLP+ H FDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF
Sbjct: 481 FAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 540
Query: 2992 QVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 2813
QVAIEEGKV+ECLENYAIEVSYAYSLSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKTK
Sbjct: 541 QVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 600
Query: 2812 VRDLYIEQSSDEDI 2771
VRDL++EQSSDEDI
Sbjct: 601 VRDLFLEQSSDEDI 614
>gb|AKN08994.1| replicase [Caucasus prunus virus]
Length = 1986
Score = 992 bits (2564), Expect = 0.0
Identities = 585/1328 (44%), Positives = 766/1328 (57%), Gaps = 62/1328 (4%)
Frame = -2
Query: 6583 DGNCFFSAFLTAFE-----------------------CPDSEDLRT-----DFANWLAIF 6488
DGNCF A LT+ + DSE+ + F W+ +F
Sbjct: 693 DGNCFMRALLTSIKGDDRTYPGSRSRLLNLSRQIGVNLTDSEEAQILREGEQFDEWMIMF 752
Query: 6487 DGGNFRELGLKIRPDGVYMEAELIYLFCVFREVTLVLHDRSCETEKVFVIHAGFEEGHIV 6308
N L LKI V + L +++ + +++ ++H
Sbjct: 753 TV-NVMNLSLKIFQGDVSIPRTLS---------PKLVNTHGNDAKEIAILH--------- 793
Query: 6307 QKGEHFLGIETYIVNTS--------LPEPDLSD------LPCGYD--ERLTKFLFRPEHF 6176
+G HFLG+ + S P SD G++ E L K + F
Sbjct: 794 -RGNHFLGLLKKCTSESGAHDFDGNQPVEASSDNHFDETFETGFNDFEELRKVVGSISMF 852
Query: 6175 NCSQFRGRKGAFLTKVDA-DYGHNGMVYPHNSWVPSLDEIIKICDQGDEFNCALINFYDS 5999
+ + R F ++ + DYGHN + Y HN W +D+++ + D +N LI Y
Sbjct: 853 KKTPLKNRDAFFFSESKSIDYGHNRIKYAHNHW-NGVDQLLPSSLRND-YNAMLIQVYKE 910
Query: 5998 DSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKE-RTSSFIMTAGSFFLMPKGYQKRA 5822
S+G H+DNEKVY++D IL++ G+ + IE K + SF M G +FLM + +Q +
Sbjct: 911 GGSIGMHRDNEKVYDNDSILSINLNGDALFQIEAKSSKRYSFRMKDGDYFLMKRDFQAKF 970
Query: 5821 RHSVRN-TSPRVSVTFRKHVRRLDGSPIAIRKDNYRNICLISALSNALNRDKQVIIAKLR 5645
RH V+ T R++VTFRKHVR PI + ++NICL+ +LS R I+ L
Sbjct: 971 RHGVQGATEGRINVTFRKHVRNSRNEPIYLGISKFKNICLMRSLSILEKRPLYDILLALI 1030
Query: 5644 SVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRISLALQNNHF 5465
N +W+ FL G GG++ D A E L +LY++ K I G G L L ++HF
Sbjct: 1031 KKNKNYWTSFLEFGVGGTLADLNQAAEDLSFRFELYMNEKWIAGGNRGPIYRLNLSDDHF 1090
Query: 5464 SAVEGHRSM-------QRTFVSHLAKKGNLNVLEGLDAMLQKDICAGVNYIQFAADYENA 5306
S HR + Q F +K+ N + + D D VN F + A
Sbjct: 1091 SV---HRELSGNVEDTQLNFSKAKSKQSNFSSSDD-DNSFDLDSIEHVNKSLFEPLNDAA 1146
Query: 5305 RTLANSFLNMTTGICLGRVLDGGEKYFTHML-----EERPKQIGFDVTAICGFAGSGKSR 5141
L SFLN TTG L + + + P+++ F CGFAGSGKS
Sbjct: 1147 ELLRQSFLNRTTGKILSDAFGENGAHLRRIRIVKSDDPFPEEVYFS----CGFAGSGKSL 1202
Query: 5140 QLQSWLHSRKKGNFCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIIL 4961
LQS L S K F V+ PR L DW K++ + KV TFE + + +++LI++
Sbjct: 1203 SLQSKLKSNFKLKFLVICPRVELKEDWERKVKCSSH---KVCTFEVALLQNLSRVELIVI 1259
Query: 4960 DELTLFPNGYLDLLVYELH-EFNAHCKVILLFDPLQARYHNRMDELILKFEHDTDRLIGG 4784
DEL LFP GYLDL++++L E N KV+LLFDPLQARYH+ DE L H+ DR+ G
Sbjct: 1260 DELGLFPRGYLDLMIFKLRTEKNFKGKVMLLFDPLQARYHSDSDERFLHEIHECDRITSG 1319
Query: 4783 QDIQYIYSSHRMSR-FFNRFF-DVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDV 4610
I Y++ S R+S+ FF FF D+ N E L FD+ + R P D+
Sbjct: 1320 AKINYLFESWRLSKKFFGNFFVDIELRNSGSVNYE--LDFFDNHIVAANEAKKRGFPIDL 1377
Query: 4609 LLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRIS 4430
+LV S EK +F+ +NV+TFGE+QGLT H CI RW+VALTRAK +IS
Sbjct: 1378 ILVASRDEKNSFAGKVNVLTFGEAQGLTVKHSCIVLSEYAEKQDDYRWVVALTRAKEKIS 1437
Query: 4429 FCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMVKCNLVRNEKKNGCSDEVDREE 4250
F ++ G+ F + + L T +R+N MV C LV + G DEVDRE+
Sbjct: 1438 FITSHRSGLTGFMSSMIGRPIHAFLTGLPFTSNRMNWMVNCELVECHRATGGRDEVDRED 1497
Query: 4249 RLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQ 4070
RLEGDPFLKPF+FLGQRI EP+ + HL I++ N+ L NFD IR KE
Sbjct: 1498 RLEGDPFLKPFVFLGQRINSEEYEIIEPEVIEPKGRVHLCISQENYALARNFDLIRAKEY 1557
Query: 4069 REYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFR 3890
RE + L TNQFC Y++ G R P+RF++I+P+H +DDD+TFWMAV+KRL F
Sbjct: 1558 REAKLMGLETNQFCHDYNRVGAQGSRHVASPLRFESIFPRHRSDDDLTFWMAVKKRLRFS 1617
Query: 3889 EEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSH 3710
EE +L ++ VG LLYQN K+K+ L FS+DQ LL+E +N FE KKL KS T+ +H
Sbjct: 1618 EEFLERAKLKDSYSVGNLLYQNLKEKLSLSFSWDQGLLDECLNDFETKKLLKSKATLANH 1677
Query: 3709 SIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQI 3530
SIRSDIDW+++ +FLFMKSQLCTKYEKQ+VDAKAGQTLACF HL+L +FAP+CRY+E +
Sbjct: 1678 SIRSDIDWSMDKIFLFMKSQLCTKYEKQYVDAKAGQTLACFSHLVLAKFAPYCRYMEKML 1737
Query: 3529 RNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAH 3350
R L EEIYIHSNKNF+DLN WV KFF+ VESDYEAFDASQD Y+L+FEV +M+D
Sbjct: 1738 RRNLKEEIYIHSNKNFNDLNDWVVKFFEEGEKVESDYEAFDASQDHYVLAFEVCVMEDMG 1797
Query: 3349 FPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAF 3170
P I+ YIDLKC LGCKLGHF+IMRFTGEF TFLFNTLANMAFT RYE PIAF
Sbjct: 1798 LPNWFINDYIDLKCTLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTFARYECDHKTPIAF 1857
Query: 3169 AGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQ 2990
AGDDMC L + F+D+ LSLKAKV RTE PMFCGW L+ YGIVKEPELV+NRF
Sbjct: 1858 AGDDMCMLKACKVSDKFEDVLSKLSLKAKVIRTEMPMFCGWNLSRYGIVKEPELVFNRFM 1917
Query: 2989 VAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKV 2810
VA + G + ECLENYAIEVSYAYSL E+LYEVLK E Q++YHQAVVRFIV +DKLKTKV
Sbjct: 1918 VAKKRGNIDECLENYAIEVSYAYSLGEKLYEVLKREEQVEYHQAVVRFIVQRLDKLKTKV 1977
Query: 2809 RDLYIEQS 2786
+DL+ +Q+
Sbjct: 1978 KDLFSDQN 1985
Score = 321 bits (822), Expect = 2e-84
Identities = 169/439 (38%), Positives = 255/439 (58%), Gaps = 3/439 (0%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVG 8546
MA ++ +T +E DK +I + + + + HFAY +N +K+ + +G
Sbjct: 1 MASVTVRTPMEKFFAANDKNDQRSILTSGVNFVKKFCDDKGIHFAYYVNDRKKEALTNLG 60
Query: 8545 IELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRRV 8366
+ L+P ++ HSHP K ENH+L ++LP+++ + S+K++KV V
Sbjct: 61 VTLHPIPFLTHSHPFCKTLENHLLINVLPNLLGNGHWVFTSVKKAKV----------NSV 110
Query: 8365 FNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNG--SGSELFSNNFIKSISGK 8192
L + V ++ +NR I +KD RY E + S LF NFI+S+ K
Sbjct: 111 IKL---AGGVSNNVDIVNRCICAKDFGRYDFEPGSVDQKINILSKDHLFPKNFIRSVR-K 166
Query: 8191 EAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGR 8012
+ +F HDEVHHW+ M FL+ T + +VV+PPELL QN +Y F+VD +
Sbjct: 167 KKIFIHDEVHHWSHLNMIQFLEETATPLLLCSVVFPPELLGGIKTPQNSALYGFQVDGDK 226
Query: 8011 LFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDS 7832
LFFFPDG ++E YEQ N+ WLF AS++ + T+TV S YAHHLF++S GE +TDS
Sbjct: 227 LFFFPDGSRSEMYEQPSNLNWLFEASYIHTSAGTYTVKMVGSFYAHHLFQISKGEKITDS 286
Query: 7831 KLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIG 7652
FF+D+ +IDMS I +RF+ Y++ PI H+ K+Y+YLLCLKKPD+ES +AKLRQ++
Sbjct: 287 VRFFADFNTIDMSVIHKERFKYYDLIPIKKSHIEKIYTYLLCLKKPDVESAIAKLRQLME 346
Query: 7651 DDVEIKEFLFFEQFCKRLI-ERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKN 7475
D+ + + FF F K+LI + + + LFG SF K D + +PN +A F +W N
Sbjct: 347 DEQDCRVVEFFCTFAKKLITDTKGAINLFGDSFLQKAKDSFIMALPNSIASCFDRWHGLN 406
Query: 7474 TFEFLFSLGTLVVEIERRV 7418
F FLF+L T+ V++E +V
Sbjct: 407 IFHFLFTLDTIRVKVETKV 425
>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
virus] gi|571026291|emb|CDF66416.2|
replication-associated polyprotein [Apricot vein clearing
associated virus]
Length = 1679
Score = 964 bits (2493), Expect = 0.0
Identities = 547/1193 (45%), Positives = 725/1193 (60%), Gaps = 64/1193 (5%)
Frame = -2
Query: 6163 FRGRKGAFLTKV-DADYGHNGMVYPHNSWVPSLDEIIKICDQGDEFNCALINFYDSDSSL 5987
FRGR F + + DYGHNG Y +W LD+ I FN L+ YD S +
Sbjct: 511 FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 567
Query: 5986 GFHKDNEKVYNDDPILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVR 5807
GFHKDNE+ Y PILTV G+ E + +F +T G L+ Y ++ RH V
Sbjct: 568 GFHKDNEQCYAGYPILTV---NFGLALFEF-DSGEAFNLTDGDTILLSGDYLRKKRHRVT 623
Query: 5806 NTSP-RVSVTFRKHVRRLDGSPIAIRKDNYR---NICLISALSNALNRDKQVIIAKLRSV 5639
+ S R+S+TFR+HV R++ SP+ +N + N C+I A++ AL + + K+ +
Sbjct: 624 SLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIVAQ 683
Query: 5638 NGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRISL---ALQNNH 5468
+ D + D Q E + ++++L+ IV + G + L L +
Sbjct: 684 RPDLLQCLVDD----EMLDKQTT-ETICVIMNLHAT---IVNEDEGETMELNPEGLIKSS 735
Query: 5467 FSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQKDI------------CAGVNYIQFA 5324
FS ++ H + + +KKG +D + D+ C + IQ+
Sbjct: 736 FSVLDEHMMVLSDIPNCRSKKG-------IDICMSPDLANSNCAANYEVTCQNLQVIQYQ 788
Query: 5323 ADYENARTLANSFLNMTTGICLGRVLDGGEKYFTHM--LEERPKQIGFDVTAICGFAGSG 5150
AD+E A L NSFL TTG L ++ G ++FT M + ER +++ + GFAGSG
Sbjct: 789 ADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSG 848
Query: 5149 KS-------RQLQSWLH-------------------SRKKGNF---CVVSPRANLAADWS 5057
KS +++ +H R +GN C++SPR NLA DW
Sbjct: 849 KSLGLLNEVKRISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWE 908
Query: 5056 FKLELEPNEKRKVATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNAHCKVI 4877
KL E V TFE K K+ LI++DELTLFPNGY+DLL++ + + CK+I
Sbjct: 909 TKLGPSALEHCSVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLI 968
Query: 4876 LLFDPLQARYHNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMS--RFFNRFFDVPCFNQ 4703
L+FDPLQARY + D IL EHD D ++G ++ Y+Y S R FN F D+ +
Sbjct: 969 LIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDL---KK 1025
Query: 4702 AETTAEQKLW---------IFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMT 4550
E AE + ++ ++ ++ ++ P DVLLV S E F+ I MT
Sbjct: 1026 NEVDAESRETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMT 1085
Query: 4549 FGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESL 4370
FGESQGLT +H I RW+VALTRA+ +++F L G++ F L
Sbjct: 1086 FGESQGLTVDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRL 1145
Query: 4369 VTSILQSEMITFDRLNMMV--KCNLVRNEKKNGCSDEVDREERLEGDPFLKPFIFLGQRI 4196
V +++ ++T RL+ MV K N V+ + G DEVDRE+RLEGD FLK IFLGQR
Sbjct: 1146 VAAVINKGLVTKKRLSSMVRAKLNYVKFKGLAG-KDEVDREDRLEGDLFLKGVIFLGQRC 1204
Query: 4195 KKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYD 4016
+ + +TH ++ + NF CYNFD IR KE RE+R VTNQF D+Y+
Sbjct: 1205 EIMEPEIVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYE 1264
Query: 4015 KAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGL 3836
K+ T GP+RF+AIYP+H ADDD+TF MAV KRL F E + ++L +AH G +
Sbjct: 1265 IVQHVQKKHTAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSI 1324
Query: 3835 LYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMK 3656
L+ N QK+GL F++D L EE VN FE KKLEKS + +HSIRSD DW+ N VFLFMK
Sbjct: 1325 LFHNLIQKLGLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMK 1384
Query: 3655 SQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDD 3476
SQLCTKYEKQ+VDAKAGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSNKNF+D
Sbjct: 1385 SQLCTKYEKQYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFND 1444
Query: 3475 LNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGC 3296
LN+WVKK D+CVESDYEAFDASQD+YILSFE+ +M+ H P+++I AYIDLK LGC
Sbjct: 1445 LNEWVKKHAGDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGC 1504
Query: 3295 KLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFD 3116
KLGHF+IMRFTGEF TFLFNTLANMAFT+CRYEW G PIAFAGDDMCAL NL + F+
Sbjct: 1505 KLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFN 1564
Query: 3115 DLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIE 2936
++FE +SLKAK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIE
Sbjct: 1565 NVFEKISLKAKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIE 1624
Query: 2935 VSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDE 2777
VSYAYSL ERL+++LK E Q++YHQAVVRFIV H+ L+TKV+DL+ EQS+++
Sbjct: 1625 VSYAYSLGERLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677
Score = 288 bits (736), Expect = 2e-74
Identities = 166/432 (38%), Positives = 241/432 (55%), Gaps = 6/432 (1%)
Frame = -2
Query: 8725 MALMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASK-- 8552
MAL+ +T ++LG+F +KHV+ IYN + R F QKK+AS
Sbjct: 1 MALLY-RTPQVNLLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRG 59
Query: 8551 -VGIELYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKK 8375
+G+ L+P Y+ HSHP SK+ ENHIL ++LP + T + SIK SKV +++ K
Sbjct: 60 WLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHI-TGSWVFSSIKPSKV---ESLATKG 115
Query: 8374 RRVFNLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFF--SSNGSGSELFSNNFIKSI 8201
++ INRL+ +KD RY + D+ S + ++ F++++
Sbjct: 116 KKSV------------LKTINRLLCAKDFGRYDVDTDSSVIRSISREAPDILPEPFVRAV 163
Query: 8200 SGKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVD 8021
G+ V HDEVHHWT M FL R + RF+F+VVYP ELL SQNPK+Y F+
Sbjct: 164 KGRN-VMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDS 222
Query: 8020 KG-RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGEL 7844
K ++ FFPDG +E YEQ+ N+ WLF ASH ++ WTV R S Y+HHLFEV G
Sbjct: 223 KSDKIVFFPDGRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNY 282
Query: 7843 VTDSKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLR 7664
TD FF+D+ +ID+ IF RF + PI+ + + +VYSYL+CLKKPD++S +AKL+
Sbjct: 283 FTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLK 342
Query: 7663 QIIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWK 7484
Q++GDD++++ +FF R++ + LF S NK L P+ + F WK
Sbjct: 343 QLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWK 402
Query: 7483 KKNTFEFLFSLG 7448
N F+ LG
Sbjct: 403 SGN---FIKKLG 411
>gb|AKN09002.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 971 bits (2510), Expect = 0.0
Identities = 581/1353 (42%), Positives = 788/1353 (58%), Gaps = 62/1353 (4%)
Frame = -2
Query: 6646 KDIFRPYDCPNTHG--KEIPTPMDGNCFFSAFL-TAFECPDSEDLRTDFANWLAIFDGGN 6476
++ +RP C + I DG CFF L T+ +L F N++ N
Sbjct: 697 ENTYRPVTCSKIGNSFQIIRASADGRCFFHTLLSTSLFGGSVNNLVNTFCNFIKNL---N 753
Query: 6475 FRELGLKIRPDGVYMEAELIYLFCVFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGE 6296
E +++ +G Y E +I LF + + H S + + +G ++
Sbjct: 754 EHEAARQVQ-EGAYPEGWMINLFLANYGIRMCCHQHSADGVTIET-GSGPISFCSLKMEN 811
Query: 6295 HFLGIETYIVNTSLPEPDL---SDLPCGYDERLTKFLFRPEHFNCSQFRGRKGAFLTKV- 6128
HF + S L + P G + + FRGR F +
Sbjct: 812 HFDYLRCLSSGVSKEHTGLLGKTTYPSG------PIINALQGLKPKSFRGRSSFFFARSN 865
Query: 6127 DADYGHNGMVYPHNSWVPSLDEIIKICDQGDEFNCALINFYDSDSSLGFHKDNEKVYNDD 5948
+ DYGHNG Y +W LD+ I FN L+ YD S +GFHKDNE+ Y
Sbjct: 866 EIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKIGFHKDNEQCYAGY 922
Query: 5947 PILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVRNTSP-RVSVTFRK 5771
PILTV G+ E + +F +T G L+ Y K+ RH V + S R+S+TFR+
Sbjct: 923 PILTV---NFGLALFEF-DSGEAFNLTDGDTILLSGDYLKKKRHRVTSLSDNRISLTFRR 978
Query: 5770 HVRRLDGSPIAIRKDNYR---NICLISALSNALNRDKQVIIAKLRSVNGPFWSRFLSDGN 5600
HV R++ SP+ ++ + N C+I A++ AL + + K+ + + D
Sbjct: 979 HVCRMNKSPLEFFSNDGKLGKNKCIIHAVAMALGQTSNTVANKIVAQRPDLLQCLVDD-- 1036
Query: 5599 GGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRISL---ALQNNHFSAVEGHRSMQRT 5429
+ D Q EA+ ++++L+ IV + G + L L + FS ++ H +
Sbjct: 1037 --EMLDKQTT-EAICVIMNLHAT---IVNEDEGETMELNPEGLIKSSFSVLDEHMMVLSD 1090
Query: 5428 FVSHLAKKGNLNVLEGLD------AMLQKDICAGVNYIQFAADYENARTLANSFLNMTTG 5267
+ ++KKG +++ D A+ + C + IQ+ AD+E A L NSFL TTG
Sbjct: 1091 VPNCMSKKG-IDICMSPDLANSNCAVNYEVTCQNLQVIQYQADHERAIKLMNSFLAGTTG 1149
Query: 5266 ICLGRVLDGGEKYFTHM--LEERPKQIGFDVTAICGFAGSGKS-------RQLQSWLH-- 5120
L ++ G ++FT M + ER +++ + GFAGSGKS +++ +H
Sbjct: 1150 AVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRISREIHLA 1209
Query: 5119 -----------------SRKKGNF---CVVSPRANLAADWSFKLELEPNEKRKVATFESF 5000
R +GN C++SPR NLA DW KL E V TFE F
Sbjct: 1210 KEKKRMGKGDGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSVTTFEVF 1269
Query: 4999 IKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNRMDELIL 4820
K K+ LI++DELTLFPNGY+DLL++ + + +CK+IL+FDPLQARY + D IL
Sbjct: 1270 FKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPNCKLILIFDPLQARYDSAQDRAIL 1329
Query: 4819 KFEHDTDRLIGGQDIQYIYSSHRMS--RFFNRFFDVPCFNQAETTAEQ-------KLWIF 4667
EHD D ++G ++ Y+Y S R FN F D+ N+ + +++ + ++
Sbjct: 1330 GSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKR-NEVDAESQETGKGAKFRPRMY 1388
Query: 4666 DDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCIXXXXXXX 4487
++ ++ ++ P DVLLV S E F+ I MTFGESQGLT +H I
Sbjct: 1389 TNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSA 1448
Query: 4486 XXXXLRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFDRLNMMV-- 4313
RW+VALTRA+ +++F L G++ F LV +++ +IT RL+ MV
Sbjct: 1449 LSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLITKKRLSSMVRA 1508
Query: 4312 KCNLVRNEKKNGCSDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXXEPRCQTHL 4133
K N V+ + G DEVDRE+RLEGD FLK IFLGQR + + +TH
Sbjct: 1509 KLNYVKFKGLAG-KDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVIAKEDMKTHF 1567
Query: 4132 YITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGPMRFKAIYP 3953
++ + NF CYNFD IR KE RE+R VTNQF D+Y+ K+ T GP+RF+AIYP
Sbjct: 1568 FVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHGQKKHTAGPLRFEAIYP 1627
Query: 3952 KHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLE 3773
+H ADDD+TF MAV KRL F E + ++L +AH G +L+ N QK+GL F++D L E
Sbjct: 1628 RHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFE 1687
Query: 3772 ESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLA 3593
E VN FE KKLEKS + +HSIRSD DW+ N VFLFMKSQLCTKYEKQ+VDAKAGQTLA
Sbjct: 1688 ECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLA 1747
Query: 3592 CFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDICVESDYEA 3413
CFQH+ILV FAP+CRY+E Q+R QLP EIYIHSNKNF+DLN+WVKK+ D+CVESDYEA
Sbjct: 1748 CFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLCVESDYEA 1807
Query: 3412 FDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNT 3233
FDASQD+YILSFE+ +M+ H P+++I AYIDLK LGCKLGHF+IMRFTGEF TFLFNT
Sbjct: 1808 FDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNT 1867
Query: 3232 LANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKAKVERTESPMFC 3053
LANMAFT+ RYEW G PIAFAGDDMCAL NL + F+++FE +SLKAK + TE PMFC
Sbjct: 1868 LANMAFTMRRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQITEVPMFC 1927
Query: 3052 GWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQI 2873
GWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAYSL ERL+++LK E Q+
Sbjct: 1928 GWRLSKFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQL 1987
Query: 2872 QYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDED 2774
+YHQAVVRFIV H+ L+TKV+DL+ EQ SDED
Sbjct: 1988 EYHQAVVRFIVKHLGDLRTKVKDLFAEQ-SDED 2019
Score = 303 bits (775), Expect = 8e-79
Identities = 164/438 (37%), Positives = 246/438 (56%), Gaps = 4/438 (0%)
Frame = -2
Query: 8719 LMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIE 8540
+++ K+ E N + I ++A +++ + HFAY +++ K+ S +G+
Sbjct: 4 ILNYKSPSEKFFSNLEMAKKTEIISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVP 63
Query: 8539 LYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDK-KRRVF 8363
L+P Y+ HSHP SK+ ENHIL ++LP + T + SIK SKV +++ K K+ V
Sbjct: 64 LHPTPYLAHSHPFSKMLENHILLNVLPGHI-TGSWVFSSIKPSKV---ESLATKGKKSVL 119
Query: 8362 NLEDQSSLVPDHTSFINRLIASKDISRYTEEADAFF--SSNGSGSELFSNNFIKSISGKE 8189
+NRL+ +KD RY + D+ S + ++ FI+++ G+
Sbjct: 120 RT-------------VNRLLCAKDFGRYDVDTDSSVIRSISREAPDILPEPFIRAVKGRN 166
Query: 8188 AVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG-R 8012
V HDEVHHWT M FL R + RF+F+VVYP ELL SQNPK+Y F+ K +
Sbjct: 167 -VMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGIPESQNPKMYKFQDSKSDK 225
Query: 8011 LFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDS 7832
+ FFPDG +E YEQ+ N+ WLF ASH ++ WTV R S Y+HHLFEV G TD
Sbjct: 226 IVFFPDGKASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDE 285
Query: 7831 KLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIG 7652
FF+D+ +ID+ IF RF + PI+ + + +VYSYL+CLKKPD++S +AKL+Q++G
Sbjct: 286 IRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMG 345
Query: 7651 DDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNT 7472
DD++++ +FF R++ + LF S NK L P+ + F WK N
Sbjct: 346 DDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNF 405
Query: 7471 FEFLFSLGTLVVEIERRV 7418
F+FL SL L VE+ +
Sbjct: 406 FDFLMSLKILQVEVPTEI 423
>gb|AKN08998.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 966 bits (2497), Expect = 0.0
Identities = 580/1361 (42%), Positives = 780/1361 (57%), Gaps = 70/1361 (5%)
Frame = -2
Query: 6646 KDIFRPYDCPNTHG--KEIPTPMDGNCFFSAFL-TAFECPDSEDLRTDFANWLAIFDGGN 6476
++ +RP C + I DG CFF L T+ +L F N++ D
Sbjct: 697 ENTYRPVTCSKIGNSFQIIQASADGRCFFHTLLSTSLFRGSVNNLVNTFCNFIKSLDE-- 754
Query: 6475 FRELGLKIRPDGVYMEAELIYLFCVFREVTLVLHDRSCETEKVFVIHAGFEEGHIVQKGE 6296
E +++ +G Y E +I LF + + H S + + +G ++
Sbjct: 755 -HEAARQVQ-EGAYPEGWMINLFLANYGIRMCCHQHSADGVTIET-GSGPISFCSLKMEN 811
Query: 6295 HFLGIETYIVNTSLPEPDL---SDLPCGYDERLTKFLFRPEHFNCSQFRGRKGAFLTKV- 6128
HF + S L + P G + + FRGR F +
Sbjct: 812 HFDYLRCLSSGVSKEHTGLLGKTTYPSG------PIINALQGLKPKSFRGRSSFFFARSN 865
Query: 6127 DADYGHNGMVYPHNSWVPSLDEIIKICDQGDEFNCALINFYDSDSSLGFHKDNEKVYNDD 5948
+ DYGHNG Y +W LD+ I FN L+ YD S + FHKDNE+ Y
Sbjct: 866 EIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDRGSKISFHKDNEQCYAGY 922
Query: 5947 PILTVCTEGEGILSIELKERTSSFIMTAGSFFLMPKGYQKRARHSVRNTSP-RVSVTFRK 5771
PILTV G+ E + +F +T G L+ Y ++ RH V + S R+S+TFR+
Sbjct: 923 PILTV---NFGLALFEF-DSGEAFNLTDGDTILLSGDYLRKKRHRVTSLSDGRISLTFRR 978
Query: 5770 HVRRLDGSPIAIRKDNYR---NICLISALSNALNRDKQVIIAKLRSVNGPFWSRFLSDGN 5600
HV R++ SP+ ++ + N C+I A++ AL + + K+ + + D
Sbjct: 979 HVCRMNKSPLEFFSNDGKLGKNKCIIHAVAMALGQTSNTVANKIVAQRPDLLQCLVDD-- 1036
Query: 5599 GGSIEDCQAACEALGIVVDLYVDGKCIVMGEGGLRISL---ALQNNHFSAVEGHRSMQRT 5429
+ D Q E + ++++L+ IV + G + L L + FS ++ H +
Sbjct: 1037 --EMLDKQTT-ETICVIMNLHAT---IVNEDEGETMELNPEGLIKSSFSVLDEHMMV--- 1087
Query: 5428 FVSHLAKKGNLNVLEGLDAMLQKDI------------CAGVNYIQFAADYENARTLANSF 5285
L+ N +G+D + D+ C + IQ+ AD+E A L NSF
Sbjct: 1088 ----LSDVPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMNSF 1143
Query: 5284 LNMTTGICLGRVLDGGEKYFTHM--LEERPKQIGFDVTAICGFAGSGKS-------RQLQ 5132
L TTG L ++ G ++FT M + ER +++ + GFAGSGKS +++
Sbjct: 1144 LAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRIS 1203
Query: 5131 SWLHSRK------KGN----------------FCVVSPRANLAADWSFKLELEPNEKRKV 5018
+H K KGN C++SPR NLA DW KL E V
Sbjct: 1204 REIHLAKEKKRMGKGNGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSV 1263
Query: 5017 ATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHEFNAHCKVILLFDPLQARYHNR 4838
TFE F K K+ LI++DELTLFPNGY+DLL++ + + CK+IL+FDPLQARY +
Sbjct: 1264 TTFEVFFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYDSA 1323
Query: 4837 MDELILKFEHDTDRLIGGQDIQYIYSSHRMS--RFFNRFFDVPCFNQAETTAEQKLW--- 4673
D IL EHD D ++G ++ Y+Y S R FN F D+ + E AE +
Sbjct: 1324 QDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDL---KKDEVDAESRETGKG 1380
Query: 4672 ------IFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVC 4511
++ ++ ++ ++ P DVLLV S E F+ I MTFGESQGLT +H
Sbjct: 1381 AKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAA 1440
Query: 4510 IXXXXXXXXXXXLRWMVALTRAKTRISFCSTFLGGIDEFKVRKGESLVTSILQSEMITFD 4331
I RW+VALTRA+ +++F L G++ F L+ +++ ++T
Sbjct: 1441 ILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLIAAVINKGLVTKK 1500
Query: 4330 RLNMMV--KCNLVRNEKKNGCSDEVDREERLEGDPFLKPFIFLGQRIKKRXXXXXXXXXX 4157
RL+ MV K N V+ + G DEVDRE+RLEGD FLK IFLGQR +
Sbjct: 1501 RLSSMVRAKLNYVKFKGLAG-KDEVDREDRLEGDLFLKGVIFLGQRCEIVEPEIVEPVMA 1559
Query: 4156 EPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLVTNQFCDSYDKAHINGKRETPGP 3977
+ +TH ++ + NF CYNFD IR KE RE+R VTNQF D+Y+ K+ T GP
Sbjct: 1560 KEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHGQKKHTAGP 1619
Query: 3976 MRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAHLVGGLLYQNFKQKMGLEF 3797
+RF+AIYP+H ADDD+TF MAV KRL F E + ++L +AH G +L+ N QK+GL F
Sbjct: 1620 LRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNF 1679
Query: 3796 SFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVD 3617
++D L EE VN FE KKLEKS + +HSIRSD DW+ N VFLFMKSQLCTKYEKQ+VD
Sbjct: 1680 TWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVD 1739
Query: 3616 AKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVKKFFQRDI 3437
AKAGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSNKNF+DLN+WVKK D+
Sbjct: 1740 AKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDL 1799
Query: 3436 CVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFSIMRFTGE 3257
CVESDYEAFDASQD+YILSFE+ +M+ H P+++I AYIDLK LGCKLGHF+IMRFTGE
Sbjct: 1800 CVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGE 1859
Query: 3256 FCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELLSLKAKVE 3077
F TFLFNTLANMAFT+CRYEW G PIAFAGDDMCAL NL + F+++FE +SLKAK +
Sbjct: 1860 FSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQ 1919
Query: 3076 RTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYE 2897
TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAYSL ERL++
Sbjct: 1920 VTEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFD 1979
Query: 2896 VLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDED 2774
+LK E Q++YHQAVVRFIV H+ L+TKV+DL+ EQ SDED
Sbjct: 1980 ILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQ-SDED 2019
Score = 303 bits (777), Expect = 5e-79
Identities = 162/437 (37%), Positives = 245/437 (56%), Gaps = 3/437 (0%)
Frame = -2
Query: 8719 LMSNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIE 8540
+++ K+ E N + I ++A +++ + HFAY +++ K+ S +G+
Sbjct: 4 ILNYKSPFEKFFSNLEMAKKTEIISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVP 63
Query: 8539 LYPNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMCSIKESKVLVFKNIRDKKRRVFN 8360
L+P Y+ HSHP SK+ ENHIL ++LP + T + SIK SKV +++ K ++
Sbjct: 64 LHPTPYLAHSHPFSKMLENHILLNVLPGHI-TGSWVFSSIKPSKV---ESLATKGKKSV- 118
Query: 8359 LEDQSSLVPDHTSFINRLIASKDISRYTEEADAFF--SSNGSGSELFSNNFIKSISGKEA 8186
+NRL+ +KD RY + D+ S + ++ FI+++ G+
Sbjct: 119 -----------LKTVNRLLCAKDFGRYDVDTDSSVIRSISREAPDILPEPFIRAVKGRN- 166
Query: 8185 VFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKG-RL 8009
V HDEVHHWT M FL R + RF+F+VVYP ELL SQNPK+Y F+ K ++
Sbjct: 167 VMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKI 226
Query: 8008 FFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTDSK 7829
FFPDG +E YEQ+ N+ WLF ASH ++ WTV R S Y+HHLFEV G TD
Sbjct: 227 VFFPDGKASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEI 286
Query: 7828 LFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 7649
FF+D+ +ID+ IF RF + PI+ + + +VYSYL+CLKKPD++S +AKL+Q++GD
Sbjct: 287 RFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGD 346
Query: 7648 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWKKKNTF 7469
D++++ +FF R++ + LF S NK L P+ + F WK N F
Sbjct: 347 DLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNFF 406
Query: 7468 EFLFSLGTLVVEIERRV 7418
+FL SL L VE+ +
Sbjct: 407 DFLMSLKILQVEVPTEI 423
>gb|AFA43525.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 305
Score = 611 bits (1576), Expect = 0.0
Identities = 293/305 (96%), Positives = 302/305 (99%)
Frame = -2
Query: 3685 ALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEI 3506
ALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEI
Sbjct: 1 ALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEI 60
Query: 3505 YIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDA 3326
Y+HSNKNFDDLN+WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDA+FPQ VIDA
Sbjct: 61 YVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDANFPQTVIDA 120
Query: 3325 YIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCAL 3146
YIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCAL
Sbjct: 121 YIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCAL 180
Query: 3145 NNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV 2966
NNLP+ H FDDLFEL+SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV
Sbjct: 181 NNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV 240
Query: 2965 LECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQS 2786
+ECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDL++EQS
Sbjct: 241 MECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLFLEQS 300
Query: 2785 SDEDI 2771
SDEDI
Sbjct: 301 SDEDI 305
>ref|YP_009103999.1| ORF1 [Carrot betaflexivirus 1] gi|558698257|gb|AHA85534.1| ORF1
[Carrot betaflexivirus 1]
Length = 1857
Score = 652 bits (1682), Expect = 0.0
Identities = 429/1177 (36%), Positives = 617/1177 (52%), Gaps = 42/1177 (3%)
Frame = -2
Query: 6244 DLSDLPCGYD-ERLTKFLFRPEHFNCSQFRGRKGAFLTK-VDADYGHNGMVYPHNSWVPS 6071
D S L CG D + L K + + + RK + K + DYGH+ + Y + W
Sbjct: 684 DSSFLQCGIDLDNLLKGI------KSQKLKTRKAFYFCKDANFDYGHDKVKYQNMGWPNF 737
Query: 6070 LDEIIKI-CD-QGDEFNCALINFYDSDSSLGFHKDNEKVYNDD--PILTVCTEGEGILSI 5903
+ E+ KI CD G +FN LIN Y + +H D+E VY+ D P+LTV GEG+ S+
Sbjct: 738 ISELNKIACDVTGFKFNSVLINEYTRGGRIHWHADDENVYDLDRNPVLTVNMIGEGMFSV 797
Query: 5902 ELKERTSSFIMTAGSFFLMPKGYQKRARHSVRNTSPRVSVTFRKHVRRLDGSPIA--IRK 5729
++ + SF M+ G LM G QKR +HSV RVS+TFR+ +R +A I +
Sbjct: 798 KMGKYEHSFPMSPGDMILMKNGAQKRMKHSVIAKDRRVSLTFREQIRSKSLISLASSIEE 857
Query: 5728 DNYRNI---CLISALSNALNRDKQVIIAKLRSVNGPFWSRFLSDGNGGSIEDCQAACEAL 5558
+ ++ CLI +L+ + + +I L + F + + D G +I+D L
Sbjct: 858 EEINDLKESCLIDSLAEEIRISRSKLINLLVKEDSTFLIK-IKDDKGLTIDDLSIIANLL 916
Query: 5557 GIVVDLYVDGKCIVMG--EGGLR-ISLALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVL 5387
+ V + +DG+ G E R ISL L HFS G K L+
Sbjct: 917 NLSVRVLIDGQWSYFGVKESNYRLISLKLIKRHFSVYNGEVLKLALGDESSDKLIKLSDS 976
Query: 5386 EGLDAMLQKDICAG--VNYIQFAADYENARTLANSFLNMTTGICLGRVLDGGEKYFT--- 5222
++ L K VN ++E A L +SFL +TG+ + G YF+
Sbjct: 977 GFYNSFLNKIDPRNKFVNKFDRMINFERAALLIHSFLRGSTGVVTSSGFNNGVDYFSGRK 1036
Query: 5221 -----------HMLEERPKQIGFDVTA-ICGFAGSGKSRQLQSWLHSRKKG-NFCVVSPR 5081
L+E K A I GFAG GKSR +Q L S ++SPR
Sbjct: 1037 RNIDPESFRDPKFLKEMTKGDAVVKGAVILGFAGCGKSRPVQMALDSMDSPMKILLISPR 1096
Query: 5080 ANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDELTLFPNGYLDLLVYELHE 4901
NL ADW K+ N+ T+ES +K + K LII+DE L P GY D++ Y+
Sbjct: 1097 VNLLADWKLKVS---NKNVTFKTYESALKENLSKFSLIIIDEFPLTPRGYTDVIAYKSKV 1153
Query: 4900 FNAHC-------KVILLFDPLQARYHNRMDELILKFEHDTDRLIGGQDIQYIYSSHRMSR 4742
N C K++L+ DPLQA Y++ D+ +L + L +Y+ SHR+ +
Sbjct: 1154 DNLTCRLEKKVTKLLLIGDPLQASYYSESDDDLLAQGGELSSLEIDYP-RYLLYSHRLPK 1212
Query: 4741 FFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVESDLEKKAFSPII 4562
D+ E E K +++ + S ++ DV+LV EK F
Sbjct: 1213 GMKSMMDINMLGSFE--GETKWKLYNSAAAAFS-----EKAFDVILVAGRQEKTFFGNF- 1264
Query: 4561 NVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTFLGGIDEFKVRK 4382
VMTFGESQGLTFN VCI MV LTRAK I+F F ++E+ +
Sbjct: 1265 TVMTFGESQGLTFNKVCIALTEDSLLASDNHMMVGLTRAKETINFIKGFGYPLNEYVKKA 1324
Query: 4381 GESLVTSILQSEMIT---FDRLNMMVKCNLVRNEKKNGCSDEVDREERLEGDPFLKPFIF 4211
G L+ +LQ ++I + ++ M + G E++++GDP++K +
Sbjct: 1325 GNKLIGKVLQGKVIKRAELENMSGMEDVTFITEPPTFG-----GHEDKVQGDPWMKSLLT 1379
Query: 4210 LGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLVTNQF 4031
L QR + E + + H+ IT+ ++ L D +R KE RE++ +NQF
Sbjct: 1380 LTQREDSQEVELIEPDIVESKMKVHINITDKSYALMIINDQLRAKENREFKSKDSWSNQF 1439
Query: 4030 CDSYDKAHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSKAH 3851
D+ ++ + GP+ F+AI+P+H DD+TFWMAV+KRL F ++L+KA
Sbjct: 1440 KDNDQNLNLE---TSTGPVNFEAIFPRHQTFDDVTFWMAVKKRLSFSNPLVESEKLNKAW 1496
Query: 3850 LVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDIDWALNDV 3671
+ G +L++ F + + + F L E+++N FE ++ KS I +H+ RSD DW + +
Sbjct: 1497 IKGSILHKEFTRLIRVNSHFRPDLFEKALNDFEDVRMRKSEKLIMAHAGRSDPDWDIRNF 1556
Query: 3670 FLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSN 3491
LFMKSQLC K EK F DAKAGQT+ACF H +L +F+ WCRY E +I +PE Y+HS
Sbjct: 1557 LLFMKSQLCKKAEKAFCDAKAGQTIACFAHGVLFKFSAWCRYAELKINEVMPEAFYVHSK 1616
Query: 3490 KNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLK 3311
KNFD+L +WVK F ICVESDYEAFDASQD IL+FE ++KD +P +I+ Y LK
Sbjct: 1617 KNFDELERWVKGNFIGPICVESDYEAFDASQDSTILAFECLILKDVGWPHDLIEDYKTLK 1676
Query: 3310 CKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPL 3131
+LGCKLG +IMRFTGEF TF FNTLANMAFT CRY R PI FAGDDMC L N +
Sbjct: 1677 LELGCKLGMLAIMRFTGEFGTFFFNTLANMAFTFCRYNVNRTTPICFAGDDMCILTNAKI 1736
Query: 3130 RHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLE 2951
R++ +D L LKAKVE +P+FCGW L+ GI+K P LVY R +A E+G + +C++
Sbjct: 1737 RNEMNDFIGSLKLKAKVEWKINPIFCGWILSRRGILKLPSLVYYRLNIAKEKGNLKDCID 1796
Query: 2950 NYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIV 2840
+Y IE YAY + E+L E Q+ +HQ V+R ++
Sbjct: 1797 SYMIEAGYAYRKGAFIEELL-DEDQMSFHQLVIRSMI 1832
Score = 218 bits (554), Expect = 7e-53
Identities = 140/439 (31%), Positives = 216/439 (49%), Gaps = 12/439 (2%)
Frame = -2
Query: 8707 KTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELYPN 8528
+T E IL F +D + + + +T K F ++L+ +K+ AS GI L P
Sbjct: 6 RTPQEKILSTFSPSFIDNVQSTSGRTFEDEENRIGKFFNFNLDDRKKEFASNSGIYLSPY 65
Query: 8527 GYVPHSHPLSKIFENHILFDILPSVV-NTSKLIMCSIKESKVLVFKNIRDKKRRVFNLED 8351
Y HSHPL K ENH+L+ ++P ++ N + L + S+KESK+ + D +++
Sbjct: 66 SYKSHSHPLCKTIENHLLYVVIPPLIQNFNNLNVVSMKESKLKILHESSDAPKKM----- 120
Query: 8350 QSSLVPDHTSFINRLIASKDISRYT-------EEADAFFSSNGSGSELFSNNFIKSISGK 8192
+ INRL+ KD RY + SN + + I+ S
Sbjct: 121 -------SINLINRLMDVKDSFRYKSGDGLSIKYPTQLLESNTRDYDPLMDVRIEKGSN- 172
Query: 8191 EAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKV-DKG 8015
FHDE+H+WT + M FL++ + I T V+P E+L S P++Y F++ G
Sbjct: 173 --FLFHDELHYWTFSMMLDFLEKFEPSHVICTAVFPVEILEGIKQSLYPEVYSFEILQTG 230
Query: 8014 RLFFFPDGVKTEAYEQKLNMEWLFSASHLKSGDHTWTVTRHKSIYAHHLFEVSAGELVTD 7835
F PDGV +E+YEQ +NM+WLFSAS K D ++V K+I AHHLF + G ++
Sbjct: 231 NFVFAPDGVYSESYEQSVNMKWLFSASSFKVRDQIYSVDLIKTIGAHHLFTIVKGRRISR 290
Query: 7834 SKLFFSDYGSIDMSKIFLDRFRSYEVFPIAIEH---LYKVYSYLLCLKKPDLESGLAKLR 7664
S F + ++DMS +++ PIA H K+ YL LKKPD +S +AKLR
Sbjct: 291 SIRLFKGFDTLDMSAFLGTKYK----MPIADVHFSFFKKIVIYLKSLKKPDTQSAVAKLR 346
Query: 7663 QIIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFNKLTDMALSGMPNVVARMFPQWK 7484
Q++GD + + E LF E F R E + L F++ S +P V R+ ++
Sbjct: 347 QLVGDSISLTEVLFIEDFASRFQEHGAA-KLSNDGIFDQFIHSLKSILPEFVRRLMGSFQ 405
Query: 7483 KKNTFEFLFSLGTLVVEIE 7427
+ N + + V IE
Sbjct: 406 RDNLLKQISEAKAFEVRIE 424
>ref|NP_062428.1| replicase [Cherry mottle leaf virus]
gi|9294781|gb|AAF86666.1|AF170028_1 216kDa protein
[Cherry mottle leaf virus]
Length = 1887
Score = 649 bits (1673), Expect = 0.0
Identities = 444/1207 (36%), Positives = 641/1207 (53%), Gaps = 60/1207 (4%)
Frame = -2
Query: 6214 ERLTKFLFRPEHFNCSQFRGRKGAFLTKVDAD--YGHNGMVYPH-------NSWVPSLDE 6062
+ L FRP +G+K ++T +D+ Y HN + YP W+ S E
Sbjct: 692 QSLNALCFRPN-------KGKKSVYVT-LDSPMVYFHNSISYPSIEATGLIKDWILSKAE 743
Query: 6061 IIKICDQGDEFNCALINFYDSDSSLGFHKDNEKVYNDDPILTVCTEGEGILSIELKERTS 5882
D G FN AL+ Y+ D LG HKDNE Y + PILTV G+ + S + T
Sbjct: 744 -----DYGVPFNAALVQVYEKDCILGMHKDNESCYGNHPILTVNVSGKAVFSTDCCGNTM 798
Query: 5881 SFIMTAGSFFLMPKGYQKRARHSVRN-TSPRVSVTFRKHVRRLDGSPIAIRKD-NYRNIC 5708
+ +G LMP+ +Q++ RH V++ T R+SVT R H R D S RK + C
Sbjct: 799 E--LDSGDELLMPEDFQRKFRHGVKSITDGRMSVTLRVHER--DFSFEEKRKFIEGKYDC 854
Query: 5707 LISALSNALNRDKQVIIAK-LRSVNGPFWSRFLSDGNGGSIEDCQAACEALGIVVDLYVD 5531
L A++ +++ + I+ K L +++ ++ G + D ++ C I V+ D
Sbjct: 855 LFVAMAAMISKKPEDIMFKCLNTLDRCVMNK------GCDLTDLRSICSGYEIKVECQGD 908
Query: 5530 GKCIVMGEGGLRIS-LALQNNHFSAVEGHRSMQRTFVSHLAKKGNLNVLEGLDAMLQ--- 5363
+ +G+ GL + L L+ NHF+ RS + + + K ++ G+D ++
Sbjct: 909 CGLVEIGDIGLPLGKLILRGNHFTLCSKRRSNLDSLAN--SSKDVSSLSGGIDYVMVNFI 966
Query: 5362 ---KDICAGVNYIQFAADYENARTLANSFLNMTTGIC----------------------- 5261
+ I ++ + D + L + TGI
Sbjct: 967 KRLRSIEPDLSRSEIKVDIKRGGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRS 1026
Query: 5260 -LGRV---LDGGEKYFTHMLEERPKQIGFD---VTAICGFAGSGKSRQLQSWLHSRKKGN 5102
+G + +DG EK + L +++ F + I GFAGSGKS +Q+ + +G+
Sbjct: 1027 LIGAMRGNVDGMEK---NKLLNELEELNFQKVPIYGIFGFAGSGKSHAIQNLIAKEFRGS 1083
Query: 5101 --FCVVSPRANLAADWSFKLELEPNEKRKVATFESFIKMDKCKLDLIILDELTLFPNGYL 4928
+V PR LA DWS K E+ + TFES +K D + ILDE+TL P G+
Sbjct: 1084 QGLMIVCPRKFLAKDWSEK----GVEEMDIRTFESALKSDIKGKRVFILDEVTLLPRGFT 1139
Query: 4927 DLLVYELH-EFNAHCKVIL-LFDPLQARYHNRMDELILKFEHDTDRLIGGQDIQYIYSSH 4754
DLL+ ++H E N I+ L DPLQA Y ++ D+ L+ E + RL ++Y + SH
Sbjct: 1140 DLLLMKIHMEGNLKSSTIICLGDPLQASYFSQKDDSYLEREPEVKRLFK-DGVEYKWFSH 1198
Query: 4753 RMSRFFNRFFDVPCFNQAETTAEQKLWIFDDIYSIMSICIDRDEPCDVLLVESDLEKKAF 4574
R+++F R + N Q I+ D+ S + +++LV S +EK+ +
Sbjct: 1199 RVNKFTARQLSITTTNTFPGIDSQSQ-IYGDVQSAICSIQKTGIDVEIILVASMIEKELY 1257
Query: 4573 SPIINVMTFGESQGLTFNHVCIXXXXXXXXXXXLRWMVALTRAKTRISFCSTFLGGIDEF 4394
+ +TFGESQGLTF + MVA+TR SF G DE+
Sbjct: 1258 CNLGRTITFGESQGLTFGVGVVVLSEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEY 1317
Query: 4393 KVRKGESLVTSILQSEMITFDRL--NMMVKCNLVRNEKKNGCS-DEVDREERLEGDPFLK 4223
L++ + + + D + + VK NL K G DE+DREERL GDP+LK
Sbjct: 1318 MRGMKNGLLSRLTSNSGASKDFIMSSSSVKLNLSEKLIKTGAGIDEMDREERLSGDPWLK 1377
Query: 4222 PFIFLGQRIKKRXXXXXXXXXXEPRCQTHLYITEPNFGLCYNFDFIREKEQREYRENMLV 4043
IFLG+R R + + HL I N L +R +E RE++
Sbjct: 1378 SQIFLGKRFHLREPLGQVVNLEDSAIKCHLPICN-NQTLYVELSKMRAREDREFKGKDGW 1436
Query: 4042 TNQFCDSYDKAHINGKR--ETPGPMRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQ 3869
+ QF ++A N K + PM F+AIYP+H DDD+TF+ A++KRL F NY
Sbjct: 1437 SKQF---REEAGPNWKSPYKVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVANNYA 1493
Query: 3868 RLSKAHLVGGLLYQNFKQKMGLEFSFDQSLLEESVNAFEKKKLEKSCGTIKSHSIRSDID 3689
+ ++ G L + F + + L+ S +Q+LL + FE+ KL KS TI +HS RSD D
Sbjct: 1494 KFKQSQSRGQYLLKVFLEHVNLKPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPD 1553
Query: 3688 WALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEE 3509
W L+ +FLFMKSQLCTK+EK+F DAKAGQTLACFQH ILV+F+PWCRY+E + P+
Sbjct: 1554 WPLDRIFLFMKSQLCTKFEKRFEDAKAGQTLACFQHRILVEFSPWCRYVEKILTACTPDN 1613
Query: 3508 IYIHSNKNFDDLNKWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVID 3329
YIH KNF +L + K+F ICVESDY AFD SQD IL+FEV L++ + +K+++
Sbjct: 1614 FYIHQRKNFSELENFAKRFSDGSICVESDYTAFDVSQDHTILAFEVELLRFIGWDEKILN 1673
Query: 3328 AYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCA 3149
+YI +KC LGC+LG F+IMRFTGEF TFLFNTLANMAFT CRYE ++G PI FAGDDMCA
Sbjct: 1674 SYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCA 1733
Query: 3148 LNNLPLRHDFDDLFELLSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGK 2969
L NL + + + LSLKAKV RT PMFCGWRL G++KEP L+Y R VAIE G+
Sbjct: 1734 LRNLREVSTHEHILDKLSLKAKVNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGR 1793
Query: 2968 VLECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQ 2789
+L+ +++Y +E S+AY L ERL++ L+ E Q+ YHQ + RF V + L+ R+ E
Sbjct: 1794 LLDVIDSYYLEFSFAYKLGERLFQYLEIE-QLNYHQVLARFFVKNSHLLRGSAREGISEL 1852
Query: 2788 S--SDED 2774
S SD D
Sbjct: 1853 SWLSDGD 1859
Score = 166 bits (419), Expect = 5e-37
Identities = 119/409 (29%), Positives = 198/409 (48%), Gaps = 10/409 (2%)
Frame = -2
Query: 8713 SNKTAIESILGNFDKKHVDAIYNAAAQTIISHSEFRNKHFAYSLNSYQKKIASKVGIELY 8534
S +T E +L + + I N + + E R F+Y+L K+ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSYALPEKTKEWFTKSGVYLS 63
Query: 8533 PNGYVPHSHPLSKIFENHILFDILPSVVNTSKLIMC-SIKESKVLVFKNIRDKKRRVFNL 8357
P + HSHP K ENHIL++I+ ++ I C SIK +K+ + + + +++
Sbjct: 64 PFSFEVHSHPGCKTLENHILYNIVAPHISKYPYIACLSIKANKMSKMERMGAHSVKNYDI 123
Query: 8356 EDQSSLVPDHTSFINRLIASKDISRYTEEADAFFSSNGSGSELFSNNFIKSISGKEAVFF 8177
NRL+ S+D SRY + GS F
Sbjct: 124 -------------FNRLVTSRDKSRYGDLTQPTRVGGPKGSNYF---------------I 155
Query: 8176 HDEVHHWTKAQMFSFLKRTKVRRFIFTVVYPPELLRKFANSQNPKIYDFKVDKGRLFFFP 7997
HDE+H+W++ Q+ +FL K R T+V+PPE+L+ + +S P +Y+F++DKG L + P
Sbjct: 156 HDEIHYWSRTQLETFLDIKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMP 215
Query: 7996 DGVKTEAYEQKLNMEWLFSAS--HLKSGD---HTWTVTRHKSIYAHHLFEVSAG-ELVTD 7835
DG ++E+Y Q + +L S + K+ D ++VT ++ +HH+F + L+ D
Sbjct: 216 DGSRSESYTQSIENGYLLSTNCISFKNKDGLRKQYSVTLVYTLGSHHVFHIFPNMGLIED 275
Query: 7834 SKLFFSDYGSIDMSKIFLDRFR-SYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 7658
F Y D+ +F R + FP++ K++ Y+ LKKPD +S +AKLRQ+
Sbjct: 276 EIRRFGPYDLFDVGTLFKKPVRVPIQGFPLST--FKKIFIYMSSLKKPDEQSAVAKLRQL 333
Query: 7657 IGDDVEIKEFLFFEQFCKRLIERQ--TSWGLFGHSFFNKLTDMALSGMP 7517
++ I+ ++F KR IE+ SW SFF+ L D +P
Sbjct: 334 CDAEISIEAVFLIQEFAKR-IEKGGILSWSC---SFFDYLKDHFFDKIP 378
>gb|ACF94734.1| putative replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 289
Score = 581 bits (1498), Expect = 0.0
Identities = 277/289 (95%), Positives = 285/289 (98%)
Frame = -2
Query: 3637 YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVK 3458
YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLN WVK
Sbjct: 1 YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVK 60
Query: 3457 KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFS 3278
KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQK+IDAYIDLKCKLGCKLGHFS
Sbjct: 61 KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFS 120
Query: 3277 IMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELL 3098
IMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDMCALNNL + HDFDDLFEL+
Sbjct: 121 IMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELI 180
Query: 3097 SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYS 2918
SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYA EVSYAYS
Sbjct: 181 SLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAFEVSYAYS 240
Query: 2917 LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDEDI 2771
LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++EQSSDEDI
Sbjct: 241 LSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 289
>gb|ACF94732.1| putative replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 289
Score = 580 bits (1496), Expect = 0.0
Identities = 277/289 (95%), Positives = 285/289 (98%)
Frame = -2
Query: 3637 YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVK 3458
YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLN WVK
Sbjct: 1 YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVK 60
Query: 3457 KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFS 3278
KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQK+IDAYIDLKCKLGCKLGHFS
Sbjct: 61 KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFS 120
Query: 3277 IMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELL 3098
IMRFTGEFCTFLFNTLAN AFT+CRYEWRRGQPIAFAGDDMCALNNL + HDFDDLFEL+
Sbjct: 121 IMRFTGEFCTFLFNTLANKAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELI 180
Query: 3097 SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYS 2918
SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYS
Sbjct: 181 SLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYS 240
Query: 2917 LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDEDI 2771
LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++EQSSDEDI
Sbjct: 241 LSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 289
>gb|ACF94736.1| putative replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 289
Score = 577 bits (1488), Expect = 0.0
Identities = 275/289 (95%), Positives = 285/289 (98%)
Frame = -2
Query: 3637 YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNKWVK 3458
YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRNQLPEEIYIHSNKNFDDLN WVK
Sbjct: 1 YEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNAWVK 60
Query: 3457 KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKVIDAYIDLKCKLGCKLGHFS 3278
KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQK+IDAYIDLKCKLGCKLGHFS
Sbjct: 61 KFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFS 120
Query: 3277 IMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIAFAGDDMCALNNLPLRHDFDDLFELL 3098
IMRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPIAFAGDDMCALNNL + HDFDDLFEL+
Sbjct: 121 IMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELI 180
Query: 3097 SLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYS 2918
SLKA+VERTE+PMFCGWRLTPYGIVKEPELVY+RFQVAIEEGKVLECLENYAIEVSYAYS
Sbjct: 181 SLKAEVERTETPMFCGWRLTPYGIVKEPELVYSRFQVAIEEGKVLECLENYAIEVSYAYS 240
Query: 2917 LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLYIEQSSDEDI 2771
LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKVRDL++EQSSDEDI
Sbjct: 241 LSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 289